Your job contains 1 sequence.
>psy1534
MTSPVTETELVEQIAHQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTY
VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG
GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF
RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR
LDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKL
QYDKSSDENDAASVNTASKTDSTNAEKDKIGNLPNMNTNPTPTASVSTPAALAAAVTALT
QAQQPPPPQPSLGNLGLNLGLGGAANDLTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLG
QSNILSGMAAYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMD
YGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNC
GDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1534
(587 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0260010 - symbol:rump "rumpelstiltskin" species:72... 478 1.4e-84 3
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 379 1.3e-49 2
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 379 1.2e-48 2
UNIPROTKB|F1PIL7 - symbol:MYEF2 "Uncharacterized protein"... 371 1.4e-48 2
UNIPROTKB|F1SN63 - symbol:MYEF2 "Uncharacterized protein"... 370 1.4e-48 2
UNIPROTKB|A6QQP0 - symbol:MYEF2 "MYEF2 protein" species:9... 372 1.4e-48 2
UNIPROTKB|Q9P2K5 - symbol:MYEF2 "Myelin expression factor... 376 2.4e-48 2
ZFIN|ZDB-GENE-051120-114 - symbol:myef2 "myelin expressio... 374 5.1e-48 2
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 373 7.6e-48 2
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 373 9.4e-48 2
RGD|1306547 - symbol:Myef2 "myelin expression factor 2" s... 373 1.5e-47 2
WB|WBGene00007706 - symbol:C25A1.4 species:6239 "Caenorha... 398 2.9e-46 2
UNIPROTKB|Q9XVS2 - symbol:C25A1.4 "Protein C25A1.4" speci... 398 2.9e-46 2
UNIPROTKB|F1MY44 - symbol:HNRNPM "Uncharacterized protein... 359 2.4e-44 2
UNIPROTKB|F1NS10 - symbol:HNRNPM "Uncharacterized protein... 349 3.4e-44 2
UNIPROTKB|P52272 - symbol:HNRNPM "Heterogeneous nuclear r... 357 4.0e-44 2
MGI|MGI:1926465 - symbol:Hnrnpm "heterogeneous nuclear ri... 353 1.1e-43 2
ZFIN|ZDB-GENE-030131-6898 - symbol:hnrnpm "heterogeneous ... 268 2.0e-41 3
UNIPROTKB|F1PIK6 - symbol:MYEF2 "Uncharacterized protein"... 260 4.6e-41 3
RGD|620369 - symbol:Hnrnpm "heterogeneous nuclear ribonuc... 277 1.8e-40 3
UNIPROTKB|F1LV13 - symbol:Hnrpm "Protein Hnrpm" species:1... 277 1.8e-40 3
UNIPROTKB|Q62826 - symbol:Hnrnpm "Heterogeneous nuclear r... 277 1.8e-40 3
UNIPROTKB|F1SA50 - symbol:HNRNPM "Uncharacterized protein... 277 2.1e-40 3
UNIPROTKB|E2RMR3 - symbol:HNRNPM "Uncharacterized protein... 277 2.0e-39 3
UNIPROTKB|Q5ZL80 - symbol:HNRNPM "Uncharacterized protein... 315 2.6e-36 2
UNIPROTKB|F1PIN4 - symbol:MYEF2 "Uncharacterized protein"... 274 7.5e-34 2
UNIPROTKB|F1MYI2 - symbol:HNRNPM "Uncharacterized protein... 277 2.2e-32 3
UNIPROTKB|F1M275 - symbol:F1M275 "Uncharacterized protein... 288 6.2e-31 2
UNIPROTKB|F1LYG7 - symbol:F1LYG7 "Uncharacterized protein... 279 8.9e-30 2
UNIPROTKB|H0YN19 - symbol:MYEF2 "Myelin expression factor... 265 9.5e-29 2
UNIPROTKB|F1LSJ5 - symbol:Hnrpm "Protein Hnrpm" species:1... 277 9.4e-24 1
UNIPROTKB|G5E6C3 - symbol:G5E6C3 "Uncharacterized protein... 218 8.6e-22 2
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 162 8.6e-16 3
SGD|S000004949 - symbol:HRB1 "Poly(A+) RNA-binding protei... 122 1.4e-11 2
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 115 8.5e-11 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 122 9.2e-11 3
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 122 1.9e-10 3
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 155 2.2e-10 1
UNIPROTKB|H0YKS1 - symbol:MYEF2 "Myelin expression factor... 154 2.8e-10 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 136 4.0e-10 3
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 135 6.3e-10 2
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 135 6.3e-10 2
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 112 6.4e-10 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 112 6.4e-10 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 120 6.4e-10 3
SGD|S000000517 - symbol:GBP2 "Poly(A+) RNA-binding protei... 118 1.9e-09 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 128 2.0e-09 3
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 113 3.2e-09 2
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 132 4.2e-09 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 125 4.6e-09 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 117 4.9e-09 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 130 5.3e-09 3
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 124 1.1e-08 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 120 1.1e-08 3
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 129 1.2e-08 3
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 133 1.3e-08 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 128 1.7e-08 3
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 113 1.7e-08 3
UNIPROTKB|H0YIB4 - symbol:SRSF9 "Serine/arginine-rich-spl... 91 2.0e-08 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 118 2.3e-08 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 118 2.3e-08 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 118 2.3e-08 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 132 2.3e-08 2
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 118 2.3e-08 2
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 118 2.4e-08 2
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 136 2.5e-08 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 129 2.6e-08 3
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 120 2.6e-08 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 114 2.7e-08 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 128 2.8e-08 3
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 124 3.0e-08 3
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 115 3.1e-08 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 115 3.1e-08 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 123 3.4e-08 3
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 159 3.4e-08 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 129 3.5e-08 3
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 126 3.6e-08 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 115 4.2e-08 2
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 115 4.2e-08 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 115 4.2e-08 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 115 4.2e-08 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 128 4.2e-08 3
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 128 4.2e-08 3
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 123 4.6e-08 3
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 110 4.7e-08 3
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 123 5.0e-08 3
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 133 5.2e-08 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 115 5.3e-08 2
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 136 5.7e-08 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 112 6.1e-08 3
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 132 6.7e-08 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 125 6.7e-08 3
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 133 7.2e-08 3
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 131 7.6e-08 3
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 133 7.8e-08 2
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 109 8.2e-08 2
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 131 8.5e-08 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 125 9.0e-08 3
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 125 9.0e-08 3
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 125 9.0e-08 3
WARNING: Descriptions of 393 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 478 (173.3 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 91/138 (65%), Positives = 118/138 (85%)
Query: 133 NNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
NNSS + N YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++
Sbjct: 206 NNSSNY-NLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLS 264
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
LDK+G SRGF +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL
Sbjct: 265 LDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLG 323
Query: 253 SIGMGLGANGAPLQDVAN 270
+G+GLG NG PL+DVA+
Sbjct: 324 GVGIGLGPNGEPLRDVAH 341
Score = 250 (93.1 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 63/158 (39%), Positives = 88/158 (55%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXX 490
YS G +S SSGNN YS S++ NA + G G+GG +D
Sbjct: 479 YSSGGTGGGNSYSSGNN-YSGGGG-SSNLGYNAYSSSGGMGGGNGGVGVDGNDYNTGNPL 536
Query: 491 XXXXXXNPRAGLDSNRSMNQ-SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK 549
+ G + S N ++ + DT+++KN+P T TWQ LRDKFR GD+KFAEI+
Sbjct: 537 DVYGGGS-NVGNSNVGSANAVGASRKSDTIIIKNVPITCTWQTLRDKFREIGDVKFAEIR 595
Query: 550 GKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
G D+G+VRF E A+ AI +MD +R+DG+ I VT+F
Sbjct: 596 GN-DVGVVRFFKERDAELAIALMDGSRLDGRNIKVTYF 632
Score = 151 (58.2 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG + YV++ D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+KE
Sbjct: 81 VGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKE 132
Score = 125 (49.1 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
Identities = 32/106 (30%), Positives = 56/106 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P +++
Sbjct: 58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEK 117
Query: 220 LNNQNLFERRITVRMDR--VADRLDGPVRLPEGLKSIGMGL-GANG 262
+N + R + V+ D D+ VR G G G+ G NG
Sbjct: 118 MNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNG 163
Score = 67 (28.6 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + L Q+ L+ G V V++ D G RG A++E+ P +A++ + R
Sbjct: 239 LDYKVDNKKLKQVFKLA--GKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQM 296
Query: 97 TKGRKLVIK-EAVEDK 111
R++ ++ + + DK
Sbjct: 297 LFDRRMTVRLDRIPDK 312
Score = 49 (22.3 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKGD---IGLVRFDSEWTAKRAIDMMD 573
V V NL + ++L+ F+ G ++ ++ +G+ ++ +D A +AI M+D
Sbjct: 234 VFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLD 293
Query: 574 R 574
R
Sbjct: 294 R 294
Score = 49 (22.3 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ + N+ + LR+ FR G V+ EI + G V F +A +I++++
Sbjct: 565 IIIKNVPITCTWQTLRDKFREIGDVKFAEI------RGNDVGVVRFFKERDAELAIALMD 618
Query: 222 NQNLFERRITV 232
L R I V
Sbjct: 619 GSRLDGRNIKV 629
Score = 39 (18.8 bits), Expect = 1.8e-62, Sum P(3) = 1.8e-62
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 432 SQGMQSQTSSLSSG-NNVYSNQSAPSTDYSRNASNMYGNSRYGSGG 476
+QG LSS +N+ N D + SN+ ++ Y SGG
Sbjct: 438 NQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYSSGG 483
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 379 (138.5 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 93/225 (41%), Positives = 126/225 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE E +
Sbjct: 74 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHAR 133
Query: 115 XXXXXXXXV-----DRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D++ L N N + P+ + +L L + +FVANLD+
Sbjct: 134 RALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAG-RLGSTIFVANLDF 192
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 193 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 252
Query: 230 ITVRMD---------RVADRLDGPVRLPEGLKSIGMGLGANGAPL 265
+ V+MD RV D +LP GL IGMGLG G P+
Sbjct: 253 MHVKMDDKSVPHEDFRVVDSKAS--QLPRGLGGIGMGLGPGGQPI 295
Score = 155 (59.6 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSE 562
+M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 454 AMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSP 513
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 514 ESAEKACRIMNGIKISGREIDV 535
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 464 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 522
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 523 MNGIKISGREIDVRLDRNA 541
Score = 115 (45.5 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +++
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 219 MLNNQNLFERRITVRMD 235
+N +L R + ++ D
Sbjct: 110 TMNKYDLSGRPLNIKED 126
Score = 76 (31.8 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 184 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 243
Query: 573 D 573
+
Sbjct: 244 N 244
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 379 (138.5 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 93/225 (41%), Positives = 126/225 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE E +
Sbjct: 142 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHAR 201
Query: 115 XXXXXXXXV-----DRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D++ L N N + P+ + +L L + +FVANLD+
Sbjct: 202 RALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAG-RLGSTIFVANLDF 260
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 261 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 320
Query: 230 ITVRMD---------RVADRLDGPVRLPEGLKSIGMGLGANGAPL 265
+ V+MD RV D +LP GL IGMGLG G P+
Sbjct: 321 MHVKMDDKSVPHEDFRVVDSKAS--QLPRGLGGIGMGLGPGGQPI 363
Score = 155 (59.6 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSE 562
+M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 529 AMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSP 588
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 589 ESAEKACRIMNGIKISGREIDV 610
Score = 142 (55.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 539 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 597
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 598 MNGIKISGREIDVRLDRNA 616
Score = 115 (45.5 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +++
Sbjct: 118 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 177
Query: 219 MLNNQNLFERRITVRMD 235
+N +L R + ++ D
Sbjct: 178 TMNKYDLSGRPLNIKED 194
Score = 76 (31.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 252 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 311
Query: 573 D 573
+
Sbjct: 312 N 312
Score = 37 (18.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQS-PDLVRKAVNKMHRF 95
G V++ ND+T K + + E + P + NK +RF
Sbjct: 59 GSANGVKMDNDETAKEEKAPVKEKHAKPKAIPSLGNK-NRF 98
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 371 (135.7 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 91/223 (40%), Positives = 126/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 73 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 132
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 133 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 191
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 192 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 251
Query: 230 ITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + D D +LP GL IGMGLG G P+
Sbjct: 252 MHVKMDDKSVPHEDYRSHDSKTPQLPRGLGGIGMGLGPGGQPI 294
Score = 153 (58.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 417 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 476
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 477 IKISGREIDV 486
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 415 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 473
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 474 MNGIKISGREIDVRLDRNA 492
Score = 116 (45.9 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 46 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 105
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 106 ALETMNKYDLSGRPLNIKED 125
Score = 76 (31.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 183 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 242
Query: 573 D 573
+
Sbjct: 243 N 243
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 370 (135.3 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 91/223 (40%), Positives = 126/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVITNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + D D +LP GL IGMGLG G P+
Sbjct: 250 MHVKMDDKSVPHEDYRSHDSKTPQLPRGLGGIGMGLGPGGQPI 292
Score = 154 (59.3 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEW 563
M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 447 MRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPE 506
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 507 SAEKACRIMNGIKISGREIDV 527
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 456 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 514
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 515 MNGIKISGREIDVRLDRNA 533
Score = 116 (45.9 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 44 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 103
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 104 ALETMNKYDLSGRPLNIKED 123
Score = 76 (31.8 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 181 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 240
Query: 573 D 573
+
Sbjct: 241 N 241
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 372 (136.0 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 91/224 (40%), Positives = 126/224 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD-RVADRLD-------GPVRLPEGLKSIGMGLGANGAPL 265
+ V+MD + D P +LP GL IGMGLG G P+
Sbjct: 303 MHVKMDDKSVPHEDYRSHDSKAP-QLPRGLGGIGMGLGPGGQPI 345
Score = 153 (58.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 468 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 527
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 528 IKISGREIDV 537
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 466 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 524
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 525 MNGIKISGREIDVRLDRNA 543
Score = 116 (45.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 97 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 156
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 157 ALETMNKYDLSGRPLNIKED 176
Score = 76 (31.8 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293
Query: 573 D 573
+
Sbjct: 294 N 294
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 376 (137.4 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
Identities = 91/223 (40%), Positives = 127/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMDRVA---DRL---DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + + DG +LP GL IGMGLG G P+
Sbjct: 303 MHVKMDDKSVPHEEYRSHDGKTPQLPRGLGGIGMGLGPGGQPI 345
Score = 154 (59.3 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEW 563
M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 514 MRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPE 573
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 574 SAEKACRIMNGIKISGREIDV 594
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 116 (45.9 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 97 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 156
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 157 ALETMNKYDLSGRPLNIKED 176
Score = 76 (31.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293
Query: 573 D 573
+
Sbjct: 294 N 294
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 374 (136.7 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 94/229 (41%), Positives = 128/229 (55%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M + + GR L IKE + +
Sbjct: 105 VGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHAR 164
Query: 115 XXXXXXXXV-----DRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ +D S + N N + + + +L L +FVANLD+
Sbjct: 165 RVLQRSGRMYGGGRGQDSSGI--NIPPSIANNPNIPHEIISALQAG-RLGATIFVANLDF 221
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V ++ DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF+R+
Sbjct: 222 KVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQ 281
Query: 230 ITVRMDRVADRLDG--PV----RLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD + D PV +LP GL IGMGLG G P+ AN L
Sbjct: 282 MHVKMDDKSLPPDDFRPVEKSPQLPRGLGGIGMGLGPGGQPIN--ANCL 328
Score = 148 (57.2 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 30/70 (42%), Positives = 49/70 (70%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NL ++WQ+L++KF +CG + +AEIK GK G VRFDS +A++A +M+
Sbjct: 482 IFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGKSKGCGTVRFDSPESAEKACRLMNG 541
Query: 575 TRIDGKIIDV 584
T+I+G+ +DV
Sbjct: 542 TKINGREVDV 551
Score = 145 (56.1 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 481 QIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACRLM 539
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 540 NGTKINGREVDVRLDRNA 557
Score = 110 (43.8 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+VF++N+ Y + ++++ R G+V VE+ D +GKSRG G VEF ++I
Sbjct: 81 NRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIE 140
Query: 219 MLNNQNLFERRITVRMD 235
+++ +L R + ++ D
Sbjct: 141 VMSKHDLNGRPLNIKED 157
Score = 73 (30.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G ++ A++K GK +G V F+ A +AI M
Sbjct: 213 TIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMF 272
Query: 573 D 573
+
Sbjct: 273 N 273
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 373 (136.4 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 91/223 (40%), Positives = 127/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSIVNNPNIPPEVINNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + D D +LP GL IGMGLG G P+
Sbjct: 294 MHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPI 336
Score = 149 (57.5 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 492 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 551
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 552 IKISGREIDV 561
Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 490 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 548
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 549 MNGIKISGREIDVRLDRNA 567
Score = 116 (45.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 88 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 147
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 148 ALETMNKYDLSGRPLNIKED 167
Score = 76 (31.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284
Query: 573 D 573
+
Sbjct: 285 N 285
Score = 37 (18.1 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 550 GKGDIGLVR 558
G+GDIGL R
Sbjct: 409 GRGDIGLSR 417
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 373 (136.4 bits), Expect = 9.4e-48, Sum P(2) = 9.4e-48
Identities = 91/223 (40%), Positives = 127/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSIVNNPNIPPEVINNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + D D +LP GL IGMGLG G P+
Sbjct: 294 MHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPI 336
Score = 149 (57.5 bits), Expect = 9.4e-48, Sum P(2) = 9.4e-48
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 499 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 558
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 559 IKISGREIDV 568
Score = 138 (53.6 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 497 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 555
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 556 MNGIKISGREIDVRLDRNA 574
Score = 116 (45.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 88 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 147
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 148 ALETMNKYDLSGRPLNIKED 167
Score = 76 (31.8 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284
Query: 573 D 573
+
Sbjct: 285 N 285
Score = 37 (18.1 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 550 GKGDIGLVR 558
G+GDIGL R
Sbjct: 392 GRGDIGLSR 400
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 373 (136.4 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 91/223 (40%), Positives = 127/223 (56%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + +
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 XXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSIVNNPNIPPEVINNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
+ V+MD + D D +LP GL IGMGLG G P+
Sbjct: 294 MHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPI 336
Score = 149 (57.5 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 575
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 576 IKISGREIDV 585
Score = 138 (53.6 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 572
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 573 MNGIKISGREIDVRLDRNA 591
Score = 116 (45.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 88 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 147
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 148 ALETMNKYDLSGRPLNIKED 167
Score = 76 (31.8 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK GK +G V F+ A +AI M
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284
Query: 573 D 573
+
Sbjct: 285 N 285
Score = 37 (18.1 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 550 GKGDIGLVR 558
G+GDIGL R
Sbjct: 409 GRGDIGLSR 417
>WB|WBGene00007706 [details] [associations]
symbol:C25A1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z81038
GeneTree:ENSGT00410000025635 HSSP:P52298 eggNOG:NOG301511
PIR:T19433 RefSeq:NP_492677.1 ProteinModelPortal:Q9XVS2 SMR:Q9XVS2
DIP:DIP-24275N IntAct:Q9XVS2 MINT:MINT-1075212 STRING:Q9XVS2
PaxDb:Q9XVS2 EnsemblMetazoa:C25A1.4.1 EnsemblMetazoa:C25A1.4.2
GeneID:172881 KEGG:cel:CELE_C25A1.4 UCSC:C25A1.4.1 CTD:172881
WormBase:C25A1.4 HOGENOM:HOG000019589 InParanoid:Q9XVS2 OMA:CERIFIA
NextBio:877383 Uniprot:Q9XVS2
Length = 454
Score = 398 (145.2 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 89/229 (38%), Positives = 131/229 (57%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXXX 115
G+V + E+L D GKP+G+A+VEF++ + K V + +F+ KGR ++ KE +
Sbjct: 70 GEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENLQKFDWKGRTIIAKEIRDPNAFFR 129
Query: 116 XXXXXXXVDRDLSALLQNNSSKFG------------NTY---GLSPQFLESLGINCPLIN 160
+D LS + G TY GL+ +FL I PL
Sbjct: 130 TIKTETGIDY-LSRTGGGGAGGRGPPPKDLDRPTRTGTYDLFGLNMEFLRQHNIEPPLCE 188
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ANL + V KL EVF +AGK+ ++ +DK+GKS+G +++ HP+EAVQ++SML
Sbjct: 189 RIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSML 248
Query: 221 NNQNLFERRITVRMDRVADRLDGPVR-LPEGLKSIGMGLGANGAPLQDV 268
N Q LF+R + V+MDR L+ LP GL+SIGMGLGA GAPL +V
Sbjct: 249 NGQRLFDRNLVVKMDRFDKELEHKEGGLPRGLESIGMGLGAEGAPLSNV 297
Score = 104 (41.7 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID 578
++++NLP TWQ +RD+ RN G++ ++ G +RF + A+RA + + ++
Sbjct: 387 IIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPG-AARIRFATFQDAERARAALYGSTVE 445
Query: 579 GKIIDVTF 586
G++I V +
Sbjct: 446 GRMISVDY 453
>UNIPROTKB|Q9XVS2 [details] [associations]
symbol:C25A1.4 "Protein C25A1.4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:Z81038 GeneTree:ENSGT00410000025635 HSSP:P52298
eggNOG:NOG301511 PIR:T19433 RefSeq:NP_492677.1
ProteinModelPortal:Q9XVS2 SMR:Q9XVS2 DIP:DIP-24275N IntAct:Q9XVS2
MINT:MINT-1075212 STRING:Q9XVS2 PaxDb:Q9XVS2
EnsemblMetazoa:C25A1.4.1 EnsemblMetazoa:C25A1.4.2 GeneID:172881
KEGG:cel:CELE_C25A1.4 UCSC:C25A1.4.1 CTD:172881 WormBase:C25A1.4
HOGENOM:HOG000019589 InParanoid:Q9XVS2 OMA:CERIFIA NextBio:877383
Uniprot:Q9XVS2
Length = 454
Score = 398 (145.2 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 89/229 (38%), Positives = 131/229 (57%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXXX 115
G+V + E+L D GKP+G+A+VEF++ + K V + +F+ KGR ++ KE +
Sbjct: 70 GEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENLQKFDWKGRTIIAKEIRDPNAFFR 129
Query: 116 XXXXXXXVDRDLSALLQNNSSKFG------------NTY---GLSPQFLESLGINCPLIN 160
+D LS + G TY GL+ +FL I PL
Sbjct: 130 TIKTETGIDY-LSRTGGGGAGGRGPPPKDLDRPTRTGTYDLFGLNMEFLRQHNIEPPLCE 188
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ANL + V KL EVF +AGK+ ++ +DK+GKS+G +++ HP+EAVQ++SML
Sbjct: 189 RIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSML 248
Query: 221 NNQNLFERRITVRMDRVADRLDGPVR-LPEGLKSIGMGLGANGAPLQDV 268
N Q LF+R + V+MDR L+ LP GL+SIGMGLGA GAPL +V
Sbjct: 249 NGQRLFDRNLVVKMDRFDKELEHKEGGLPRGLESIGMGLGAEGAPLSNV 297
Score = 104 (41.7 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID 578
++++NLP TWQ +RD+ RN G++ ++ G +RF + A+RA + + ++
Sbjct: 387 IIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPG-AARIRFATFQDAERARAALYGSTVE 445
Query: 579 GKIIDVTF 586
G++I V +
Sbjct: 446 GRMISVDY 453
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 359 (131.4 bits), Expect = 2.4e-44, Sum P(2) = 2.4e-44
Identities = 93/229 (40%), Positives = 125/229 (54%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 XXXXXXXXVDRDLSAL-----LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ + N N + + + +L L + VFVANLDY
Sbjct: 155 RAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAG-RLGSTVFVANLDY 213
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 214 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 273
Query: 230 ITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 274 MHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 320
Score = 141 (54.7 bits), Expect = 2.4e-44, Sum P(2) = 2.4e-44
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
Score = 48 (22.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 471 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 527
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
++ V P G+ G GL G + +A L + L + R LER
Sbjct: 528 GMERMV--PAGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 578
Score = 41 (19.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 436 RMGLVMDRMGSVERMGSGIERMGPLGL 462
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 349 (127.9 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 93/230 (40%), Positives = 124/230 (53%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 83 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHAR 142
Query: 115 XXXXXXXXVDR------DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ N N + + + +L L + VFVANLD
Sbjct: 143 RAMQKVMAAGGMGIGPGPGGPGMINIPPSILNNPNIPNEIIHALQAG-RLGSTVFVANLD 201
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
YKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 202 YKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFNGQLLFDR 261
Query: 229 RITVRMDRVA----DRL--DGPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD A D + P +LP GL IGMGLG G P+ AN L
Sbjct: 262 PMHVKMDERAFPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 309
Score = 141 (54.7 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+VRF+S A+RA MM+
Sbjct: 484 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMNG 543
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 544 IQLRGREIDV 553
Score = 119 (46.9 bits), Expect = 0.00067, P = 0.00067
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V F+ P A ++ M+
Sbjct: 483 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVRFESPEVAERACRMM 541
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 542 NGIQLRGREIDVRIDRNA 559
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 357 (130.7 bits), Expect = 4.0e-44, Sum P(2) = 4.0e-44
Identities = 93/230 (40%), Positives = 126/230 (54%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 XXXXXXXXVDRDLS------ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ ++ S N + + + +L L + VFVANLD
Sbjct: 155 RAMQKVMATTGGMGMGPGGPGMITIPPSILNNP-NIPNEIIHALQAG-RLGSTVFVANLD 212
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
YKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 213 YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 272
Query: 229 RITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 273 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 320
Score = 141 (54.7 bits), Expect = 4.0e-44, Sum P(2) = 4.0e-44
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 471 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 527
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
++ V P G+ G GL G + +A L + L + R LER
Sbjct: 528 SMERMV--PAGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 578
Score = 41 (19.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 436 RMGLVMDRMGSVERMGSGIERMGPLGL 462
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 353 (129.3 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 92/229 (40%), Positives = 124/229 (54%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 XXXXXXXXVDRDLSAL-----LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ + N N + + + +L L + VFVANLDY
Sbjct: 154 RAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAG-RLGSTVFVANLDY 212
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q LF+R
Sbjct: 213 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRP 272
Query: 230 ITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 273 MHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 319
Score = 141 (54.7 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 714 MKLSGREIDV 723
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 711
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 712 NGMKLSGREIDVRIDRNA 729
Score = 48 (22.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNN--QNLFE--RRITVRMD 235
R+ +E + +++ G GFG P++ V Q+I + + + + R+ + MD
Sbjct: 470 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMD 529
Query: 236 RVA--------DRLDGPV--RLPEGLKSIG 255
R+ +R+ GPV R+ GL+ +G
Sbjct: 530 RMVPTGMGASLERM-GPVMDRMATGLERMG 558
>ZFIN|ZDB-GENE-030131-6898 [details] [associations]
symbol:hnrnpm "heterogeneous nuclear
ribonucleoprotein M" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024667
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6898 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GeneTree:ENSGT00410000025635
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:BX649327
IPI:IPI01024026 Ensembl:ENSDART00000137689 ArrayExpress:F1R2E0
Bgee:F1R2E0 Uniprot:F1R2E0
Length = 715
Score = 268 (99.4 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 59/110 (53%), Positives = 74/110 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV FD P+EAVQ++SM N
Sbjct: 235 IFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFN 294
Query: 222 NQNLFERRITVRMDRVA-DRLD--GPVR---LPEGLKSIGMGLGANGAPL 265
Q LF R + V++D + + D P R LP GL +G+GLG G P+
Sbjct: 295 GQLLFNRVMHVKLDEKSLPKGDFAPPERAPALPRGLSGVGLGLGPGGQPI 344
Score = 150 (57.9 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 46/163 (28%), Positives = 74/163 (45%)
Query: 430 AYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNS--RYGSGG--NEMDXXXXX 485
A GM + L + + + D + + G+S R GSGG + D
Sbjct: 550 ASPMGMDRMNTGLDRMGSNFDRMGSGGMDRFSSGLDRMGSSMDRMGSGGIGGQFDRPGDM 609
Query: 486 XXXXXXXXXXXNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKF 545
+ + G + N + + V+NLP TW+ L+D F +CG +++
Sbjct: 610 DRGNFGSPFGGSGQGGGPGSGGANARKGCQ---IFVRNLPFDFTWKMLKDTFNSCGMVQY 666
Query: 546 AEIK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
A+IK GK G+VRFD+ TA+RA M+ R++G+ IDV
Sbjct: 667 ADIKMENGKSKGCGVVRFDNPETAERACRTMNGYRLNGREIDV 709
Score = 135 (52.6 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE L D GK RG A+VEF++ +L++KAV K+++ GR L +KE
Sbjct: 72 VGEVTYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKVNKHVMNGRPLKVKE 123
Score = 135 (52.6 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 37/103 (35%), Positives = 55/103 (53%)
Query: 138 FGNTYGLSPQF--LESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195
FG+ +G S Q S G N ++FV NL + K L++ F G V+ +I ++
Sbjct: 614 FGSPFGGSGQGGGPGSGGANARKGCQIFVRNLPFDFTWKMLKDTFNSCGMVQYADIKME- 672
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
+GKS+G G V FD+P A ++ +N L R I VR+DR A
Sbjct: 673 NGKSKGCGVVRFDNPETAERACRTMNGYRLNGREIDVRIDRNA 715
Score = 107 (42.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VFV+N+ Y V + L+++ + G+V VE +D +GKSRG VEF +++ +
Sbjct: 50 VFVSNIPYDVKWQTLKDLMKEKVGEVTYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKV 109
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
N + R + V+ D DG + E + G G G G P
Sbjct: 110 NKHVMNGRPLKVKEDP-----DGVISQREANRGHGGGGGGGGPP 148
Score = 67 (28.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
T+ V NL + W++L++ F G + A+I K +G +G V FD A +A+ M
Sbjct: 234 TIFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRG-MGTVTFDMPIEAVQAVSM 292
Query: 572 MDRTRIDGKIIDV 584
+ + +++ V
Sbjct: 293 FNGQLLFNRVMHV 305
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 260 (96.6 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 59/111 (53%), Positives = 74/111 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 134 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 193
Query: 222 NQNLFERRITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLGANGAPL 265
Q LF+R + V+MD + D D +LP GL IGMGLG G P+
Sbjct: 194 GQFLFDRPMHVKMDDKSVPHEDYRSHDSKTPQLPRGLGGIGMGLGPGGQPI 244
Score = 153 (58.9 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 536 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 595
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 596 IKISGREIDV 605
Score = 142 (55.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 534 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 592
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 593 MNGIKISGREIDVRLDRNA 611
Score = 134 (52.2 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE
Sbjct: 61 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKE 112
Score = 116 (45.9 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P N+VF++N+ Y + + ++++ R G+V VE+ D +GKSRG G VEF +
Sbjct: 34 PNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKK 93
Query: 216 SISMLNNQNLFERRITVRMD 235
++ +N +L R + ++ D
Sbjct: 94 ALETMNKYDLSGRPLNIKED 113
Score = 84 (34.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIG 555
G ++ R++ +++ T+ V NL + W++L++ F G +K A+IK GK +G
Sbjct: 116 GENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMG 175
Query: 556 LVRFDSEWTAKRAIDMMD 573
V F+ A +AI M +
Sbjct: 176 TVTFEQAIEAVQAISMFN 193
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 277 (102.6 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 226 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 280
Score = 141 (54.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 124 (48.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 123 (48.4 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKE 145
Score = 104 (41.7 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
Score = 75 (31.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDI 554
G + R+M ++ + TV V NL + W++L++ F G + A+I K +G I
Sbjct: 149 GEHARRAMQKAGRLG-STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG-I 206
Query: 555 GLVRFDSEWTAKRAIDMMD 573
G V F+ A +AI M +
Sbjct: 207 GTVTFEQSIEAVQAISMFN 225
Score = 53 (23.7 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 27/116 (23%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 431 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 487
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
+D V P G+ G GL G + +A L + L + R LER
Sbjct: 488 SMDRMV--PTGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 538
Score = 41 (19.5 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 396 RMGLVMDRMGSVERMGSGIERMGPLGL 422
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 277 (102.6 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 226 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 280
Score = 141 (54.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 124 (48.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 123 (48.4 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKE 145
Score = 104 (41.7 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
Score = 75 (31.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDI 554
G + R+M ++ + TV V NL + W++L++ F G + A+I K +G I
Sbjct: 149 GEHARRAMQKAGRLG-STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG-I 206
Query: 555 GLVRFDSEWTAKRAIDMMD 573
G V F+ A +AI M +
Sbjct: 207 GTVTFEQSIEAVQAISMFN 225
Score = 53 (23.7 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 27/116 (23%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 431 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 487
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
+D V P G+ G GL G + +A L + L + R LER
Sbjct: 488 SMDRMV--PTGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 538
Score = 41 (19.5 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 396 RMGLVMDRMGSVERMGSGIERMGPLGL 422
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 277 (102.6 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 226 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 280
Score = 141 (54.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 124 (48.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 123 (48.4 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKE 145
Score = 104 (41.7 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
Score = 75 (31.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDI 554
G + R+M ++ + TV V NL + W++L++ F G + A+I K +G I
Sbjct: 149 GEHARRAMQKAGRLG-STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG-I 206
Query: 555 GLVRFDSEWTAKRAIDMMD 573
G V F+ A +AI M +
Sbjct: 207 GTVTFEQSIEAVQAISMFN 225
Score = 53 (23.7 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 27/116 (23%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 431 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 487
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
+D V P G+ G GL G + +A L + L + R LER
Sbjct: 488 SMDRMV--PTGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 538
Score = 41 (19.5 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 396 RMGLVMDRMGSVERMGSGIERMGPLGL 422
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 277 (102.6 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 180 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 239
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 240 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 294
Score = 141 (54.7 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 629 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 688
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 689 MKLSGREIDV 698
Score = 124 (48.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 628 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 686
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 687 NGMKLSGREIDVRIDRNA 704
Score = 123 (48.4 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE
Sbjct: 108 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKE 159
Score = 104 (41.7 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 85 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 144
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 145 LNKHSLSGRPLKVKED 160
Score = 75 (31.5 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDI 554
G + R+M ++ + TV V NL + W++L++ F G + A+I K +G I
Sbjct: 163 GEHARRAMQKAGRLG-STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG-I 220
Query: 555 GLVRFDSEWTAKRAIDMMD 573
G V F+ A +AI M +
Sbjct: 221 GTVTFEQSIEAVQAISMFN 239
Score = 48 (22.0 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 445 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 501
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
++ V P G+ G GL G + +A L + L + R LER
Sbjct: 502 GMERMV--PAGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 552
Score = 41 (19.5 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 410 RMGLVMDRMGSVERMGSGIERMGPLGL 436
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 277 (102.6 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 219 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 278
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 279 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 333
Score = 141 (54.7 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 668 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 727
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 728 MKLSGREIDV 737
Score = 124 (48.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 667 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 725
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 726 NGMKLSGREIDVRIDRNA 743
Score = 115 (45.5 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE+L D GK R S +VEF+ + ++KA +++ GR L +KE
Sbjct: 147 VGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEVLNKHSLSGRPLKVKE 198
Score = 92 (37.4 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSR VEF ++ +
Sbjct: 124 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEV 183
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 184 LNKHSLSGRPLKVKED 199
Score = 75 (31.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDI 554
G + R+M ++ + TV V NL + W++L++ F G + A+I K +G I
Sbjct: 202 GEHARRAMQKAGRLG-STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG-I 259
Query: 555 GLVRFDSEWTAKRAIDMMD 573
G V F+ A +AI M +
Sbjct: 260 GTVTFEQSIEAVQAISMFN 278
Score = 49 (22.3 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 484 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 540
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
++ V P G+ G GL G + +A L + L + R LER
Sbjct: 541 SMERMV--PAGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 591
Score = 41 (19.5 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 449 RMGLVMDRMGSVERMGSGIERMGPLGL 475
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 315 (115.9 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 84/214 (39%), Positives = 116/214 (54%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 100 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHAR 159
Query: 115 XXXXXXXXVDR------DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ N N + + + +L L + VFVANLD
Sbjct: 160 RAMQKVMAAGGMGIGPGPGGPGMINIPPSILNNPNIPNEIIHALQAG-RLGSTVFVANLD 218
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
YKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 219 YKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFNGQLLFDR 278
Query: 229 RITVRMD-RVADRLDG-PVRLPEGLKSIGM-GLG 259
+ V+MD R + D P P+ L +GM G+G
Sbjct: 279 PMHVKMDERAFPKGDFFPPERPQQLPRMGMEGMG 312
Score = 141 (54.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+VRF+S A+RA MM+
Sbjct: 634 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMNG 693
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 694 IQLRGREIDV 703
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V F+ P A ++ M+
Sbjct: 633 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVRFESPEVAERACRMM 691
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 692 NGIQLRGREIDVRIDRNA 709
Score = 110 (43.8 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 30/106 (28%), Positives = 54/106 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 77 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 136
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN-GAP 264
LN +L R + V+ D D + + + + GMG+G G P
Sbjct: 137 LNKHSLGGRPLKVKED--PDGEHARRAMQKVMAAGGMGIGPGPGGP 180
Score = 68 (29.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
TV V NL + W++L++ F G + A+I K +G IG V F+ A +AI M
Sbjct: 211 TVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRG-IGTVTFEQAIEAVQAISM 269
Query: 572 MD 573
+
Sbjct: 270 FN 271
Score = 43 (20.2 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240
R+ +E + +++ G GFG ++ V + ++ R+ MDR+
Sbjct: 457 RMGPAIERMGSGIERMGSGIGFGIERMGAAIDRVGTT--MDRMGSGVERMGSGMDRMGIG 514
Query: 241 LDGPVRLPEGLKSIGMG 257
++ V P G+ + GMG
Sbjct: 515 MERMV--PAGMGT-GMG 528
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 274 (101.5 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
Identities = 73/186 (39%), Positives = 101/186 (54%)
Query: 92 MHRFETKGRKLVIKEAVEDKXXXXXXXXXXXVDR-----DLSALLQNNSSKFGNTYGLSP 146
M++++ GR L IKE + + D+ + L N N + P
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPP 60
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+ + +L L + +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV
Sbjct: 61 EVISNLQAG-RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVT 119
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVA----DRL--DGPV-RLPEGLKSIGMGLG 259
F+ +EAVQ+ISM N Q LF+R + V+MD + D D +LP GL IGMGLG
Sbjct: 120 FEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEDYRSHDSKTPQLPRGLGGIGMGLG 179
Query: 260 ANGAPL 265
G P+
Sbjct: 180 PGGQPI 185
Score = 153 (58.9 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 362 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 421
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 422 IKISGREIDV 431
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 360 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 418
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 419 MNGIKISGREIDVRLDRNA 437
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 277 (102.6 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 43 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 102
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 103 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 157
Score = 141 (54.7 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 474 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 533
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 534 MKLSGREIDV 543
Score = 124 (48.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 473 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 531
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 532 NGMKLSGREIDVRIDRNA 549
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ +E + +++ G GFG P++ V Q+I + + R+ ++R+
Sbjct: 290 RMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSG---VERMGPAIERMGL 346
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLER 295
++ V P G+ G GL G + +A L + L + R LER
Sbjct: 347 GMERMV--PAGM---GAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLER 397
Score = 41 (19.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 RMDRVADRLDGPVRLPEGLKSIG-MGL 258
RM V DR+ R+ G++ +G +GL
Sbjct: 255 RMGLVMDRMGSVERMGSGIERMGPLGL 281
Score = 38 (18.4 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 85 VRKAVNKMHRFETKGRKLVIKE 106
++KA +++ GR L +KE
Sbjct: 1 MKKAAEVLNKHSLSGRPLKVKE 22
>UNIPROTKB|F1M275 [details] [associations]
symbol:F1M275 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AC113901 IPI:IPI00779245 Ensembl:ENSRNOT00000059658
ArrayExpress:F1M275 Uniprot:F1M275
Length = 657
Score = 288 (106.4 bits), Expect = 6.2e-31, Sum P(2) = 6.2e-31
Identities = 85/230 (36%), Positives = 121/230 (52%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTY+E+L D GK RG A+VEF+ + ++KAV +++ GR L ++E + +
Sbjct: 47 VGEVTYMELLMDAEGKSRGCAVVEFKMEESMKKAVEVLNKHS--GRPLKVEEDPDGEHAR 104
Query: 115 XXXXXXXXVDRDLS------ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ ++ S N +S + + +L L + VFVA
Sbjct: 105 RAMQKVMATKAGMGMGPGGPGMINIPPSSLNNL-NISNETIHALQAG-RLGSTVFVALWI 162
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
K+ KKL+EVF +AG V +I DKDGKS G GTV F+ EAVQ++ M N Q LF+R
Sbjct: 163 IKL-AKKLKEVFSMAGAVVRADILEDKDGKSHGLGTVTFEQSTEAVQALFMFNGQLLFDR 221
Query: 229 RITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
+ V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 222 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGG-PID--ANHL 268
Score = 121 (47.7 bits), Expect = 6.2e-31, Sum P(2) = 6.2e-31
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGDIGLVRFDSEWTAKRAIDMMDRT 575
+ V+ P TW+ L+DKF CG + + +IK GK V+F+S A+RA MM+
Sbjct: 589 IFVRKFPFDFTWKMLKDKFNECGHVLYTDIKMENGKSKGYSVKFESPEVAERACRMMNGM 648
Query: 576 RIDGKIIDV 584
++ G+ IDV
Sbjct: 649 KLSGREIDV 657
Score = 57 (25.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ ++ + ++++ G GF P++ V Q+I + + R+ ++R+
Sbjct: 414 RMDQTMQRIGSSVERMGAYMGFSLERIVAPIDRVDQTIERMGSG---VERMDPAIERIGL 470
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQD-VANWLLQEKVQKLSLIISNRNTKEVLER 295
+D V P G+ G GL G P+ D +A L + L LI+ R LER
Sbjct: 471 SMDQMV--PTGM---GSGLEHMG-PIMDRMATGLERMGTNNLELIVLERMGANNLER 521
>UNIPROTKB|F1LYG7 [details] [associations]
symbol:F1LYG7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AC113901 IPI:IPI00360639 Ensembl:ENSRNOT00000010809
ArrayExpress:F1LYG7 Uniprot:F1LYG7
Length = 678
Score = 279 (103.3 bits), Expect = 8.9e-30, Sum P(2) = 8.9e-30
Identities = 80/220 (36%), Positives = 115/220 (52%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXX 114
VG+VTY+E+L D GK RG A+VEF+ + ++KAV +++ KGR L ++E + +
Sbjct: 92 VGEVTYMELLMDAEGKSRGCAVVEFKMEESMKKAVEVLNKH--KGRPLKVEEDPDGEHAR 149
Query: 115 XXXXXXXXVDRDLS------ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ ++ S N +S + + +L L + VFVA
Sbjct: 150 RAMQKVMATKAGMGMGPGGPGMINIPPSSLNNL-NISNETIHALQAG-RLGSTVFVALWI 207
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
K+ KKL+EVF +AG V +I DKDGKS G GTV F+ EAVQ++ M N Q LF+R
Sbjct: 208 IKL-AKKLKEVFSMAGAVVRADILEDKDGKSHGLGTVTFEQSTEAVQALFMFNGQLLFDR 266
Query: 229 RITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANG 262
+ V+MD R + D P +LP GL IGMG G
Sbjct: 267 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGWNNTG 306
Score = 121 (47.7 bits), Expect = 8.9e-30, Sum P(2) = 8.9e-30
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGDIGLVRFDSEWTAKRAIDMMDRT 575
+ V+ P TW+ L+DKF CG + + +IK GK V+F+S A+RA MM+
Sbjct: 610 IFVRKFPFDFTWKMLKDKFNECGHVLYTDIKMENGKSKGYSVKFESPEVAERACRMMNGM 669
Query: 576 RIDGKIIDV 584
++ G+ IDV
Sbjct: 670 KLSGREIDV 678
Score = 57 (25.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV-QSISMLNNQNLFERRITVRMDRVAD 239
R+ ++ + ++++ G GF P++ V Q+I + + R+ ++R+
Sbjct: 430 RMDQTMQRIGSSVERMGAYMGFSLERIVAPIDRVDQTIERMGSG---VERMDPAIERIGL 486
Query: 240 RLDGPVRLPEGLKSIGMGLGANGAPLQD-VANWLLQEKVQKLSLIISNRNTKEVLER 295
+D V P G+ G GL G P+ D +A L + L LI+ R LER
Sbjct: 487 SMDQMV--PTGM---GSGLEHMG-PIMDRMATGLERMGTNNLELIVLERMGANNLER 537
>UNIPROTKB|H0YN19 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC066612
EMBL:AC090526 HGNC:HGNC:17940 Ensembl:ENST00000558395
Uniprot:H0YN19
Length = 290
Score = 265 (98.3 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 59/111 (53%), Positives = 75/111 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 16 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 75
Query: 222 NQNLFERRITVRMDRVA---DRL---DGPV-RLPEGLKSIGMGLGANGAPL 265
Q LF+R + V+MD + + DG +LP GL IGMGLG G P+
Sbjct: 76 GQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLGGIGMGLGPGGQPI 126
Score = 80 (33.2 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDI 543
M + + + + V+NLP +TWQ+L++KF CG +
Sbjct: 254 MRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHV 289
>UNIPROTKB|F1LSJ5 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 PANTHER:PTHR23003:SF6 IPI:IPI00559961
ProteinModelPortal:F1LSJ5 Ensembl:ENSRNOT00000043570 Uniprot:F1LSJ5
Length = 242
Score = 277 (102.6 bits), Expect = 9.4e-24, P = 9.4e-24
Identities = 65/117 (55%), Positives = 77/117 (65%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 21 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 80
Query: 222 NQNLFERRITVRMD-RVADRLD-----GPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
Q LF+R + V+MD R + D P +LP GL IGMGLG G P+ AN L
Sbjct: 81 GQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID--ANHL 135
>UNIPROTKB|G5E6C3 [details] [associations]
symbol:G5E6C3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02030369 Ensembl:ENSBTAT00000055880 Uniprot:G5E6C3
Length = 507
Score = 218 (81.8 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 56/109 (51%), Positives = 68/109 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYK KL+EVF +AG V +I DKDGKSRG GTV F+ EA+Q+ISM +
Sbjct: 64 VFVANLDYK----KLKEVFSMAGLVVRADILEDKDGKSRGIGTVTFEQSTEAMQTISMFS 119
Query: 222 NQNLFERRITVRMDRVA---DRLDGPV---RLPEGLKSIGMGLGANGAP 264
Q LF R + +MD+ A + P +LP GL IGMGLG G P
Sbjct: 120 GQLLF-RPMHGKMDKKALPKGDIFPPEHLQQLPHGLGGIGMGLGPGGQP 167
Score = 108 (43.1 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V NLP TW+ L+DKF C + +A IK GK +V+F+ A+RA MM+
Sbjct: 432 IFVTNLPFDFTWKMLKDKFNECSHVLYATIKMENGKPKGCSVVKFELPEVAERACWMMNG 491
Query: 575 TRIDGKIIDV 584
++ G+ DV
Sbjct: 492 MKLSGRKTDV 501
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 162 (62.1 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 38/113 (33%), Positives = 64/113 (56%)
Query: 132 QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191
+ +++FG++ +SP S G + ++FV NL Y V + L+++FR AG V +I
Sbjct: 153 REQNARFGSS-SVSPS-ASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADI 210
Query: 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244
++++G+SRG G V EA+ +I ML+N + R + VR+DR A P
Sbjct: 211 QMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKSKP 263
Score = 136 (52.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 51/206 (24%), Positives = 85/206 (41%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXXX 115
G V +I + G+ RG IV S A+ +H + GR L ++ D+
Sbjct: 203 GSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL---DRFAHH 259
Query: 116 XXXXXXXVDRDLS--ALLQ-NNSSKFGNTYGLSPQFLESLGINC----PLINKVFVANLD 168
+ A +Q SS + G + Q +E L + P + ++V NL
Sbjct: 260 KSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQ-VEDLVYHAYPHGPCSDCIYVGNLP 318
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ ++ L ++F G V IA + G+S+GFG V+F++ +A SI LN R
Sbjct: 319 WATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGR 378
Query: 229 RITVRMDRVADRLDGPVRLPEGLKSI 254
+ + A L + GL S+
Sbjct: 379 PLQLSYAHYATPLPAVPTVLSGLPSV 404
Score = 110 (43.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y+V +L+E G V N EI +G S+G +E+ EA +I L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 221 NNQNLFERRITVRMDR 236
+NQ R + +R DR
Sbjct: 138 SNQKFMGRLVYIREDR 153
Score = 104 (41.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 35/97 (36%), Positives = 50/97 (51%)
Query: 497 NPRAGLDSNRSMNQSSN---IERDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIK--- 549
N R G S+ S + SSN E D + V NLP + WQ+L+D FR G + A+I+
Sbjct: 156 NARFG-SSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ 214
Query: 550 -GKG-DIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
G+ IG+V S A AI M+ T G+ ++V
Sbjct: 215 EGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEV 251
Score = 80 (33.2 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
+ VG+V EILN G +G AI+E+ + + R A+ + + GR + I+E
Sbjct: 97 MGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIRE 151
Score = 69 (29.3 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAID 570
D + V NLP + + L D F + G + A I + KG G+V+F++E A +I+
Sbjct: 310 DCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKG-FGVVQFENENDAASSIE 368
Query: 571 MMDRTRIDGKIIDVTF 586
++ R G+ + +++
Sbjct: 369 KLNGYRYGGRPLQLSY 384
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 122 (48.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKR 567
N + V+VKNLP ++ WQ L+D F+ CG++ A+++ GD G V F R
Sbjct: 257 NRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHR 316
Query: 568 AIDMMDRTRIDGKIIDV 584
AI+ + I+G ++DV
Sbjct: 317 AIEKYNGYSIEGNVLDV 333
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 40/169 (23%), Positives = 68/169 (40%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXXX 115
G+V + ++ D G GS V F + +A+ K + + +G L +K K
Sbjct: 285 GNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKS----KESVH 340
Query: 116 XXXXXXXVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
VD + N ++ +F E++ ++ +NL + +
Sbjct: 341 NHSDGDDVDIPMDDSPVNEEAR---------KFTENVVGGGERNRLIYCSNLPFSTAKSD 391
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
L ++F GKV N E+ D G G VE+D+ +A I LNN N
Sbjct: 392 LYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLNNYN 440
Score = 113 (44.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N N +FV NL Y + L E F GKV +I + G RG GTVEF + +
Sbjct: 155 VNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDV 213
Query: 214 VQSISMLNNQNLFERRITVRMD 235
++I + +R+I VR D
Sbjct: 214 DRAIRQYDGAFFMDRKIFVRQD 235
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V V NL V+ + L+++F+ G V + ++ LD DG S G GTV F + ++I
Sbjct: 261 HEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEK 320
Query: 220 LNNQNLFERRITVRM-DRVADRLDGP-VRLP 248
N ++ + V+ + V + DG V +P
Sbjct: 321 YNGYSIEGNVLDVKSKESVHNHSDGDDVDIP 351
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 515 ERDTVVV-KNLPPTITWQELRDKFRNCGDIKFAEIK--GKG---DIGLVRFDSEWTAKRA 568
ER+ ++ NLP + +L D F G + AE++ KG I +V +D+ A
Sbjct: 373 ERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVC 432
Query: 569 IDMMDRTRIDGKIIDVTF 586
I+ ++ G +D+++
Sbjct: 433 IERLNNYNYGGCDLDISY 450
Score = 56 (24.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
S +G V +I+ G RG VEF + D V +A+ + RK+ +++
Sbjct: 182 SQIGKVVRADIITS-RGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQ 234
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 115 (45.5 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F KRA++ +D T +
Sbjct: 109 LIVENLSSRCSWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEV 168
Query: 578 DGKII 582
+G+ I
Sbjct: 169 NGRKI 173
Score = 110 (43.8 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+++V+V L Y+ EK + F+ GK+ V++ G+G VEFD P +A ++
Sbjct: 1 MSRVYVGKLSYRAREKDVERFFKGYGKILEVDL-------KNGYGFVEFDDPRDADDAVY 53
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
LN ++L +R+ V + R DG R + G G G G
Sbjct: 54 DLNGKDLCGKRVIVE-HTIGQRRDGGNRSGRSNR-YGRGGGGGG 95
Score = 42 (19.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 60 YVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
Y +IL D G VEF P AV ++ + G++++++ +
Sbjct: 25 YGKILEVDL--KNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTI 71
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 122 (48.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 21/74 (28%), Positives = 48/74 (64%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+++ NLD +D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEM 352
Query: 221 NNQNLFERRITVRM 234
N + L + +++ +
Sbjct: 353 NGRILGSKPLSIAL 366
Score = 120 (47.3 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-HPV--EAVQSIS 218
V++ N +D+++L++VF GK +V++ D GKS+GFG V FD H +AV+ ++
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 219 M--LNNQNLFERRITVRMDRVAD 239
+N Q +F R +++R A+
Sbjct: 252 GRDINGQLIFVGRAQKKVERQAE 274
Score = 102 (41.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLKGCKVFVGRFKNRKDREAE 181
Score = 79 (32.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 211 SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 78 (32.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKGD-IGLVRFDSEWT 564
+S E V +KN + + L+D F G +K + GK G V FDS
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 565 AKRAIDMMDRTRIDGKIIDV 584
AK+A++ M+ I+G++I V
Sbjct: 243 AKKAVEEMNGRDINGQLIFV 262
Score = 77 (32.2 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
Score = 72 (30.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 117 HFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNR 175
Query: 111 KXXXXXXXXXXXVDRDLSALLQNNSSKFGNTY 142
K DR+ A L++ +S+F N Y
Sbjct: 176 K------------DRE--AELRSKASEFTNVY 193
Score = 65 (27.9 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR++F + G I ++ + KG GL+ F S A +A+ M+
Sbjct: 297 IKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKG-FGLICFSSPEDATKAMTEMNGR 355
Query: 576 RIDGKIIDV 584
+ K + +
Sbjct: 356 ILGSKPLSI 364
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 122 (48.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 21/74 (28%), Positives = 48/74 (64%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+++ NLD +D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEM 410
Query: 221 NNQNLFERRITVRM 234
N + L + +++ +
Sbjct: 411 NGRILGSKPLSIAL 424
Score = 120 (47.3 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-HPV--EAVQSIS 218
V++ N +D+++L++VF GK +V++ D GKS+GFG V FD H +AV+ ++
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 219 M--LNNQNLFERRITVRMDRVAD 239
+N Q +F R +++R A+
Sbjct: 310 GRDINGQLIFVGRAQKKVERQAE 332
Score = 102 (41.0 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
Score = 79 (32.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 78 (32.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKGD-IGLVRFDSEWT 564
+S E V +KN + + L+D F G +K + GK G V FDS
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 565 AKRAIDMMDRTRIDGKIIDV 584
AK+A++ M+ I+G++I V
Sbjct: 301 AKKAVEEMNGRDINGQLIFV 320
Score = 77 (32.2 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Score = 72 (30.4 bits), Expect = 6.0e-10, Sum P(3) = 6.0e-10
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 175 HFSAFGKILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNR 233
Query: 111 KXXXXXXXXXXXVDRDLSALLQNNSSKFGNTY 142
K DR+ A L++ +S+F N Y
Sbjct: 234 K------------DRE--AELRSKASEFTNVY 251
Score = 65 (27.9 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR++F + G I ++ + KG GL+ F S A +A+ M+
Sbjct: 355 IKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKG-FGLICFSSPEDATKAMTEMNGR 413
Query: 576 RIDGKIIDV 584
+ K + +
Sbjct: 414 ILGSKPLSI 422
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 155 (59.6 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 46/132 (34%), Positives = 74/132 (56%)
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
R +SA+ Q++ S +++ PQF S + P +K+F+ L + VDE+ L++ F G
Sbjct: 11 RRVSAIPQHSIS---SSFHFLPQFCTSSSAS-PS-SKLFIGGLSWSVDEQSLKDAFSSFG 65
Query: 185 KVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER--RITVRMDRVADRL 241
+V V IA DK G+SRGFG V+F +A+ + ++ + L R RI+ ++RV
Sbjct: 66 EVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRG-- 123
Query: 242 DGPVRLPEGLKS 253
GPV +P KS
Sbjct: 124 -GPVVVPRLGKS 134
>UNIPROTKB|H0YKS1 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC066612 EMBL:AC090526 HGNC:HGNC:17940
Ensembl:ENST00000560172 Uniprot:H0YKS1
Length = 126
Score = 154 (59.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEW 563
M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 40 MRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPE 99
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 100 SAEKACRIMNGIKISGREIDV 120
Score = 142 (55.0 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 49 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 107
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 108 MNGIKISGREIDVRLDRNA 126
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 136 (52.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q ++S+ + +V+V NL Y V L++ R AG V ++ L +G S+G G VE
Sbjct: 98 QMMQSVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVE 157
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-RLDG-PVRLPEGLKSIGMGLGANG 262
+ +A +++ L+NQNL R + VR DR + R G P R G G G G G
Sbjct: 158 YATREQAQNAVNTLSNQNLMNRLVYVREDREPEPRFSGGPSRGDFGGPGRG-GFGGYG 214
Score = 111 (44.1 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 33/105 (31%), Positives = 51/105 (48%)
Query: 161 KVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V+NL + V + L+++FR A G V ++ D G+ +G G V F+ P +A +I
Sbjct: 223 QLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAI 282
Query: 218 SMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + R + VR DR A GP G G G G G
Sbjct: 283 QQFNGYDWQGRTLEVREDRFAG--SGPGMGRGGYGGFG-GRGGFG 324
Score = 110 (43.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V NL + L ++F GKVE EI + +G+SRG G V+FD+ A SI+
Sbjct: 381 NTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTAETSIAK 440
Query: 220 LNNQNLFERRITVRMDRVADRLDGP 244
R + + + GP
Sbjct: 441 FTGYQYGGRPLGITFVKYLTPAQGP 465
Score = 106 (42.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G V ++ D +G+P+GS IV F+SPD R A+ + + ++ +GR L ++E
Sbjct: 249 GTVIRADVHTDASGRPKGSGIVAFESPDDARNAIQQFNGYDWQGRTLEVRE 299
Score = 81 (33.6 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKG-DIGLVRFDSEWTA 565
S + +T+ V+NLP + +L D F G ++ AEI+ G+ G+V+FD+ TA
Sbjct: 375 SGGEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTA 434
Query: 566 KRAIDMMDRTRIDGKIIDVTF 586
+ +I + G+ + +TF
Sbjct: 435 ETSIAKFTGYQYGGRPLGITF 455
Score = 76 (31.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 521 VKNLPPTITWQELRDKFRNC---GDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V NLP + WQ+L+D FR G + A++ + KG G+V F+S A+ AI
Sbjct: 226 VSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGS-GIVAFESPDDARNAIQQ 284
Query: 572 MDRTRIDGKIIDV 584
+ G+ ++V
Sbjct: 285 FNGYDWQGRTLEV 297
Score = 70 (29.7 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 21 MFQRIETGAPLEVPVVMDLIQGDASLYQISH-LSTVGDVTYVEILNDDTGKPRGSAIVEF 79
M Q + + + V + + D + + + GDV + ++L G +G IVE+
Sbjct: 99 MMQSVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEY 158
Query: 80 QSPDLVRKAVNKMHRFETKGRKLVIKE 106
+ + + AVN + R + ++E
Sbjct: 159 ATREQAQNAVNTLSNQNLMNRLVYVRE 185
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 135 (52.6 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQ 83
Score = 37 (18.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSR 471
GN+ ++ S PS+ Y R NM +++
Sbjct: 105 GNSSPTSTS-PSSRYERTMDNMTSSAQ 130
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 135 (52.6 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 9 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 68
Query: 222 NQNLFERRITVR 233
L+ R I ++
Sbjct: 69 GIKLYGRPIKIQ 80
Score = 37 (18.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSR 471
GN+ ++ S PS+ Y R NM +++
Sbjct: 102 GNSSPTSTS-PSSRYERTMDNMTSSAQ 127
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 112 (44.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V+ LPPT +WQ+L+D R+ GD+ +A++ G G+V F K A+ +D T+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGT-GVVEFTRYEDVKYAVRKLDDTK 181
Score = 99 (39.9 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
KV+V NL V EK++ ++F G+++ V+I K G+ F VEF+ +A ++
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 221 NNQNLFERRITVRMDR-VADRLDGPVRLPEG 250
+ RRI V R V R G L +G
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPGGRPLQDG 97
Score = 50 (22.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 28 GAPLEVPVVMDLIQGDASLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVR 86
G + V + + GD ++ + G + YV+I +G+ A VEF+
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAE 60
Query: 87 KAVNKMHRFETKGRKLVIK 105
AV +E GR++ ++
Sbjct: 61 DAVRARDGYEFDGRRIRVE 79
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 112 (44.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V+ LPPT +WQ+L+D R+ GD+ +A++ G G+V F K A+ +D T+
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGT-GVVEFTRYEDVKYAVRKLDDTK 181
Score = 99 (39.9 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
KV+V NL V EK++ ++F G+++ V+I K G+ F VEF+ +A ++
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 221 NNQNLFERRITVRMDR-VADRLDGPVRLPEG 250
+ RRI V R V R G L +G
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPGGRPLQDG 97
Score = 50 (22.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 28 GAPLEVPVVMDLIQGDASLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVR 86
G + V + + GD ++ + G + YV+I +G+ A VEF+
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAE 60
Query: 87 KAVNKMHRFETKGRKLVIK 105
AV +E GR++ ++
Sbjct: 61 DAVRARDGYEFDGRRIRVE 79
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 120 (47.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++A D+ G SRGFG V F+ A Q+I+
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAIN 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 113 (44.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V NL VDE+ L+++F GK+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+V++ D G SR FG V F+ EA +++ +N + + R
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 69 (29.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKGD---IGLVRFDSEWTAKRA 568
+E + VKNLP + Q L+D F G + ++ G G V F+ A++A
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 569 IDMMDRTRIDGKII 582
+ M+ + G+++
Sbjct: 248 VVHMNGKEVSGRLL 261
Score = 65 (27.9 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY ST G++ ++ D+ G RG V F++ + ++A+N M+
Sbjct: 108 DSIDNKA-LYDT--FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 62 (26.9 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 27 TGAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KG+ + I + D
Sbjct: 64 DAERALDTMN-FEMLKGQPIRIMWSQRD 90
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAE 547
VKNL +I +LR +F G I A+
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAK 324
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 118 (46.6 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VF+ NL Y ++ + L+++F+ G V ++ LD +G SRGFG+V + E +++I
Sbjct: 220 EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTF 279
Query: 221 NNQNLFERRITVRMDRVADR 240
N + R + VR R R
Sbjct: 280 NGMEVEGRVLEVREGRFNKR 299
Score = 114 (45.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ-SIS 218
N +FV NL + + L+E+F G+V +I K G RG GTVEF E+VQ +IS
Sbjct: 122 NSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKN-ESVQDAIS 179
Query: 219 MLNNQNLFERRITVRMD 235
+ +R++ VR D
Sbjct: 180 KFDGALFMDRKLMVRQD 196
Score = 100 (40.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP ++ WQ L+D F+ CG + A+++ +G G V + +E RAID
Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRG-FGSVIYPTEDEMIRAIDTF 279
Query: 573 DRTRIDGKIIDV 584
+ ++G++++V
Sbjct: 280 NGMEVEGRVLEV 291
Score = 68 (29.0 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 54 TVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
TVG+V +I+ G RG VEF + V+ A++K RKL++++
Sbjct: 144 TVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQ 195
Score = 41 (19.5 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK 549
+ NLP + +L D F G I AE+K
Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELK 381
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 128 (50.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L E F G + + ++A+D G+S+G+G V++D A +I
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAID 191
Query: 219 MLNNQNLFERRITV 232
LN L ++++ V
Sbjct: 192 KLNGMLLNDKQVYV 205
Score = 118 (46.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ ++V NLD V + KLRE F G + + ++ D G SRG G V F P EA ++I+
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 220 LNNQNLFERRITVRM-DRVADR 240
+N + + + + V + R DR
Sbjct: 387 MNGKMIVTKPLYVALAQRKEDR 408
Score = 103 (41.3 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL + +++L +VF G + I D +GKS+GFG V F++ +A +++ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 222 NQNLFER 228
+ ++
Sbjct: 286 GKTFDDK 292
Score = 69 (29.3 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 519 VVVKNLPPTITWQELRDKF------RNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
V VKNL +++ +EL F +C ++ E K KG G V F++ A RA+D +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG-FGFVNFENSDDAARAVDAL 284
Query: 573 DRTRIDGK 580
+ D K
Sbjct: 285 NGKTFDDK 292
Score = 62 (26.9 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRF 95
+D D+ L++ + G V V + D T + G V + +P +A+N+++
Sbjct: 52 LDATVTDSQLFEA--FTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFM 109
Query: 96 ETKGRKLVIKEAVED 110
GR + + +V D
Sbjct: 110 ALNGRAIRVMYSVRD 124
Score = 57 (25.1 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 506 RSMNQSSNIERDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVR 558
+S+ ++++ + + + VKNL ++T +LR+ F G I ++ +G G V
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS-GFVA 373
Query: 559 FDSEWTAKRAIDMMDRTRIDGKII 582
F + A RAI T ++GK+I
Sbjct: 374 FSTPEEATRAI-----TEMNGKMI 392
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 113 (44.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV N+ +D++KL+E+F G E+V++ D GKS+GFG V ++ A +++ L+
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 222 NQNLFERRITV-RMDRVADRL 241
+++ + + V R + +RL
Sbjct: 97 GKSIDGKVLYVGRAQKKIERL 117
Score = 97 (39.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD ++++KL+E F G + ++ ++ G+ +GFG V F EA +++ +N
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMN 198
Query: 222 NQNLFERRITVRMDRVADR 240
+ + + + V + + R
Sbjct: 199 GRIVGSKPLHVTLGQARRR 217
Score = 87 (35.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL TI ++L+++F + G I A++ +GKG G+V F S A +A+D M+
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAVDEMN 198
Query: 574 RTRIDGKIIDVT 585
+ K + VT
Sbjct: 199 GRIVGSKPLHVT 210
Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D +GK +G V +++ + +KAV +H G+ L + A
Sbjct: 59 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 110
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 132 (51.5 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 35/89 (39%), Positives = 49/89 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y VD + L +F AG VE E+ ++D +SRGFG V EA +++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N+ + RR+TV +R A R P R P
Sbjct: 174 FNSFEVNGRRLTV--NRAAPRGSRPERQP 200
Score = 121 (47.7 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V NL + VD +L +F GKV + + D++ G+SRGFG V+ + E +I+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 220 LNNQNLFERRITVRM 234
L+ QNL R I V +
Sbjct: 268 LDGQNLEGRAIKVNV 282
Score = 83 (34.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 56 GDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V E++ N DT + RG V + + KAV K + FE GR+L + A
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 125 (49.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISM 219
K+FV L+++ E+ L +VF G+V V + D++ K SRGFG V F++P +A ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 220 LNNQNLFERRITV 232
+N +++ R+I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 39 (18.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 452 QSAPSTDYSRNASNMYGNSRYGSGGNEMD 480
QS+ S DY + YG+ SGG+ D
Sbjct: 132 QSSGSRDYYGRSHGSYGDR---SGGSYRD 157
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 117 (46.2 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-HPV--EAVQSI- 217
VFV N +D++KL+E+F G E+V++ D GKS+GFG V ++ H +AV +
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 218 -SMLNNQNLFERRITVRMDRVAD 239
+N + L+ R +++R+A+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAE 283
Score = 100 (40.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KL+E F G + ++ ++ G+ +GFG V F +A +++ +N
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMN 362
Query: 222 NQNLFERRITVRMDRVADR 240
+ + + + V + + R
Sbjct: 363 GRTVGSKPLHVTLGQARCR 381
Score = 96 (38.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D + L +F G + + ++ D +G S+G+ V FD A ++I
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 163
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 88 (36.0 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL TI ++L+++F + G I A++ +GKG G+V F S A +A+D M+
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKG-FGVVCFSSFEDATKAVDEMN 362
Query: 574 RTRIDGKIIDVT 585
+ K + VT
Sbjct: 363 GRTVGSKPLHVT 374
Score = 75 (31.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISML 220
++V +LD V E L + FR AG + I D +S G+G V F P +A +++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 221 NNQNLFERRITVRMDRVADRL 241
N + + + + DRL
Sbjct: 80 NFDLINGKPFRLMWSQPDDRL 100
Score = 73 (30.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G V+++ D +GK +G V +++ + +KAV +H G+ L
Sbjct: 212 DEKLKEI--FSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVL 269
Query: 103 VIKEA 107
+ A
Sbjct: 270 YVGRA 274
Score = 60 (26.2 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGD------IKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
V VKN + ++L++ F G I+ A K KG G VR+++ A++A+ +
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG-FGFVRYETHEAAQKAVLDL 259
Query: 573 DRTRIDGKIIDV 584
I+GK++ V
Sbjct: 260 HGKSINGKVLYV 271
Score = 41 (19.5 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH 93
G + + I D T P G V F+ P A+N M+
Sbjct: 42 GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 130 (50.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 35/129 (27%), Positives = 65/129 (50%)
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
R ++ +L N+ F + + LG ++V NL VDE+ L+++F G
Sbjct: 156 RTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFG 215
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDG 243
K+ +V++ D G SRGFG V F+ +A ++++ +N + + R + V R + +R +
Sbjct: 216 KILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNE 275
Query: 244 PVRLPEGLK 252
R E +K
Sbjct: 276 LKRRFEQMK 284
Score = 108 (43.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 108 (43.1 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NL+ +D K L + F G + + ++ D G SRGFG V F+ A +I
Sbjct: 98 VGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIR 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 87 (35.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G + V+++ DD+G RG V F+ + +KAV M+ E GR L + A
Sbjct: 212 SQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA 266
Score = 64 (27.6 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY ST G++ +++ DD G RG V F++ + + A+ M+
Sbjct: 108 DSIDNKA-LYDT--FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQNAIRTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 62 (26.9 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 28 GAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KG+ + I + D
Sbjct: 65 AERALDTMN-FEVIKGQPIRIMWSQRD 90
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL +I ++LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
Score = 59 (25.8 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSEWTAKRA 568
+E + VKNL + + L+D F G I ++ G G V F+ A++A
Sbjct: 188 LEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+ M+ + G+++ V
Sbjct: 248 VTDMNGKEVSGRLLYV 263
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 124 (48.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+V+V NL + VD +L ++F GKV + D++ G+SRGFG V E ++IS
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 220 LNNQNLFERRITVRM 234
L+ QNL R I V +
Sbjct: 305 LDGQNLEGRAIRVNV 319
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y V+ + L +F AG VE E+ +++ +SRGFG V EA ++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N +L R +TV ++ A R P R P
Sbjct: 211 FNRYDLNGRLLTV--NKAAPRGSRPERAP 237
Score = 78 (32.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 56 GDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V E++ N +T + RG V S D AV K +R++ GR L + +A
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 120 (47.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++A D+ G SRGFG V F+ A Q+I+
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAIN 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 113 (44.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V NL VDE+ L+++F GK+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+V++ D G SR FG V F+ EA +++ +N + + R
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 105 (42.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 69 (29.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKGD---IGLVRFDSEWTAKRA 568
+E + VKNLP + Q L+D F G + ++ G G V F+ A++A
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 569 IDMMDRTRIDGKII 582
+ M+ + G+++
Sbjct: 248 VVHMNGKEVSGRLL 261
Score = 65 (27.9 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY ST G++ ++ D+ G RG V F++ + ++A+N M+
Sbjct: 108 DSIDNKA-LYDT--FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 65 (27.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
S G + V+++ D++G R V F+ + +KAV M+ E GR L
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 62 (26.9 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 27 TGAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KG+ + I + D
Sbjct: 64 DAERALDTMN-FEMLKGQPIRIMWSQRD 90
Score = 57 (25.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL +I +LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 129 (50.5 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 35/127 (27%), Positives = 64/127 (50%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V NL VDE++L+++F GK+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKM 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D G SRGFG V F+ EA +++ +N + + R + V R + +R +
Sbjct: 218 LSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELK 277
Query: 246 RLPEGLK 252
R E +K
Sbjct: 278 RRFEQMK 284
Score = 114 (45.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ D+ G SRGFG V F+ A +IS
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAIS 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 23 QRIETGA-PLEVP-VVMDLIQGDASLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEF 79
+ +E GA +E + + + D ++ L S G + V+++ DD+G RG V F
Sbjct: 179 REVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNF 238
Query: 80 QSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ + +KAV M+ E GR L + A
Sbjct: 239 EKHEEAQKAVVNMNGREVSGRLLYVGRA 266
Score = 62 (26.9 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 28 GAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KG+ + I + D
Sbjct: 65 AERALDTMN-FEVIKGQPIRIMWSQRD 90
Score = 62 (26.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSEWTAKRA 568
+E + VKNL + Q L+D F G + ++ G G V F+ A++A
Sbjct: 188 MEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+ M+ + G+++ V
Sbjct: 248 VVNMNGREVSGRLLYV 263
Score = 61 (26.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY ST G++ +++ D+ G RG V F++ + + A++ M+
Sbjct: 108 DSIDNKA-LYDT--FSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 59 (25.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL +I ++LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 133 (51.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD VD K L E F G + + ++A D G+SRG+G V+FD A +I
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 219 MLNNQNLFERRITV 232
LN + L +++I V
Sbjct: 193 KLNGKVLNDKQIFV 206
Score = 113 (44.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 30/121 (24%), Positives = 61/121 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL + +L+ F G + + + D DGKSR FG V F++P +A +++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 222 NQNLFERRITV-RMDRVADR-LDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQK 279
+ ++ V + + ++R L+ R +G G ++++ + + EK+++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 280 L 280
L
Sbjct: 347 L 347
Score = 77 (32.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
V VKNL T EL+ F G I A + GD G V F++ A RA++ ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 574 RTRIDGK 580
+ D K
Sbjct: 287 GKKFDDK 293
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMMDR 574
VKNL T+T ++LR+ F G I ++ KG G V F + A R ++ M+
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNG 390
Query: 575 TRIDGK 580
+ GK
Sbjct: 391 KMVGGK 396
Score = 61 (26.5 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
S G + ++ D G+ RG V+F + D + A+ K++
Sbjct: 155 SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 128 (50.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+ KL+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
++ + D++GKSRGFG V F+ +A +++ +N + + + I V R + +R
Sbjct: 218 MSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 111 (44.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ +D G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 78 (32.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G+ + ++ D+ GK RG V F+ + ++AV++M+ E G+ + + A
Sbjct: 212 SKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA 266
Score = 72 (30.4 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 515 ERDTVVVKNLPPTITWQELRD---KFRNCGDIK-FAEIKGKG-DIGLVRFDSEWTAKRAI 569
E V +KN + +L+D K+ N I+ + GK G V F+ A+RA+
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAV 248
Query: 570 DMMDRTRIDGKIIDV 584
D M+ ++GK+I V
Sbjct: 249 DEMNGKEMNGKLIYV 263
Score = 65 (27.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+A++ M+ KGR + I + D + D+ + + L + S FGN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Score = 61 (26.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
VKNL I + LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 113 (44.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV N+ +D++KL+E+F G E+V++ D GKS+GFG V ++ A +++ L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 222 NQNLFERRITV-RMDRVADRL 241
+++ + + V R + +RL
Sbjct: 261 GKSIDGKVLYVGRAQKKIERL 281
Score = 97 (39.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD ++++KL+E F G + ++ ++ G+ +GFG V F EA +++ +N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMN 362
Query: 222 NQNLFERRITVRMDRVADR 240
+ + + + V + + R
Sbjct: 363 GRIVGSKPLHVTLGQARRR 381
Score = 96 (38.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D + L +F G + + ++ D +G S+G+ V FD A ++I
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 163
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 87 (35.7 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL TI ++L+++F + G I A++ +GKG G+V F S A +A+D M+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG-FGVVCFSSFEEATKAVDEMN 362
Query: 574 RTRIDGKIIDVT 585
+ K + VT
Sbjct: 363 GRIVGSKPLHVT 374
Score = 75 (31.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISML 220
++V +LD V E L + FR AG + I D +S G+G V F P +A +++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 221 NNQNLFERRITVRMDRVADRL 241
N + + + + DRL
Sbjct: 80 NFDLINGKPFRLMWSQPDDRL 100
Score = 70 (29.7 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGD------IKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
V VKN+ I ++L++ F G I+ A K KG G VR+++ A++A+ +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG-FGFVRYETHEAAQKAVLDL 259
Query: 573 DRTRIDGKIIDV 584
IDGK++ V
Sbjct: 260 HGKSIDGKVLYV 271
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D +GK +G V +++ + +KAV +H G+ L + A
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 41 (19.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH 93
G + + I D T P G V F+ P A+N M+
Sbjct: 42 GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 91 (37.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 517 DTVVVKN-LPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRF 559
D + +N LPP+ +WQ+L+D R GD+ +A+++ G +G+V +
Sbjct: 55 DAIYGRNGLPPSGSWQDLKDHMREAGDVCYADVQKDG-VGMVEY 97
Score = 68 (29.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 3 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAI 57
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 118 (46.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 578 DGKII 582
+G+ I
Sbjct: 166 NGRKI 170
Score = 87 (35.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y+ E+ + F+ GK+ V++ G+G VEFD +A ++ L
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL-------KNGYGFVEFDDLRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N ++L R+ V R R DG
Sbjct: 56 NGKDLCGERVIVEHAR-GPRRDG 77
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 118 (46.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 578 DGKII 582
+G+ I
Sbjct: 166 NGRKI 170
Score = 87 (35.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y+ E+ + F+ GK+ V++ G+G VEFD +A ++ L
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL-------KNGYGFVEFDDLRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N ++L R+ V R R DG
Sbjct: 56 NGKDLCGERVIVEHAR-GPRRDG 77
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 118 (46.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 578 DGKII 582
+G+ I
Sbjct: 166 NGRKI 170
Score = 87 (35.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y+ E+ + F+ GK+ V++ G+G VEFD +A ++ L
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL-------KNGYGFVEFDDLRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N ++L R+ V R R DG
Sbjct: 56 NGKDLCGERVIVEHAR-GPRRDG 77
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 132 (51.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 26/82 (31%), Positives = 50/82 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D E+ ++F GK+ ++ + D+DGKS+GFG V F+ AV+++ LN
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 222 NQNLFERRITV-RMDRVADRLD 242
++ + ++I V R + +RL+
Sbjct: 295 DKEINGQKIYVGRAQKKRERLE 316
Score = 129 (50.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD +D +KL E F+ G + + ++ +D+ GKS+GFG V F P EA ++I+ +N
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 222 NQNLFERRITVRMDRVAD 239
+ + + + V + + D
Sbjct: 398 TRMINGKPLYVALAQRKD 415
Score = 103 (41.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F GK+ + ++A D+ G+S+ FG V ++ A +I +N
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 202 GMLLNDREVFV 212
Score = 77 (32.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL + S ++ S G +T + + D GK +G V F+ + KAV +++ E
Sbjct: 240 IDLNYSEESFEKL--FSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 97 TKGRKLVIKEA 107
G+K+ + A
Sbjct: 298 INGQKIYVGRA 308
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
VKNL TI ++L ++F+ G I A++ K KG G V F + A +AI M+
Sbjct: 340 VKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG-FGFVCFTTPEEATKAITEMNT 398
Query: 575 TRIDGK 580
I+GK
Sbjct: 399 RMINGK 404
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 118 (46.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 578 DGKII 582
+G+ I
Sbjct: 166 NGRKI 170
Score = 87 (35.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y+ E+ + F+ GK+ V++ G+G VEFD +A ++ L
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL-------KNGYGFVEFDDLRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N ++L R+ V R R DG
Sbjct: 56 NGKDLCGERVIVEHAR-GPRRDG 77
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 118 (46.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 578 DGKII 582
+G+ I
Sbjct: 166 NGRKI 170
Score = 87 (35.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y+ E+ + F+ GK+ V++ G+G VEFD +A ++ L
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDL-------KNGYGFVEFDDLRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N ++L R+ V R R DG
Sbjct: 56 NGKDLCGERVIVEHAR-GPRRDG 77
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRMDRV 237
L+ R I ++ V
Sbjct: 72 GIKLYGRPIKIQFRSV 87
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 129 (50.5 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + G V++ N +D+ +LRE+F GK
Sbjct: 158 MNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
+V++ +D G+S+GFG V F+ EA ++++ +N + + R + V R RL+
Sbjct: 218 LSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV--GRAQKRLE 271
Score = 114 (45.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G SRG G V F+ A ++I
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQ 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 103 (41.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 75 (31.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D TG+ +G V F+ + +KAV M+ E GR + + A
Sbjct: 212 SRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA 266
Score = 61 (26.5 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 28 GAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KGR + I + D
Sbjct: 65 AERALDTMN-FEVIKGRPVRIMWSQRD 90
Score = 59 (25.8 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY S G++ +++ D+ G RG V F++ + +A+ M+
Sbjct: 108 DSIDNKA-LYDT--FSAFGNILSCKVVCDENGS-RGHGFVHFETQEAATRAIQTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 57 (25.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
Score = 55 (24.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKR 567
+E V +KN + LR+ F G ++ + KG G V F+ A++
Sbjct: 188 MEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKG-FGFVNFEKHEEAQK 246
Query: 568 AIDMMDRTRIDGKIIDV 584
A+ M+ I+G+++ V
Sbjct: 247 AVADMNGKEINGRMVYV 263
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 120 (47.3 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F GK+ + ++A+D+ G ++G+G V FD A +I +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 230 GMLLNDKKVYV 240
Score = 115 (45.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +VD+++L+ F G + + +I D+ GKS+GFG V + P EA ++++ +N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 222 NQNLFERRITVRM 234
+ L + + V +
Sbjct: 426 QRMLAGKPLYVAL 438
Score = 93 (37.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G++T + ++ D KPRG V + + + +KAV++++ E KG+KL + A
Sbjct: 285 GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Score = 74 (31.1 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI-KFAEIKGKGD----IGLVRFDSEWTAKRAIDMMD 573
V +KNL IT QE D F G+I + +K + D G V + + A++A+D ++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 574 RTRIDGK 580
GK
Sbjct: 323 DKEYKGK 329
Score = 55 (24.4 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
+KNL + + L+ +F G I A+I K KG G V + + A +A+ M++
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVTEMNQ 426
Query: 575 TRIDGK 580
+ GK
Sbjct: 427 RMLAGK 432
Score = 53 (23.7 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+A L+++ +++G V + + D T + G A V F + + KA+++++ KGR
Sbjct: 93 EAMLFEL--FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 114 (45.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L++ DE+ L + F G + V + D++ +SRGFG + F +P A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 220 LNNQNLFERRITV 232
+N ++L R+I V
Sbjct: 67 MNGESLDGRQIRV 79
Score = 43 (20.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 459 YSRNASNM-YGNSRYGS--GG 476
YSR + YGN RY S GG
Sbjct: 101 YSRGGGDQGYGNGRYDSRPGG 121
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 128 (50.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 29/115 (25%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+E+F G
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 208
Score = 113 (44.8 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 92
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 93 KMNGMLLNDRKVFV 106
Score = 107 (42.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 290
Query: 222 NQ 223
+
Sbjct: 291 GR 292
Score = 80 (33.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 202
Score = 61 (26.5 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 56 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
Score = 61 (26.5 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V F+ A++A
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 183
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 184 VDEMNGKELNGKQIYV 199
Score = 56 (24.8 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 234 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 288
Query: 577 IDGKII 582
++G+I+
Sbjct: 289 MNGRIV 294
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 124 (48.7 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V NL VDE+ L+++F GK+
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKM 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D G SRGFG V F EA +++ +N + + R + V R + +R
Sbjct: 218 LSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELK 277
Query: 246 RLPEGLK 252
R E LK
Sbjct: 278 RRFEQLK 284
Score = 114 (45.2 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ D G SRGFG V F+ A Q+I+
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAIT 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 109 (43.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQNLFERRITVRM 234
+ L + + V +
Sbjct: 355 GRILGTKPLYVAL 367
Score = 87 (35.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G + V+++ DD+G RG V FQ + +KAV M+ E GR L + A
Sbjct: 212 SRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA 266
Score = 65 (27.9 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY ST G++ +++ DD G RG V F++ + ++A+ M+
Sbjct: 108 DSIDNKA-LYDT--FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQQAITTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 62 (26.9 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 28 GAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFET-KGRKLVIKEAVED 110
+A++ M+ FE KG+ + I + D
Sbjct: 65 AERALDTMN-FEVIKGQPIRIMWSQRD 90
Score = 58 (25.5 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL +I ++LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIL 358
Score = 57 (25.1 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSEWTAKRA 568
+E + VKNL + Q L+D F G + ++ G G V F A++A
Sbjct: 188 MEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+ M+ + G+++ V
Sbjct: 248 VMDMNGKEVSGRLLYV 263
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 115 (45.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 84 (34.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +EI L G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRL--LEIDL-----KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N++ L R+ V R GP R +G S G G G
Sbjct: 56 NSKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 115 (45.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 84 (34.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +EI L G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRL--LEIDL-----KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N++ L R+ V R GP R +G S G G G
Sbjct: 56 NSKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 123 (48.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD VD++KL E F G + + ++ ++GKS+GFG V F P EA ++I+ N
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 222 NQ 223
Q
Sbjct: 384 QQ 385
Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 47/173 (27%), Positives = 73/173 (42%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F + G + + +IA D++GKS+GFG V F+ A ++I LN
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLS 281
L + I V D + E K+ L + + QE K
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQL---EETKAHYTNLYVKNIN-SETTDEQFQELFAKFG 243
Query: 282 LIISNRNTKEV---LERWDFKLQYDKSSDENDAASVNTASKTDSTNAEKDKIG 331
I+S K+ L+ + F + Y+K DA A N EK +G
Sbjct: 244 PIVSASLEKDADGKLKGFGF-VNYEK---HEDAVKAVEALNDSELNGEKLYVG 292
Score = 69 (29.3 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S GD+ +I D+ GK +G V F+ ++A++ ++ G+++ +
Sbjct: 147 SVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Score = 68 (29.0 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+A LY I S +G V+ + + D K G A V F + RKA+ +++ KGR
Sbjct: 51 EAHLYDI--FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGR 107
Score = 57 (25.1 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
VKNL ++ ++L ++F G I A++ K KG G V F + A +AI ++
Sbjct: 326 VKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKG-FGFVCFSTPEEATKAITEKNQ 384
Query: 575 TRIDGK 580
+ GK
Sbjct: 385 QIVAGK 390
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 159 (61.0 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 43/171 (25%), Positives = 88/171 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKX 112
S G V+++ D++GK +G V F+ + RKAV++M+ + G+++ + A + K
Sbjct: 212 SRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRA-QKK- 269
Query: 113 XXXXXXXXXXVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
V+R L++ + Q + + C +N ++V NLD +D
Sbjct: 270 ----------VERQTE--LKHKFGQMKQDKPKIEQVPQDRSVRCQGVN-LYVKNLDDGID 316
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 317 DERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 366
Score = 124 (48.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 26/90 (28%), Positives = 52/90 (57%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
LG V++ NL +D+++L+++F G +V++ D+ GKS+GFG V F+
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 EAVQSISMLNNQNLFERRITV-RMDRVADR 240
+A +++ +N ++L ++I V R + +R
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKKVER 272
Score = 122 (48.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD +D K L + F G + + ++ D++G S+G+G V F+ EA ++I
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIE 156
Query: 219 MLNNQNLFERRITV-----RMDRVAD 239
+N L +R++ V R DR A+
Sbjct: 157 KMNGMFLNDRKVFVGRFKSRRDRQAE 182
Score = 68 (29.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KNL + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG-FGFVSFERHEDARKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKDLNGKQIYV 263
Score = 59 (25.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 308 VKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAV-----TE 362
Query: 577 IDGKII 582
++G+I+
Sbjct: 363 MNGRIV 368
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 129 (50.5 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 33/127 (25%), Positives = 66/127 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V NL +DE+ L+++F GK
Sbjct: 158 MNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
++V++ D +G+SRGFG + F+ EA +++ +N + + + + V R + A+R +
Sbjct: 218 QSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELK 277
Query: 246 RLPEGLK 252
R E +K
Sbjct: 278 RRFEQMK 284
Score = 105 (42.0 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+
Sbjct: 98 MGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAIN 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 101 (40.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +++ +L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 76 (31.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D G+ RG + F+ + +KAV+ M+ E G+ L + A
Sbjct: 212 SQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 66 (28.3 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSEWTAKRAIDMMD 573
+ VKNL + Q L+D F G + ++ G+ G + F+ A++A+D M+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 574 RTRIDGKIIDV 584
+ G+++ V
Sbjct: 253 GKEVSGQLLYV 263
Score = 64 (27.6 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
ST G + +++ ++ G RG V F++ + +KA+N M+ RK+ +
Sbjct: 120 STFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
Score = 62 (26.9 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGR 100
+A LY++ S +G + + + D T + G A + FQ P +A++ M+ FE KG+
Sbjct: 24 EAMLYEM--FSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN-FEMIKGQ 80
Query: 101 KLVI 104
+ I
Sbjct: 81 PIRI 84
Score = 52 (23.4 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMDRT 575
VKNL +I L++ F G I A++ KG G V F S A +A+ T
Sbjct: 298 VKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 126 (49.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 29/115 (25%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 71 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 130
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D +GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 131 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 185
Score = 56 (24.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 43 VVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 83
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 83 (34.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 31/102 (30%), Positives = 47/102 (46%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +EI L G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRL--LEIDL-----KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G S G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 83 (34.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ V++ G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDL-------KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G S G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 83 (34.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 31/102 (30%), Positives = 47/102 (46%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +EI L G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRL--LEIDL-----KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G S G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 83 (34.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 31/102 (30%), Positives = 47/102 (46%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +EI L G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRL--LEIDL-----KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G S G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 128 (50.1 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 29/115 (25%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+E+F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 61 (26.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 61 (26.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 56 (24.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 128 (50.1 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 29/115 (25%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+E+F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 61 (26.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 61 (26.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 56 (24.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 123 (48.4 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 28/117 (23%), Positives = 59/117 (50%)
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
+ ++ +L N F + + LG V++ N +D+++L+++F G
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 110 (43.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/66 (31%), Positives = 44/66 (66%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
++N ++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA +++
Sbjct: 293 VVN-LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAV 350
Query: 218 SMLNNQ 223
+ +N +
Sbjct: 351 TEMNGR 356
Score = 80 (33.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68 (29.0 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + +LY +S G++ ++ D+ G +G V F++ + +A+ KM+
Sbjct: 106 LDKSINNKALYDT--VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGML 162
Query: 97 TKGRKLVI 104
GRK+ +
Sbjct: 163 LNGRKVFV 170
Score = 54 (24.1 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 110 (43.8 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV N +D+ KL+E+F G E+V++ D GKS+GFG V ++ A +++ L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 222 NQNLFERRITV-RMDRVADRL 241
+++ + + V R + +RL
Sbjct: 261 GKSIDGKVLYVGRAQKKIERL 281
Score = 101 (40.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KL+E F G + ++ ++ G+ +GFG + F EA +++ +N
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMN 362
Query: 222 NQNLFERRITVRMDRVADR 240
+ + + + V + + R
Sbjct: 363 GRIVGSKPLQVTLGQARRR 381
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I +F+ NLD +D + L +F G + + ++ D +G S+G+ V FD A ++I
Sbjct: 105 IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 163
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 86 (35.3 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL TI ++L+++F + G I A++ +GKG G++ F S A +A+D M+
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKG-FGVICFSSFEEATKAVDEMN 362
Query: 574 RTRIDGKIIDVT 585
+ K + VT
Sbjct: 363 GRIVGSKPLQVT 374
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISML 220
++V +LD V E L + FR AG + I D +S G+G V F P +A +++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 221 NNQNLFERRITVRMDRVADRL 241
N + + + + DRL
Sbjct: 80 NFDLINGKPFRLMWSQPDDRL 100
Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D +GK +G V +++ + +KAV +H G+ L + A
Sbjct: 220 SEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 64 (27.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V VKN + +L++ F G + ++ K KG G VR+++ A++A+ +
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG-FGFVRYETHEAAQKAVLDL 259
Query: 573 DRTRIDGKIIDV 584
IDGK++ V
Sbjct: 260 HGKSIDGKVLYV 271
Score = 41 (19.5 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH 93
G + + I D T P G V F+ P A+N M+
Sbjct: 42 GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 123 (48.4 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 28/117 (23%), Positives = 59/117 (50%)
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
+ ++ +L N F + + LG V++ N +D+++L+++F G
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 97 (39.2 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
++N ++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA
Sbjct: 293 VVN-LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEA 346
Score = 96 (38.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD ++ K L + G + + + D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIK 156
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 157 KMNGMLLNGRKVFV 170
Score = 80 (33.2 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68 (29.0 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + +LY +S G++ ++ D+ G +G V F++ + +A+ KM+
Sbjct: 106 LDKSINNKALYDT--VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGML 162
Query: 97 TKGRKLVI 104
GRK+ +
Sbjct: 163 LNGRKVFV 170
Score = 65 (27.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 42 (19.8 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDS 561
VKNL I + LR F G I A++ +G G V F S
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS 342
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 133 (51.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D+DG + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 115 (45.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S KRA+D +D T I
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 578 DGKII 582
+G+ I
Sbjct: 172 NGRNI 176
Score = 82 (33.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F G++ +++ G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDL-------KNGYGFVEFEDSRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G S G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY-SYGSRSGGGG 90
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 136 (52.9 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 45/125 (36%), Positives = 64/125 (51%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
S L+S I C +K+FV + Y DE LRE F G+V + +I +D++ G+SRGF
Sbjct: 21 SSSMLQS--IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFA 78
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN-- 261
V F EA ++ L+ Q+L RRI R++ +R G G G G GA+
Sbjct: 79 FVTFTSTEEASNAMQ-LDGQDLHGRRI--RVNYATERGSGFGG--RGFGGPGGGYGASDG 133
Query: 262 --GAP 264
GAP
Sbjct: 134 GYGAP 138
Score = 55 (24.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
GN+ YS + Y N+S YG + G GGN
Sbjct: 151 GNSSYSGNAGGGGGYGGNSS--YGGNAGGYGGN 181
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 454 APSTDYSRNASNMYGNSRY-GSGG 476
AP+ Y A GNS Y G+ G
Sbjct: 137 APAGGYGGGAGGYGGNSSYSGNAG 160
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 437 SQTSSLSSG--NNVYSNQSAPS-TDYSRNASNMYGNSRYGSGGNE 478
+Q SS ++G + SNQ + TD+ + S + G+ ++G N+
Sbjct: 218 AQGSSTNAGFDDKFESNQPLGNDTDH-QTESGLGGDEQFGGSDNQ 261
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 112 (44.5 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISML 220
VFV +L +VD +KLRE F+ G V + ++ D + KS+G+G V + EA ++I +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 221 NNQNLFERRI 230
N Q L R I
Sbjct: 197 NGQWLGRRTI 206
Score = 72 (30.4 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 509 NQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRA 568
NQ+S + +V V N+ ++T E+R F + G I I V+FD++ A +A
Sbjct: 234 NQTSG-DNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 291
Query: 569 IDMMDRTRIDGKII 582
I M+ + G+++
Sbjct: 292 IVQMNNQDVGGQLV 305
Score = 53 (23.7 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
+G VT +++ D + P A VEF +A+ M++ R++ + AVE
Sbjct: 69 IGSVTKTKVIFDGSNDPY--AFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVE 121
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G T G+ Y ++ S S+ S G YG G
Sbjct: 308 SWGKTGDTGKTPGGSYGYGYGNSSSGGNSQPYSGYGGGGAYGGG 351
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 132 (51.5 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 44/137 (32%), Positives = 66/137 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
L LL+ N S GN S L SL + + K+F+ L + D+ LR+ F G V
Sbjct: 7 LGGLLRQNISSNGNVPVTS--MLGSLRL---MSTKLFIGGLSWGTDDASLRDAFAHFGDV 61
Query: 187 ENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPV 245
+ ++ +D++ G+SRGFG V F+ A +IS ++ + L R I R++ DR P
Sbjct: 62 VDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI--RVNPANDRPSAPR 119
Query: 246 RLPEGLKSIGMGLGANG 262
G G G G G
Sbjct: 120 AYGGGGGYSGGGGGYGG 136
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 125 (49.1 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 113 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 227
Score = 113 (44.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 53 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 111
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 112 KMNGMLLNDRKVFV 125
Score = 107 (42.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 309
Query: 222 NQ 223
+
Sbjct: 310 GR 311
Score = 80 (33.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 221
Score = 65 (27.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 202
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 203 VDEMNGKELNGKQIYV 218
Score = 61 (26.5 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 75 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 125
Score = 56 (24.8 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 253 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 307
Query: 577 IDGKII 582
++G+I+
Sbjct: 308 MNGRIV 313
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 133 (51.9 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 36/129 (27%), Positives = 64/129 (49%)
Query: 127 LSALLQNNSSKF-GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185
++ +L N+ F G+ + LE G V++ N +D+K+LRE+F G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGN 216
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPV 245
+V++ +D G+SRGFG V + + EA +++S +N + + R I V R R++
Sbjct: 217 TLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV--GRAQKRIERQS 274
Query: 246 RLPEGLKSI 254
L + I
Sbjct: 275 ELKRKFEQI 283
Score = 113 (44.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQ 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 100 (40.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 86 (35.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DD+G+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 YVGRA 266
Score = 55 (24.4 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170
Score = 54 (24.1 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 131 (51.2 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 127 LSALLQNNSSKF-GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185
++ +L N+ F G+ + LE G V++ N +D+K+LRE+F G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGN 216
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+V++ +D G+SRGFG V + + EA +++S +N + + R I V
Sbjct: 217 TLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 114 (45.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQ 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 101 (40.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DDTG+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 YVGRA 266
Score = 56 (24.8 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
Score = 55 (24.4 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 133 (51.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ LRE+F GK
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 206
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 207 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 257
Score = 120 (47.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 283
Query: 222 NQ 223
+
Sbjct: 284 GR 285
Score = 107 (42.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 27 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIE 85
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 86 KMNGMLLNDRKVFV 99
Score = 73 (30.8 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D +L ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 133 DENLREL--FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
Query: 103 VIKEA 107
+ A
Sbjct: 191 FVGRA 195
Score = 68 (29.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 49 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 99
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 227 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 280
Query: 576 RIDGKII 582
++G+I+
Sbjct: 281 EMNGRIV 287
Score = 60 (26.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKGD-IGLVRFDSEWTAKRAI 569
E V +KN + + LR+ F G +K + GK G V ++ A +A+
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 177
Query: 570 DMMDRTRIDGKIIDV 584
+ M+ + GK I V
Sbjct: 178 EEMNGKEMSGKSIFV 192
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 109 (43.4 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT 575
V+V LPPT +WQ+L+D R GD+ FA+++ G+ G+V F + A+ +D T
Sbjct: 112 VIVTGLPPTGSWQDLKDHMREAGDVCFADVQRDGE-GVVEFLRREDMEYALRRLDST 167
Score = 81 (33.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISM 219
+++V NL V E+ + ++F GK+ ++E+ K+ +S F V F+ P +A ++
Sbjct: 5 RIYVGNLPMDVQERDIEDLFFKYGKIRDIEL---KNNRSTIPFAFVRFEDPRDAEDAVFG 61
Query: 220 LNNQNLFERRITVRMDRVA-DRLDGP 244
N + ++ V R + + GP
Sbjct: 62 RNGYGFGDCKLRVEYPRSSGSKFSGP 87
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 131 (51.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSIS 218
+K++V NL+Y+V + L F G V++ ++ +D+ G+SRGFG VE EA +I+
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 219 MLNNQNLFERRITVRMDRVADRLDG 243
LN + + R + V R +R G
Sbjct: 63 GLNGKEMDGRNLMVNEARPPERRGG 87
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 125 (49.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 125 (49.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 125 (49.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 125 (49.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 125 (49.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 133 (51.9 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ LRE+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 73 (30.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D +L ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DENLREL--FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 68 (29.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 62 (26.9 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Score = 60 (26.2 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKGD-IGLVRFDSEWTAKRAI 569
E V +KN + + LR+ F G +K + GK G V ++ A +A+
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
Query: 570 DMMDRTRIDGKIIDV 584
+ M+ + GK I V
Sbjct: 249 EEMNGKEMSGKSIFV 263
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 125 (49.1 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 107 (42.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 80 (33.2 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 133 (51.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ LRE+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 73 (30.8 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D +L ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DENLREL--FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 68 (29.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 62 (26.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Score = 60 (26.2 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKGD-IGLVRFDSEWTAKRAI 569
E V +KN + + LR+ F G +K + GK G V ++ A +A+
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAV 248
Query: 570 DMMDRTRIDGKIIDV 584
+ M+ + GK I V
Sbjct: 249 EEMNGKEMSGKSIFV 263
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 124 (48.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
+D+ ++ +L N+ F + + LG V++ N +D+++L+E F
Sbjct: 155 IDK-MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQ 213
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
G +V++ D GKSRGFG V F+ +A +++ +N ++L + I V R + +R
Sbjct: 214 YGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAID 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 108 (43.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 76 (31.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ DD GK RG V F+ + +KAV+ M+ + G+ + + A
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
Score = 60 (26.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 25/103 (24%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Score = 58 (25.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKG-DIGLVRFDSEWTAKRAI 569
E V +KN + + L++ F G +K + GK G V F+ A++A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAV 248
Query: 570 DMMDRTRIDGKIIDV 584
D M+ ++GK I V
Sbjct: 249 DDMNGKDLNGKAIFV 263
Score = 57 (25.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 118 (46.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 30 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPA 86
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 87 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 141
Score = 107 (42.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 223
Query: 222 NQ 223
+
Sbjct: 224 GR 225
Score = 80 (33.2 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 84 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 135
Score = 56 (24.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 167 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 221
Query: 577 IDGKII 582
++G+I+
Sbjct: 222 MNGRIV 227
Score = 51 (23.0 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 2 VVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 42
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 123 (48.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 26/115 (22%), Positives = 57/115 (49%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + +G V++ N +D++KL+E+F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
++ + D GKS+GFG V F+ +A +++ +N + + +++ V R + +R
Sbjct: 218 LSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGER 272
Score = 113 (44.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-HPV--EAVQ 215
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ H A++
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 156
Query: 216 SIS--MLNNQNLFERRITVRMDRVAD 239
++ +LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 105 (42.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 78 (32.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G + ++ DD+GK +G V F+ + ++AV++M+ E G+++ + A
Sbjct: 215 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRA 266
Score = 63 (27.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Score = 60 (26.2 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + ++L++ F G + K KG G V F+ A+RA
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG-FGFVSFERHEDAQRA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK + V
Sbjct: 248 VDEMNGKEMNGKQVYV 263
Score = 54 (24.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL + + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 52/188 (27%), Positives = 81/188 (43%)
Query: 48 QISHL-STVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
Q++ L + G+V VE++ D TG+ RG V S V A + + +E GR L +
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Query: 106 EAVEDKXXXXXXXXXXXVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
R + ++ S +G G G N+V+V
Sbjct: 166 AGPPPPKREDGFS------RGPRSSFGSSGSGYGGGGG------SGAGSG----NRVYVG 209
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQN 224
NL + VD+ L +F GKV + D+D G+S+GFG V +D E +I L+ +
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 225 LFERRITV 232
L R+I V
Sbjct: 270 LDGRQIRV 277
Score = 133 (51.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 39/105 (37%), Positives = 48/105 (45%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL + VD +L ++F AG VE VE+ DK G+SRGFG V E +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 220 LNNQNLFERRITVRMDRVAD-RLDGPVRLPEG-LKSIGMGLGANG 262
N L R + V R DG R P S G G G G
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGG 196
Score = 54 (24.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 549 KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVT 585
+ KG G V +DS + AI +D +DG+ I V+
Sbjct: 243 RSKG-FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 126 (49.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 29/107 (27%), Positives = 57/107 (53%)
Query: 127 LSALLQNNSSKF-GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185
++ +L N+ F G+ + LE G V++ N +D+K+L+E+F G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELE-YGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGN 216
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+V++ +D G+SRGFG V + + EA ++++ +N + + R + V
Sbjct: 217 TLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Score = 101 (40.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 79 (32.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ D++G+ RG V + + + +KAV +M+ E GR +
Sbjct: 204 DKRLKEI--FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 YVGRA 266
Score = 62 (26.9 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
D I A LY S GD+ +++ D+ G RG V F++ + +A+ M+
Sbjct: 108 DSIDNKA-LYDT--FSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQTMNGMLL 163
Query: 98 KGRKLVI 104
RK+ +
Sbjct: 164 NDRKVFV 170
Score = 51 (23.0 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I LR +F G I ++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 131 (51.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 44/172 (25%), Positives = 84/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D +GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 179
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 180 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 230
Score = 120 (47.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 256
Query: 222 NQ 223
+
Sbjct: 257 GR 258
Score = 106 (42.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 40/153 (26%), Positives = 71/153 (46%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I +N
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 61
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN-GAPLQDVA-NWLLQEKVQK 279
L +R++ V R R + L K N G + D + L + +
Sbjct: 62 GMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 280 LSL-IISNRNTKEVLERWDFKLQYDKSSDENDA 311
LS+ ++ + N K + + F + Y+K D N A
Sbjct: 120 LSVKVMRDPNGKS--KGFGF-VSYEKHEDANKA 149
Score = 74 (31.1 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 106 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 163
Query: 103 VIKEA 107
+ A
Sbjct: 164 FVGRA 168
Score = 66 (28.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 22 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 72
Score = 64 (27.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 200 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 253
Query: 576 RIDGKII 582
++G+I+
Sbjct: 254 EMNGRIV 260
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 114 (45.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD +D K L + F + G + + ++A D+ GKS+ +G V ++ A ++I +N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 222 NQNLFERRITV 232
L + + V
Sbjct: 166 GVQLGSKNVYV 176
Score = 79 (32.9 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
++V +L+ V E L E+F G V ++ + D KS G+ V + + +A +++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 221 NNQNL 225
N N+
Sbjct: 78 NYTNI 82
Score = 72 (30.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 39/162 (24%), Positives = 63/162 (38%)
Query: 437 SQTSSLSSGN--NVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXXXXXX 494
S T++ SS N N+ N + + S N +N G+S +G + D
Sbjct: 358 SNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTPNIL 417
Query: 495 XXNPRAGLDSNRSMNQSS----NIERDT------VVVKNLPPTITWQELRDKFRNCGDIK 544
P ++ ++ N+E + +KNL I LR+ F G I
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 545 FAEI------KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580
A++ + KG G V F S+ A +A+ M I+GK
Sbjct: 478 SAKVMRDEKEQSKG-FGFVCFASQEEANKAVTEMHLKIINGK 518
Score = 65 (27.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKG-DIGLVRFDSE 562
+S +++ + + VKN P ++T LR F G+I +K K + +
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADA 241
Query: 563 WTAKRAIDMMDRTRI--DGKIIDVTF 586
+AK A+D ++ +I DG+I D T+
Sbjct: 242 ESAKNAMDNLNGKKITDDGQI-DETY 266
Score = 59 (25.8 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 284 ISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAEK-DK 329
+ N N K++ + YD +E A++ A++T T+A+K DK
Sbjct: 248 MDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
Score = 37 (18.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 305 SSDENDAASVNTASKTDST 323
SS+ N+ A+ A+ TD+T
Sbjct: 309 SSNANNNATATGATTTDTT 327
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 114 (45.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD +D K L + F + G + + ++A D+ GKS+ +G V ++ A ++I +N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 222 NQNLFERRITV 232
L + + V
Sbjct: 166 GVQLGSKNVYV 176
Score = 79 (32.9 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
++V +L+ V E L E+F G V ++ + D KS G+ V + + +A +++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 221 NNQNL 225
N N+
Sbjct: 78 NYTNI 82
Score = 72 (30.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 39/162 (24%), Positives = 63/162 (38%)
Query: 437 SQTSSLSSGN--NVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXXXXXX 494
S T++ SS N N+ N + + S N +N G+S +G + D
Sbjct: 358 SNTTTGSSNNSINLNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKDETAASDCADTPNIL 417
Query: 495 XXNPRAGLDSNRSMNQSS----NIERDT------VVVKNLPPTITWQELRDKFRNCGDIK 544
P ++ ++ N+E + +KNL I LR+ F G I
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 545 FAEI------KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580
A++ + KG G V F S+ A +A+ M I+GK
Sbjct: 478 SAKVMRDEKEQSKG-FGFVCFASQEEANKAVTEMHLKIINGK 518
Score = 65 (27.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKG-DIGLVRFDSE 562
+S +++ + + VKN P ++T LR F G+I +K K + +
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADA 241
Query: 563 WTAKRAIDMMDRTRI--DGKIIDVTF 586
+AK A+D ++ +I DG+I D T+
Sbjct: 242 ESAKNAMDNLNGKKITDDGQI-DETY 266
Score = 59 (25.8 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 284 ISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAEK-DK 329
+ N N K++ + YD +E A++ A++T T+A+K DK
Sbjct: 248 MDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
Score = 37 (18.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 305 SSDENDAASVNTASKTDST 323
SS+ N+ A+ A+ TD+T
Sbjct: 309 SSNANNNATATGATTTDTT 327
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 135 (52.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLPEGLKSIGMGLGANG 262
LN L R +R+ V +RLDG + P+G + + +G A G
Sbjct: 74 LNGFELAGR--PMRVGHVTERLDGGTDITFPDGDQELDLG-SAGG 115
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 120 (47.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 25/90 (27%), Positives = 50/90 (55%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
LG V++ N +D+++L+++F G +V++ D+ GKS+GFG V F+
Sbjct: 16 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 75
Query: 212 EAVQSISMLNNQNLFERRITV-RMDRVADR 240
+A +++ +N + L ++I V R + +R
Sbjct: 76 DAQKAVDEMNGKELNGKQIYVGRAQKKVER 105
Score = 107 (42.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 187
Query: 222 NQ 223
+
Sbjct: 188 GR 189
Score = 80 (33.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 48 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 99
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 131 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 185
Query: 577 IDGKII 582
++G+I+
Sbjct: 186 MNGRIV 191
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 90 (36.7 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 55 VGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+G++ V ++ D D+G +G A V F++ D+ +KA+ ++H E KG+ +
Sbjct: 139 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTI 187
Score = 83 (34.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 521 VKNLPPTITWQELRDKFRNCGDI-KFAEIKGKG---DIGLVRFDSEWTAKRAIDMMDRTR 576
VKN+P + ++L++ F+ G++ K GKG D G V + +A +A+ +R
Sbjct: 296 VKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYE 355
Query: 577 IDGKIIDV 584
++G+ ++V
Sbjct: 356 VNGQPLEV 363
Score = 83 (34.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
++VF+ L V E+ LR++ G++ V + D+D G S+G+ V F A ++I
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 219 MLNNQNLFERRITVRMDRVADRL 241
L+++ + I + +RL
Sbjct: 176 ELHSKEFKGKTIRCSLSETKNRL 198
Score = 64 (27.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 154 INCPLI---NKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDG--KSRGFGTV 205
I C L N++F+ N+ E + R+V G VEN+E+ D ++RGF V
Sbjct: 187 IRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFV 244
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 131 (51.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 44/172 (25%), Positives = 84/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D +GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 109 (43.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 40/156 (25%), Positives = 72/156 (46%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 156
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN-GAPLQDVA-NWLLQEK 276
+N L +R++ V R R + L K N G + D + L +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 277 VQKLSL-IISNRNTKEVLERWDFKLQYDKSSDENDA 311
+ LS+ ++ + N K + + F + Y+K D N A
Sbjct: 215 GKTLSVKVMRDPNGKS--KGFGF-VSYEKHEDANKA 247
Score = 74 (31.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 66 (28.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 130 (50.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 43/172 (25%), Positives = 84/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V F+ +A +++ +N +++ + + V R + +R
Sbjct: 218 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RRFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 106 (42.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 76 (31.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D TGK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 212 SKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 67 (28.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 62 (26.9 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Score = 61 (26.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V F+ A +A
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHEDANKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
++ M+ I+GK++ V
Sbjct: 248 VEEMNGKDINGKMVFV 263
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 117 (46.2 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 27/119 (22%), Positives = 62/119 (52%)
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
+D+ ++ +L N+ F + + LG V++ N +++++L+E+F
Sbjct: 155 IDK-MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGK 213
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
G +V++ D +GKS+GFG V F+ +A +++ +N +++ + + V R + +R
Sbjct: 214 YGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAID 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 106 (42.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 79 (32.9 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ DD GK +G V F+ + +KAV++M+ + G+ + + A
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266
Score = 66 (28.3 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+A++ M+ KGR + I + D + D+ + + L + S FGN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Score = 58 (25.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGK 580
+D M+ ++GK
Sbjct: 248 VDEMNGKDMNGK 259
Score = 55 (24.4 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 298 VKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 111 (44.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S +RA+D +D T I
Sbjct: 116 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMRRALDKLDVTDI 175
Query: 578 DGKII 582
+G+ I
Sbjct: 176 NGRKI 180
Score = 80 (33.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F GK+ ++ D K+ G+G VEF+ +A ++ L
Sbjct: 3 RVYIGKLSYHVREKDIQRFFGGYGKL------METDLKN-GYGFVEFEDTRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R +G G G G G
Sbjct: 56 NGKELCGERVIVEHAR------GPRRDRDGY---GGGYGGFG 88
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 131 (51.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 44/172 (25%), Positives = 84/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D +GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 109 (43.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 40/156 (25%), Positives = 72/156 (46%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 156
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN-GAPLQDVA-NWLLQEK 276
+N L +R++ V R R + L K N G + D + L +
Sbjct: 157 KMNGMLLNDRKVFV--GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 277 VQKLSL-IISNRNTKEVLERWDFKLQYDKSSDENDA 311
+ LS+ ++ + N K + + F + Y+K D N A
Sbjct: 215 GKTLSVKVMRDPNGKS--KGFGF-VSYEKHEDANKA 247
Score = 74 (31.1 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 66 (28.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 143 (55.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 37/109 (33%), Positives = 54/109 (49%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVAN 270
LF R I ++ + V L +G + +P + V N
Sbjct: 72 GIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSPTSTSPSRTVDN 120
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 130 (50.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 44/172 (25%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 76 (31.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 66 (28.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V ++ A +A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDANKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
++ M+ I GK+I V
Sbjct: 248 VEEMNGKEISGKVIFV 263
Score = 62 (26.9 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 130 (50.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 44/172 (25%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 107 (42.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 73 (30.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D +L ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DENLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 66 (28.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V ++ A +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDANKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
++ M+ I GK+I V
Sbjct: 248 VEEMNGKEISGKVIFV 263
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 130 (50.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 44/172 (25%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 278 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Score = 120 (47.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 107 (42.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 72 (30.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D +L ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DENLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Query: 103 VIKEA 107
+ A
Sbjct: 262 FVGRA 266
Score = 66 (28.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 64 (27.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 351
Query: 576 RIDGKII 582
++G+I+
Sbjct: 352 EMNGRIV 358
Score = 63 (27.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V ++ A +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDANKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
++ M+ I GK+I V
Sbjct: 248 VEEMNGKEITGKVIFV 263
Score = 62 (26.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKXXXXXXXXXXXV---DRDL-SALLQNNSSKFGN 140
+ I + D + D+ + + L + S FGN
Sbjct: 82 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 108 (43.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ K + + G++ F S +RA++ +D T I
Sbjct: 116 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMRRALEKLDGTDI 175
Query: 578 DGKII 582
+G+ I
Sbjct: 176 NGRKI 180
Score = 83 (34.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 29/102 (28%), Positives = 45/102 (44%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ L Y V EK ++ F GK+ V++ G+G VEF+ +A ++ L
Sbjct: 3 RVYIGRLSYHVREKDIQRFFSGYGKLLEVDL-------KNGYGFVEFEDTRDADDAVYEL 55
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
N + L R+ V R GP R + G G G G
Sbjct: 56 NGKELCGERVMVEHAR------GPRRDRDSYGGGGGGGGGGG 91
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 113 (44.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+ FV L + D++ L+ F G V + +I D++ G+SRGFG V F Q+I
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDG 243
+N Q+L R ITV + + R DG
Sbjct: 67 MNGQDLDGRNITVN-EAQSRRSDG 89
Score = 49 (22.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGG 476
Y G S G Y ++ Y YG SR GSGG
Sbjct: 112 YGGGGGGYGGGRSGGGGGYGSRDGGGGGYGGGGGG-YGGSRGGSGG 156
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 129 (50.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 157 PLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 80 PEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAD 139
Query: 215 QSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 140 RAMQTLNGRRVHQSEIRV 157
Score = 98 (39.6 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISML 220
+FV +L +V+++ L + F + G V + D K G+SRG+G V F +A +++S +
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
+ + L R I R + + + + + ++GM
Sbjct: 238 DGEWLGSRAI--RCNWANQKGQPSIAQQQAMSAVGM 271
Score = 63 (27.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 498 PRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLV 557
P G+ S + + + T V NL P T ++ F+N G + + + +
Sbjct: 283 PTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFI 342
Query: 558 RFDSEWTAKRAIDMMDRTRIDGK 580
+ DS A +AI ++ ++G+
Sbjct: 343 KMDSHENAAQAICGLNGYNVNGR 365
Score = 48 (22.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 528 ITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAI 569
+ W + R G + F + + + L D EW RAI
Sbjct: 207 VMWDMKTGRSRGYGFVAFRD-RSDAEKALSSMDGEWLGSRAI 247
Score = 48 (22.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 54 TVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
T G V V+I+ D K VE+ P +A+ ++
Sbjct: 107 TTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 144 (55.7 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 39/119 (32%), Positives = 60/119 (50%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
SP ++ I C +K+F+ + Y +DE LRE F G+V + + LD++ G+SRGFG
Sbjct: 27 SPSLFQA--IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
V F A +I L+ ++L R V+++ DR G G G G G +G
Sbjct: 85 FVTFTSSEAASSAIQALDGRDLHGR--VVKVNYANDRTSGGGFGGGGYGGGGGGYGGSG 141
Score = 39 (18.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 456 STDYSRNASNMYGNSRYGSGGN 477
S Y A GNS G GGN
Sbjct: 153 SGGYGGGAGGYGGNSGGGYGGN 174
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 459 YSRNASNMYGNSRYGSGG 476
Y NA+ YG S G+GG
Sbjct: 171 YGGNAAGGYGGS--GAGG 186
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 133 (51.9 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++++V N+ + +DE L+ VF G++E V++ D+ G+SRG+G V+F P +A +++
Sbjct: 273 HRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEK 332
Query: 220 LNNQNLFERRITV 232
+N +L R I V
Sbjct: 333 MNGYDLGGRAIRV 345
Score = 50 (22.7 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 49 ISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAV 89
I+ VG V +I+ D +G+ +G VEF+ V A+
Sbjct: 191 IAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAI 232
Score = 49 (22.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 445 GNNVYSNQSAPSTD-YSRNASNMYGNSRYGSGG 476
GN+ ++ ++ T S N SN G+ GSGG
Sbjct: 348 GNDKFTPENTQRTQSQSANQSNFQGSMFSGSGG 380
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 130 (50.8 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 44/172 (25%), Positives = 83/172 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +VD++ L+E+F GK
Sbjct: 198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKS+GFG V ++ +A +++ +N + + + I V R + +R
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 318 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 368
Score = 120 (47.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 22/62 (35%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 394
Query: 222 NQ 223
+
Sbjct: 395 GR 396
Score = 107 (42.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 138 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 196
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 197 KMNGMLLNDRKVFV 210
Score = 76 (31.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 244 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 301
Query: 103 VIKEA 107
+ A
Sbjct: 302 FVGRA 306
Score = 66 (28.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 160 SAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 210
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 338 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKG-FGFVCFSSPEEATKAV-----T 391
Query: 576 RIDGKII 582
++G+I+
Sbjct: 392 EMNGRIV 398
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L++ F G ++ K KG G V ++ A +A
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDANKA 287
Query: 569 IDMMDRTRIDGKIIDV 584
++ M+ I GK+I V
Sbjct: 288 VEEMNGKEISGKVIFV 303
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 111 (44.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 133 NNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
NN++ N ++ + LE + N VFV +L Y+ +++ L +F GKV + ++
Sbjct: 86 NNNNNNNNNNSVNNKELE---LERDQTN-VFVKHLPYEFNDEDLENLFSKYGKVLSSKVM 141
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
+D G S G+G V F P E+ +I L+ +++ R+ + L+
Sbjct: 142 IDPKGNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLN 191
Score = 100 (40.3 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N +F+ L Y V + +LR++F GK+ ++ LD +G+S+ G V F ++A ++I
Sbjct: 197 NNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDA 256
Query: 220 LN 221
+N
Sbjct: 257 MN 258
Score = 88 (36.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKGDI-GLVR 558
SN N +S + + +K LP +T +LR F G I ++ G+ G VR
Sbjct: 184 SNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVR 243
Query: 559 FDSEWTAKRAIDMMDRTRID 578
F SE A +AID M+ RI+
Sbjct: 244 FSSELDASKAIDAMNGVRIN 263
Score = 58 (25.5 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
S G V +++ D G G V F SP A+ ++ ++ + +KL+ +
Sbjct: 130 SKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCR 182
Score = 51 (23.0 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 22/119 (18%), Positives = 42/119 (35%)
Query: 443 SSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXXXXXXXX----NP 498
++ NN +N + + + + N +N N+ + N + NP
Sbjct: 689 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNLTTTTTTTTTTNTTNLTNLESLNP 748
Query: 499 RAGLDSNRSMNQSSNIE-RDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG 555
+ S+ + N DT + V +LPP + L F G ++ + D G
Sbjct: 749 LSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTG 807
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 115 (45.5 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + +G V++ N +D +KL+ +F GK
Sbjct: 158 MNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKT 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
+V + D+ G+SRGFG V F + +A ++++ +N + L R + V R RL+
Sbjct: 218 LSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV--GRAQKRLE 271
Score = 113 (44.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D++KLR+ F G + + ++ D G SRGFG V F P EA ++++ +N
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMN 354
Query: 222 NQ 223
+
Sbjct: 355 GR 356
Score = 110 (43.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ N+D +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
Score = 70 (29.7 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V ++ D+ G+ RG V F + R+AV +M+ E GR L + A
Sbjct: 215 GKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA 266
Score = 61 (26.5 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 26/103 (25%), Positives = 42/103 (40%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LYQ S G + + + D T + G A + FQ P A++ M+ KGR
Sbjct: 24 EAMLYQ--KFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRP 81
Query: 102 LVIKEAVED---KXXXXXXXXXXXVDRDL-SALLQNNSSKFGN 140
+ I + D + +D + + L + S FGN
Sbjct: 82 IRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGN 124
Score = 59 (25.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL +I ++LR +F G I A++ G G V F S A +A+ T
Sbjct: 298 VKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAV-----TE 352
Query: 577 IDGKII 582
++G+I+
Sbjct: 353 MNGRIV 358
Score = 59 (25.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIK----FAEIKGKG-DIGLVRFDSEWTAKRA 568
+E V +KN I ++L++ F G + +G+ G V F + A+RA
Sbjct: 188 VEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+ M+ ++G+++ V
Sbjct: 248 VTEMNGKELNGRVLYV 263
Score = 57 (25.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
MD + +LY S G++ +++ D+ G +G V F++ + +A+ M+
Sbjct: 106 MDESIDNKALYDT--FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAANRAIETMNGML 162
Query: 97 TKGRKLVI 104
RK+ +
Sbjct: 163 LNDRKVFV 170
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 110 (43.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL ++WQ+L+D R G++ +A+ K + + G+V F S K AI+ +D T +
Sbjct: 122 LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL 181
Query: 578 DGKII 582
+G+ I
Sbjct: 182 NGRRI 186
Score = 79 (32.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V+V L Y V E+ L F+ G+ ++ I G+G VEF+ +A ++
Sbjct: 4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILI-------KNGYGFVEFEDYRDADDAVYE 56
Query: 220 LNNQNLFERRITVRMDR 236
LN + L R+ V R
Sbjct: 57 LNGKELLGERVVVEPAR 73
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 100 (40.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K+FV + ++ DE KLRE F G+V + DK G+ RGFG V F P +V +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP--SVLDRVL 64
Query: 220 LNNQNLFERRITVR--MDRVADRLDG 243
++ R + V+ M R ++ G
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQVSG 90
Score = 92 (37.4 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +++ R+ F + G V +V I D+ + RGFG V FD +AV S+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE-DAVDSVLH 169
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+L +++ V+ D G G +S+G G G+ G
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGG-----GGRSMGGG-GSGG 206
Score = 84 (34.6 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 51 HLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
H + G+V+ ++ D TG+PRG V F P ++ + + + H +T R++ +K A+
Sbjct: 25 HFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDT--REVDVKRAM 81
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 499 RAG-LDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI-------KG 550
R G L+++RS + + + V LPPT+T +E R F G + I +
Sbjct: 91 RTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRP 150
Query: 551 KGDIGLVRFDSEWTAKRAID-MMDRTRID--GKIIDV 584
+G G V FDSE A+D ++ +T D GK ++V
Sbjct: 151 RG-FGFVSFDSE----DAVDSVLHKTFHDLSGKQVEV 182
Score = 54 (24.1 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 454 APSTDYSRNASNMYGNSRYGSG 475
AP + AS+ YGN YGSG
Sbjct: 295 APRNSWDTPASSGYGNPGYGSG 316
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 462 NASNMYGNSRYGSG-GN 477
N YG+S YG+G GN
Sbjct: 234 NGLPSYGSSGYGAGYGN 250
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 449 YSNQSAPSTDYSRNASNMYGN-SRYGSGG 476
YSNQ YS + S YGN + YG G
Sbjct: 337 YSNQGYGYGGYSGSDSG-YGNQAAYGVVG 364
Score = 37 (18.1 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 449 YSNQSAPSTDYSRNASNMYGNSRYGSGG 476
+S P + + Y N YG GG
Sbjct: 319 HSGYGVPGAAPPTQSPSGYSNQGYGYGG 346
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 123 (48.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A+D G+S+G+G V++ + A ++I LN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 186 GMLLNDKQVYV 196
Score = 117 (46.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ ++V NLD + ++KL+E+F G V + ++ D +G S+G G V F P EA +++S
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 220 LNNQNLFERRITVRM-DRVADR 240
L+ + + + + V + R DR
Sbjct: 378 LSGKMIESKPLYVAIAQRKEDR 399
Score = 113 (44.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 36/156 (23%), Positives = 74/156 (47%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
L+ +L N+ + + L Q +S N V+V NL + L+ F GK+
Sbjct: 184 LNGMLLNDKQVYVGPF-LRRQERDSTANKTKFTN-VYVKNLAESTTDDDLKNAFGEYGKI 241
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR-LDGP 244
+ + D +GKS+GFG V F++ +A +++ LN ++ V R + ++R +
Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301
Query: 245 VRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKL 280
VR + LK ++ ++++ + EK++++
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEI 337
Score = 93 (37.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD+ V + +L + F G V V + D +S G+G V F +P +A ++I L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 221 NNQNLFERRITV 232
N L+ + I V
Sbjct: 98 NYIPLYGKPIRV 109
Score = 71 (30.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI------KFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
V VKNL + T +L++ F G I K E K KG G V F++ A RA++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG-FGFVNFENADDAARAVESL 275
Query: 573 DRTRIDGK 580
+ + D K
Sbjct: 276 NGHKFDDK 283
Score = 59 (25.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
S+ G++ ++ D +G+ +G V++ + + +KA+ K++
Sbjct: 145 SSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Score = 57 (25.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEW 563
QSSN+ VKNL P+I+ ++L++ F G + +++ KG G V F +
Sbjct: 316 QSSNL-----YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPE 369
Query: 564 TAKRAIDMMDRTRIDGK 580
A A+ + I+ K
Sbjct: 370 EATEAMSQLSGKMIESK 386
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 127 (49.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 49/168 (29%), Positives = 80/168 (47%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VFV NL V L+++F+ G + + ++A +DGKSRG+G V+F+ A +I
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Query: 219 MLNNQNLFERRITV-RMDRVADRLDGPVRLPEGLKSIGM-GLGANGAPLQDVANWLLQEK 276
LN+ + ++ I V + + DR V+ E ++ M L A DV+ LL+EK
Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDR----VKPEEKYTNLYMKNLDA------DVSEDLLREK 220
Query: 277 VQKLSLIISNRNTKEV--LERWDFKLQYDKSSDENDAASVNTASKTDS 322
+ I+S K+ L R + +D D AA +K S
Sbjct: 221 FAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGS 268
Score = 117 (46.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
++ ++V N++ V E++LR+ F G + + ++ D+ GKS+GFG V F P EA+ ++
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Query: 219 MLNNQ 223
+ Q
Sbjct: 363 TFHGQ 367
Score = 66 (28.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKGD-IGLVRFDSEWTAKRAID 570
+ VKN+ +T +ELR F CG I ++ KGK G V F T + AID
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFS---TPEEAID 359
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 18/96 (18%), Positives = 42/96 (43%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--DKXX 113
G++ ++ + GK RG V+F+ D A+ ++ +++ + + ++ D+
Sbjct: 136 GNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK 195
Query: 114 ---XXXXXXXXXVDRDLSA-LLQNNSSKFGNTYGLS 145
+D D+S LL+ ++FG L+
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Score = 52 (23.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH--RFETK 98
G + + I D+ RG A V F +P+ R+A ++ +F +K
Sbjct: 225 GKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 272 LLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTAS---KTDSTN 324
LL V+KL ++N+ T +LE +L S E+ A V+ A K+ TN
Sbjct: 532 LLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTN 587
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 123 (48.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L + + LRE F G +E + D+D +SRGFG V F EA ++
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 220 LNNQNLFERRITVRMDRVADR 240
+NNQ F+ RI +R+D+ ++R
Sbjct: 63 MNNQE-FDGRI-IRVDKASER 81
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 125 (49.1 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 43/172 (25%), Positives = 82/172 (47%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + +G V++ N +D+++L+E+F GK
Sbjct: 159 MNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLDGPV 245
+V++ D GKSRGFG V ++ +A +++ +N L + + V R + +R
Sbjct: 219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Query: 246 RLPEGLKS--IGMGLGANGAPLQDVANWLLQEKVQK-LSLIISNRNTKEVLE 294
R E LK I G N ++++ + + EK++K S S + K +LE
Sbjct: 279 RKFEQLKQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 329
Score = 116 (45.9 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 21/62 (33%), Positives = 42/62 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D++KLR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 355
Query: 222 NQ 223
+
Sbjct: 356 GR 357
Score = 106 (42.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 99 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 157
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 158 KMNGMLLNDRKVFV 171
Score = 78 (32.5 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D TGK RG V ++ + KAV +M+ E G+ + + A
Sbjct: 216 GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Score = 67 (28.6 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 121 SAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 171
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRT 575
+KNL TI ++LR +F G I A++ + KG G V F S A +A+ T
Sbjct: 299 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKG-FGFVCFSSPEEATKAV-----T 352
Query: 576 RIDGKII 582
++G+I+
Sbjct: 353 EMNGRIV 359
Score = 63 (27.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCG---DIK-FAEIKGKG-DIGLVRFDSEWTAKRAI 569
E V +KN + Q L++ F G +K + GK G V ++ A +A+
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAV 249
Query: 570 DMMDRTRIDGKIIDV 584
+ M+ T ++GK + V
Sbjct: 250 EEMNGTELNGKTVFV 264
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 134 (52.2 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD VD++KL+E+F G V + ++ L+ G SRGFG V + +P EA++++S +N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 222 NQNLFERRITVRM-DRVADR 240
+ + + + + + R DR
Sbjct: 394 GKMIGRKPLYIALAQRKEDR 413
Score = 121 (47.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L E F G + + ++A+D G+S+G+G V+F+ A +I LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 222 NQNLFERRITV 232
+ ++++ V
Sbjct: 198 GMLMNDKQVFV 208
Score = 108 (43.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ ++ +LD KV E L ++F+ V +V + D++ +S G+ + F +P +A +++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 220 LNNQNLFERRITVRMDR--VADRLDG 243
LN LF+R I + + + RL G
Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLSG 134
Score = 105 (42.0 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 39/174 (22%), Positives = 79/174 (45%)
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
+D+ L+ +L N+ F + + P V+V NL ++ E +LR+ F
Sbjct: 193 IDK-LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGK 251
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRL 241
G + + + D+ G SR FG V F+ A ++ +N +L + + V R + ++R
Sbjct: 252 FGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
Query: 242 DGPVRL--PEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVL 293
+ R E + GAN L+++ + + EK++++ N + +V+
Sbjct: 312 EELRRKFEQERINRFEKSQGAN-LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM 364
Score = 70 (29.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 504 SNRSMNQSSNIE-RDTVVVKNLPPTITWQELRDKFRNCGDI---KFA-EIKGKGD-IGLV 557
SNR + S+ + + + +KNL +I + L + F + G I K A ++ G+ G V
Sbjct: 124 SNR--DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFV 181
Query: 558 RFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
+F+ E +A+ AID ++ ++ K + V F
Sbjct: 182 QFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Score = 64 (27.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 506 RSMNQSSNIERDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIKG--KGD---IGLVRF 559
R+ ++++ R T V VKNLP I ELR F G I A + G+ G V F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 560 DSEWTAKRAIDMMDRTRIDGKIIDV 584
+ A A++ M+ + ++ V
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYV 301
Score = 59 (25.8 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
S+ G + ++ D TG+ +G V+F+ + + A++K++
Sbjct: 157 SSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Score = 49 (22.3 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
G ++ ++ D +G R V F+ + AV KM+
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 48 (22.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSE 562
+N+ + + +KNL ++ ++L++ F G++ +++ +G G V + +
Sbjct: 323 INRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 382
Query: 563 WTAKRAIDMMDRTRIDGK 580
A RA+ M+ I K
Sbjct: 383 EEALRALSEMNGKMIGRK 400
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 123 (48.4 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 28/106 (26%), Positives = 54/106 (50%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N ++D+K L +F G+V
Sbjct: 158 MNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+V++ D+ GKS+GFG V F+ +A +++ +N + L + I V
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 112 (44.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q + GI IN ++V NLD +D+++L++ F G + + ++ + + G+S+GFG V
Sbjct: 282 QVTQDRGIRYQGIN-LYVKNLDDGIDDERLQKEFSPFGTITSTKV-MTEGGRSKGFGFVC 339
Query: 207 FDHPVEAVQSISMLNNQ 223
F P EA +++S +N +
Sbjct: 340 FSSPEEATKAVSEMNGR 356
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V V+++ D+ GK +G V F+ + +KAV++M+ E G+ + + A
Sbjct: 215 GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPA 266
Score = 62 (26.9 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 48 (22.0 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMD 573
VKNL I + L+ +F G I ++ +G G V F S A +A+ M+
Sbjct: 298 VKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMN 354
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 115 (45.5 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+N +++ R+I R+D+ D R G + G G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
Score = 37 (18.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 445 GNNVYSNQSAP---STDYSRNASNMYGNSRYGSGGN 477
G N + ++S S DY + S G S SGG+
Sbjct: 124 GGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGS 159
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 121 (47.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 28/105 (26%), Positives = 61/105 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N++ +++ LR+ F G + + ++ +D++G+S+GFG V F+ P EA +++ +N
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMN 404
Query: 222 NQNLFERRITVRM-DRVADR-LDGPVRLPEGLKSIGMGLGANGAP 264
++ + + + V + R DR + + L ++ MG A+G P
Sbjct: 405 SKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVP 449
Score = 118 (46.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F L G + + ++A D +G S+G+G V F+ A +I +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 207 GMLLSDKKVYV 217
Score = 104 (41.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 33/129 (25%), Positives = 62/129 (48%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L ++ + + Q ++ LG + VFV N +D++KL +F G++
Sbjct: 205 VNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEI 264
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERRITV-RMDRVADRLDG 243
+ + D GK +GFG V F A Q++ LN+ L + +++V R + ++R
Sbjct: 265 TSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAE 324
Query: 244 PVRLPEGLK 252
R E LK
Sbjct: 325 LKRKYEALK 333
Score = 73 (30.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
S G++T ++ D GKP+G V F D +AV K++
Sbjct: 259 SKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFET-KGR 100
+A L++ S G V + + D+T + G A V FQ P +A++ M+ FE GR
Sbjct: 70 EAMLFE--KFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN-FEVIHGR 126
Query: 101 KLVIKEAVEDKXXXXXXXXXXXVDRDLSALLQNNS-----SKFGN 140
+ I + D + ++L ++ N S S FGN
Sbjct: 127 PMRIMWSQRDPAARRAGNGNIFI-KNLDRVIDNKSVYDTFSLFGN 170
Score = 64 (27.6 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + + S+Y S G++ ++ DD G +G V F++ + A+ K++
Sbjct: 152 LDRVIDNKSVYDT--FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGML 209
Query: 97 TKGRKLVI 104
+K+ +
Sbjct: 210 LSDKKVYV 217
Score = 53 (23.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
VKN+ + LRD F + G I A++ + KG G V F+ A A+ M+
Sbjct: 347 VKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKG-FGFVCFEKPEEATAAVTDMNS 405
Query: 575 TRIDGK 580
I K
Sbjct: 406 KMIGAK 411
Score = 53 (23.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTA 565
S ++ V VKN + ++L F G+I A + K KG G V F + A
Sbjct: 233 SGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKG-FGFVAFADQDAA 291
Query: 566 KRAIDMMDRTRIDG 579
+A++ ++ + ++G
Sbjct: 292 GQAVEKLNDSILEG 305
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 36/104 (34%), Positives = 47/104 (45%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
N L K+FV NL + + + E+F G V NVEI KDGK+RGF V EA
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQ 149
Query: 215 QSISMLNNQNLFERRITVRMDRVADRLDGPV-RLPEGLKSIGMG 257
+I + + R I+V R R P + P L S G
Sbjct: 150 AAIDKFDTFQVSGRIISVSFAR---RFKKPTPKSPNDLPSPAPG 190
Score = 105 (42.0 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLA--GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+K++V+NL +K LRE+F A V + D +G+S G+G V F EA +I
Sbjct: 194 HKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAI 253
Query: 218 SMLNNQNLFERRITVR 233
+ LN + + R IT++
Sbjct: 254 TKLNGKEIMGRPITLK 269
Score = 80 (33.2 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 45 SLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
S+ IS L G V VEI+ GK RG A V S + + A++K F+ GR +
Sbjct: 107 SVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIIS 166
Query: 104 IKEA 107
+ A
Sbjct: 167 VSFA 170
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 139 (54.0 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
LF R I ++
Sbjct: 72 GIKLFGRPIKIQ 83
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 138 (53.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
LF R I ++
Sbjct: 72 GIKLFGRPIKIQ 83
Score = 39 (18.8 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 429 AAYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGS 474
+ +S +QS S + ++ Q PS R S+ Y R+ S
Sbjct: 168 SGFSPSVQSHNHSFNQSSSSPWRQDTPSQRKVRQNSHPYLADRHYS 213
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 437 SQTSSLSSGNNVYSNQSAPSTD---YSRNASNM 466
SQ SLS + N S ST Y R NM
Sbjct: 92 SQEVSLSYPQHHVGNSSPTSTSPSRYERTVDNM 124
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 124 (48.7 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++A D++G S+G+G V ++ A Q+I +N
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 222 NQNLFERRITV 232
L E+++ V
Sbjct: 211 GMLLNEKKVYV 221
Score = 80 (33.2 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 56 GDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
GDVT + D +TGK RG V F S + KAV +++ E G+ L + A
Sbjct: 266 GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Score = 70 (29.7 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKG-DIGLVRFDSEWTAKRAIDMM 572
+ VKN+ P +T E R F GD+ + + GK G V F S A +A+ +
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 573 DRTRIDGK 580
+ G+
Sbjct: 304 NEKEFHGQ 311
Score = 69 (29.3 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 195 KDGKSRGFGTVEFDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVADRLDGPVRLPE 249
K GKS+GFG V F +P +A ++++ M+NN+ L+ + R D ++L+ ++
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVA-LAQRKDVRKNQLEQSIQARN 486
Query: 250 GLKSIGMGLGANGAPLQ 266
L+ + A G P Q
Sbjct: 487 QLR-MQQAAAAAGMPQQ 502
Score = 65 (27.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALD 194
+++ NLD +VD++KLR++F G + + ++ D
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 42 (19.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI 548
++S + + +KNL + ++LR F G I A++
Sbjct: 339 KASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 114 (45.2 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 32/103 (31%), Positives = 56/103 (54%)
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGF 202
L+P+ E + ++F+ N+ Y+ E+ R +F G +E V IA+D + GKS+GF
Sbjct: 296 LTPE--EQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGF 353
Query: 203 GTVEFDHPVEAVQSISMLNNQNLFERRIT--VRMDRVAD-RLD 242
V+F +A ++ L+ Q +F+ R+ + D+ D RLD
Sbjct: 354 LYVQFLKKEDATRAYRSLDKQ-IFQGRLLHILPADKKKDHRLD 395
Score = 63 (27.2 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 515 ERDT--VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
ERD ++VKN P T E+ + F G +K + G I ++ F +A+ A +
Sbjct: 489 ERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPAGTIAIIEFRDAPSARAAFSKL 548
Query: 573 DRTRIDGKII 582
R I+
Sbjct: 549 AYKRFKSSIL 558
Score = 60 (26.2 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR 94
S GDVT V+++ G+ R A + ++S D +AV ++
Sbjct: 23 SKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNK 64
Score = 55 (24.4 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 499 RAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----- 553
+ G ++ S + S + +++KNLP T ++L + F G +K + K D
Sbjct: 700 KQGTGTSASSIKKSG-KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARG 758
Query: 554 IGLVRFDSEWTAKRAIDMMDRTRIDGK 580
V F+ A+ A+ ++ + G+
Sbjct: 759 FAFVEFNLMKEAETAMSQLEGVHLLGR 785
Score = 53 (23.7 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 502 LDSNRSMNQSSNIERDTVVV--KNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------ 553
L ++ ++ +++ TV V KNL T Q L D F+ A +K K D
Sbjct: 600 LGESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGK 659
Query: 554 -----IGLVRFDSEWTAKRAIDMMDRTRIDG 579
G V F ++ A AI +D +DG
Sbjct: 660 TLSMGFGFVEFRTKEQANVAISTLDGHVLDG 690
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 135 (52.6 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLPEGLKSIGMGLGANG 262
LN L R +R+ V +RLDG + P+G + + +G A G
Sbjct: 99 LNGFELAGR--PMRVGHVTERLDGGTDITFPDGDQELDLG-SAGG 140
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 102 (41.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLDETK 169
Score = 76 (31.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 15 RIYVGNLPSDVREKDLEDLFYKYGRISEIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 73 NGYDYGQCRLRVEFPR 88
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 102 (41.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-VGMVEYLRKEDMEYALRKLDDTK 169
Score = 76 (31.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 73 NGYDYGQCRLRVEFPR 88
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 113 (44.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ ++V NL ++E +LRE+F G++ + ++ ++G+S+GFG V F + E+ Q+
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 220 LNNQNLFERRITVRM-DRVADRL 241
LN + + I VR+ +R DR+
Sbjct: 364 LNGFLVDGKPIVVRVAERKEDRI 386
Score = 93 (37.8 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD + L +F G + + ++ ++++G+S+GFG V+FD AV + S L+
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKV-VEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 222 NQNLFERRITV 232
++ +++ V
Sbjct: 173 GSMVYGKKLFV 183
Score = 77 (32.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
S G V+ V ++ D G+ RG V F +P+ +KA+ + + +KL + +A++
Sbjct: 223 SQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Score = 55 (24.4 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAK 566
N+ + VKNL ++ LR+ F G I A++ + KG G V F + +K
Sbjct: 300 NMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKG-FGFVCFSNCEESK 358
Query: 567 RAIDMMDRTRIDGKIIDV 584
+A ++ +DGK I V
Sbjct: 359 QAKRYLNGFLVDGKPIVV 376
Score = 54 (24.1 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
N TGK A + F SP A+ +++ + KG+ + I + D
Sbjct: 55 NSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRD 100
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 116 (45.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF------DHPVE 212
I VF+ NLD +D K L E F GK+ + ++ D++G S+G+G V + D +E
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIE 155
Query: 213 AVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEG-LKSIG 255
+ +L + LF R R DR A+ + P +K+ G
Sbjct: 156 EMNG-KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFG 198
Score = 107 (42.7 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-HPV--EAVQSIS 218
V++ N +D++ LR VF G+ +V++ D GKS+ FG V FD H AV+ ++
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 219 M--LNNQNLFERRITVRMDRVAD 239
+N Q +F R +++R A+
Sbjct: 252 GRDINGQTIFVGRAQKKVERQAE 274
Score = 105 (42.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 20/74 (27%), Positives = 46/74 (62%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+++ NLD +D++ LR+ F + G + V++ + + G+S+GFG + F P A ++++ +
Sbjct: 294 KLYIKNLDDTIDDETLRKEFSVFGSICRVKV-MQEAGQSKGFGLICFFSPEAAAKAMAEM 352
Query: 221 NNQNLFERRITVRM 234
N + L + + + +
Sbjct: 353 NGRILGSKPLNIAL 366
Score = 69 (29.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/75 (32%), Positives = 34/75 (45%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGD---IK-FAEIKGKGD-IGLVRFDSEWTAKRAI 569
E V +KN + + LR F G +K + GK G V FDS AK A+
Sbjct: 188 EFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAV 247
Query: 570 DMMDRTRIDGKIIDV 584
+ M+ I+G+ I V
Sbjct: 248 EDMNGRDINGQTIFV 262
Score = 64 (27.6 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL + S G V+++ D +GK + V F S + AV M+ + G+ +
Sbjct: 203 DESLRSV--FSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
Query: 103 VIKEA 107
+ A
Sbjct: 261 FVGRA 265
Score = 53 (23.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDI---KFAEIKGKGD-IGLVRFDSEWTAKRAIDMMDRTR 576
+KNL TI + LR +F G I K + G+ GL+ F S A +A+ M+
Sbjct: 297 IKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRI 356
Query: 577 IDGKIIDV 584
+ K +++
Sbjct: 357 LGSKPLNI 364
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQ 83
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 125 (49.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 28/115 (24%), Positives = 59/115 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 113 (44.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 KMNGMLLNDRKVFV 170
Score = 86 (35.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F + ++ + S+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSY-MQRMASVRAVP 353
Query: 222 N 222
N
Sbjct: 354 N 354
Score = 80 (33.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRA 568
E V +KN + + L+D F G ++ K KG G V F+ A++A
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKA 247
Query: 569 IDMMDRTRIDGKIIDV 584
+D M+ ++GK I V
Sbjct: 248 VDEMNGKELNGKQIYV 263
Score = 61 (26.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 43 (20.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKG 552
VKNL I + LR +F G I A++ +G
Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
LF R I ++
Sbjct: 72 GIKLFGRPIKIQ 83
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
LF R I ++
Sbjct: 72 GIKLFGRPIKIQ 83
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 124 (48.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 25/80 (31%), Positives = 49/80 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD VD+ L++ F G + + ++ D++G+S+GFG V F+ P EA +++ +N
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 222 NQNLFERRITVRM-DRVADR 240
++ + + + V + R DR
Sbjct: 379 SKMVCSKPLYVAIAQRKEDR 398
Score = 122 (48.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F L G + + ++A+D+DG S+G+G V F+ A +I +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 182 GMLLAGKKVFV 192
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
LG V+V N +++ L ++F G + + E+ + +GKS+GFG V F +P
Sbjct: 205 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPE 263
Query: 212 EAVQSISMLNNQNL 225
EA ++ L++ +
Sbjct: 264 EAETAVQALHDSTI 277
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + + S+Y S G++ ++ D+ G +G V F++ + + A+ K++
Sbjct: 127 LDKVIDNKSIYDT--FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGML 184
Query: 97 TKGRKLVI 104
G+K+ +
Sbjct: 185 LAGKKVFV 192
Score = 57 (25.1 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 53 STVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVED 110
S G V + + D+ T G A V FQ P +A++ M+ FE G+ + I + D
Sbjct: 53 SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN-FEALHGKPMRIMWSQRD 111
Query: 111 KXXXXXXXXXXXVDRDLSALLQNNS-----SKFGN 140
+ ++L ++ N S S FGN
Sbjct: 112 PAMRRSGAGNIFI-KNLDKVIDNKSIYDTFSLFGN 145
Score = 54 (24.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
VKNL T+ L+ +F + G+I A++ + KG G V F+ A A+ M+
Sbjct: 321 VKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKG-FGFVCFEKPEEATSAVTEMNS 379
Query: 575 TRIDGK 580
+ K
Sbjct: 380 KMVCSK 385
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 136 (52.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V V NL K+DEK +R++F G++E +++ +D + ++RGF T+ F + +A +S LN
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLN 333
Query: 222 NQNLFER--RITVRMDRVA 238
N L R R++++ + A
Sbjct: 334 NFELAGRCIRLSIKQESQA 352
Score = 52 (23.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 53 STVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLV 85
S VG V V I+ D TG+ +G VEF + V
Sbjct: 191 SAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 123 (48.4 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
LG V++ N +D+++L+E+F G +V++ D+ GKS+GFG V F+
Sbjct: 15 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 74
Query: 212 EAVQSISMLNNQNLFERRITV-RMDRVADR 240
+A +++ +N + L ++I V R + +R
Sbjct: 75 DAQKAVDEMNGKELNGKQIYVGRAQKKVER 104
Score = 107 (42.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 186
Query: 222 NQ 223
+
Sbjct: 187 GR 188
Score = 80 (33.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 47 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 98
Score = 56 (24.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 130 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 184
Query: 577 IDGKII 582
++G+I+
Sbjct: 185 MNGRIV 190
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 100 (40.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLDDTK 169
Score = 76 (31.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 73 NGYDYGQCRLRVEFPR 88
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 100 (40.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLDDTK 169
Score = 76 (31.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 73 NGYDYGQCRLRVEFPR 88
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 100 (40.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLDDTK 169
Score = 76 (31.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 73 NGYDYGQCRLRVEFPR 88
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 100 (40.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A+++ G +G+V + + + A+ +D T+
Sbjct: 114 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLDDTK 170
Score = 76 (31.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL V EK L ++F G++ +E+ ++ G F V F+ P +A +I
Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELK-NRHGLVP-FAFVRFEDPRDAEDAIYGR 73
Query: 221 NNQNLFERRITVRMDR 236
N + + R+ V R
Sbjct: 74 NGYDYGQCRLRVEFPR 89
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 131 (51.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVE 212
G + P K+++ NL+ +D K + + F + G + N +A D+DG SRG+G V FD
Sbjct: 106 GNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEA 165
Query: 213 A---VQSIS-ML-NNQNLFERRITVRMDRVADR 240
A ++ ++ ML NNQ + + R DR ++
Sbjct: 166 ARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEK 198
Score = 47 (21.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKGD-IGLVRFD 560
R Q + VKNL T Q LR+ F G I ++ +G+ G V ++
Sbjct: 192 RDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYE 251
Query: 561 SEWTAKRAI 569
+ +A A+
Sbjct: 252 NPQSALAAV 260
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 136 (52.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD KV E+ + E+F AG V V+I DKDGK + F V F H +++LN
Sbjct: 12 LFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQFAFVSFKHEESVPYGMNLLN 71
Query: 222 NQNLFERRITVRM---DRVADRLDGPVRLPEGLKSIG 255
L+ R I ++ A + LP G S+G
Sbjct: 72 GIKLYGRPINIQFRSGSSHASQDSNSSCLPHGAASLG 108
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQ 83
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLPEGLKSIGMGLGANG 262
LN L R +R+ V +RLDG + P+G + + +G A G
Sbjct: 154 LNGFELAGR--PMRVGHVTERLDGGTDITFPDGDQELDLG-SAGG 195
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
+ ++V NL Y+ +E +RE+F G V +V + DK GK RGFG VE + ++I
Sbjct: 70 VRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDKAI 128
Query: 218 SMLNNQNLFERRITVR 233
S LN+ +R + VR
Sbjct: 129 SALNDTEFQQRTLKVR 144
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
+ ++V NL Y+ +E +RE+F G V +V + DK GK RGFG VE + ++I
Sbjct: 70 VRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDKAI 128
Query: 218 SMLNNQNLFERRITVR 233
S LN+ +R + VR
Sbjct: 129 SALNDTEFQQRTLKVR 144
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 124 DRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA 183
D + + + N FG ++ + + G+N + +FV NLD VDE+ L + F
Sbjct: 64 DVEYACQILNQVKLFGKPIRVN-RASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 184 GK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G+ V+ ++A D++G+S+G+G V +D A +I +NNQ L + ITV
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Score = 100 (40.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISML 220
+++ NLD KV + L E+ AG V N+ I D+ S GFG EF H + + +L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 221 NNQNLFERRITVR---MDRVADRLDG 243
N LF + I V DR + L G
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIG 98
Score = 61 (26.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 521 VKNLPPTITWQELRDKFRNCGD-IKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMD 573
V NL P + + L D F G +K ++ + KG G V +DS TA AI+ M+
Sbjct: 103 VGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKG-YGFVSYDSFETADAAIEAMN 161
Query: 574 RTRIDGKIIDVTF 586
+ K I V++
Sbjct: 162 NQFLMNKPITVSY 174
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLPEGLKSIGMGLGANGAPLQDVA 269
LN L R +R+ V +RLDG + P+G + + LG+ G LQ +A
Sbjct: 325 LNGFELAGR--PMRVGHVTERLDGGTDITFPDGEQELD--LGSAGGRLQLMA 372
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 135 (52.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVR 233
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQ 83
Score = 37 (18.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSR 471
GN+ ++ S PS+ Y R NM +++
Sbjct: 105 GNSSPTSTS-PSSRYERTMDNMTSSAQ 130
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 314
Query: 220 LNNQNLFERRITVRMDRVADRLDGP--VRLPEGLKSIGMGLGANGAPLQDVA 269
LN L R +R+ V +RLDG + P+G + + LG+ G LQ +A
Sbjct: 315 LNGFELAGR--PMRIGHVTERLDGSTDITFPDGDQELD--LGSAGGRLQLMA 362
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 137 (53.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 43/174 (24%), Positives = 76/174 (43%)
Query: 50 SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
S S G++ ++ D +TG RG V+F+ + A+N M+ + + + L+++ A
Sbjct: 117 SIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFAN 176
Query: 109 EDKXXXXXXXXXXXVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
D D D + NN+S NT + Q + N VF+ L
Sbjct: 177 SDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKIS---------NNVFIRGLP 227
Query: 169 YKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ D+ +L E+F G+V ++ +D SRG G V + A+ ++ LN
Sbjct: 228 IEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSLN 281
Score = 44 (20.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKG-------KGDIGLVRFDSEWTAKRAIDMMD 573
V NLP L F CG I +I +G G VR S + AI+ ++
Sbjct: 386 VYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRG-YGFVRMVSLADSYSAINSIN 444
Query: 574 RTRIDGKIIDVTF 586
++ GK I V+F
Sbjct: 445 GVQVGGKTISVSF 457
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 134 (52.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 104 (41.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 20/79 (25%), Positives = 46/79 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD ++++KL+E F L G + ++ ++ G+ +GFG V F EA ++++ +N
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMN 362
Query: 222 NQNLFERRITVRMDRVADR 240
+ + + + V + + R
Sbjct: 363 GRVVGSKTLHVTLGQARHR 381
Score = 96 (38.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D + L +F G + + ++ D +G S+G+ V FD A ++I
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 163
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 164 HMNGVRLNNRQVYV 177
Score = 81 (33.6 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL TI ++L+++F G I A++ +GKG G+V F S A +A++ M+
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKG-FGVVCFSSFEEASKAVNEMN 362
Query: 574 RTRIDGKIIDVT 585
+ K + VT
Sbjct: 363 GRVVGSKTLHVT 374
Score = 77 (32.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V+++ D TGK +G V +++ + +KAV ++H G+ L + A
Sbjct: 220 SEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRA 274
Score = 67 (28.6 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V VKN I ++L+ F G + ++ K KG G VR+++ A++A+ +
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG-FGFVRYETHEAAQKAVLEL 259
Query: 573 DRTRIDGKIIDV 584
IDGK++ V
Sbjct: 260 HGKSIDGKVLCV 271
Score = 41 (19.5 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH 93
G + + I D T P G V F+ P A+N M+
Sbjct: 42 GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 118 (46.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L++ DE+ L + FR G + V + D++ +SRGFG + F P A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 220 LNNQNLFERRITV 232
+N ++L R+I V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 97 (39.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 233 -RMDRVADR 240
R + +R
Sbjct: 62 GRAQKKVER 70
Score = 39 (18.8 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIK 549
VKNL I + LR +F G I A+ K
Sbjct: 96 VKNLDDGIDDERLRKEFSPFGTITSAKKK 124
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 128 (50.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 47/223 (21%), Positives = 97/223 (43%)
Query: 21 MFQRIETGAP-LEVPVVMDLIQGDASLYQISHLSTVGDVTY-VEILNDDTGKPRGSAIVE 78
++++ P L + V D+I + Y + D ++ +N D K + I+
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 79 FQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKXXXXXXXXXXXVDRDLSALLQNNSSKF 138
Q +RK+ +KG V E E +++ ++ +L N+ F
Sbjct: 87 SQRDPSLRKSGVVCDENGSKGYGFVHFETQE--------AAERAIEK-MNGMLLNDRKVF 137
Query: 139 GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK 198
+ + LG V++ N +D+++L+++F G +V++ D+ GK
Sbjct: 138 VGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 197
Query: 199 SRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADR 240
S+GFG V F+ +A +++ +N + L ++I V R + +R
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 240
Score = 56 (24.8 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD----IGLVRFDSEWTAKRAIDMMDRTR 576
VKNL I + LR +F G I A++ +G G V F S A +A+ T
Sbjct: 266 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TE 320
Query: 577 IDGKII 582
++G+I+
Sbjct: 321 MNGRIV 326
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 120 (47.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-KGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++V+NL +WQ+L+D R G++ +A+ KG+ + G++ F S KRA++ +D T +
Sbjct: 107 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFKSYSDMKRALEKLDGTEV 166
Query: 578 DGKII 582
+G+ I
Sbjct: 167 NGRKI 171
Score = 48 (22.0 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+G VEFD +A ++ LN ++L R+ V R
Sbjct: 38 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 72
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 115 (45.5 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+N +++ R+I R+D+ D R G + G G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
Score = 40 (19.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 445 GNNVYSNQSAP---STDYSRNASNMYGNSRYGSGGNEMD 480
G N + ++S S DY + S G S SGG+ D
Sbjct: 124 GGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISML 220
+FV +D +DEK L ++F G + N+E+ L+ K +RGF VE+ +A ++ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 221 NNQNLFERRITVRMDRV--ADRLDGPVRLPE 249
NN L +RI V + AD P+ L E
Sbjct: 70 NNFELNGKRIHVNYSKTKKADHYK-PIWLDE 99
Score = 94 (38.1 bits), Expect = 0.00083, P = 0.00083
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 43 DASLYQISHLSTVGDVTYVEI-LNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+ SLY I S+ GD+ +E+ LN T K RG A VE+ D + A+ M+ FE G++
Sbjct: 21 EKSLYDI--FSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKR 78
Query: 102 L 102
+
Sbjct: 79 I 79
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISML 220
+FV +D +DEK L ++F G + N+E+ L+ K +RGF VE+ +A ++ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 221 NNQNLFERRITVRMDRV--ADRLDGPVRLPE 249
NN L +RI V + AD P+ L E
Sbjct: 70 NNFELNGKRIHVNYSKTKKADHYK-PIWLDE 99
Score = 94 (38.1 bits), Expect = 0.00083, P = 0.00083
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 43 DASLYQISHLSTVGDVTYVEI-LNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+ SLY I S+ GD+ +E+ LN T K RG A VE+ D + A+ M+ FE G++
Sbjct: 21 EKSLYDI--FSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKR 78
Query: 102 L 102
+
Sbjct: 79 I 79
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L++ DE+ L + F G + V + D++ +SRGFG + F +P A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 220 LNNQNLFERRITV 232
+N ++L R+I V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L++ DE+ L + F G + V + D++ +SRGFG + F +P A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 220 LNNQNLFERRITV 232
+N ++L R+I V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 98 (39.6 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEF--DHPVEAV 214
+ K+FV L+ + E+K+RE F G++E +E+ +D K K RGF + F + PV+ V
Sbjct: 83 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Score = 68 (29.0 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVN-KMHRFETKGRKLVIKEAV 108
+ + G+VT I D +TG+ RG + F+ P V K + K HR + GR + K+A+
Sbjct: 19 YFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLD--GRLIDPKKAM 76
Query: 109 EDK 111
K
Sbjct: 77 AMK 79
Score = 43 (20.2 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNS-RYGSGGN 477
Y QG SG Y P DYS+ ++N YG + R G N
Sbjct: 214 YQQGYGGYGGYDYSGYGYYGY--GPGYDYSQGSAN-YGKTPRRGGHQN 258
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 113 (44.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMG 257
+N +++ R+I R+D+ D R G + G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSAGGRG 102
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 113 (44.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
LS +L+ S+ N G L SL + +K+FV L + D+ L++ F G+V
Sbjct: 7 LSGILRQGVSQSSN--GPVTSMLGSLRY---MSSKLFVGGLSWGTDDSSLKQAFTSFGEV 61
Query: 187 ENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244
+ D++ G+SRGFG V F A +I ++ + L R+I V + +R P
Sbjct: 62 TEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL--ATERSSAP 118
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 135 (52.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V +L + + E LR +F GK++N+ + D D G+S+G+G + F A +++
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLPEGLKSIGMGLGANG 262
LN L R +R+ V +RLDG + P+G + + +G A G
Sbjct: 324 LNGFELAGR--PMRVGHVTERLDGGTDITFPDGDQELDLG-SAGG 365
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 108 (43.1 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 45/186 (24%), Positives = 81/186 (43%)
Query: 51 HLSTVGDVTYVEIL--NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
H S+V D+ ++ N+D + +IV + + VN E K K+ I +
Sbjct: 256 HDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEEESEEEDVNNK---ENKKDKMKIDDNK 312
Query: 109 EDKXXXXXXXXXXXVDRDLSALLQNNSSKFGNTYGLSPQFL---ESLGINCPLINKVFVA 165
E+K D D ++ SK + E +G + ++FV
Sbjct: 313 ENKKEKKKDKKKNKKDNDNDG--DDDESKIKPIKYFEHDYTKEDEDVGES----GRIFVR 366
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISMLNNQN 224
NL Y E+ L +VF GK+ + I +D D K S+G + + P AVQ+++ ++ +
Sbjct: 367 NLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGK- 425
Query: 225 LFERRI 230
+F+ R+
Sbjct: 426 VFQGRL 431
Score = 77 (32.2 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 498 PRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD---- 553
P S +S N +++KNLP T +E+R F G+I+ I K +
Sbjct: 776 PENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHR 835
Query: 554 -IGLVRFDSEWTAKRAIDMMDRTRIDGK 580
G V F +E AK A++ + + G+
Sbjct: 836 GFGFVEFLTEEEAKNAMEALGNSHFYGR 863
Score = 44 (20.5 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 303 DKSSDE-NDAASVNTASKTDSTNAEKDK 329
+KSSD ND V + +KT +T K
Sbjct: 644 EKSSDSSNDKKEVESTTKTAATTTTTKK 671
Score = 38 (18.4 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 447 NVYSNQSAPSTDYSRNASNMYGNSRYGS 474
+V ++AP+ +S N N + GS
Sbjct: 433 HVLPGKAAPAKQFSENKDNNNNGAEGGS 460
Score = 37 (18.1 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 290 KEVLERWDFKLQYDKSSDENDAASVN-TASKTDSTNAEKD 328
KE+ + + D S+D+ + S TA+ T +T D
Sbjct: 635 KEIKKSEKSEKSSDSSNDKKEVESTTKTAATTTTTKKGTD 674
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 115 (45.5 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+N +++ R+I R+D+ D R G + G G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
Score = 40 (19.1 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 445 GNNVYSNQSAP---STDYSRNASNMYGNSRYGSGGNEMD 480
G N + ++S S DY + S G S SGG+ D
Sbjct: 124 GGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 115 (45.5 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+N +++ R+I R+D+ D R G + G G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
Score = 40 (19.1 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 445 GNNVYSNQSAP---STDYSRNASNMYGNSRYGSGGNEMD 480
G N + ++S S DY + S G S SGG+ D
Sbjct: 124 GGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 119 (46.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 59 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 118
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 119 LQKYHTINGHNAEVRKALSRQE 140
Score = 53 (23.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 243 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 289
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 207 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 246
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 119 (46.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 110 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 169
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 170 LQKYHTINGHNAEVRKALSRQE 191
Score = 53 (23.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 254 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 300
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
NK++V +L Y V +L+ F G++E ++ +D++ G+S+GF + + A +++S
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 219 MLNNQNLFERRITVRMDR--VADRL-DG 243
N +L R+I V + R DR DG
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRRDG 105
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
NK++V +L Y V +L+ F G++E ++ +D++ G+S+GF + + A +++S
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 219 MLNNQNLFERRITVRMDR--VADRL-DG 243
N +L R+I V + R DR DG
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRRDG 105
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 118 (46.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISM 219
K+F+ L++ +E+ L +VF G++ V + D++ K SRGFG V F++P +A ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 220 LNNQNLFERRITV 232
+N + + R+I V
Sbjct: 66 MNGKAVDGRQIRV 78
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 114 (45.2 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 157 PLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG--FGTVEFDHPVE 212
P NK ++V LD +V E L+++F G V +V+I DK+ S+G +G VEFD P
Sbjct: 85 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGA 144
Query: 213 AVQSISMLNNQNLFERRITV 232
A +++ LN + + + I V
Sbjct: 145 AERAMQTLNGRRIHQSEIRV 164
Score = 64 (27.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 498 PRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLV 557
P G+ S + Q + + T V NL P T ++ F+N G + ++ +
Sbjct: 289 PTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFI 348
Query: 558 RFDSEWTAKRAIDMMDRTRIDGK 580
+ D+ A AI ++ ++G+
Sbjct: 349 KMDTHENAASAICQLNGYNVNGR 371
Score = 53 (23.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 528 ITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAI 569
+ W + R G + F E + + L D EW RAI
Sbjct: 213 VMWDMKTGRSRGYGFVAFRE-RADAEKALTSMDGEWLGSRAI 253
Score = 38 (18.4 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 309 NDAASVNTASKTDSTNAEKDKIGNL 333
N A NTA+K D++N +G+L
Sbjct: 165 NWAYQSNTANKEDTSNHFHIFVGDL 189
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 119 (46.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQE 192
Score = 54 (24.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 295 YGSGSYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 341
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ L Y+V E+KL++ F GK++ V+I DK+ K RG+ +EF+H + + +
Sbjct: 100 LFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKLAD 159
Query: 222 NQNLFERRITVRMDR 236
+ + RRI V ++R
Sbjct: 160 GKKIENRRILVDIER 174
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ L Y+V E+KL++ F GK++ V+I DK+ K RG+ +EF+H + + +
Sbjct: 100 LFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKLAD 159
Query: 222 NQNLFERRITVRMDR 236
+ + RRI V ++R
Sbjct: 160 GKKIENRRILVDIER 174
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 119 (46.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 99 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 159 LQKYHTINGHNAEVRKALSRQE 180
Score = 53 (23.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 283 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 329
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 247 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 286
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 98 (39.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEF--DHPVEAV 214
+ K+FV L+ + E+K+RE F G++E +E+ +D K K RGF + F + PV+ V
Sbjct: 83 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Score = 68 (29.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVN-KMHRFETKGRKLVIKEAV 108
+ + G+VT I D +TG+ RG + F+ P V K + K HR + GR + K+A+
Sbjct: 19 YFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLD--GRLIDPKKAM 76
Query: 109 EDK 111
K
Sbjct: 77 AMK 79
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 82 (33.9 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 153 GINCPLINKVFVAN-LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
G P +KV V N L + E L+ VF K ++ I +G+ +G+ VEF++
Sbjct: 460 GRGAPSASKVLVVNNLAFSASEDSLQSVFE---KAVSIRIP-QNNGRPKGYAFVEFENVE 515
Query: 212 EAVQSISMLNNQNLFERRITVRMDRVADRLDG 243
++ +++ NN ++ R I + + DR G
Sbjct: 516 DSKEALENCNNTDIEGRSIRLEYSQ-NDRERG 546
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD---IGLVRFDSEWTAKRAIDMMDR 574
T+ VK L T Q L+D F + A + G G V FD+E K A + MD
Sbjct: 558 TLFVKGLSDDTTDQTLKDSFDGAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDD 617
Query: 575 TRIDGKIIDVTF 586
IDG + + +
Sbjct: 618 GEIDGNKVTLDY 629
Score = 65 (27.9 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 67 DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+TG RG A +EF++ + KA+ + + +GR +++
Sbjct: 412 NTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIV 449
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L++ DE+ L + F G + V + D++ +SRGFG + F +P A ++
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 220 LNNQNLFERRITV 232
+N ++L R+I V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 119 (46.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 107 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 166
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 167 LQKYHTINGHNAEVRKALSRQE 188
Score = 53 (23.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 291 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 337
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 255 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 294
Score = 38 (18.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 460 SRNASNMYGNSRYGSGGN 477
SR NSR G GGN
Sbjct: 185 SRQEMQEVQNSRSGRGGN 202
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 119 (46.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 110 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 169
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 170 LQKYHTINGHNAEVRKALSRQE 191
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 294 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 340
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 258 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 297
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV N+DY +++++ F+ G V V I DK G+ +GF VEF VEAVQ LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE-VEAVQEALQLN 152
Query: 222 NQNLFERRITVRMDR 236
L R++ V R
Sbjct: 153 ESELHGRQLKVLQKR 167
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 119 (46.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQE 192
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 295 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 341
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 119 (46.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQE 192
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 295 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 341
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 119 (46.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIF 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQE 192
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 295 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 341
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 106 (42.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
VFV NLD +D K+L ++F GKV + ++A D G S+G+G V+F
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQF 78
Score = 102 (41.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD VD KL E+F G + + ++ + +G S+G G VEF EA +++ +N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 222 NQNLFERRITVRM 234
+ + + I V +
Sbjct: 285 GKMVGNKPIYVSL 297
Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
V VKNL T T +L+ F G+I A + G+ G V F+ A AI+ M+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 574 RTRIDGKIIDV 584
+D K + V
Sbjct: 181 GVVVDEKELHV 191
Score = 61 (26.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
DA L ++ G++T ++ D GK R V F+ + A+ KM+ ++L
Sbjct: 132 DADLKRL--FGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKEL 189
Query: 103 VIKEA 107
+ A
Sbjct: 190 HVGRA 194
>UNIPROTKB|F5H4D6 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HGNC:HGNC:30292 ChiTaRS:G3BP1 EMBL:AC091982
IPI:IPI01011685 ProteinModelPortal:F5H4D6 SMR:F5H4D6
Ensembl:ENST00000543466 ArrayExpress:F5H4D6 Bgee:F5H4D6
Uniprot:F5H4D6
Length = 284
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 40/115 (34%), Positives = 61/115 (53%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
P +++F+ NL ++VD+ +L++ F+ G V VE+ ++ GK FG V FD E VQ
Sbjct: 155 PDSHQLFIGNLPHEVDKSELKDFFQSYGNV--VELRINSGGKLPNFGFVVFDDS-EPVQK 211
Query: 217 ISMLNNQNLF--ERRITV-----RMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
+ + N +F E R+ V R R DR D +R P G + G+G G G P
Sbjct: 212 V-LSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRG-GLGGGMRGPP 264
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
+FV NL Y + E L+ F+ G +E V + D+D G +GFG V F+ P ++V L
Sbjct: 254 IFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESP-DSVMLALKL 312
Query: 221 NNQNLFERRITVR--MDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVAN 270
N L +R+I V+ + + ++ P R EG ++ G G G P Q+ N
Sbjct: 313 NGSTLQQRKIRVKRSVKKEKEKKTPPGRKAEGQRTGG---GLKG-PKQEFRN 360
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 102 (41.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK--GKGDIGLVRFDSEWTAKRAIDMMDRT 575
V+V+ LP + +WQ+L+D R GD+ FAE+ G G+V + + K AI +D T
Sbjct: 124 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDT 182
Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NL + E ++ ++F G++ ++E+ + F VEF+H +A +I +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCF--VEFEHSRDAEDAIKGRD 66
Query: 222 NQNLFERRITVRM 234
NL R+ V +
Sbjct: 67 GYNLDGCRLRVEL 79
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 103 (41.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 103 (41.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
S + VVV LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+
Sbjct: 116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT-GVVEFVRKEDMTYAVRK 174
Query: 572 MDRTR 576
+D T+
Sbjct: 175 LDNTK 179
Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAV 71
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 89 (36.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
+++ L+ V L+EVF G V + +I D D G SR G V F EA++++S +
Sbjct: 199 LYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSM 258
Query: 221 NNQNLFERRITVRMDRVADRLDG 243
N N+ + + + + A++L G
Sbjct: 259 NGANIPFQSTPIYV-KFANQLSG 280
Score = 84 (34.6 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 32/150 (21%), Positives = 61/150 (40%)
Query: 435 MQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXXXXXX 494
M + ++ + NN ++N + + +RN+ N Y N+ Y + N +
Sbjct: 373 MYNNNNNNGNTNNNFNNNGNGNNNNNRNSYNGYDNNNYNNNNNNNNNNFSDDYNGYNNYN 432
Query: 495 XXNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI 554
+ G +SN + N S+ + + NLP I L F G I ++ G
Sbjct: 433 GNSSSNGNNSNNNNNIMSSFP---IHISNLPNNIDETFLYKLFA-FGAISGVQLLNNGQA 488
Query: 555 GLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+ D + T + AI+ ++ I G+ + V
Sbjct: 489 IITYLDYQ-TVQNAINTLNGKIISGRSLKV 517
Score = 46 (21.3 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
N + G V+F D A+ +++ FE + L + A
Sbjct: 145 NSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYA 187
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 114 (45.2 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 37/131 (28%), Positives = 60/131 (45%)
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGF 202
+ P+ +++ P + K+FV L E+K+RE F G+VE++E+ +D K K RGF
Sbjct: 69 IDPKRAKAMKTKEP-VKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGF 127
Query: 203 GTVEF--DHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGA 260
+ F + PV+ + +N L + I V M + + G +G G
Sbjct: 128 CFITFKEEEPVKKIME-KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF--VGRARGR 184
Query: 261 NGAPLQDVANW 271
G P Q NW
Sbjct: 185 GGGPSQ---NW 192
Score = 49 (22.3 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 51 HLSTVGDVTYVEI-LNDDTGKPRGSAIVEFQSPDLVRKAVN-KMHRFETK 98
+ S G+V + L+ TG+ RG V F+ + V K ++ K H+ K
Sbjct: 18 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGK 67
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 455 PSTDYSRNASNM----YGNSRYGSGG 476
PS ++++ SN YGN Y S G
Sbjct: 188 PSQNWNQGYSNYWNQGYGNYGYNSQG 213
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 114 (45.2 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 37/131 (28%), Positives = 60/131 (45%)
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGF 202
+ P+ +++ P + K+FV L E+K+RE F G+VE++E+ +D K K RGF
Sbjct: 70 IDPKRAKAMKTKEP-VKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGF 128
Query: 203 GTVEF--DHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGA 260
+ F + PV+ + +N L + I V M + + G +G G
Sbjct: 129 CFITFKEEEPVKKIME-KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF--VGRARGR 185
Query: 261 NGAPLQDVANW 271
G P Q NW
Sbjct: 186 GGGPSQ---NW 193
Score = 49 (22.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 51 HLSTVGDVTYVEI-LNDDTGKPRGSAIVEFQSPDLVRKAVN-KMHRFETK 98
+ S G+V + L+ TG+ RG V F+ + V K ++ K H+ K
Sbjct: 19 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGK 68
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 455 PSTDYSRNASNM----YGNSRYGSGG 476
PS ++++ SN YGN Y S G
Sbjct: 189 PSQNWNQGYSNYWNQGYGNYGYNSQG 214
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 118 (46.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 99 VKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 159 LQKYHTINGHNAEVRKALSRQE 180
Score = 53 (23.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 283 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 329
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 247 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 286
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 114 (45.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 124 DRDLSALLQNNSSKF-GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
DR + L +NS KF G L ++ +S L +K+FV L +E+++RE+F
Sbjct: 58 DRAIEQL--HNSKKFQGVLNNLQVKYADSEQEK--LASKLFVGMLPRSYEEEQIRELFEP 113
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
G VE++ I + +S+G G ++FD+ A+ +I+ LN L
Sbjct: 114 HGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKL 156
Score = 62 (26.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 35/147 (23%), Positives = 56/147 (38%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDXXXXXXXXXXXXXXXXNPRAGLDS 504
GN + N P + N M GN G+G N N + G
Sbjct: 336 GNGM--NNGGPMGNGMNNGGPM-GNGMNGNGMNGNGMGGPMGNGMNNGMGGMN-QGGPMG 391
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKG---DIGLVR 558
N+ NQS + + V N+P + +L F+ G + A++ K G G V
Sbjct: 392 NKK-NQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVS 450
Query: 559 FDSEWTAKRAIDMMDRTRIDGKIIDVT 585
+D+ +A AI + + GK + V+
Sbjct: 451 YDNPASANLAISNLHGQMMAGKKLKVS 477
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 119 (46.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L Y E+ L E F G + V++ D++ +SRGFG V F++P +A +++
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 220 LNNQNLFERRITV 232
+N + + R I V
Sbjct: 84 MNGKQVDGRMIRV 96
Score = 43 (20.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNE 478
+ +G + + G+ Y + + D S YG G GG E
Sbjct: 120 FFRGSRGRGGGGYGGDRSYGSDRSFGGDRSYGGDRSYGGGDRGYGGGE 167
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
VFV N+ Y + E+++ ++F AGKV N + D++ GK +GFG E+ A ++ L
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
N+ + R++ V + P P G G +GAP
Sbjct: 70 NDTEIMGRKLRVDFSNEKPSTNDPDDGPPG------GANGSGAP 107
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 87 (35.7 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 16/50 (32%), Positives = 34/50 (68%)
Query: 54 TVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
++G+VT V I+ + D+G +G A V F+S DL +A++ ++ + +G+++
Sbjct: 114 SIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Score = 81 (33.6 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKGD--IGLVRFDSEWT 564
SS + + +KNLP IT + L+ F + G I I GK D G V + +
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 565 AKRAIDMMDRTRIDGKIIDVT 585
RA+ +R IDG ++D T
Sbjct: 322 VMRALKNTERYEIDGHMLDCT 342
Score = 48 (22.0 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQS 216
+++F+ N+ E +++ R+ V+ VE+ + G++RGF +E+ + A S
Sbjct: 172 HRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYS 231
Query: 217 ISMLNN 222
++N
Sbjct: 232 KQKMSN 237
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITV 232
+N +++ R+I V
Sbjct: 67 MNGKSVDGRQIRV 79
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/103 (30%), Positives = 54/103 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L + +E+ L +VF G++ V + D++ +SRGFG V F++ +A ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
+N +++ R+I R+D+ D R G S G G G
Sbjct: 67 MNGKSVDGRQI--RVDQAGKSSDNRSRGYRGGSSGGRGFFRGG 107
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 115 (45.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GKV+ +EI D+ GK RGFG FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQE 192
Score = 56 (24.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + S SRN YG YG GG+
Sbjct: 295 YGSGNYNDFGNYNQQPSNYGPMKSGSFGGSRNMEGPYGGGNYGPGGS 341
Score = 41 (19.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 445 GNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
G Y NQ Y N YG YGSG
Sbjct: 272 GGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 117 (46.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L + E+ L + F G + NV +A +++ +SRGFG V F++P +A ++
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 220 LNNQNLFERRITVRMD 235
+N +++ R T+R+D
Sbjct: 66 MNGKSVDGR--TIRVD 79
Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 467 YGNSRYGSGG 476
YG+ YG GG
Sbjct: 132 YGDRSYGGGG 141
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 100 (40.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+ +D T+
Sbjct: 132 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT-GVVEFVRKEDMTYAVRKLDNTK 188
Score = 67 (28.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 24/104 (23%), Positives = 44/104 (42%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYAR 73
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
+ + R+ V R + G G G G GAP
Sbjct: 74 DGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAP 117
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 117 (46.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFD-H-PVEAV- 214
+ K+FV + +E LR+ F GK++ +EI D+ GK RGFG V FD H PV+ +
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 215 -QSISMLNNQNLFERRITVRMD 235
Q +N N R+ R +
Sbjct: 171 LQKHHTINGHNAEVRKALSRQE 192
Score = 53 (23.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGN 477
Y G + + + + Y + + SRN YG YG GG+
Sbjct: 295 YGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGS 341
Score = 43 (20.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 14/44 (31%), Positives = 14/44 (31%)
Query: 432 SQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSG 475
S G G Y NQ Y N YG YGSG
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGG---GYGGGYDN-YGGGNYGSG 298
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+F+ L+ + +EK L+ VF G + V + D+ KSRGF + F++P +A + +
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68
Query: 221 NNQNLFERRITVR 233
N + + + + R
Sbjct: 69 NGKMMVDTLLISR 81
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 107 (42.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSIS 218
+K+F+ L + E+ L E F G+V +I +D+ +S+GFG V F EA +++
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 219 MLNNQNLFERRITVRMDRVADRLDG 243
N Q L R I V + L G
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSLGG 118
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 114 (45.2 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 36/112 (32%), Positives = 49/112 (43%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD-H-PVEAV-- 214
+ K+FV + +E LR+ F GK++ +EI D+ RGFG V FD H PV+ +
Sbjct: 99 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKRGFGFVTFDDHDPVDKIVL 158
Query: 215 QSISMLNNQNLFERRITVR--MDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
Q N N R+ R M V + G R L G G N P
Sbjct: 159 QKYHTKNGHNAEVRKALSRQEMQEVQNSRSGRPRTL--LFGDSRGGGGNSGP 208
Score = 54 (24.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 458 DYSRNASNMYGNSRYGSGGN 477
+Y RN YG YG GG+
Sbjct: 281 NYGRNMGGPYGGGNYGPGGS 300
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 109 (43.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEA 213
N + ++FV NL Y+ E +L VF GK+E + +A D + S+GF V++ P A
Sbjct: 290 NIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAA 349
Query: 214 VQSISMLNNQNLFERRI 230
V++ L+ + +F+ R+
Sbjct: 350 VEAYRNLDGK-IFQGRL 365
Score = 71 (30.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAID 570
R +++KNLP T +++R F G ++ + K D G F S A+ A+D
Sbjct: 696 RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMD 755
Query: 571 MMDRTRIDGKIIDVTF 586
+ T + G+ + + F
Sbjct: 756 ALKNTHLLGRRLVLEF 771
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 100 (40.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
V+V LPP+ +WQ+L+D R GD+ +A++ G G+V F + A+ +D T+
Sbjct: 122 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT-GVVEFVRKEDMTYAVRKLDNTK 178
Score = 66 (28.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/104 (24%), Positives = 46/104 (44%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL + K + +VF G + ++++ + G F VEF+ P +A ++
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGR 73
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
+ + R+ V R + R G R G +G G G P
Sbjct: 74 DGYDYDGYRLRVEFPR-SGRGGG--RGGGGGGGVGAPRGRYGPP 114
>UNIPROTKB|D6RFL5 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00968211
ProteinModelPortal:D6RFL5 SMR:D6RFL5 Ensembl:ENST00000514782
ArrayExpress:D6RFL5 Bgee:D6RFL5 Uniprot:D6RFL5
Length = 137
Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV + V E +L VF G++ + + +D DGK+RG+ V + H EA +++ L
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVREL 131
Query: 221 NNQNL 225
NN +
Sbjct: 132 NNYEI 136
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQS 216
+ +++V ++ Y+ E LR +F +AG V +V I D + G+S+G G V EA ++
Sbjct: 1 MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA 60
Query: 217 ISMLNNQNLFERRITVRMDR 236
I L+ L R ITV + R
Sbjct: 61 IETLDGALLRNRVITVSVAR 80
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQS 216
+ +++V ++ Y+ E LR +F +AG V +V I D + G+S+G G V EA ++
Sbjct: 1 MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA 60
Query: 217 ISMLNNQNLFERRITVRMDR 236
I L+ L R ITV + R
Sbjct: 61 IETLDGALLRNRVITVSVAR 80
WARNING: HSPs involving 243 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 587 472 0.00099 118 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 493
No. of states in DFA: 611 (65 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:07
No. of threads or processors used: 24
Search cpu time: 40.76u 0.10s 40.86t Elapsed: 00:00:23
Total cpu time: 40.82u 0.10s 40.92t Elapsed: 00:00:30
Start: Thu Aug 15 13:40:13 2013 End: Thu Aug 15 13:40:43 2013
WARNINGS ISSUED: 2