RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15345
(330 letters)
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 388 bits (999), Expect = e-136
Identities = 166/327 (50%), Positives = 215/327 (65%), Gaps = 31/327 (9%)
Query: 7 KKNFSNAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQ--RYKGIMD 64
+N F DF GG+SAA++KTA APIERVK+++Q Q +I + RY GI++
Sbjct: 1 MDKKTN---FATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVN 57
Query: 65 VFVRIPKEQGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGN 124
F R+ KEQGVLS WRGN ANVIRYFPTQA NFAFKD +KN F K ++ FW++F N
Sbjct: 58 CFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPK-YNQKTDFWKFFGVN 116
Query: 125 LASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRG 184
+ SGG AGA+SLL VYPLDFARTRLA+D+GK DR+++G+ DC+MK K G + +Y+G
Sbjct: 117 ILSGGLAGASSLLIVYPLDFARTRLASDIGKGG-DREFTGLFDCLMKISKQTGFLSLYQG 175
Query: 185 FGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFM 244
FGVSVQGII+YR AYFG +D+AK +L + KNTN
Sbjct: 176 FGVSVQGIIVYRGAYFGLYDSAKALL-----------------------FGNDKNTNILY 212
Query: 245 SWMIAQVGTTVAGILSYPLDTVRRRLMMQSGLPVEKRT-YKNTIHCWKTIAQQEGMTAFF 303
W +AQ T +AG++SYP DTVRRR+MM SG + Y T+ CWK I + EG+ FF
Sbjct: 213 KWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFF 272
Query: 304 KGSLSNIFRGTGGALVLAMYEEIQKYI 330
KG+ +N+ RG GGALVL Y+E+QK +
Sbjct: 273 KGAWANVLRGAGGALVLVFYDELQKLL 299
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 105 bits (265), Expect = 1e-28
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 16 FLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPKEQGV 75
FL AGG++ A+A T T P++ VK LQ ++YKGI+D F +I KE+G+
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSS----AAGGSRKYKGILDCFKKIYKEEGI 60
Query: 76 LSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLK 109
++G + N++R P A+ F +T K LK
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 96.2 bits (240), Expect = 5e-25
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 118 WRYFAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDG 177
F +L +GG AGA + YPLD +TRL + R+Y G+ DC K +K +G
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQ--SSAAGGSRKYKGILDCFKKIYKEEG 59
Query: 178 LVGVYRGFGVSVQGIIIYRAAYFGFFDTAKGMLPDSK 214
+ G+Y+G ++ + A YFG ++T K +L
Sbjct: 60 IRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 71.5 bits (176), Expect = 9e-16
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 241 NFFMSWMIAQVGTTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMT 300
+F S + + +A ++YPLD V+ R +QS R YK + C+K I ++EG+
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTR--LQSSAAGGSRKYKGILDCFKKIYKEEGIR 61
Query: 301 AFFKGSLSNIFR-GTGGALVLAMYEEIQKYI 330
+KG L N+ R A+ YE ++K +
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 32.2 bits (73), Expect = 0.33
Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 48/183 (26%)
Query: 124 NLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYR 183
NL +G +G +YP+D +T + A K+F + +Y
Sbjct: 6 NLVTGALSGVIVDAVLYPIDSIKTNIQAK------------------KSFSFSDIKKLYS 47
Query: 184 GFGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFF 243
G ++ G + A ++ F++ +K +L + N SK +
Sbjct: 48 GILPTLVGTVPASAFFYCFYELSKKLLTE-YRENI------------------SKTNLYL 88
Query: 244 MSWMIAQVGTTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFF 303
+S IA++ A I+ P + V++ + + + V K Y+ I Q+EG+ +F
Sbjct: 89 ISTSIAEI---TACIVRLPFEIVKQNMQVSGNISVLKTIYE--------ITQREGLPSFL 137
Query: 304 KGS 306
S
Sbjct: 138 GKS 140
>gnl|CDD|219386 pfam07364, DUF1485, Protein of unknown function (DUF1485). This
family consists of several hypothetical bacterial
proteins of around 300 residues in length. Members of
this family all appear to be in the Phylum
Proteobacteria. The function of this family is unknown.
Length = 292
Score = 30.6 bits (70), Expect = 1.1
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPKE 72
A L G + +A + R+ +++ I +Q D+ +G++D +
Sbjct: 173 AARLLLRALRGEIRPVMA------LRRLPMLI---PIERQTTSDEPMRGLVDRLRELEAR 223
Query: 73 QGVL--SFWRGNMA 84
GVL SF+ G
Sbjct: 224 GGVLSASFFHGFPW 237
>gnl|CDD|173940 cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD).
1,3-propanediol dehydrogenase-like (PPD). This family is
a member of the iron-containing alcohol dehydrogenase
superfamily, and exhibits a dehydroquinate synthase-like
fold. Protein sequence similarity search and other
biochemical evidences suggest that they are close to the
iron-containing 1,3-propanediol dehydrogenase (EC
1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the
oxidation of propane-1,3-diol to 3-hydroxypropanal with
the simultaneous reduction of NADP+ to NADPH. The
protein structure of Thermotoga maritima TM0920 gene
contains one NADP+ and one iron ion.
Length = 357
Score = 28.8 bits (65), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 248 IAQVGTTVAGILSYPL 263
IAQ GTT+ L YPL
Sbjct: 248 IAQTGTTLPHGLGYPL 263
>gnl|CDD|237181 PRK12722, PRK12722, transcriptional activator FlhC; Provisional.
Length = 187
Score = 28.4 bits (64), Expect = 4.1
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Query: 207 KGMLPDSKNTNFFMSW 222
KGMLP S T++FM+W
Sbjct: 54 KGMLPFS--TDWFMTW 67
>gnl|CDD|233360 TIGR01330, bisphos_HAL2, 3'(2'),5'-bisphosphate nucleotidase, HAL2
family. Sulfate is incorporated into
3-phosphoadenylylsulfate, PAPS, for utilization in
pathways such as methionine biosynthesis. Transfer of
sulfate from PAPS to an acceptor leaves adenosine
3'-5'-bisphosphate, APS. This model describes a form
found in plants of the enzyme 3'(2'),5'-bisphosphate
nucleotidase, which removes the 3'-phosphate from APS to
regenerate AMP and help drive the cycle. Sensitivity of
this essential enzyme to sodium and other metal ions
results is responsible for characterization of this
enzyme as a salt tolerance protein. Some members of this
family are active also as inositol 1-monophosphatase.
Length = 353
Score = 28.7 bits (64), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 95 LNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSLLFVYPLDFARTR-LAADM 153
L K +Y+ E+ W + AGN+ A G + PLDF + R LA D
Sbjct: 276 LRLPIKLSYQ----------EKIWDHAAGNVIVEEAGGIVTDAMGKPLDFGKGRTLALDK 325
Query: 154 G 154
G
Sbjct: 326 G 326
>gnl|CDD|227716 COG5429, COG5429, Uncharacterized secreted protein [Function
unknown].
Length = 261
Score = 28.2 bits (63), Expect = 5.7
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 282 TYKNTIHCWKTIAQQEGMTAFFKGSLSNIFRGTGGALVL 320
TY N + +T+ +G ++ S + + G VL
Sbjct: 198 TYWNVVRDIQTLGMWDGKPTTYELPASELAKKRTGCAVL 236
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 28.0 bits (62), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 193 IIYRAAYFGFFDTAKGMLPDSKNTNFFMS 221
++YRA Y G+ D +L + N N MS
Sbjct: 224 LLYRAIYAGYIDLVSWLLENGANVNAVMS 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,167,332
Number of extensions: 1660066
Number of successful extensions: 1920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1902
Number of HSP's successfully gapped: 17
Length of query: 330
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 233
Effective length of database: 6,635,264
Effective search space: 1546016512
Effective search space used: 1546016512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)