Query psy15345
Match_columns 330
No_of_seqs 159 out of 1998
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 18:34:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.6E-60 5.5E-65 418.2 27.4 295 12-330 3-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6E-57 2E-61 396.4 23.2 280 18-330 3-286 (303)
3 1okc_A ADP, ATP carrier protei 100.0 1.5E-36 5E-41 265.9 17.2 192 120-330 6-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2E-35 6.9E-40 259.3 16.7 188 14-213 102-289 (303)
5 3vjj_A P9-1; 3.00A {Rice black 35.6 16 0.00054 30.1 1.8 36 254-299 273-308 (368)
6 3vjj_A P9-1; 3.00A {Rice black 15.8 1.6E+02 0.0054 24.4 4.0 36 133-178 273-308 (368)
7 2acm_A Mucin-1; auto-catalytic 15.1 53 0.0018 20.0 0.8 20 60-79 40-59 (66)
8 2a3d_A Protein (de novo three- 14.3 1.1E+02 0.0037 18.3 2.0 17 35-51 9-25 (73)
9 3tgu_G UQCRQ, mitochondrial ub 12.9 1.8E+02 0.0061 19.0 3.0 40 73-112 32-71 (81)
10 3f2e_A SIRV coat protein; four 11.4 99 0.0034 19.9 1.4 33 160-192 6-42 (100)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.6e-60 Score=418.21 Aligned_cols=295 Identities=69% Similarity=1.184 Sum_probs=252.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhccccCCCCCCCCcCcHHHHHhHhhcccccccccccchhhHhhhch
Q psy15345 12 NAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPKEQGVLSFWRGNMANVIRYFP 91 (330)
Q Consensus 12 ~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~ 91 (330)
+..+.+..+++|++|++++.+++||||++|+|+|++...........|.+.++++++++++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 45678899999999999999999999999999999864332223456899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhHHHHHHHHHHhhhhccHHHHHHHHhhccCCCCCCCCCCChHHHHHH
Q psy15345 92 TQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMK 171 (330)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~ 171 (330)
..+++|.+||.+++.+....+...+........+++|++||+++.++++|+|+||+|+|++.........|+++++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHH
Confidence 99999999999999654433322222334566789999999999999999999999999986443345678999999999
Q ss_pred HHHhhcccccccchhhhhHHHHHHHHHHHHhHHhhhhcCCCCCCchhhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q psy15345 172 TFKSDGLVGVYRGFGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQV 251 (330)
Q Consensus 172 i~~~~G~~glyrG~~~~ll~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
++++||++|||||+.+++++.+|+++++|.+||.+++.+.+.. +.+....+++|++
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~------------------------~~~~~~~~~~g~~ 218 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK------------------------NVHIIVSWMIAQT 218 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG------------------------CSCHHHHHHHHHH
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC------------------------CccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999775321 1245678899999
Q ss_pred HHHhHhcccccHHHHHHHHhhccCCCCcccccCChHHHHHHHHHhhchhhhhccccchhcccccchhHHHHHHHHHhhC
Q psy15345 252 GTTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFRGTGGALVLAMYEEIQKYI 330 (330)
Q Consensus 252 ag~~~~~~t~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~l~~G~~~~~~~~~~~~i~~~~ye~~~~~~ 330 (330)
+|++++++++|+||||+|||++...+.....|.++++|+++|+++||++|||||+.|+++|.++++++|.+||.+++++
T Consensus 219 ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 219 VTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 9999999999999999999998654444567999999999999999999999999999999777899999999998864
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6e-57 Score=396.36 Aligned_cols=280 Identities=21% Similarity=0.414 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHhhccccCCC---CCCCCcCcHHHHHhHhhcccccccccccchhhHhhhchhhh
Q psy15345 18 KDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQI---PEDQRYKGIMDVFVRIPKEQGVLSFWRGNMANVIRYFPTQA 94 (330)
Q Consensus 18 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~---~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~ 94 (330)
..+++|++|++++.+++||||++|+|+|++...... .....|.+.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642210 11346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHHhHHHHHHHHHHhhhhccHHHHHHHHhhccCCCCCCCCCCChHHHHHHHHH
Q psy15345 95 LNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFK 174 (330)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~ 174 (330)
++|.+|+.+++.+.+..+. ......+++|++||+++.++++|+|++|+|+|++.... ....|+++++++++|++
T Consensus 83 i~f~~ye~~k~~~~~~~~~-----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~i~~ 156 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH-----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG-GGRRYQSTVEAYKTIAR 156 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS-----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-CSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC-----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-CCCCCCCHHHHHHHHHH
Confidence 9999999999998654221 22456689999999999999999999999999986431 34578999999999999
Q ss_pred hhcccccccchhhhhHHHHHHHHHHHHhHHhhhhcCCCCCCchhhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHH
Q psy15345 175 SDGLVGVYRGFGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQVGTT 254 (330)
Q Consensus 175 ~~G~~glyrG~~~~ll~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~ 254 (330)
+||++|||||+.+++++.+++++++|.+||.+++.+.+.... ..+....+++|++||+
T Consensus 157 ~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~----------------------~~~~~~~~~~g~~ag~ 214 (303)
T 2lck_A 157 EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM----------------------TDDLPCHFTSAFGAGF 214 (303)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC----------------------CSCHHHHHHHHHHHHH
T ss_pred hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------------------CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754321 2345678999999999
Q ss_pred hHhcccccHHHHHHHHhhccCCCCcccccCChHHHHHHHHHhhchhhhhccccchhcc-cccchhHHHHHHHHHhhC
Q psy15345 255 VAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFR-GTGGALVLAMYEEIQKYI 330 (330)
Q Consensus 255 ~~~~~t~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~l~~G~~~~~~~-~~~~~i~~~~ye~~~~~~ 330 (330)
+++++++|+||||+|||.+. ...|.++++|+++|+++||++|||||+.|+++| .+.++++|.+||.+++++
T Consensus 215 ~~~~~~~P~dvvktrlq~~~-----~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l 286 (303)
T 2lck_A 215 CTTVIASPVDVVKTRYMNSA-----LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-----SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCHHHHHHHHHHhcc-----ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999975 236899999999999999999999999999999 678999999999999764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-36 Score=265.94 Aligned_cols=192 Identities=21% Similarity=0.338 Sum_probs=163.5
Q ss_pred HHHHHhHHHHHHHHHHhhhhccHHHHHHHHhhccCCC--CCCCCCCChHHHHHHHHHhhcccccccchhhhhHHHHHHHH
Q psy15345 120 YFAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKS--ATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQGIIIYRA 197 (330)
Q Consensus 120 ~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~--~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~ll~~~~~~~ 197 (330)
+....+++|++||+++.++++|+|++|+|+|++.... .....|+++++++++++++||++|||||+.+++++.++.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 3456789999999999999999999999999985321 12357899999999999999999999999999999999999
Q ss_pred HHHHhHHhhhhcC-CCCCCchhhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHHhHhcccccHHHHHHHHhhccCC
Q psy15345 198 AYFGFFDTAKGML-PDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQVGTTVAGILSYPLDTVRRRLMMQSGL 276 (330)
Q Consensus 198 ~~~~~ye~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~t~P~dviktr~q~~~~~ 276 (330)
++|.+||.+++.+ .....+ ..........+++|++||++++++++|+|+||+|||++...
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~-------------------~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~ 146 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRH-------------------KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 146 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHhccccCcc-------------------cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC
Confidence 9999999999853 322111 01112456788999999999999999999999999998644
Q ss_pred CCcccccCChHHHHHHHHHhhchhhhhccccchhcc-cccchhHHHHHHHHHhhC
Q psy15345 277 PVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFR-GTGGALVLAMYEEIQKYI 330 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~~eG~~~l~~G~~~~~~~-~~~~~i~~~~ye~~~~~~ 330 (330)
......|.++++++++|+++||++|||||+.++++| .+..++.|.+||.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 147 GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567899999999999999999999999999999 678999999999998754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2e-35 Score=259.28 Aligned_cols=188 Identities=22% Similarity=0.365 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhccccCCCCCCCCcCcHHHHHhHhhcccccccccccchhhHhhhchhh
Q psy15345 14 VEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPKEQGVLSFWRGNMANVIRYFPTQ 93 (330)
Q Consensus 14 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~ 93 (330)
.+....+++|++|++++.++++|+|++|+|+|++... .....|.+.++++++++++||++|||||+.+++++.++..
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 178 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHH
Confidence 4567899999999999999999999999999998642 1234689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhHHHHHHHHHHhhhhccHHHHHHHHhhccCCCCCCCCCCChHHHHHHHH
Q psy15345 94 ALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTF 173 (330)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~ 173 (330)
+++|.+||.+++.+.+......+ ....+++|++||+++.++++|+|+||+|+|.+. ...|+++++++++++
T Consensus 179 ~i~f~~ye~~k~~l~~~~~~~~~----~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~-----~~~y~~~~~~~~~i~ 249 (303)
T 2lck_A 179 CAELVTYDLIKDTLLKANLMTDD----LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA-----LGQYHSAGHCALTML 249 (303)
T ss_dssp HHHHHHHHHHHHTTTTTTSCCSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----SSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc-----ccccCCHHHHHHHHH
Confidence 99999999999988654322222 345689999999999999999999999999974 236899999999999
Q ss_pred HhhcccccccchhhhhHHHHHHHHHHHHhHHhhhhcCCCC
Q psy15345 174 KSDGLVGVYRGFGVSVQGIIIYRAAYFGFFDTAKGMLPDS 213 (330)
Q Consensus 174 ~~~G~~glyrG~~~~ll~~~~~~~~~~~~ye~~~~~~~~~ 213 (330)
++||++|||||+.|+++|.+|..+++|.+||.+++.+.+.
T Consensus 250 ~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 250 RKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988653
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=35.58 E-value=16 Score=30.12 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.4
Q ss_pred HhHhcccccHHHHHHHHhhccCCCCcccccCChHHHHHHHHHhhch
Q psy15345 254 TVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGM 299 (330)
Q Consensus 254 ~~~~~~t~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 299 (330)
.++++=-||||.+|-.++.- -+....+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl----------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL----------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC----------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh----------ccChHHHHHHHHhcCc
Confidence 45667889999997766542 4556789999999985
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=15.81 E-value=1.6e+02 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=27.2
Q ss_pred HHHhhhhccHHHHHHHHhhccCCCCCCCCCCChHHHHHHHHHhhcc
Q psy15345 133 ATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGL 178 (330)
Q Consensus 133 ~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~~G~ 178 (330)
.++.+=-+|||++|-.+++.. ++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli----------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI----------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC----------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc----------cChHHHHHHHHhcCc
Confidence 456677899999998888653 344778888888873
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.11 E-value=53 Score=20.02 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=16.5
Q ss_pred CcHHHHHhHhhccccccccc
Q psy15345 60 KGIMDVFVRIPKEQGVLSFW 79 (330)
Q Consensus 60 ~~~~~~~~~i~~~~G~~~ly 79 (330)
++....+..||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45678888999999998885
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=14.29 E-value=1.1e+02 Score=18.28 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=12.2
Q ss_pred chhHHHHHHHhhccccC
Q psy15345 35 APIERVKLILQVQHINK 51 (330)
Q Consensus 35 ~Pld~ik~~~q~~~~~~ 51 (330)
+-|..||+|+|.-+.+.
T Consensus 9 qrlaaiktrlqalggse 25 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGSE 25 (73)
T ss_dssp HHHHHHHHHHHHCSSGG
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 34677999999876443
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.93 E-value=1.8e+02 Score=19.04 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=29.6
Q ss_pred cccccccccchhhHhhhchhhhHHHHHHHHHHHHHhcCCC
Q psy15345 73 QGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGID 112 (330)
Q Consensus 73 ~G~~~lyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (330)
.|+.-.+|-+...++..+|..++.+.+|++.++.......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555566667778888888888999999999887654433
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.43 E-value=99 Score=19.88 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=23.3
Q ss_pred CCCCChHHHHHHHHHhhcc----cccccchhhhhHHH
Q psy15345 160 RQYSGMADCVMKTFKSDGL----VGVYRGFGVSVQGI 192 (330)
Q Consensus 160 ~~~~~~~~~~~~i~~~~G~----~glyrG~~~~ll~~ 192 (330)
+++.++-+-+..++.+-|+ |.+|.|++..+.|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 4677778888888888887 45677887776654
Done!