BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15340
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1
SV=1
Length = 125
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
MIPK++WSAF +A L I +P+ ++ YE++ EFL+ +HH LLEVEV+EG L+CPE
Sbjct: 45 MIPKVEWSAFLEAADNL--RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPE 102
Query: 61 SGRKFPISSGIPNMLLKEDE 80
SGR FPIS GIPNMLL E+E
Sbjct: 103 SGRMFPISRGIPNMLLSEEE 122
>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2
SV=1
Length = 125
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
MIPK++W+A +A L AE+ P++ + YE D FL+K+HH LLEV+V+EG L+CPE
Sbjct: 45 MIPKVEWAALVQAADTLNLAEV--PKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPE 102
Query: 61 SGRKFPISSGIPNMLLKEDE 80
SGR FPIS GIPNMLL ++E
Sbjct: 103 SGRLFPISRGIPNMLLNDEE 122
>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2
SV=1
Length = 125
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
MIPK++W+A +A L I +P++ I YE + EFL+K+HH LLEVEV+EG L+CPE
Sbjct: 45 MIPKVEWAALLEAADHL--HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPE 102
Query: 61 SGRKFPISSGIPNMLLKEDE 80
SGR FPIS GIPNMLL ++E
Sbjct: 103 SGRVFPISRGIPNMLLSDEE 122
>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190
PE=2 SV=1
Length = 124
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
M K+DW A + E+ + E D FL+K HHALLE+ + EG L CPE
Sbjct: 44 MFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPE 103
Query: 61 SGRKFPISSGIPNMLLKEDEI 81
+GRKF +S GIPNMLL EDE+
Sbjct: 104 TGRKFSVSKGIPNMLLHEDEV 124
>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1
Length = 124
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 1 MIPKLDWSAFYKATLMLGDAEIS--IPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLEC 58
++PKLDWSA Y A + AE++ IP ++ ++ L+K+HH L E++V+EG LEC
Sbjct: 45 ILPKLDWSAVYGAAQV---AELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLEC 101
Query: 59 PESGRKFPISSGIPNMLLKEDEI 81
PE+GR FPIS GIPNMLL EDE+
Sbjct: 102 PETGRVFPISDGIPNMLLNEDEV 124
>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489
PE=3 SV=1
Length = 128
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)
Query: 3 PKLDWSAFYKATLMLGDAEISIPEKL---IDSYE---KDSEFLKKVHHALLEVEVVEGDL 56
PKLDW LG AEISI + +D+ + +D EFLK +H+ L ++V+ G L
Sbjct: 47 PKLDW---------LGIAEISIKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSL 97
Query: 57 ECPESGRKFPISSGIPNMLLKEDEI 81
CP R +PI GIPNMLL+EDEI
Sbjct: 98 TCPNCQRVYPIDKGIPNMLLREDEI 122
>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm112 PE=3 SV=1
Length = 126
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEK---LIDSYEKDSEFLKKVHHALLEVEVVEGDLE 57
++P++DW+A K T LG+ S+P++ L+D + D LK +H+ LLE E+ EG +
Sbjct: 47 IMPRIDWNALLKTTRQLGN--YSLPDEKPDLVD--DSDEVLLKSLHNVLLETEITEGKMV 102
Query: 58 CPESGRKFPISSGIPNMLLKEDEI 81
C G +PI GIPNMLL E EI
Sbjct: 103 CGNCGHVYPIFEGIPNMLLSESEI 126
>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270
PE=2 SV=1
Length = 124
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDS--YEKDSEFLKKVHHALLEVEVVEGDLEC 58
M K++W A + +G AE+ PE+ D+ + D FLKK+HHALLE+ + EG L C
Sbjct: 44 MFAKIEWKALVEGARSMGYAEL--PEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVC 101
Query: 59 PESGRKFPISSGIPNMLLKEDEI 81
PE+GRKFP++ GIPNMLL EDE+
Sbjct: 102 PETGRKFPVNKGIPNMLLHEDEV 124
>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1
Length = 125
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSY-EKDSEFLKKVHHALLEVEVVEGDLECP 59
M+ ++ + A A + ++ IP + + + E E L+ HH L+ ++V++G+L CP
Sbjct: 45 MLDRIQYEALIVAAAAVNQSD-RIPREKPEKWDELTDEQLRVFHHLLMNIDVIDGELICP 103
Query: 60 ESGRKFPISSGIPNML 75
E+ FPI GIPNML
Sbjct: 104 ETKTVFPIRDGIPNML 119
>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=trm-112 PE=3 SV=1
Length = 127
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
++P++DW+A + LG + + + D LK++H L+E +++EG L C
Sbjct: 47 VLPRIDWAALRTTSTELGFPTLPEQPPSPEDLQSDEALLKELHELLMETQMMEGKLVCGH 106
Query: 61 SGRKFPISSGIPNMLL 76
G ++ + +G+ N LL
Sbjct: 107 CGHEYAVKNGVANFLL 122
>sp|P53738|TR112_YEAST Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM112 PE=1
SV=1
Length = 135
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MIPKLDWSAFYKATLMLGDAEI-----SIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGD 55
++ ++DW A LG+ + S P + + + D L +H LL+ + EG+
Sbjct: 50 IVDRVDWPAVLTVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGE 109
Query: 56 LECPESGRKFPISSGIPNMLL 76
++C G + I +GIPN+LL
Sbjct: 110 MKCRNCGHIYYIKNGIPNLLL 130
>sp|Q2SIN3|Y2705_HAHCH UPF0434 protein HCH_02705 OS=Hahella chejuensis (strain KCTC
2396) GN=HCH_02705 PE=3 SV=1
Length = 60
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 45 ALLEVEVVEGDLE---------CPESGRKFPISSGIPNMLLKE 78
A+L V +GDL+ C G FPI GIP ML KE
Sbjct: 7 AILACPVCKGDLKYDREKQELVCKNDGMAFPIRDGIPVMLEKE 49
>sp|A1B4L5|Y2369_PARDP UPF0434 protein Pden_2369 OS=Paracoccus denitrificans (strain Pd
1222) GN=Pden_2369 PE=3 SV=1
Length = 63
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
V HA L + +L +G FPI GIP MLL E
Sbjct: 21 VTHATLRYDAEAQELISEAAGLAFPIRGGIPIMLLNE 57
>sp|Q4KWZ7|REV1_CHICK DNA repair protein REV1 OS=Gallus gallus GN=REV1 PE=2 SV=1
Length = 1255
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 3 PKLDWSAFYKATLMLGDAEISIPEKL 28
P+L+W +Y+ L+ G AEI IP+KL
Sbjct: 467 PQLEWQ-YYQNKLLNGKAEIRIPDKL 491
>sp|Q20390|PPT1_CAEEL Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1
PE=2 SV=2
Length = 298
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 1 MIPK-LDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHA-LLEVEVVEGD-LE 57
++PK W FYK GD + +P D Y++D LKK+H + + V+GD L+
Sbjct: 227 VVPKDSSWFGFYKD----GDIDTILPMNETDLYKEDRIGLKKLHESGRIHFMDVDGDHLQ 282
Query: 58 CPES 61
P S
Sbjct: 283 IPRS 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,302,709
Number of Sequences: 539616
Number of extensions: 1167179
Number of successful extensions: 2766
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2745
Number of HSP's gapped (non-prelim): 20
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)