RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15345
(330 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 433 bits (1116), Expect = e-154
Identities = 204/318 (64%), Positives = 244/318 (76%), Gaps = 24/318 (7%)
Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPKE 72
A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI +++YKGI+D VRIPKE
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 63
Query: 73 QGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAG 132
QG LSFWRGN+ANVIRYFPTQALNFAFKD YK FL G+D+++QFWRYFAGNLASGGAAG
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 133 ATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQGI 192
ATSL FVYPLDFARTRLAAD+GK A R+++G+ +C+ K FKSDGL G+Y+GF VSVQGI
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 193 IIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQVG 252
IIYRAAYFG +DTAKG MLPD KN + +SWMIAQ
Sbjct: 184 IIYRAAYFGVYDTAKG------------------------MLPDPKNVHIIVSWMIAQTV 219
Query: 253 TTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFR 312
T VAG++SYP DTVRRR+MMQSG Y T+ CW+ IA+ EG AFFKG+ SN+ R
Sbjct: 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Query: 313 GTGGALVLAMYEEIQKYI 330
G GGA VL +Y+EI+K++
Sbjct: 280 GMGGAFVLVLYDEIKKFV 297
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 165 bits (419), Expect = 6e-49
Identities = 65/316 (20%), Positives = 130/316 (41%), Gaps = 37/316 (11%)
Query: 19 DFAAGGVSAAVAKTATAPIERVKLILQVQ---HINKQIPEDQRYKGIMDVFVRIPKEQGV 75
F G +A +A T P++ K+ LQ+Q + +Y+G++ + + + +G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 76 LSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATS 135
S + G +A + R ++ D+ K ++ KG ++ L +G GA +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGIGS----RLLAGSTTGALA 118
Query: 136 LLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQGIIIY 195
+ P D + R A ++ R+Y + + +G+ G+++G +V I
Sbjct: 119 VAVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177
Query: 196 RAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQVGTTV 255
A +D K L + + D +F + A TTV
Sbjct: 178 NCAELVTYDLIKDTLLKANL------------------MTDDLPCHFTSA-FGAGFCTTV 218
Query: 256 AGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIFR-GT 314
++ P+D V+ R M + Y + HC T+ ++EG AF+KG + + R G+
Sbjct: 219 ---IASPVDVVKTRYMNSALGQ-----YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGS 270
Query: 315 GGALVLAMYEEIQKYI 330
++ YE++++ +
Sbjct: 271 WNVVMFVTYEQLKRAL 286
Score = 115 bits (289), Expect = 4e-30
Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 15/186 (8%)
Query: 4 DGGKKNFSNAVE---FLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYK 60
D K+ ++ E AG + A+A P + VK+ Q Q + +RY+
Sbjct: 89 DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA---RAGGGRRYQ 145
Query: 61 GIMDVFVRIPKEQGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRY 120
++ + I +E+G+ W+G NV R D K+ LK + +
Sbjct: 146 STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH 205
Query: 121 FAGNLASGGAAGATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVG 180
F +G + P+D +TR M ++ QY C + + +G
Sbjct: 206 FTSAFGAGFCTTVIAS----PVDVVKTRY---M--NSALGQYHSAGHCALTMLRKEGPRA 256
Query: 181 VYRGFG 186
Y+GF
Sbjct: 257 FYKGFM 262
Score = 48.1 bits (115), Expect = 2e-06
Identities = 18/93 (19%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 244 MSWMIAQVGTTVAGILSYPLDTVRRRLMMQSGLPVEKRT-----YKNTIHCWKTIAQQEG 298
+ ++ A +A ++++PLDT + RL +Q RT Y+ + T+ + EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 299 MTAFFKGSLSNIFR-GTGGALVLAMYEEIQKYI 330
+ + G ++ + R + ++ + +Y+ ++++
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.025
Identities = 34/288 (11%), Positives = 82/288 (28%), Gaps = 87/288 (30%)
Query: 15 EFLKDFAAGGVSAAVAKTATAPIERVKLIL---QVQHINKQIPEDQRYKGIMDVFVRIPK 71
F+ +F V + K IL ++ HI + + +
Sbjct: 28 AFVDNFDCKDVQ-----------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 72 EQGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAA 131
+++ F + L + Y + + I ++
Sbjct: 77 -------------EMVQKFVEEVL----RINY-KFLMSPIKTEQR-------------QP 105
Query: 132 GATSLLFVYPLDFARTRLAAD---MGKSATDR--QYSGMADCVMKTFKSDGLVGVY--RG 184
+ +++ R RL D K R Y + +++ + V + G
Sbjct: 106 SMMTRMYIE----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLG 160
Query: 185 FGVSVQGIIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWM-IAQVRT---YLRMLPDSKNT 240
G + + + + + M +F + W+ + + L ML +
Sbjct: 161 SGKTWVALDVCLS-----YKVQCKM-------DFKIFWLNLKNCNSPETVLEML---QKL 205
Query: 241 NFFMSWMIAQVGTTVAGILSYPLDTVR---RRLMMQSGLPVEKRTYKN 285
+ + + I + +++ RRL+ + Y+N
Sbjct: 206 LYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKS-------KPYEN 245
Score = 29.8 bits (66), Expect = 1.6
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 24/101 (23%)
Query: 16 FLKDFAAGGVSAAVAKTATA---PIERVKLILQV----QHINKQIPEDQRY-KGIMDVFV 67
FL DF + + +TA + + Q+ +I P+ +R I+D F+
Sbjct: 497 FL-DF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FL 552
Query: 68 RIPKEQGVLSFWRGNMANVIRYFPTQALNFA----FKDTYK 104
+E + +++R AL F++ +K
Sbjct: 553 PKIEENLI----CSKYTDLLR----IALMAEDEAIFEEAHK 585
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 29.8 bits (68), Expect = 1.1
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 10/48 (20%)
Query: 266 VRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF-------FKGS 306
+ ++ P K + W + E A F+G+
Sbjct: 220 LNDDGAIEEAWPAHKELFDK---AWGSQDVIEAQVARMEKRPPKFQGA 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.3
Identities = 37/266 (13%), Positives = 64/266 (24%), Gaps = 110/266 (41%)
Query: 8 KNFSNAVEFL-------------KDFAAGGVSAAVAKTATAP--------IERVKLILQV 46
+ A+ L + ++ P + + ++ V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 47 QHINKQIPEDQR-----YKGIMDVFV---------------------------RIPKEQG 74
N +P ++ G V RIP +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 75 VLSFWRGNMANVIRYFP----------TQALNFAFKDTYKNWF------LK--------G 110
L F R+ P A + KD KN ++ G
Sbjct: 413 KLKF-------SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 111 IDKNEQFWRYFAGNLASGGAAGATSLLFVYPLDFAR-TRLAA----DMGKSATDRQYSGM 165
D R +G+++ + P+ + T+ A D G SG+
Sbjct: 466 SD-----LRVLSGSISE----RIVDCIIRLPVKWETTTQFKATHILDFGPGGA----SGL 512
Query: 166 ADCVMKTFKSDGLVGVYRGFGVSVQG 191
+ DG G V V G
Sbjct: 513 GVLTHRN--KDG-----TGVRVIVAG 531
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure
initiative II, NYSGXRC, (alpha/alpha)6 barrel domain;
2.33A {Bacteroides thetaiotaomicron vpi-5482}
Length = 739
Score = 30.0 bits (67), Expect = 1.4
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 79 WRGNMANVIRYFP--TQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSL 136
+ G+ V + +P +++ T KN ++G+ + F + G L G +
Sbjct: 399 YSGDRHFVNQLYPRMQTMMDYVLGRTNKNGMVEGMSGDWVFVDWADGYLDKKGELSFEQV 458
Query: 137 LFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTF 173
LF L+ A +G ++Y +A +
Sbjct: 459 LFCRSLETM-ALCADLVGDKDGQQKYEKLASALKAKL 494
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 29.1 bits (66), Expect = 1.6
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 12/53 (22%)
Query: 272 MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF-------FKG--SLSNIFRGTG 315
++ GL E + + A Q+ ++ G L + R
Sbjct: 229 LKEGLLGENDAWAA---TFSLPAAQQLISGGLKDGAQTPAGERDLEGLMRSVA 278
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 29.0 bits (66), Expect = 1.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 272 MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF-------FKG 305
+ +GL +E+ Y TI T + EG+ AF +KG
Sbjct: 234 LVTGLAIEEACYAQTIP---TKDRLEGLLAFKEKRPPRYKG 271
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 28.6 bits (65), Expect = 2.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 272 MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF-------FKG 305
+ +GL +EK+ Y+ IH T + EG+ AF +KG
Sbjct: 227 LHTGLQMEKQAYEGVIH---TKDRLEGLQAFKEKRTPMYKG 264
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 28.6 bits (65), Expect = 2.5
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 10/41 (24%)
Query: 272 MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF-------FKG 305
+ + E +++ +EG++AF +KG
Sbjct: 227 LNVAIRYEGELQNL---LFRSEDAKEGLSAFLEKRQPNWKG 264
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 29.0 bits (66), Expect = 2.9
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 13 AVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINK----QIPEDQRYKGIMDVFVR 68
A L++ A+G V + + + + +NK + D+ I +F +
Sbjct: 380 ACYLLQELASGEVLQDRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDE----IQSIFRQ 435
Query: 69 I 69
+
Sbjct: 436 L 436
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics,
APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str}
SCOP: a.118.8.5
Length = 207
Score = 28.1 bits (62), Expect = 3.7
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 77 SFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKG--IDKN--EQF----WRYFAGNLASG 128
+++G+M N ++F K WF K D + ++F + L
Sbjct: 17 LYFQGHMKNDTAALAADIVDFWKKAGPDKWFDKDAAFDNHFHDRFRDAHFAAARRELDGW 76
Query: 129 GAAGATSLLFVYPLD-FARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYR 183
+SL + LD F R ATD AD ++ + R
Sbjct: 77 LEGAESSLALMLLLDQFPRNCFRGTAHMYATDPLARFFADEAIRRGHDQAVSEDLR 132
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 28.3 bits (63), Expect = 4.7
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 3 EDGGKKNFSNAVEFLKDFAAGGVSAAVAKTATA 35
+GG +++ + D +G + A K A
Sbjct: 622 ANGGNVSYNTPEALVADCGSGALHPADLKAAVL 654
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 27.9 bits (63), Expect = 5.0
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 255 VAGILSYP---------LDTVRRRLM-MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF 302
+ IL+ P + + R++ M++ L V + + H W+ I Q GM F
Sbjct: 298 ASLILNTPELRKEWLVEVKGMADRIISMRTQL-VSNLKKEGSSHNWQHITDQIGMFCF 354
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 27.6 bits (62), Expect = 6.1
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 255 VAGILSYP---------LDTVRRRLM-MQSGLPVEKRTYKNTIHCWKTIAQQEGM 299
VA +L P + T+ R+ M+ L + T W I Q GM
Sbjct: 306 VAKLLETPELTEQWHKDMVTMSSRITKMRHAL-RDHLVKLGTPGNWDHIVNQCGM 359
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 27.1 bits (61), Expect = 6.6
Identities = 2/31 (6%), Positives = 5/31 (16%)
Query: 272 MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF 302
L E + + +
Sbjct: 217 TGGALWAEAEAARQWMRSTSGDDIAASRASV 247
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 27.6 bits (62), Expect = 6.7
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 255 VAGILSYP---------LDTVRRRLM-MQSGLPVEKRTYKNTIHCWKTIAQQEGM 299
VA LS P + T+ R++ M+S L + T W I Q GM
Sbjct: 306 VARTLSDPELFHEWTGNVKTMADRILSMRSEL-RARLEALKTPGTWNHITDQIGM 359
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 27.6 bits (62), Expect = 7.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 255 VAGILSYP---------LDTVRRRLM-MQSGLPVEKRTYKNTIHCWKTIAQQEGMTAF 302
V+ IL P L + R+ ++ L V + ++H W I +Q GM A+
Sbjct: 306 VSSILKDPQLTALWKKELKQMSSRIAEVRKRL-VSELKACGSVHDWSHIERQVGMMAY 362
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 27.2 bits (61), Expect = 9.4
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 255 VAGILSYP---------LDTVRRRLM-MQSGLP---VEKRTYKNTIHCWKTIAQQEGMTA 301
+ +L+ L + +R+ + + N + W +Q G+ +
Sbjct: 297 LCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFS 356
Query: 302 F 302
F
Sbjct: 357 F 357
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 26.7 bits (60), Expect = 9.9
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 249 AQVGTTVAGILSYPLDTVR---RRLMMQSGLPVEKRTYKNTIH----CWKTIAQQEGMTA 301
+ I + + V+ + + +++ + T + QEG+ A
Sbjct: 191 EFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKA 250
Query: 302 FF 303
F
Sbjct: 251 FL 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,122,754
Number of extensions: 304949
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 46
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)