BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15345
         (330 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 232/319 (72%), Gaps = 24/319 (7%)

Query: 12  NAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPK 71
            A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI  +++YKGI+D  VRIPK
Sbjct: 3   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62

Query: 72  EQGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFXXXXXXXXXX 131
           EQG LSFWRGN+ANVIRYFPTQALNFAFKD YK  FL G+D+++QFWRYF          
Sbjct: 63  EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 122

Query: 132 XXTSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQG 191
             TSL FVYPLDFARTRLAAD+GK A  R+++G+ +C+ K FKSDGL G+Y+GF VSVQG
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182

Query: 192 IIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQV 251
           IIIYRAAYFG +DTAKGMLPD KN +  +SWMIAQ                         
Sbjct: 183 IIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV----------------------- 219

Query: 252 GTTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIF 311
            T VAG++SYP DTVRRR+MMQSG       Y  T+ CW+ IA+ EG  AFFKG+ SN+ 
Sbjct: 220 -TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 278

Query: 312 RGTGGALVLAMYEEIQKYI 330
           RG GGA VL +Y+EI+K++
Sbjct: 279 RGMGGAFVLVLYDEIKKFV 297


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 129/315 (40%), Gaps = 37/315 (11%)

Query: 20  FAAGGVSAAVAKTATAPIERVKLILQVQHINK---QIPEDQRYKGIMDVFVRIPKEQGVL 76
           F   G +A +A   T P++  K+ LQ+Q  ++   +     +Y+G++   + + + +G  
Sbjct: 5   FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64

Query: 77  SFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFXXXXXXXXXXXXTSL 136
           S + G +A + R     ++     D+ K ++ KG +      R               ++
Sbjct: 65  SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGAL-----AV 119

Query: 137 LFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQGIIIYR 196
               P D  + R  A   ++   R+Y    +      + +G+ G+++G   +V    I  
Sbjct: 120 AVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178

Query: 197 AAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQVGTTVA 256
            A    +D  K  L  +                   ++ D    +F  S   A   TTV 
Sbjct: 179 CAELVTYDLIKDTLLKAN------------------LMTDDLPCHF-TSAFGAGFCTTV- 218

Query: 257 GILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFR-GTG 315
             ++ P+D V+ R M  S L      Y +  HC  T+ ++EG  AF+KG + +  R G+ 
Sbjct: 219 --IASPVDVVKTRYM-NSALG----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271

Query: 316 GALVLAMYEEIQKYI 330
             ++   YE++++ +
Sbjct: 272 NVVMFVTYEQLKRAL 286


>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
 pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
 pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
 pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
          Length = 246

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 184 GFGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFF 243
           GF VS+Q I+    A F      +G  P  + ++F     + Q+ T   + P + N    
Sbjct: 169 GFAVSLQVILSNPKAVF----KRRGSQPGMQESDF-----LKQITTVEELEPKANNCTKV 219

Query: 244 MSWMIAQVGTTVAGILSYPLDTVR 267
           + W        +A    Y LDTV+
Sbjct: 220 LVWHTRTEKVNLANEPKYHLDTVK 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,329,342
Number of Sequences: 62578
Number of extensions: 363844
Number of successful extensions: 862
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 5
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)