RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1534
(587 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 65.3 bits (159), Expect = 7e-14
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSI 217
+K+ V N+ ++ +++++RE+F G+++ V + G RGFG V+F +A ++
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 218 -SMLNNQNLFERRITVRM 234
++ ++ +L+ RR+ +
Sbjct: 69 NALCHSTHLYGRRLVLEW 86
Score = 54.6 bits (131), Expect = 4e-10
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI-------GLVRFDSEWTAKRAID 570
++V+N+P +E+R+ F G++K + K G V F ++ AK+A +
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 571 -MMDRTRIDGKIIDVTF 586
+ T + G+ + + +
Sbjct: 70 ALCHSTHLYGRRLVLEW 86
Score = 41.5 bits (97), Expect = 2e-05
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 50 SHLSTVGDVTYVEILND--DTGKPRGSAIVEFQSPDLVRKAVNKM-HRFETKGRKLVIKE 106
ST G++ V + TG RG V+F + +KA N + H GR+LV++
Sbjct: 27 ELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 86
Query: 107 AVEDK 111
A +
Sbjct: 87 ADSEV 91
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 61.1 bits (148), Expect = 1e-12
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+ V+NLD+ V + ++E+F G ++ + D+ G+S G V F+ +A++++
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 221 NNQNLFERRITVRM 234
N L R + +++
Sbjct: 62 NGVPLDGRPMNIQL 75
Score = 56.5 bits (136), Expect = 6e-11
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMDRT 575
V NL ++ ++++ F G +K A + V F+ + A +A+ +
Sbjct: 5 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 64
Query: 576 RIDGKIIDVTF 586
+DG+ +++
Sbjct: 65 PLDGRPMNIQL 75
Score = 38.4 bits (89), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ G + + D +G+ G+A V F+ KA+ + + GR + I+
Sbjct: 19 ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 76
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 61.1 bits (148), Expect = 1e-12
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDR 574
+R + V NLPP IT +E+R F G I G +R ++ A+ A +D
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN 66
Query: 575 TRIDGKIIDVTF 586
+ GK + V F
Sbjct: 67 MPLRGKQLRVRF 78
Score = 53.8 bits (129), Expect = 6e-10
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++FV NL + E+++R++F GK V K +GFG + + A +
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEV-----FIHKDKGFGFIRLETRTLAEIAKVE 63
Query: 220 LNNQNLFERRITVRM 234
L+N L +++ VR
Sbjct: 64 LDNMPLRGKQLRVRF 78
Score = 34.2 bits (78), Expect = 0.006
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ ++ L A ++ +G++L ++ A
Sbjct: 47 GFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 79
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 59.3 bits (143), Expect = 6e-12
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKD----GKSRGFGTVEFDHPVEAVQSIS 218
F+ NL++ E+ L+ VF G +++ I+ K+ S GFG VE+ P +A +++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 219 MLNNQNLFERRITVRMDRVADR 240
L + ++ VR+ A +
Sbjct: 62 QLQGHTVDGHKLEVRISERATK 83
Score = 56.2 bits (135), Expect = 8e-11
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI---------GLVRFDSEWTAKRAIDM 571
+KNL + T + L+ F G IK I K + G V + A++A+
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62
Query: 572 MDRTRIDGKIIDVTF 586
+ +DG ++V
Sbjct: 63 LQGHTVDGHKLEVRI 77
Score = 37.7 bits (87), Expect = 3e-04
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
G VE++ P+ +KA+ ++ G KL ++ +
Sbjct: 36 KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 78
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 59.6 bits (144), Expect = 8e-12
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSIS 218
++V NL + E+++ E+F +G ++ + + LDK + GF VE+ +A ++
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 219 MLNNQNLFERRITVRMDR 236
+N L +R I D
Sbjct: 68 YINGTRLDDRIIRTDWDA 85
Score = 55.0 bits (132), Expect = 3e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG------KGDIGLVRFDSEWTAKRAIDM 571
T+ V NL T +++ + F GDIK + V + S A+ A+
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 572 MDRTRIDGKIIDVTF 586
++ TR+D +II +
Sbjct: 69 INGTRLDDRIIRTDW 83
Score = 38.4 bits (89), Expect = 2e-04
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 50 SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
S GD+ + + D G VE+ S A+ ++ R +
Sbjct: 26 ELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 85
Query: 109 EDKGGRR 115
K GR+
Sbjct: 86 GFKEGRQ 92
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 59.2 bits (143), Expect = 1e-11
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 502 LDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS 561
L +NQSS + TV + +T Q +R F G I + + VRF +
Sbjct: 5 LRFEDVVNQSSP-KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST 63
Query: 562 EWTAKRAIDMMDRTRIDGKIIDVTF 586
+A AI ++ T I+G ++ +
Sbjct: 64 HESAAHAIVSVNGTTIEGHVVKCYW 88
Score = 50.7 bits (121), Expect = 1e-08
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V+ + + ++ +R+ F G++ + + +G+ V F A +I +
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAIVSV 74
Query: 221 NNQNLFERRITVRMDR 236
N + + +
Sbjct: 75 NGTTIEGHVVKCYWGK 90
Score = 27.6 bits (61), Expect = 1.5
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G + + + +G + V F + + A+ ++ +G +
Sbjct: 37 QTFSPFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 59.3 bits (143), Expect = 1e-11
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI---GLVRFDSEWTAKRAIDMMDR 574
+ ++NLP IT +E+ D F G I+ + + V ++ + AK A D +
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 575 TRIDGKIIDVTF 586
+ + + V +
Sbjct: 69 FNVCNRYLVVLY 80
Score = 59.3 bits (143), Expect = 2e-11
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++ NL YK+ +++ ++F G + + + ++RG V ++ +A +
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 220 LNNQNLFERRITVRM---DRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
L+ N+ R + V +R ++D + E LK + G N P
Sbjct: 66 LSGFNVCNRYLVVLYYNANRAFQKMDTKKK-EEQLKLLKEKYGINTDP 112
Score = 41.5 bits (97), Expect = 2e-05
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
G + +I +T + RG+A V ++ + A + + F R LV+
Sbjct: 26 DIFGKYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 83
Query: 110 DKGGRR 115
++ ++
Sbjct: 84 NRAFQK 89
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 58.1 bits (140), Expect = 1e-11
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L ++ ++ LRE F G+V+ + D +SRGFG V F + ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 220 LNNQNLFERRITVRM 234
+ L + I ++
Sbjct: 62 -SRHELDSKTIDPKV 75
Score = 51.9 bits (124), Expect = 2e-09
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG------LVRFDSEWTAKRAIDMM 572
+ + L T + LR+ F G++K + V F + + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-Q 61
Query: 573 DRTRIDGKIIDV 584
R +D K ID
Sbjct: 62 SRHELDSKTIDP 73
Score = 36.9 bits (85), Expect = 5e-04
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
T + RG V F V K + R E + + K A
Sbjct: 38 TKRSRGFGFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVA 76
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 57.2 bits (138), Expect = 3e-11
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIA-LDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V +L V E L E F AG + ++ + +S G+ V F P +A +++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 220 LNNQNLFERRITVR 233
+N + + + +
Sbjct: 62 MNFDVIKGKPVRIM 75
Score = 55.3 bits (133), Expect = 2e-10
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDR 574
V +L P +T L +KF G I + + V F A+RA+D M+
Sbjct: 5 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 64
Query: 575 TRIDGKIIDVTF 586
I GK + + +
Sbjct: 65 DVIKGKPVRIMW 76
Score = 38.4 bits (89), Expect = 1e-04
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 50 SHLSTVGDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
S G + + + + T + G A V FQ P +A++ M+ KG+ + I +
Sbjct: 19 EKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78
Query: 109 ED 110
D
Sbjct: 79 RD 80
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 57.3 bits (138), Expect = 6e-11
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSIS 218
VF L ++ + L + F GKV +V I D++ +S+G VEF ++V
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI-QSVPLAI 77
Query: 219 MLNNQNLFERRITVR 233
L Q L I V+
Sbjct: 78 GLTGQRLLGVPIIVQ 92
Score = 45.4 bits (107), Expect = 7e-07
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 505 NRSMNQSSNIERD--TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGL 556
++ S ERD TV L I ++L D F G ++ I + I
Sbjct: 5 REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAY 64
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
V F + AI + R+ G I V
Sbjct: 65 VEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 93
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 56.5 bits (136), Expect = 7e-11
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG------LVRFDSEWTAKRAIDM 571
++V LP +T +EL FR G I I G V F SE ++RAI +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 572 MDRTRIDGKIIDVTF 586
++ + K + V++
Sbjct: 64 LNGITVRNKRLKVSY 78
Score = 54.6 bits (131), Expect = 3e-10
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENV-EIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ V L + +++L +FR G + + K G S G+ V+F +++ ++I +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 220 LNNQNLFERRITVRMDR 236
LN + +R+ V R
Sbjct: 64 LNGITVRNKRLKVSYAR 80
Score = 35.0 bits (80), Expect = 0.003
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 50 SHLSTVGDVTYVE-ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ +G + + + TG G A V+F S ++A+ ++ + ++L + A
Sbjct: 21 ALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 79
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 56.6 bits (136), Expect = 7e-11
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
+ V+NL + + + + +F N +K D V F + A A+ ++ +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 578 DGKIIDVTF 586
DG I+VT
Sbjct: 70 DGSPIEVTL 78
Score = 47.7 bits (113), Expect = 8e-08
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL E+ + + F + K R + V F + +AV+++ L
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEAMKAL 64
Query: 221 NNQNLFERRITVRMDRVADR 240
N + L I V + + D+
Sbjct: 65 NGKVLDGSPIEVTLAKPVDK 84
Score = 33.1 bits (75), Expect = 0.014
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ K R A V F + + +A+ ++ G + + A
Sbjct: 35 GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 79
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 56.2 bits (135), Expect = 2e-10
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ ++ V NL Y V L ++F G V + ++ +++ PV A +
Sbjct: 7 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT---FTKNNQFQALLQYADPVSAQHAKL 63
Query: 219 MLNNQNLFERRITVRMD 235
L+ QN++ T+R+D
Sbjct: 64 SLDGQNIYNACCTLRID 80
Score = 46.2 bits (109), Expect = 6e-07
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI--KGKGDIGLVRFDSEWTA 565
M S + R ++V+NL +T L F G + K L+++ +A
Sbjct: 1 MAGQSPVLR--IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58
Query: 566 KRAIDMMDRTRI--DGKIIDVTF 586
+ A +D I + + F
Sbjct: 59 QHAKLSLDGQNIYNACCTLRIDF 81
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 55.4 bits (133), Expect = 2e-10
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKGDIGLVRFDSEWTAKRAIDMMD 573
+ +KNL +I + L D F G+I ++ G G V F+++ A+RAI+ M+
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 574 RTRIDGKIIDVTF 586
++ + + V
Sbjct: 70 GMLLNDRKVFVGR 82
Score = 53.9 bits (129), Expect = 6e-10
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+F+ NLD +D K L + F G + + ++ + + S+G+G V F+ A ++I
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDENGSKGYGFVHFETQEAAERAIEK 67
Query: 220 LNNQNLFERRITVR 233
+N L +R++ V
Sbjct: 68 MNGMLLNDRKVFVG 81
Score = 35.0 bits (80), Expect = 0.003
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 27 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 85
Query: 110 DK 111
K
Sbjct: 86 RK 87
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 55.8 bits (134), Expect = 2e-10
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L ++ E+ LR + GK+ + + D +SRGFG V F E +++
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 220 LNNQNLFERRITVR 233
++ R + +
Sbjct: 82 -RPHSIDGRVVEPK 94
Score = 48.5 bits (115), Expect = 7e-08
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDI---KFAEIKGKGDI---GLVRFDSEWTAKRAIDM 571
+ + L T + LR+ + G + G V F S A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 572 MDRTRIDGKIIDV 584
+ IDG++++
Sbjct: 82 RPHS-IDGRVVEP 93
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.0 bits (132), Expect = 2e-10
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+K+F+ L +++ +++E+ G ++ + D G S+G+ E+ Q+I+
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 219 MLNNQNLFERRITVRM 234
LN L ++++ V+
Sbjct: 62 GLNGMQLGDKKLLVQR 77
Score = 48.1 bits (114), Expect = 6e-08
Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 519 VVVKNLPPTITWQELRD---KFRNCGDIKFAEIKGKG---DIGLVRFDSEWTAKRAIDMM 572
+ + LP + ++++ F + G + +AI +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 573 DRTRIDGKIIDVTF 586
+ ++ K + V
Sbjct: 64 NGMQLGDKKLLVQR 77
Score = 40.4 bits (94), Expect = 3e-05
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
TG +G A E+ ++ +A+ ++ + +KL+++ A G +N
Sbjct: 39 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA---SVGAKN 84
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 55.1 bits (132), Expect = 2e-10
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSEWTAKRAI 569
+ ++V LP +T +E R F + G+I+ ++ G V + A++AI
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 570 DMMDRTRIDGKIIDVTF 586
+ ++ R+ K I V++
Sbjct: 62 NTLNGLRLQTKTIKVSY 78
Score = 50.5 bits (120), Expect = 1e-08
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKV-ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ V L + +++ R +F G++ + G+S G+G V + P +A ++I+
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 220 LNNQNLFERRITVRMDR 236
LN L + I V R
Sbjct: 64 LNGLRLQTKTIKVSYAR 80
Score = 35.9 bits (82), Expect = 0.001
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ TG+ G V + P KA+N ++ + + + + A
Sbjct: 37 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 55.0 bits (132), Expect = 2e-10
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
++V NL + + +L +F G + I DK G+ RG V ++ EA ++IS
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 220 LNNQNLF--ERRITVR 233
LNN + ++VR
Sbjct: 68 LNNVIPEGGSQPLSVR 83
Score = 54.6 bits (131), Expect = 4e-10
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSEWTAKRAIDM 571
+ V NLP TIT +L F G I I + VR++ A+ AI
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 572 MDRTRIDG--KIIDVTF 586
++ +G + + V
Sbjct: 68 LNNVIPEGGSQPLSVRL 84
Score = 33.0 bits (75), Expect = 0.013
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 50 SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKE 106
+ G + IL D TG+PRG A V + + ++A++ ++ +G + L ++
Sbjct: 25 TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 84
Query: 107 A 107
A
Sbjct: 85 A 85
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.1 bits (132), Expect = 2e-10
Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIAL------DKDGKSRGFGTVEFDHPVEAV 214
+++V N+ + + E+ + + F ++ + A + + + F +EF E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 215 QSISMLNNQNLFERRITVRMDR 236
Q++ + + + +R
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRPH 83
Score = 44.4 bits (104), Expect = 1e-06
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI-----------GLVRFDSEWTAK 566
+ V N+P IT + + D F + + + F S
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 567 RAIDMMDRTRIDGKIIDV 584
+A+ D G+ + +
Sbjct: 63 QAM-AFDGIIFQGQSLKI 79
Score = 31.6 bits (71), Expect = 0.046
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 48 QISHLSTVGDVTYVE------ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+ + + + +L + + A +EF+S D +A+ +G+
Sbjct: 18 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQS 76
Query: 102 LVIK 105
L I+
Sbjct: 77 LKIR 80
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 54.7 bits (131), Expect = 5e-10
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 510 QSSNIERD--TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-IGLVRFDSEWTAK 566
+S R T++ KNL IT EL++ F + +I+ GK I + F SE A+
Sbjct: 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAE 67
Query: 567 RAIDMMDRTRIDGKIIDVTF 586
+ ++ IDG+ + + +
Sbjct: 68 KNLEEKQGAEIDGRSVSLYY 87
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ NL + + E +L+EVF A ++ V DGKS+G +EF +A +++
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQ----DGKSKGIAYIEFKSEADAEKNLEE 72
Query: 220 LNNQNLFERRITVR 233
+ R +++
Sbjct: 73 KQGAEIDGRSVSLY 86
Score = 39.6 bits (92), Expect = 9e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 67 DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
GK +G A +EF+S K + + E GR + + +KGG R
Sbjct: 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-GEKGGTR 95
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 54.3 bits (130), Expect = 5e-10
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSEWTAKRAIDM 571
+ V L + + L F GDI +I + V F+ A AID
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 572 MDRTRIDGKIIDVTF 586
M+ + + G+ I V
Sbjct: 67 MNESELFGRTIRVNL 81
Score = 52.0 bits (124), Expect = 3e-09
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSIS 218
++V L +VD+K L F G + +++I LD + K RGF VEF+ +A +I
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 219 MLNNQNLFERRITVRM 234
+N LF R I V +
Sbjct: 66 NMNESELFGRTIRVNL 81
Score = 36.6 bits (84), Expect = 8e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 50 SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ GD+T ++I D T K RG A VEF+ + A++ M+ E GR + + A
Sbjct: 24 AAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.8 bits (129), Expect = 5e-10
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSISM 219
K+F+ L + +K L++ F G+V + + LD SRGFG V F + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 220 LNNQNLFERRITVR 233
L + I +
Sbjct: 61 -KEHKLNGKVIDPK 73
Score = 49.2 bits (117), Expect = 2e-08
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSEWTAKRAIDMM 572
+ + L T ++L+D F G++ +K G V F + + +D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 573 DRTRIDGKIIDV 584
+ ++GK+ID
Sbjct: 62 EHK-LNGKVIDP 72
Score = 30.7 bits (69), Expect = 0.062
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 67 DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
TG+ RG V F+ + V K + + G+ + K A
Sbjct: 36 ITGRSRGFGFVLFKESESVDKVM-DQKEHKLNGKVIDPKRA 75
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.9 bits (129), Expect = 6e-10
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 161 KVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L ++ ++ LR F + + V + +SRGFG V + E +++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 220 LNNQNLFERRITVR 233
+ R + +
Sbjct: 68 -RPHKVDGRVVEPK 80
Score = 47.7 bits (113), Expect = 9e-08
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG------DIGLVRFDSEWTAKRAIDM 571
+ + L T + LR F G + + G V + + A++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 572 MDRTRIDGKIIDV 584
+DG++++
Sbjct: 68 RPHK-VDGRVVEP 79
Score = 36.6 bits (84), Expect = 6e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
T + RG V + + + V A+N + GR + K AV
Sbjct: 44 TKRSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAV 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 53.5 bits (128), Expect = 7e-10
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 509 NQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSE 562
N+++ + V L T ++LR+ F G I I V F++
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
AK A + + +DG+ I V
Sbjct: 62 DDAKEAKERANGMELDGRRIRV 83
Score = 53.2 bits (127), Expect = 9e-10
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSIS 218
+ V L E+ LREVF G + +V I D+ +SRGF V F++ +A ++
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 219 MLNNQNLFERRITV 232
N L RRI V
Sbjct: 70 RANGMELDGRRIRV 83
Score = 31.6 bits (71), Expect = 0.044
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+ + + RG A V F++ D ++A + + E GR++ +
Sbjct: 44 DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 53.5 bits (128), Expect = 8e-10
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVEN-VEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P + V N+ + V ++ + F + V + ++ G G V F+ EA
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 66
Query: 216 SISMLNNQNLFERRITVRM 234
++ LN++ + R++ + +
Sbjct: 67 AVIDLNDRPIGSRKVKLVL 85
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI-------KGKGDIGLVRFDSEWTAKRAID 570
+ V+N+P T++ E+ D F I + G +V F+S A A+
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTG-EAMVAFESRDEATAAVI 69
Query: 571 MMDRTRIDGKIIDVTF 586
++ I + + +
Sbjct: 70 DLNDRPIGSRKVKLVL 85
Score = 41.2 bits (96), Expect = 2e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 61 VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
V + ++ G P G A+V F+S D AV ++ RK+ +
Sbjct: 40 VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 53.2 bits (127), Expect = 1e-09
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG------KGDIGLVRFDSEWTAKR 567
+E + V ++ E+++KF + G+IK + LV +++ A
Sbjct: 5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 568 AIDMMDRTRIDGKIIDVTF 586
A + ++ I G+ I V +
Sbjct: 65 AKEALNGAEIMGQTIQVDW 83
Score = 48.2 bits (114), Expect = 7e-08
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSIS 218
+FV ++ + E +++E F G+++N+ + LD+ S+G+ VE++ +A+ +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 219 MLNNQNLFERRITV 232
LN + + I V
Sbjct: 68 ALNGAEIMGQTIQV 81
Score = 31.6 bits (71), Expect = 0.041
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 77 VEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112
VE+++ A ++ E G+ + + KG
Sbjct: 54 VEYETHKQALAAKEALNGAEIMGQTIQVDWCFV-KG 88
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 53.6 bits (128), Expect = 1e-09
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSIS 218
++FV NL Y E+ L ++F G + + +D K +GF V F P AV++ +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 219 MLNNQNLFERRITVRM 234
++ Q R + V
Sbjct: 69 EVDGQVFQGRMLHVLP 84
Score = 50.5 bits (120), Expect = 1e-08
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFA------EIKGKGDIGLVRFDSEWTAKRAIDM 571
+ V+NL T + ++L F G + K V F A +A
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 572 MDRTRIDGKIIDVTF 586
+D G+++ V
Sbjct: 70 VDGQVFQGRMLHVLP 84
Score = 37.8 bits (87), Expect = 4e-04
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 71 PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGG 121
P+G A V F P+ KA ++ +GR L + + K ++ G
Sbjct: 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQSGPSSG 99
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 52.9 bits (127), Expect = 1e-09
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPP-TITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSE 562
S S V + NL + ++ F G I V++ +E
Sbjct: 3 SGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIV--GCSVHKGFAFVQYVNE 60
Query: 563 WTAKRAIDMMDRTRIDGKIIDVTF 586
A+ A+ D I G+++D+
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINL 84
Score = 51.8 bits (124), Expect = 4e-09
Identities = 12/78 (15%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 160 NKVFVANLD-YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
++VF+ NL+ V + + +F GK+ + +GF V++ + A +++
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-------HKGFAFVQYVNERNARAAVA 68
Query: 219 MLNNQNLFERRITVRMDR 236
+ + + + + + +
Sbjct: 69 GEDGRMIAGQVLDINLAA 86
Score = 39.1 bits (91), Expect = 1e-04
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S G + + +G A V++ + R AV G+ L I A E
Sbjct: 36 IFSKYGKIVGCSV-------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP 88
Query: 111 KGGRRNMGGG 120
K R G
Sbjct: 89 KVNRSGPSSG 98
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 53.1 bits (127), Expect = 2e-09
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGDIGLVRFDSEWTAKRAIDMMDR 574
+ V NLPP I +++ D F G I+ ++K G V F+ A+ A+ D
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 575 TRIDGKIIDVTF 586
DG + V F
Sbjct: 76 YDYDGYRLRVEF 87
Score = 52.8 bits (126), Expect = 2e-09
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V NL + K + +VF G + ++++ F VEF+ P +A ++
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAVYG 72
Query: 220 LNNQNLFERRITVRMDR 236
+ + R+ V R
Sbjct: 73 RDGYDYDGYRLRVEFPR 89
Score = 39.7 bits (92), Expect = 7e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
G + +++ N A VEF+ P AV ++ G +L ++
Sbjct: 33 DVFYKYGAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 90
Query: 110 DKG 112
+G
Sbjct: 91 GRG 93
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 52.9 bits (126), Expect = 2e-09
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVR-------------- 558
+ + + V+ L ++T +L D F+ CG +K + G+ I +
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 559 FDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
++ TAK A++ D G + V+
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSL 92
Score = 50.5 bits (120), Expect = 1e-08
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD---------KDGKSRGFGTVEFDHP 210
+ ++V L+ V L + F+ G V+ + + GK +G TV ++ P
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 211 VEAVQSISMLNNQNLFERRITVRMDR 236
A ++ + ++ ++ V + R
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLAR 94
Score = 35.9 bits (82), Expect = 0.002
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 38 DLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97
DL + G L+ +TGKP+G A V ++ P + AV +
Sbjct: 24 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 83
Query: 98 KGRKLVIKEA 107
+G KL + A
Sbjct: 84 QGSKLKVSLA 93
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 51.9 bits (124), Expect = 2e-09
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV L E+K+RE F G+VE++E+ +D K RGF + F + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 220 LNNQNLFERRITVRM 234
N+ + +++
Sbjct: 61 -KYHNVGLSKCEIKV 74
Score = 51.1 bits (122), Expect = 5e-09
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK------GDIGLVRFDSEWTAKRAIDMM 572
+ V L P +++R+ F G+++ E+ + F E K+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 573 DRTRIDGKIIDV 584
+ ++
Sbjct: 62 YHN-VGLSKCEI 72
Score = 32.2 bits (73), Expect = 0.022
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 50 SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ G+V +E+ D T K RG + F+ + V+K + K + K IK A
Sbjct: 18 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH-NVGLSKCEIKVA 75
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 54.8 bits (132), Expect = 3e-09
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKT 320
++ + +WL + VQKL ++ISN + EVLERW F ++ DK++ ++ A +
Sbjct: 62 VEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAI 117
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.4 bits (125), Expect = 3e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK---SRGFGTVEFDHPV 211
NC ++F+ + +++ E + I +RGF VE++
Sbjct: 1 NC----RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHR 56
Query: 212 EAVQSISMLNNQN--LFERRITVRM 234
A + L L+ +I V
Sbjct: 57 AAAMARRKLMPGRIQLWGHQIAVDW 81
Score = 43.1 bits (101), Expect = 4e-06
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI--------GLVRFDSEWTAKRAI 569
+ + +P +E+ ++ + I V ++S A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 570 DMMD--RTRIDGKIIDVTF 586
+ R ++ G I V +
Sbjct: 63 RKLMPGRIQLWGHQIAVDW 81
Score = 35.1 bits (80), Expect = 0.003
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKM--HRFETKGRKLVIKEA 107
K RG A VE++S A K+ R + G ++ + A
Sbjct: 41 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 82
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 51.6 bits (123), Expect = 3e-09
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
++V+ L + +K+L ++F G++ I +D+ SRG G + FD +EA ++I
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 220 LNNQNLF--ERRITVR 233
LN Q ITV+
Sbjct: 68 LNGQKPSGATEPITVK 83
Score = 50.4 bits (120), Expect = 9e-09
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI------GLVRFDSEWT 564
S++I + V LP T+T +EL F G I + I G +RFD
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 565 AKRAIDMMDRTRIDGKI--IDVTF 586
A+ AI ++ + G I V F
Sbjct: 61 AEEAIKGLNGQKPSGATEPITVKF 84
Score = 29.2 bits (65), Expect = 0.26
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 71 PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
RG + F +A+ ++ + G I
Sbjct: 47 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 81
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 51.7 bits (123), Expect = 4e-09
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 521 VKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-------IGLVRFDSEWTAKRAIDMMD 573
+ NL P I + L D F G I + + F S + AI+ M+
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 62
Query: 574 RTRIDGKIIDVTF 586
+ + I V++
Sbjct: 63 GQYLCNRPITVSY 75
Score = 49.4 bits (117), Expect = 2e-08
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIA--LDKDGKSRGFGTVEFDHPVEAVQSISM 219
+F+ NLD ++DEK L + F G + G S+G+ + F + +I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 220 LNNQNLFERRITVRM 234
+N Q L R ITV
Sbjct: 61 MNGQYLCNRPITVSY 75
Score = 37.0 bits (85), Expect = 6e-04
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 50 SHLSTVGDVTYVEILN--DDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G + + DTG +G A + F S D A+ M+ R + + A
Sbjct: 17 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 76
Query: 108 V--EDKG 112
+ KG
Sbjct: 77 FKKDSKG 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.6 bits (123), Expect = 5e-09
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDI------KFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
TV V L ++ L + F G + K G V F SE A AI +
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 572 MDRTRIDGKIIDVTF 586
MD ++ GK I V
Sbjct: 71 MDMIKLYGKPIRVNK 85
Score = 48.9 bits (116), Expect = 5e-08
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKV-ENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
V+V LD KV E L E+F AG V G+ +G+G VEF +A +I
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 219 MLNNQNLFERRITVRM 234
+++ L+ + I V
Sbjct: 70 IMDMIKLYGKPIRVNK 85
Score = 33.5 bits (76), Expect = 0.013
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNM 117
+ TG+ +G VEF S + A+ M + G+ + + +A +N+
Sbjct: 44 DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN---KNL 93
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.6 bits (123), Expect = 5e-09
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++ V+N+ ++ + LR++F GK+ +VEI ++ S+GFG V F++ +A ++
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREK 70
Query: 220 LNNQNLFERRITVRM 234
L+ + R+I V
Sbjct: 71 LHGTVVEGRKIEVNN 85
Score = 50.4 bits (120), Expect = 1e-08
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG----LVRFDSE 562
S N S + V N+P +LR F G I EI V F++
Sbjct: 2 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 61
Query: 563 WTAKRAIDMMDRTRIDGKIIDVTF 586
A RA + + T ++G+ I+V
Sbjct: 62 ADADRAREKLHGTVVEGRKIEVNN 85
Score = 34.7 bits (79), Expect = 0.005
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
+ +G V F++ +A K+H +GRK+ + A
Sbjct: 44 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 88
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 50.8 bits (121), Expect = 7e-09
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
NK+++ NL V LR++F ++ G+ V++ A+++I
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIET 56
Query: 220 LNNQ-NLFERRITVR 233
L+ + L + + V
Sbjct: 57 LSGKVELHGKIMEVD 71
Score = 45.8 bits (108), Expect = 3e-07
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMD-RTR 576
+ + NL P +T +LR F + ++ K V + + A RAI+ + +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 577 IDGKIIDVTF 586
+ GKI++V +
Sbjct: 63 LHGKIMEVDY 72
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 7e-09
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFR------NCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
T+ V NL +L++ FR K + F A RAI
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 572 MDRTRIDGKIIDVTF 586
+ D I++V +
Sbjct: 70 VSGFGYDHLILNVEW 84
Score = 48.9 bits (116), Expect = 4e-08
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+ V NL E L+E+FR G + + +A DK G+S+GF + F +A ++I+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 219 MLNNQNLFERRITVRMDR 236
++ + V +
Sbjct: 69 GVSGFGYDHLILNVEWAK 86
Score = 31.9 bits (72), Expect = 0.036
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
TG+ +G A + F + +A+ + F L ++ A
Sbjct: 46 TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 85
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 50.6 bits (120), Expect = 7e-09
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG------KGDIGLVRFDSEWTAKRAIDM 571
T+ + N PP+ T + +RD ++ + + + S+ A+ ++
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 572 MDRTRIDGKIIDVTF 586
++ +I+G +
Sbjct: 63 LNGLKIEGYTLVTKV 77
Score = 50.6 bits (120), Expect = 9e-09
Identities = 9/77 (11%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVE-NVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++ N ++ +R++ + V ++ + + SR F ++ +A +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 220 LNNQNLFERRITVRMDR 236
LN + + ++
Sbjct: 63 LNGLKIEGYTLVTKVSN 79
Score = 27.8 bits (61), Expect = 0.98
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 70 KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
R A ++ S + R V K++ + +G LV K +
Sbjct: 41 TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 50.4 bits (120), Expect = 1e-08
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 518 TVVVKNLPPTITWQELRD-------KFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAID 570
T+ + NL I EL+ +F DI + V F +A A+
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 571 MMDRTRIDGKIIDVTF 586
M K + + +
Sbjct: 65 SMQGFPFYDKPMRIQY 80
Score = 47.7 bits (113), Expect = 9e-08
Identities = 13/86 (15%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 160 NKVFVANLDYKVDEKKLREVFRL--AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+ +++ NL+ K+ + +L++ + + ++I + + K RG V F A ++
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 218 SMLNNQNLFERRITVRM-----DRVA 238
+ +++ + ++ D +A
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIA 89
Score = 33.5 bits (76), Expect = 0.011
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 71 PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
RG A V F+ A+ M F + + I+ A D
Sbjct: 45 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 84
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 50.0 bits (119), Expect = 2e-08
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKGDIGLVRFDSEWTAKRAIDMMD 573
T+ V NL +T + F G K ++ V F A A+ M+
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 574 RTRIDGKIIDVTF 586
+I GK + V +
Sbjct: 70 GRKILGKEVKVNW 82
Score = 48.5 bits (115), Expect = 5e-08
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V NL V E + ++F G ++ ++ + + + VEF +A +++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAA 67
Query: 220 LNNQNLFERRITVRM 234
+N + + + + V
Sbjct: 68 MNGRKILGKEVKVNW 82
Score = 31.2 bits (70), Expect = 0.059
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
S +G ++ + VEF A+ M+ + G+++ + A
Sbjct: 27 QLFSQIGPCKSCKM-ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-T 84
Query: 110 DKGGRR 115
++
Sbjct: 85 TPSSQK 90
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.1 bits (119), Expect = 2e-08
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 499 RAGLDSNRSMNQSSNIERDTVVVK-NLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLV 557
+ L + + S + VV L ++ +L CG + +
Sbjct: 2 KHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFA 61
Query: 558 RFDSEWTAKRAIDMMDRTRI-DGKIIDVTFF 587
R+ + +KRA ++ + D +T +
Sbjct: 62 RYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92
Score = 38.5 bits (89), Expect = 2e-04
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V L V +L V G V+ + ++ + + E+ ++ LN
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDAL-----LMPPNKPYSFARYRTTEESKRAYVTLN 77
Query: 222 NQNLFE---RRITVR 233
+ + + ++IT+
Sbjct: 78 GKEVVDDLGQKITLY 92
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.6 bits (118), Expect = 2e-08
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+ + V L +K E+ L+E F G+V V++ D G S+GFG V F V+ +S
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 219 MLNNQNLFERRITVRM 234
+ R ++
Sbjct: 69 --QRHMIDGRWCDCKL 82
Score = 46.9 bits (111), Expect = 2e-07
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRF 559
R++ ++S++ +V LP T Q+L++ F G++ ++K G VRF
Sbjct: 3 RAVQKTSDL-----IVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF 57
Query: 560 DSEWTAKRAIDMMDRTRIDGKIIDVTF 586
T + + IDG+ D
Sbjct: 58 TEYETQVKVMSQRH--MIDGRWCDCKL 82
Score = 36.9 bits (85), Expect = 7e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 67 DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
TG +G V F + K +++ H + GR K +
Sbjct: 45 KTGHSKGFGFVRFTEYETQVKVMSQRHMID--GRWCDCKLPNSKQ 87
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 49.0 bits (116), Expect = 2e-08
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAG-KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
K+FV L + ++ F G + + + + RGFG V F+ + V+ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59
Query: 220 LNNQNLFERRITVRM 234
++ + + + +
Sbjct: 60 IHFHEINNKMVECKK 74
Score = 48.2 bits (114), Expect = 5e-08
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIK------FAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
+ V L T ++++ F G + G V F+SE ++ + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 573 DRTRIDGKIIDV 584
I+ K+++
Sbjct: 61 HFHEINNKMVEC 72
Score = 32.4 bits (73), Expect = 0.020
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 58 VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ + + T + RG V F+S D+V K ++H E + + K+A
Sbjct: 27 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EIHFHEINNKMVECKKA 75
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.9 bits (116), Expect = 3e-08
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSI 217
+ K+FV + +E LR+ F GK+E +EI D+ RGF V FD ++V I
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKI 60
Query: 218 SMLNNQNLFERRITVR 233
+ + VR
Sbjct: 61 VIQKYHTVNGHNCEVR 76
Score = 38.2 bits (88), Expect = 2e-04
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK------GDIGLVRFDSEWTAKRAIDM 571
+ V + LRD F G I+ EI V FD + I +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVI 62
Query: 572 MDRTRIDGKIIDV 584
++G +V
Sbjct: 63 QKYHTVNGHNCEV 75
Score = 29.7 bits (66), Expect = 0.20
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ +GK RG A V F D V K V G +++A+
Sbjct: 37 DRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKAL 79
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.9 bits (116), Expect = 5e-08
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+F+ +L + ++ L ++F V + S+ FG V +D+PV A +I
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 219 MLNNQNLFERRITVRMDR 236
+N + +R+ V++ R
Sbjct: 79 SMNGFQIGMKRLKVQLKR 96
Score = 48.5 bits (115), Expect = 6e-08
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGL------ 556
+ +Q E + + +LP Q+L F G++ A++ L
Sbjct: 5 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 64
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
V +D+ +A+ AI M+ +I K + V
Sbjct: 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 94
Score = 31.6 bits (71), Expect = 0.065
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ V + +P + A+ M+ F+ ++L ++
Sbjct: 57 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.5 bits (115), Expect = 7e-08
Identities = 14/76 (18%), Positives = 32/76 (42%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
++ V + + E+ E+ G+VE + + + G V+F +A +++
Sbjct: 27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVI 86
Query: 219 MLNNQNLFERRITVRM 234
LNN+ + I +
Sbjct: 87 DLNNRWFNGQPIHAEL 102
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 495 YGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIK-FAEIKGKGD 553
Y NP ++ V ++ + + G+++ GD
Sbjct: 10 YRNP----QNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD 65
Query: 554 ----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
V+F E A++A+ ++ +G+ I
Sbjct: 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
Score = 38.1 bits (88), Expect = 4e-04
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
G+V + + ++ G+ V+F+ + KAV ++ G+ + +
Sbjct: 47 MEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 47.8 bits (113), Expect = 8e-08
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V++ ++E G+V N+++ +G V FD A + +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET- 66
Query: 221 NNQNLFERRITVRM 234
Q E + +
Sbjct: 67 PGQKYKETDLLILF 80
Score = 41.6 bits (97), Expect = 1e-05
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGD-----IKFAEIKGKGDIGLVRFDSEWTAK 566
++++ +V +K P T ++++ + G ++ K V FDS +AK
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 61
Query: 567 RAIDMMDRTRIDGKIIDVTF 586
+ ++ + + + F
Sbjct: 62 KFVETPGQK-YKETDLLILF 80
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.8 bits (113), Expect = 9e-08
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVEN-VEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
K+FV L + +E+ L +VF G++ V + + +SRGFG V F++ +A ++
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 219 MLNNQNLFERRITVRM 234
+N +++ R+I V
Sbjct: 66 AMNGKSVDGRQIRVDQ 81
Score = 45.1 bits (106), Expect = 1e-06
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD------IGLVRFDSEWTAKRAIDM 571
+ V L Q L F G I + + G V F++ AK A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 572 MDRTRIDGKIIDVTF 586
M+ +DG+ I V
Sbjct: 67 MNGKSVDGRQIRVDQ 81
Score = 40.1 bits (93), Expect = 5e-05
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 60 YVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
V + + +T + RG V F++ D + A+ M+ GR++ + +A + R
Sbjct: 35 VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 89
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 47.8 bits (113), Expect = 9e-08
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++VKNLP QE+ D ++ + K V + A+ AI M +
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAF-VTLLNGEQAQNAIQMFHQYSF 65
Query: 578 DGKIIDVTF 586
GK + V
Sbjct: 66 RGKDLIVQL 74
Score = 43.6 bits (102), Expect = 3e-06
Identities = 8/77 (10%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ + V NL + +++ ++ + +++ V + +A +I M
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD------RNKRTAFVTLLNGEQAQNAIQM 59
Query: 220 LNNQNLFERRITVRMDR 236
+ + + + V++
Sbjct: 60 FHQYSFRGKDLIVQLQP 76
Score = 30.9 bits (69), Expect = 0.079
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 71 PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ +A V + + + A+ H++ +G+ L+++ D
Sbjct: 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 46.7 bits (110), Expect = 1e-07
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 519 VVVKNLPPTITWQELRDKFR------NCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
+ ++ L P T Q+L + + I G V FDS A++A+ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 573 DRTRIDGKII 582
+ + ++
Sbjct: 61 KASGVQAQMA 70
Score = 39.8 bits (92), Expect = 5e-05
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 162 VFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++ L ++ L ++ V I K +G+G V+FD P A ++++ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 221 NNQNLFERRI 230
+ +
Sbjct: 61 KASGVQAQMA 70
Score = 30.1 bits (67), Expect = 0.100
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 77 VEFQSPDLVRKAVNKMHRFETKGRKL 102
V+F SP +KAV + + +
Sbjct: 45 VDFDSPSAAQKAVTALKASGVQAQMA 70
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 46.9 bits (111), Expect = 1e-07
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V D + LR F G + ++ R V ++ A Q+++
Sbjct: 6 NTLYVYGED--MTPTLLRGAFSPFGNIIDL-----SMDPPRNCAFVTYEKMESADQAVAE 58
Query: 220 LNNQNLFERRITVRMDR 236
LN + ++ V + R
Sbjct: 59 LNGTQVESVQLKVNIAR 75
Score = 45.0 bits (106), Expect = 7e-07
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
T+ V +T LR F G+I + + V ++ +A +A+ ++ T++
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV 64
Query: 578 DGKIIDVTF 586
+ + V
Sbjct: 65 ESVQLKVNI 73
Score = 31.1 bits (70), Expect = 0.048
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 60 YVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+ I++ PR A V ++ + +AV +++ + + +L + A
Sbjct: 27 FGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 47.5 bits (112), Expect = 2e-07
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 492 SGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK 551
SG G P R V+V LPP+ +WQ+L+D R GD+ + K
Sbjct: 3 SGSSGGPPTRRSDFR------------VLVSGLPPSGSWQDLKDHMREAGDVCY-ADVQK 49
Query: 552 GDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
+G+V + + + A+ +D T+ + ++
Sbjct: 50 DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY 84
Score = 45.5 bits (107), Expect = 8e-07
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+V V+ L + L++ R D + G G VE+ + ++
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMR------EAGDVCYADVQKDGMGMVEYLRKEDMEYALRK 69
Query: 220 LNNQNLFERRITVRMDRVA-DRLDGPVR 246
L++ RV +R GP
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSSGPSS 97
Score = 27.8 bits (61), Expect = 1.1
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGG 122
+VE+ + + A+ K+ + + + R+ G G
Sbjct: 53 GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYP--ERSSGPSSG 98
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 47.0 bits (111), Expect = 2e-07
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV L Y + LR+ F G +E + D+ KSRG+G V A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
N + R+ V + + + P L++ G +G
Sbjct: 72 P-NPIIDGRKANVNLAYLGAK-------PRSLQT-GFAIG 102
Score = 41.3 bits (96), Expect = 3e-05
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 515 ERDT----VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI------GLVRFDSEWT 564
++DT + V LP T LR F GDI+ A + G V
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 565 AKRAIDMMDRTRIDGKIIDVTF 586
A+RA + IDG+ +V
Sbjct: 65 AERACKDPNPI-IDGRKANVNL 85
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 46.6 bits (110), Expect = 3e-07
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
+ V L P + L +F G I+ + ++++S A+ A M +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL 78
Query: 578 DG--KIIDVTF 586
G + + V F
Sbjct: 79 GGPDRRLRVDF 89
Score = 39.7 bits (92), Expect = 9e-05
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V L L F G + + K F ++++ A + +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTI-----DHVKGDSFAYIQYESLDAAQAACAK 72
Query: 220 LNNQNLFERRITVRMD 235
+ L +R+D
Sbjct: 73 MRGFPLGGPDRRLRVD 88
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 46.4 bits (109), Expect = 3e-07
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGK----SRGFGTVEFDHPVE 212
N VFV L ++ + ++ + GK+ V I V + +
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 213 AVQSISMLNNQNLFERRITV 232
A+++I +NN + R +
Sbjct: 69 ALRAIQCVNNVVVDGRTLKA 88
Score = 43.7 bits (102), Expect = 2e-06
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFRNCG------------DIKFAEIKGKGDIGLVRFDS 561
++++ V V L + E+ + G +A +G V +
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 65
Query: 562 EWTAKRAIDMMDRTRIDGKIIDV 584
A RAI ++ +DG+ +
Sbjct: 66 SEDALRAIQCVNNVVVDGRTLKA 88
Score = 26.7 bits (58), Expect = 2.9
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 51 HLSTVGDVTYVEILNDDTGK----PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ G + V I N + P SA V + + +A+ ++ GR L
Sbjct: 31 YFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 86
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 46.1 bits (108), Expect = 4e-07
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+F+ NL+ +L+ ++ + + G +R FG V+F+ + +++
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-E 72
Query: 220 LNNQNLFERRITVRMDR 236
L +F I + +
Sbjct: 73 LTGLKVFGNEIKLEKPK 89
Score = 33.0 bits (74), Expect = 0.016
Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 48 QISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
+S + + +++ TG R V+F+S + + KA+ + + G ++ +++
Sbjct: 30 LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.5 bits (107), Expect = 8e-07
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVEN-VEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
VFV N+ Y+ E++L+++F G V + + + GK +G+G E+ A+ ++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMG 257
LN + R + V + E LKS+G G
Sbjct: 70 LNGREFSGRALRVDNAA-------SEKNKEELKSLGTG 100
Score = 45.5 bits (107), Expect = 8e-07
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 513 NIERD--TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI------GLVRFDSEWT 564
++R +V V N+P T ++L+D F G + + + G + + T
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 565 AKRAIDMMDRTRIDGKIIDVTF 586
A A+ ++ G+ + V
Sbjct: 63 ALSAMRNLNGREFSGRALRVDN 84
Score = 38.6 bits (89), Expect = 2e-04
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 71 PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV--EDKGGRRNMGGG 120
P+G E+Q + A+ ++ E GR L + A ++K +++G G
Sbjct: 49 PKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 45.6 bits (107), Expect = 1e-06
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEW-TAKRAIDMMDRTR 576
+L ++L F N G+IK+ + G++ F + A +
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGN 72
Query: 577 IDGKIIDVTFF 587
+ + +VT+
Sbjct: 73 LQLRNKEVTWE 83
Score = 39.8 bits (92), Expect = 9e-05
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVE-AVQSISML 220
F +LD + + L +F G+++ ++ + G + F + A+
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFV-----RGAKEGIILFKEKAKEALGKAKDA 68
Query: 221 NNQNLFERRITVRMDRV 237
NN NL R V + +
Sbjct: 69 NNGNLQLRNKEVTWEVL 85
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 46.1 bits (108), Expect = 1e-06
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 518 TVVVKNLPPTITWQELRD------KFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
++V +P T+ +LR + + E + G V+F S +A++AI
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103
Query: 572 MDRTRIDGKIIDVTF 586
++ I K + V
Sbjct: 104 LNGFNILNKRLKVAL 118
Score = 41.4 bits (96), Expect = 5e-05
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+ + V + VDE +LR++F + + +SRG+G V+F A Q+I
Sbjct: 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101
Query: 218 SMLNNQNLFERRITVRM 234
+ LN N+ +R+ V +
Sbjct: 102 AGLNGFNILNKRLKVAL 118
Score = 32.6 bits (73), Expect = 0.045
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 77 VEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK---GGRRNMGGGGG 122
V+FQS ++A+ ++ F ++L + A G +G G G
Sbjct: 89 VKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 44.1 bits (103), Expect = 1e-06
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG----DIGLVRFDSEWTAKRAIDMMD 573
TV+VKNLP + ++ F++CG I ++ + F A AI
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 61
Query: 574 RTRIDGKIIDVT 585
+ + I V+
Sbjct: 62 KV-VGQNEIIVS 72
Score = 41.8 bits (97), Expect = 8e-06
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V V NL ++ K+ + F+ G + +V++ D K+ F +EF A+ +I+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLKKNFRFARIEFARYDGALAAITK- 59
Query: 221 NNQNLFERRITVRM 234
++ + + I V
Sbjct: 60 THKVVGQNEIIVSH 73
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 45.2 bits (106), Expect = 1e-06
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 160 NKVFVANLDYKV-----DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
+ + + V K +FR K + KS + F +P+ A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAA 60
Query: 215 QSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKS 253
+ L+ + + + + + P KS
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKS 99
Score = 44.0 bits (103), Expect = 2e-06
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 517 DTVVVKNLPPTI-----TWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571
++ + T + FR + + F + +A A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 572 MDRTRIDGKIIDVTF 586
+ +T GK + + F
Sbjct: 66 LHKTEFLGKEMKLYF 80
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 44.9 bits (106), Expect = 1e-06
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 162 VFVANL----DYKVDEKKLRE----VFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
V + N+ D++ D L E + K + L D G +V F P EA
Sbjct: 11 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 70
Query: 214 VQSISMLNNQNLFERRITVRMDR 236
I L+ + R+IT +
Sbjct: 71 DYCIQTLDGRWFGGRQITAQAWD 93
Score = 41.8 bits (98), Expect = 1e-05
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 518 TVVVKNL--PPTI-----TWQELRDKFRNCG-------DIKFAEIKGKGDIGLVRFDSEW 563
V++KN+ P E+R+ R + + G + V F
Sbjct: 10 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDG-VASVSFRDPE 68
Query: 564 TAKRAIDMMDRTRIDGKIIDVTFF 587
A I +D G+ I +
Sbjct: 69 EADYCIQTLDGRWFGGRQITAQAW 92
Score = 35.7 bits (82), Expect = 0.002
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
+ L P G A V F+ P+ + + GR++ +
Sbjct: 40 CSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 44.0 bits (103), Expect = 2e-06
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 160 NKVFVANLDYKV-DEKKLREVF--RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
++ + NL ++ DE LRE F + + N+ + + + F++ A ++
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 217 ISMLNNQNLFERRITVRM 234
+ M N L R I+V +
Sbjct: 65 LQM-NRSLLGNREISVSL 81
Score = 39.7 bits (92), Expect = 6e-05
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 514 IERDTVVVKNLPPTITWQE-LRDKFRNCGDIKFAEIKGKGD-------IGLVRFDSEWTA 565
+E ++++NL + + LR+ F G I+ I + F+++ +A
Sbjct: 2 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 61
Query: 566 KRAIDMMDRTRIDGKIIDVTF 586
+RA+ M+R+ + + I V+
Sbjct: 62 ERALQ-MNRSLLGNREISVSL 81
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 43.4 bits (101), Expect = 2e-06
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID 578
++++ LP +T QE+ D + ++K+ + V + A+ AI+ ++R+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 579 GKIIDVTF 586
+ + V
Sbjct: 60 ERELSVQL 67
Score = 33.7 bits (76), Expect = 0.007
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ + L V +++ ++ + E+ K +G V + +A +I+ +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLS------DYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 222 NQNLFERRITVRM 234
L ER ++V++
Sbjct: 55 QSRLRERELSVQL 67
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.6 bits (102), Expect = 3e-06
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIK--FAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT 575
T+ + N+PP+++ ++L+ F + G + F + + L++ S A +A+ +
Sbjct: 12 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 71
Query: 576 RI-DGKIIDVTF 586
+ + + V+F
Sbjct: 72 DLGENHHLRVSF 83
Score = 35.1 bits (80), Expect = 0.003
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
P + ++N+ V E+ L+ +F G V K R ++ EAVQ+
Sbjct: 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF---KFFQKDRKMALIQMGSVEEAVQA 64
Query: 217 ISMLNNQNLFE-RRITV 232
+ L+N +L E + V
Sbjct: 65 LIDLHNHDLGENHHLRV 81
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.0 bits (103), Expect = 3e-06
Identities = 16/77 (20%), Positives = 31/77 (40%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++++NL +DE++L + + G+V + I D G SRG G + + I
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 220 LNNQNLFERRITVRMDR 236
N + +
Sbjct: 79 FNGKFIKTPPGVSAPTE 95
Score = 41.3 bits (96), Expect = 2e-05
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGD-----IKFAEIKGKGDIGLVRFDS 561
M + + + + NLP ++ QEL + + G I +G R +S
Sbjct: 9 QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 68
Query: 562 EWTAKRAIDMMDRTRIDGKIIDV 584
+ I + I
Sbjct: 69 TEKCEAVIGHFNGKFIKTPPGVS 91
Score = 27.1 bits (59), Expect = 2.5
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 70 KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
RG +S + + + K V
Sbjct: 57 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 44.0 bits (103), Expect = 3e-06
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEW 563
S S + V V+ L ++ +L + G I + + LV F++
Sbjct: 3 SGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENID 62
Query: 564 TAKRAIDMMD--RTRIDGKIIDVTF 586
+AK + I G+ +
Sbjct: 63 SAKECVTFAADVPVYIAGQQAFFNY 87
Score = 35.9 bits (82), Expect = 0.002
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
V V L V E L E G + V + K VEF++ A + ++
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFENIDSAKECVTF 70
Query: 220 LNNQNLFERRITVRMD 235
+ ++ +
Sbjct: 71 AADVPVYIAGQQAFFN 86
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.9 bits (103), Expect = 3e-06
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
F+ NL Y V E+ ++E FR + + +GFG EF+ +++ S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSAL 74
Query: 219 MLNNQNLFERRITVR 233
LN ++L +RI V
Sbjct: 75 SLNEESLGNKRIRVD 89
Score = 42.8 bits (100), Expect = 9e-06
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAK-----RAIDMM 572
T + NLP +T + +++ FR + + ++ + + +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 76
Query: 573 DRTRIDGKIIDVTF 586
+ + K I V
Sbjct: 77 NEESLGNKRIRVDV 90
Score = 30.9 bits (69), Expect = 0.11
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
+ +G EF+ D + A+ ++ +++ + A + + G
Sbjct: 53 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDSGPSSG 104
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.6 bits (102), Expect = 3e-06
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 506 RSMNQSSNIERD----TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS 561
R + S+ + +KNL P +T ++L F + K I+ + G +R +
Sbjct: 4 RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 562 EWTA------KRAIDMMDRTRIDGKIIDVTF 586
T +A+ +++ ++ GKI+ + F
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEF 94
Score = 43.6 bits (102), Expect = 3e-06
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+++ NL +V E+ L +F + + I G+ RG + F + A Q++
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 219 MLNNQNLFERRITVRM 234
++N L+ + + +
Sbjct: 79 LVNGYKLYGKILVIEF 94
Score = 32.1 bits (72), Expect = 0.041
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 12 EQIAHQDFPMFQRIETGAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DT 68
E+I + PMF G P +V + +L + L + + I T
Sbjct: 1 EEI--RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFA--RFQEKKGPPIQFRMMT 56
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G+ RG A + F + ++ +A++ ++ ++ G+ LVI+ K
Sbjct: 57 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 99
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 43.3 bits (101), Expect = 5e-06
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFR------NCGDIKFAEIKGKGDIGLVRFDSEWTAKRA 568
E TV ++NL + L + + + + + +F ++ A++
Sbjct: 7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 66
Query: 569 IDMM------DRTRIDGKIIDVTF 586
+ ++DG+ + V
Sbjct: 67 LAAASLEAEGGGLKLDGRQLKVDL 90
Score = 41.0 bits (95), Expect = 3e-05
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK-SRGFGTVEFDHPVEAVQSIS 218
VF+ NL + +E+ L EV + G ++ V + L D + S+G +F A + ++
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 219 MLNNQN------LFERRITVRM 234
+ + L R++ V +
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDL 90
Score = 27.5 bits (60), Expect = 1.6
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHR------FETKGRKLVIKEAVE 109
+ DT +G A +F + + +K + + GR+L + AV
Sbjct: 43 HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 93
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 43.2 bits (101), Expect = 6e-06
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 518 TVVVKNLPP-TITWQELRDKFRNCGDIKFAEIKGKGD-IGLVRFDSEWTAKRAIDMMDRT 575
++V NL P +T Q L F GD++ +I LV+ A+ A+ ++
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 63
Query: 576 RIDGKIIDVTF 586
++ GK I +T
Sbjct: 64 KLHGKPIRITL 74
Score = 37.8 bits (87), Expect = 5e-04
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 160 NKVFVANLD-YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ + V+NL+ +V + L +F + G V+ V+I + V+ +A ++S
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI----LFNKKENALVQMADGNQAQLAMS 58
Query: 219 MLNNQNLFERRITVRMDR 236
LN L + I + + +
Sbjct: 59 HLNGHKLHGKPIRITLSK 76
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.5 bits (99), Expect = 6e-06
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM--DRT 575
+ ++ LP +T E+ G + + + + +E A ++
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 69
Query: 576 RIDGKIIDVTF 586
+ + I + +
Sbjct: 70 HLRNQPIYIQY 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.3 bits (99), Expect = 9e-06
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI-GLVRFDSEWTAKRAIDMMDRTR 576
V V +T ELR+ F GD+ I V F + A+ +
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GEDLI 64
Query: 577 IDGKIIDVTF 586
I G + ++
Sbjct: 65 IKGISVHISN 74
Score = 40.4 bits (94), Expect = 4e-05
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ VFV + E +LRE F G V +V R F V F A
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV----FIPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 220 LNNQNLFERRITVR 233
+ + + +
Sbjct: 61 -EDLIIKGISVHIS 73
Score = 34.6 bits (79), Expect = 0.004
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 73 GSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
A V F + + + KG + I A G
Sbjct: 43 AFAFVTFADDQIAQSLCGEDLII--KGISVHISNAEPKHNSNSGPSSG 88
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 42.2 bits (98), Expect = 9e-06
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID 578
VVV LPP+ +WQ+L+D R GD+ +A++ G V F + A+ +D T+
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV-VEFVRKEDMTYAVRKLDNTKFR 61
Query: 579 GKIIDVTF 586
+ +
Sbjct: 62 SHEGETAY 69
Score = 39.1 bits (90), Expect = 9e-05
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V V+ L + L++ R D G G VEF + ++
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMR------EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 220 LNNQNLFERRITVRMDRVADRLDGP 244
L+N RV ++DGP
Sbjct: 55 LDNTKFRSHEGETAYIRV--KVDGP 77
Score = 28.3 bits (62), Expect = 0.67
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 77 VEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
VEF + + AV K+ + + + G R+ G
Sbjct: 40 VEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYG 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.2 bits (103), Expect = 1e-05
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENV-EIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
K+F+ L ++ ++ LR F G + + + +SRGFG V + E +++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 220 LNNQNLFERRITVRM 234
++ R
Sbjct: 68 RPHKVDGRVVEPKRA 82
Score = 42.7 bits (99), Expect = 3e-05
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVR------FDSEWTAKRAIDM 571
+ + L T + LR F G + + + R + + A++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 572 MD 573
Sbjct: 68 RP 69
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 41.5 bits (97), Expect = 1e-05
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
+++ V V P + +F G+I + G+ +R+ S+ A++A+
Sbjct: 1 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-K 58
Query: 573 DRTRIDGKII 582
D I+
Sbjct: 59 DGRIFGESIM 68
Score = 33.0 bits (75), Expect = 0.011
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
V V L + F G + + + + + ++A +++S
Sbjct: 5 TWVTVFGFPQASASYILLQ-FAQYGNILKH-----VMSNTGNWMHIRYQSKLQARKALSK 58
Query: 220 LNNQNLFERRITVRMDRVADR 240
F I + + D+
Sbjct: 59 DGRI--FGESIMIGVKPCIDK 77
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.9 bits (98), Expect = 1e-05
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKS---RGFGTVEFDHPVEAVQSISML 220
+ + +Y+ + +R+ G V+++EI DG G VEF + +++ L
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 221 NNQNLFERRITV 232
+ R +
Sbjct: 79 TGRKFANRVVVT 90
Score = 38.4 bits (89), Expect = 3e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 21 MFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQ 80
M E E +++ ++ + S V + ++ G VEF
Sbjct: 12 MVLPEELLDDEEYEEIVEDVR-----DECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 66
Query: 81 SPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
S +KA+ + + R +V K D RR+
Sbjct: 67 SVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRD 102
Score = 37.3 bits (86), Expect = 7e-04
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD--------IGLVRFDSEW 563
N+ ++ + +++RD+ G +K EI D V F S +
Sbjct: 10 MNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 69
Query: 564 TAKRAIDMMDRTRIDGKIIDVTFF 587
++A+ + + +++ +
Sbjct: 70 DCQKAMQGLTGRKFANRVVVTKYC 93
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 41.9 bits (97), Expect = 2e-05
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEW 563
S+ S +S ++ KNLP E+++ F G + + G +V F
Sbjct: 2 SSGSSGRSKT----VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPL 57
Query: 564 TAKRAIDMMDRTRIDGKIIDVTF 586
A++A + ++ + + +
Sbjct: 58 EARKAFRHLAYSKFHHVPLYLEW 80
Score = 34.5 bits (78), Expect = 0.006
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ NL +++E F G + V + VEF P+EA ++
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRV-----LLPEGGITAIVEFLEPLEARKAFRH 65
Query: 220 LNNQNLFERRITV 232
L + +
Sbjct: 66 LAYSKFHHVPLYL 78
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.8 bits (97), Expect = 2e-05
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+ N+ + + + + + EN L + G+ G V+F + +A +S +
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
Query: 220 LNNQNLFERRITVRM 234
+ + L R V +
Sbjct: 70 -HRKKLNGREAFVHV 83
Score = 37.9 bits (87), Expect = 4e-04
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG------LVRFDSEWTAK 566
N + + N+P +IT ++ + A + G LV+F +E A+
Sbjct: 5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR 64
Query: 567 RAIDMMDRTRIDGKIIDV 584
++ + R +++G+ V
Sbjct: 65 KSER-LHRKKLNGREAFV 81
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 40.2 bits (93), Expect = 4e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIK-FAEIKGKGDIGLVRFDSEWTAKRA 568
Q+ + + NLP L F K + + DI V F +E + A
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAA 61
Query: 569 IDMMDRTRID-GKIIDVTF 586
+ + +I + +TF
Sbjct: 62 KEALQGFKITPTHAMKITF 80
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.1 bits (93), Expect = 7e-05
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ V + L Y+ E + F + + DG+ G VEF E +
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIE-IGPDGRVTGEADVEFATH-EDAVAAMA 73
Query: 220 LNNQNLFERRITVRMDRVADR 240
+ N+ R + + ++ A
Sbjct: 74 KDKANMQHRYVELFLNSTAGT 94
Score = 38.2 bits (88), Expect = 3e-04
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG----DIGLVRF 559
S S + + V ++ LP T ++ + F ++ G V F
Sbjct: 3 SGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 62
Query: 560 DSEWTAKRAIDMMDRTRIDGKIIDV 584
+ A A+ D+ + + +++
Sbjct: 63 ATHEDAVAAMA-KDKANMQHRYVEL 86
>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
virus) coat proteins {FMDV (Foot-and-mouth disease
virus), strain bfs, 1860 [TaxId: 12110]}
Length = 289
Score = 31.8 bits (72), Expect = 0.18
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 446 NNVYSNQSAPSTDYSRNASNMYGNSRYGSGG-------NEMDYGGGSGQASIQSGGYGNP 498
NN Y Q S D + G S GS N + S AS G
Sbjct: 9 NNYYMQQYQNSMDTQLGNDAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGA 68
Query: 499 RAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQE 532
++ +++ +E + +N T T Q
Sbjct: 69 LLA---DKKTEETTLLEDRILTTRNGHTTSTTQS 99
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 28.1 bits (63), Expect = 0.73
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI 543
VV++ LPPT+T ++L++ + +
Sbjct: 4 VVIRRLPPTLTKEQLQEHLQPMPEH 28
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 27.4 bits (61), Expect = 1.1
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 510 QSSNIERDTVVVK----------NLPPTITWQELRDKFRNCGDIKFAEIKGKGDIG-LVR 558
SS T +K L T++ELR K D +++ K G
Sbjct: 4 GSSTSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGEE 63
Query: 559 FDSEWTAKRAIDMMDR 574
++ I +
Sbjct: 64 IKTDSQVSNIIQAKLK 79
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 64 LNDDTGKPRGSAIVEF-----QSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
L + P +AI+EF ++ + K +++ + KE +
Sbjct: 15 LTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHV-IFKEGNLNG 66
>gi|93140497|sp|P0C1A2.1|PELA_ERWCH(40-393:393) RecName:
Full=Pectate lyase A; Flags: Precursor
gi|148449|gb|AAA24843.1| pectate lyase A, precursor (EC
4.2.2.2) gi|47168462|pdb|1OOC|A Chain A, Mutations In
The T1.5 Loop Of Pectate Lyase A
gi|47168463|pdb|1OOC|B Chain B, Mutations In The T1.5
Loop Of Pectate Lyase A gi|47168541|pdb|1PE9|A Chain
A, Mutations In The T1.5 Loop Of Pectate Lyase A
gi|47168542|pdb|1PE9|B Chain B, Mutations In The T1.5
Loop Of Pectate Lyase A gi|21730393|pdb|1JRG|A Chain
A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi gi|21730394|pdb|1JRG|B Chain B,
Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi gi|21730403|pdb|1JTA|A Chain A,
Crystal Structure Of Pectate Lyase A (C2 Form) E=1e-123
s/c=1.25 id=65% cov=97%
Length = 350
Score = 27.8 bits (61), Expect = 4.4
Identities = 11/81 (13%), Positives = 22/81 (27%)
Query: 446 NNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSN 505
NNV+ + + + + + S GN S + + N D+
Sbjct: 243 NNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNG 302
Query: 506 RSMNQSSNIERDTVVVKNLPP 526
+N S+
Sbjct: 303 SVLNGSAVDLSGCGFSAYTSK 323
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 104
Score = 25.9 bits (57), Expect = 5.7
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 126 DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF 180
D +L K T G++P F + I + A+L ++ E K V+
Sbjct: 11 DWCVVLNGAVIKRLGTKGINPFFQ-----SEEEIQQKLTASLLPQLPEGKFNAVY 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,028,577
Number of extensions: 93219
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 232
Length of query: 587
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 497
Effective length of database: 1,171,896
Effective search space: 582432312
Effective search space used: 582432312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.7 bits)