RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15340
         (81 letters)



>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
          {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 59

 Score = 35.4 bits (82), Expect = 4e-05
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
               L     E  L        + I  GIP +L+ E
Sbjct: 15 KDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51


>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
          {Chromobacterium violaceum [TaxId: 536]}
          Length = 59

 Score = 32.7 bits (75), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
          +    L  +  + +L C      FPI  GIP ML  E
Sbjct: 12 LCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESE 48


>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
          {Pseudomonas fluorescens [TaxId: 294]}
          Length = 59

 Score = 31.5 bits (72), Expect = 0.002
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
             L++   + +L    +G  +PI  GIP ML  E
Sbjct: 13 KGPLKLSADKTELISKGAGLAYPIRDGIPVMLESE 47


>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
          {Bacillus subtilis [TaxId: 1423]}
          Length = 329

 Score = 24.0 bits (51), Expect = 2.8
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNM 74
          VH +L ++ + + D+              I  M
Sbjct: 11 VHVSLPDLALEQVDISTKIGELSSSSPIFINAM 43


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 9/40 (22%)

Query: 20  AEISIPEKLID--SYEKDS-------EFLKKVHHALLEVE 50
            E  + E  ID  + E           +L++  H  L ++
Sbjct: 687 VEEGLGEDFIDKIADETIGTTVDEILPYLEEKGHPALTMD 726


>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate
          delta-isomerase {Thermus thermophilus [TaxId: 274]}
          Length = 310

 Score = 23.7 bits (50), Expect = 3.9
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNM 74
           + AL  + + E DL  P  G+       I  M
Sbjct: 12 RYQALAGLALSEVDLTTPFLGKTLKAPFLIGAM 44


>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 208

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 30  DSYEKDSEFLKKVHHALLE 48
           D+YE+D+E  ++      E
Sbjct: 163 DNYERDAELQQRTGAVYAE 181


>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain
          {Human papillomavirus type 18 [TaxId: 333761]}
          Length = 194

 Score = 22.7 bits (49), Expect = 6.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 26 EKLIDSYEKDSEFLK 40
          +K+ID YE DS+ + 
Sbjct: 18 DKIIDHYENDSKDID 32


>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain
          {Human papillomavirus type 11 [TaxId: 10580]}
          Length = 196

 Score = 22.7 bits (49), Expect = 6.9
 Identities = 4/15 (26%), Positives = 11/15 (73%)

Query: 26 EKLIDSYEKDSEFLK 40
          ++L++ YE++S  + 
Sbjct: 13 DQLLELYEENSIDIH 27


>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
          {Human papillomavirus type 16 [TaxId: 333760]}
          Length = 200

 Score = 22.7 bits (49), Expect = 7.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 26 EKLIDSYEKDSEFLK 40
          +K++  YE DS  L+
Sbjct: 13 DKILTHYENDSTDLR 27


>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C,
          EpsC {Vibrio cholerae [TaxId: 666]}
          Length = 87

 Score = 22.2 bits (47), Expect = 8.4
 Identities = 4/37 (10%), Positives = 12/37 (32%)

Query: 8  SAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHH 44
            F    L  GD  +++    +      +   + ++ 
Sbjct: 30 VLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNE 66


>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 137

 Score = 22.1 bits (47), Expect = 8.8
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 13  ATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECP 59
             L   +++I+   ++ +  E    +L            +EGDL   
Sbjct: 61  ENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFN 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,842
Number of extensions: 12489
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 16
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)