RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15340
(81 letters)
>2j6a_A Protein TRM112; translation termination, methyltransferase,
transferase, ERF1, nuclear protein, protein methylation;
1.7A {Saccharomyces cerevisiae}
Length = 141
Score = 99.4 bits (247), Expect = 7e-29
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1 MIPKLDWSAFYKATLMLGDAEI-----SIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGD 55
++ ++DW A LG+ + S P + + + D L +H LL+ + EG+
Sbjct: 50 IVDRVDWPAVLTVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGE 109
Query: 56 LECPESGRKFPISSGIPNMLLKEDEI 81
++C G + I +GIPN+LL +
Sbjct: 110 MKCRNCGHIYYIKNGIPNLLLPPHLV 135
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics
consortium, beta, PSI-2, protein structure initiative;
NMR {Bordetella bronchiseptica RB50}
Length = 70
Score = 34.5 bits (80), Expect = 3e-04
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
LE + + +L C FP+ G+P ML E
Sbjct: 15 KGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAE 49
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
PSI-2, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: b.171.1.1
Length = 67
Score = 34.1 bits (79), Expect = 4e-04
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
L E L + I GIP +L+ E
Sbjct: 17 KGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
beta, structural genomics, protein structure
initiative; NMR {Streptomyces coelicolor}
Length = 56
Score = 33.6 bits (78), Expect = 5e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
HA LE E + G +P+ GIP +L+ E
Sbjct: 17 HAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDE 51
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI,
structure initiative, northeast structural genomics
consort NESG; NMR {Neisseria meningitidis}
Length = 68
Score = 34.1 bits (79), Expect = 5e-04
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
LE + +L ++ +PI GIP ML E
Sbjct: 15 KGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENE 49
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes
structural genomics, PSI-2, protein structure
initiative; 1.90A {Chromobacterium violaceum} SCOP:
b.171.1.1
Length = 68
Score = 33.4 bits (77), Expect = 8e-04
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
+ L + + +L C FPI GIP ML E
Sbjct: 13 LCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESE 49
>2pk7_A Uncharacterized protein; NESG, PLR1, putative
tetraacyldisaccharide-1-P 4-kinase, Q4K structural
genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP:
b.171.1.1
Length = 69
Score = 33.4 bits (77), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
L++ + +L +G +PI GIP ML E
Sbjct: 15 KGPLKLSADKTELISKGAGLAYPIRDGIPVMLESE 49
>3qrz_A Abscisic acid receptor PYL5; crystal, hormone receptor; 2.60A
{Arabidopsis thaliana}
Length = 223
Score = 31.0 bits (69), Expect = 0.022
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 21 EISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
I P + + + + + K + + + +V+GD R+ + SG+P + E
Sbjct: 85 MIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVGDLREVMVVSGLPAVSSTE 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.17
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 22 IS-IPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLEC--PESGRK-------FPISSGI 71
+S I E + D + K V+ L ++E L P RK FP S+ I
Sbjct: 330 LSIIAESIRDGLAT-WDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 72 PNMLL 76
P +LL
Sbjct: 388 PTILL 392
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 125
Score = 26.9 bits (59), Expect = 0.56
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 24 IPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGI 71
+ E+ I S+ ++ +K+ L ++VVEG L C G +PI I
Sbjct: 68 LSEQDISSFVENPGDDEKIKEFLFGIDVVEGSLRCDMCGLIYPIKGSI 115
>2k5r_A Uncharacterized protein XF2673; solution structure, structural
genomics, PSI-2, protein structure initiative; NMR
{Xylella fastidiosa TEMECULA1}
Length = 97
Score = 26.6 bits (58), Expect = 0.64
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 50 EVVEGDLECPESGRKFPISSGIPNMLLKE 78
+ + L + + F I IP +L +E
Sbjct: 48 QSLHEALITRDRKQVFRIEDSIPVLLPEE 76
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 26.1 bits (58), Expect = 1.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 30 DSYEKDSEFLKKVHHALLE 48
D+YE+D+E ++ E
Sbjct: 163 DNYERDAELQQRTGAVYAE 181
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor,
A sensor, drought tolerance, plant development; HET:
A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A*
3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Length = 211
Score = 24.7 bits (53), Expect = 4.2
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 21 EISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
I P +L+ S + + + H + V + R + SG+P E
Sbjct: 57 RIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTE 114
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 24.8 bits (53), Expect = 4.5
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 10 FYKATLMLGDAEISIPEKLIDS-----YEKDSEFLKKVHHALLEVE 50
TL D++ + L+ + + +KV L +
Sbjct: 519 CPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQ 564
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 24.4 bits (54), Expect = 4.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 17 LGDAEISIPEKL---IDSYEKDSEFLKKV 42
+EI P K+ + + E+D+E LK
Sbjct: 361 AAPSEI--PGKMEDALAALEQDAECLKAG 387
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 24.2 bits (53), Expect = 5.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 28 LIDSYEKDSEFLKKVHHAL-LE-VEVVEGDLECPESGRKFPI 67
L+DS K FL++V H L LE +E V+ +E S F
Sbjct: 94 LLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDG 135
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 24.1 bits (52), Expect = 5.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 19 DAEISIPEKLIDSYEKDSEFLK 40
A +S+ ++ +D + D E+ K
Sbjct: 424 CAALSLRDEDMDRLKADKEWTK 445
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding
protein; NMR {Helicobacter pylori}
Length = 119
Score = 24.0 bits (52), Expect = 5.9
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 12 KATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISS 69
+ + +G+ + ++E E A+L++ + +LEC + F ++
Sbjct: 30 RVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNA 87
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28;
AT1G70830, BET V1-like, structural genomics, protein
structure initiative; NMR {Arabidopsis thaliana}
Length = 166
Score = 23.8 bits (51), Expect = 7.2
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 19 DAEISIP-EKLIDSYEKDSEFLKKVH-HALLEVEVVEGDLECPESGRKFPISSGIPNMLL 76
D EI +K + + K + ++ EGD S + +
Sbjct: 22 DVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVA 81
Query: 77 KE 78
KE
Sbjct: 82 KE 83
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical
protein, TRI-lobal structure, structural genomics, PSI;
2.80A {Mycoplasma pneumoniae}
Length = 218
Score = 24.0 bits (51), Expect = 7.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 25 PEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPN 73
+ + Y D + + V ALLE +V + F ++ +PN
Sbjct: 172 TNQSVREYLDDKQKFEGVRTALLEERMVLETIN--HFKFHFNLTGQLPN 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.393
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,289,689
Number of extensions: 62915
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 29
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)