RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15345
         (330 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score =  184 bits (466), Expect = 7e-57
 Identities = 199/315 (63%), Positives = 236/315 (74%), Gaps = 24/315 (7%)

Query: 12  NAVEFLKDFAAGGVSAAVAKTATAPIERVKLILQVQHINKQIPEDQRYKGIMDVFVRIPK 71
            A+ FLKDF AGGV+AA++KTA APIERVKL+LQVQH +KQI  +++YKGI+D  VRIPK
Sbjct: 2   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 61

Query: 72  EQGVLSFWRGNMANVIRYFPTQALNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAA 131
           EQG LSFWRGN+ANVIRYFPTQALNFAFKD YK  FL G+D+++QFWRYFAGNLASGGAA
Sbjct: 62  EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 121

Query: 132 GATSLLFVYPLDFARTRLAADMGKSATDRQYSGMADCVMKTFKSDGLVGVYRGFGVSVQG 191
           GATSL FVYPLDFARTRLAAD+GK A  R+++G+ +C+ K FKSDGL G+Y+GF VSVQG
Sbjct: 122 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 181

Query: 192 IIIYRAAYFGFFDTAKGMLPDSKNTNFFMSWMIAQVRTYLRMLPDSKNTNFFMSWMIAQV 251
           IIIYRAAYFG +                         T   MLPD KN +  +SWMIAQ 
Sbjct: 182 IIIYRAAYFGVY------------------------DTAKGMLPDPKNVHIIVSWMIAQT 217

Query: 252 GTTVAGILSYPLDTVRRRLMMQSGLPVEKRTYKNTIHCWKTIAQQEGMTAFFKGSLSNIF 311
            T VAG++SYP DTVRRR+MMQSG       Y  T+ CW+ IA+ EG  AFFKG+ SN+ 
Sbjct: 218 VTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 277

Query: 312 RGTGGALVLAMYEEI 326
           RG GGA VL +Y+EI
Sbjct: 278 RGMGGAFVLVLYDEI 292


>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 161

 Score = 27.8 bits (62), Expect = 1.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 95  LNFAFKDTYKNWFLKGIDKNEQFWRYFAGNLASGGAAGATSLL 137
            NF + D  K   +K +D++      F  ++ +  AA A S +
Sbjct: 111 TNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRI 153


>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
           7091]}
          Length = 119

 Score = 25.6 bits (56), Expect = 5.3
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 6/33 (18%)

Query: 284 KNTIHCWKTIAQQEGMTAFF------KGSLSNI 310
                C K I ++    A++      +GSL +I
Sbjct: 84  TKAAKCAKKIYKRHRFDAWYGWKNHCQGSLPDI 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,481
Number of extensions: 56236
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)