BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15346
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 106/245 (43%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 72 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 129
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV FS
Sbjct: 130 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV-------EGAFS----- 176
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
+YSD YKSGVY
Sbjct: 177 -----------VYSDFLLYKSGVYQ----------------------------------- 190
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
+ E++ ++++GWG ENG PYW + +++ +GD G KILRG++ IES V
Sbjct: 191 HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 250
Query: 242 LPKDN 246
+P+ +
Sbjct: 251 IPRTD 255
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC A+ + P C T PKC
Sbjct: 77 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCE-AHVNGARPPC-TGEGDTPKC 134
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV FS
Sbjct: 135 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV-------EGAFS----- 181
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
+YSD YKSGVY
Sbjct: 182 -----------VYSDFLLYKSGVYQ----------------------------------- 195
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
+ E++ ++++GWG ENG PYW + +++ +GD G KILRG++ IES V
Sbjct: 196 HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 255
Query: 242 LPKDN 246
+P+ +
Sbjct: 256 IPRTD 260
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 22 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 79
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV +YSD YKSG
Sbjct: 80 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 138
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y + + E++ ++I+GWG ENG P
Sbjct: 139 YQH------------------------VTGEMMGGHAIRILGWGVENGTP---------- 164
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG++ IES V
Sbjct: 165 ------------------------YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 200
Query: 242 LPKDN 246
+P+ +
Sbjct: 201 IPRTD 205
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 73 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 130
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV +YSD YKSG
Sbjct: 131 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 189
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y + + E++ ++I+GWG ENG P
Sbjct: 190 YQH------------------------VTGEMMGGHAIRILGWGVENGTP---------- 215
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG++ IES V
Sbjct: 216 ------------------------YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 251
Query: 242 LPKDN 246
+P+ +
Sbjct: 252 IPRTD 256
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 71 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 128
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV +YSD YKSG
Sbjct: 129 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 187
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y + + E++ ++I+GWG ENG P
Sbjct: 188 YQH------------------------VTGEMMGGHAIRILGWGVENGTP---------- 213
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG++ IES V
Sbjct: 214 ------------------------YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 249
Query: 242 LPKDN 246
+P+ +
Sbjct: 250 IPRTD 254
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 134 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 191
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+ Y V++ DI EI KNGPV +YSD YKSG
Sbjct: 192 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 250
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y + + E++ ++I+GWG ENG P
Sbjct: 251 YQH------------------------VTGEMMGGHAIRILGWGVENGTP---------- 276
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG++ IES V
Sbjct: 277 ------------------------YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 312
Query: 242 LPKDN 246
+P+ +
Sbjct: 313 IPRTD 317
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 100/237 (42%), Gaps = 60/237 (25%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C GI W + K G+VTG + ++ GC+P FP C H + P C + P+C
Sbjct: 72 CEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEH-HTKGKYPPCGSKIYKTPRC 130
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C Y + QDK+R K Y V ++ IQ+EIMK GPV A +Y D +YKSG
Sbjct: 131 KQTC-QKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSG- 188
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
+Y I + E + ++I+GWG EN P
Sbjct: 189 -----------IYKHI------------TGETLGGHAIRIIGWGVENKAP---------- 215
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLV 238
YW I +++ E +G+ G +I+RGR+E IES V
Sbjct: 216 ------------------------YWLIANSWNEDWGENGYFRIVRGRDECSIESEV 248
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 61/243 (25%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 77 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 134
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
+ C Y + +DK+ Y V+D +I EI KNGPV ++SD +YKSG
Sbjct: 135 NKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG- 192
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
++ +++G +++ ++I+GWG ENG P
Sbjct: 193 ---------------VYKHEAG--------DVMGGHAIRILGWGIENGVP---------- 219
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG N IES +
Sbjct: 220 ------------------------YWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 255
Query: 242 LPK 244
+P+
Sbjct: 256 IPR 258
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 61/243 (25%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 71 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 128
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
+ C Y + +DK+ Y V+D +I EI KNGPV ++SD +YKSG
Sbjct: 129 NKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG- 186
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
++ +++G +++ ++I+GWG ENG P
Sbjct: 187 ---------------VYKHEAG--------DVMGGHAIRILGWGIENGVP---------- 213
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG N IES +
Sbjct: 214 ------------------------YWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 249
Query: 242 LPK 244
+P+
Sbjct: 250 IPR 252
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 61/243 (25%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 133 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 190
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
+ C Y + +DK+ Y V+D +I EI KNGPV ++SD +YKSG
Sbjct: 191 NKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSG- 248
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
++ +++G +++ ++I+GWG ENG P
Sbjct: 249 ---------------VYKHEAG--------DVMGGHAIRILGWGIENGVP---------- 275
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
YW + +++ +GD G KILRG N IES +
Sbjct: 276 ------------------------YWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 311
Query: 242 LPK 244
+P+
Sbjct: 312 IPR 314
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 102/236 (43%), Gaps = 61/236 (25%)
Query: 8 SSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 67
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC+ C
Sbjct: 29 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCNKTC-E 85
Query: 68 DNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPV 127
Y + +DK+ Y V + +I EI KNGPV +YSD YKSG Y +
Sbjct: 86 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH--- 142
Query: 128 VANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEI 187
S EI+ ++I+GWG ENG PYW
Sbjct: 143 ---------------------VSGEIMGGHAIRILGWGVENGTPYW-------------- 167
Query: 188 VAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
L+G +++ +GD G KILRG++ IES + +P
Sbjct: 168 -------LVG-------------NSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 203
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 99/236 (41%), Gaps = 61/236 (25%)
Query: 8 SSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 67
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC C
Sbjct: 77 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCSKTC-E 133
Query: 68 DNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPV 127
Y + +DK+ Y V + +I EI KNGPV +YSD YKSG Y +
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH--- 190
Query: 128 VANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEI 187
S EI+ ++I+GWG ENG P
Sbjct: 191 ---------------------VSGEIMGGHAIRILGWGVENGTP---------------- 213
Query: 188 VAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
YW + +++ +GD G KILRG++ IES + +P
Sbjct: 214 ------------------YWLVANSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 101/236 (42%), Gaps = 61/236 (25%)
Query: 8 SSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 67
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC C
Sbjct: 77 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCSKTC-E 133
Query: 68 DNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPV 127
Y + +DK+ Y V + +I EI KNGPV +YSD YKSG Y +
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH--- 190
Query: 128 VANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEI 187
S EI+ ++I+GWG ENG PYW
Sbjct: 191 ---------------------VSGEIMGGHAIRILGWGVENGTPYW-------------- 215
Query: 188 VAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
L+G +++ +GD G KILRG++ IES + +P
Sbjct: 216 -------LVG-------------NSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 251
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSE-PECKTLATPQPK 60
C+ G W + GLV+ CQP FP C+H + + + P C PK
Sbjct: 139 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 191
Query: 61 CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
C+ C + YR Y + E D +E+ GP +Y D +Y SG
Sbjct: 192 CNYTCDDPT----IPVVNYRSWTSYALQGE-DDYMRELFFRGPFEVAFDVYEDFIAYNSG 246
Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIV 176
Y + V+ YL G +A V++VGWG NG PYW I
Sbjct: 247 VYHH---VSGQYL---------GGHA------------VRLVGWGTSNGVPYWKIA 278
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSE-PECKTLATPQPK 60
C+ G W + GLV+ CQP FP C+H + + + P C PK
Sbjct: 162 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 214
Query: 61 CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
C+ C + YR Y + E D +E+ GP +Y D +Y SG
Sbjct: 215 CNYTCDDPT----IPVVNYRSWTSYALQGE-DDYMRELFFRGPFEVAFDVYEDFIAYNSG 269
Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIV 176
Y + V+ YL G +A V++VGWG NG PYW I
Sbjct: 270 VYHH---VSGQYL---------GGHA------------VRLVGWGTSNGVPYWKIA 301
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 67/176 (38%), Gaps = 37/176 (21%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSE-PECKTLATPQPK 60
C+ G W + GLV+ CQP FP C+H + + + P C PK
Sbjct: 140 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 192
Query: 61 CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
C C + YR Y + E D +E+ GP +Y D +Y SG
Sbjct: 193 CDYTCDDPT----IPVVNYRSWTSYALQGE-DDYMRELFFRGPFEVAFDVYEDFIAYNSG 247
Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIV 176
Y + V+ YL G +A V++VGWG NG PYW I
Sbjct: 248 VYHH---VSGQYL---------GGHA------------VRLVGWGTSNGVPYWKIA 279
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 193 VKLIGWGEE--NGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
V L+G+G++ G YW + +++G Q+G+ G +I RG +E IES+ A+P
Sbjct: 382 VLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIP 434
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 192 TVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
V +G+GEENG PYW + +++G Q+G G I RG+N + + + +P
Sbjct: 167 AVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIP 218
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 126 PVVANMYLYSDIFSYKSGVYAVSA---SAEIVAYATVKIVGWGEENGRPYWTI 175
PV + +D Y+ G+Y+ ++ + + V +A V VG+GEENG PYW +
Sbjct: 133 PVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHA-VLAVGYGEENGIPYWIV 184
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 44/148 (29%)
Query: 111 YSDIFSYKSGKYG-------------NGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYA 157
YS + Y G YG +GP+ +Y D YK G+Y + +
Sbjct: 317 YSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPF--- 373
Query: 158 TVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEEN--GRPYWTIVSTFGE 215
P+ E+ +A V L+G+G ++ G YW + +++G
Sbjct: 374 ------------NPF-------------ELTNHA-VLLVGYGTDSASGMDYWIVKNSWGT 407
Query: 216 QFGDKGTIKILRGRNEAIIESLVNGALP 243
+G+ G +I RG +E IES+ A P
Sbjct: 408 GWGENGYFRIRRGTDECAIESIAVAATP 435
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG+KG I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 134 YSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
+ F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG+KG I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 145 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 134 YSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
+ F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 145 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 146 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 183
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 145 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 264 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 300
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 134 YSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
+ F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 240 HPSFFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 280
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 146 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 183
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 168 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 204
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 147 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 184
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 169 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 205
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 148 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 185
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 145 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 145 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 182
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 137 IFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
F Y+SGVY + + V + V +VG+G+ NG+ YW +
Sbjct: 146 FFLYRSGVYYEPSCTQNVNHG-VLVVGYGDLNGKEYWLV 183
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 193 VKLIGWGEEN--GRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
V L+G+G ++ G YW + +++G +G+ G +I RG +E IES+ A P
Sbjct: 13 VLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 65
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+ + + PYW I +++ +G+ G I+I +G N+ ++ V+ A+
Sbjct: 164 VLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
V ++G+G ENG+ YW + +++G+ +G G KI R N
Sbjct: 280 VLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNAN 317
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 125 GPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTI 175
GPV SY GVY V IVG+G ENG+ YW +
Sbjct: 246 GPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLV 296
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A V +G+GE G +W I +++GE +G G IK+ R +N A
Sbjct: 151 YDESCNSDNLNHA-VLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNA 203
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A + +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 250 YDESCNSDNLNHAVLA-VGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA 302
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A + +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 150 YDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA 202
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A + +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 149 YDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA 201
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A + +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 151 YDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA 203
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y S +++ + +A + +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 153 YDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA 205
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y + S++ + +A V +G+G + G +W I +++GE +G+KG I + R +N A
Sbjct: 151 YDENCSSDNLNHA-VLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNA 203
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 125 GPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVS 182
GP + + SD Y+SG+Y + + V VG+G + G YW + + +S
Sbjct: 221 GPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLS 278
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 178 VYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR-NEAIIES 236
+Y + + V +G+G + G YW + +++G +G++G I+++R R N I S
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIAS 299
Query: 237 LVNGALP 243
L +LP
Sbjct: 300 LA--SLP 304
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 192 TVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
V L+G+G+ + P+W I +++G +G+KG + RG + ++ + A+
Sbjct: 162 AVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKIL 226
V + GWG +G YW + +++GE +G++G ++I+
Sbjct: 182 VSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIV 215
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVR 177
Y NGP+ + + +Y G+YA + + V + GWG +G YW IVR
Sbjct: 146 YANGPISCGIMATERLANYTGGIYAEYQDTTYINH-VVSVAGWGISDGTEYW-IVR 199
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKIL 226
V + GWG +G YW + +++GE +G++G ++I+
Sbjct: 217 VSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIV 250
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVR 177
Y NGP+ + + +Y G+YA + + V + GWG +G YW IVR
Sbjct: 181 YANGPISCGIMATERLANYTGGIYAEYQDTTYINH-VVSVAGWGISDGTEYW-IVR 234
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 169 GRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
GR + + R + S I A + ++G+G EN + +W + +++G+ +G+ G I+ R
Sbjct: 140 GRDF-QLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAER 197
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 101 NGPVVANMYLYSDIFSYKSGKY----GNGPVVANMYLYSDIFS-YKSGVYAVSASAEIVA 155
N PVV+ + Y ++ S+ N PV M F Y+SG++ + S I A
Sbjct: 103 NAPVVS-IDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIF--TGSCNISA 159
Query: 156 YATVKIVGWGEENGRPYWTI 175
+ +VG+G EN + +W +
Sbjct: 160 NHALTVVGYGTENDKDFWIV 179
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 179 YAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 232
Y + S++ + +A V +G+G + G +W I +++GE +G+ G I + R +N A
Sbjct: 151 YDENCSSDALNHA-VLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNA 203
>pdb|2WEE|A Chain A, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2WEE|B Chain B, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2YES|A Chain A, Crystal Structure Of Rv0371c Complex With Manganese From
Mycobacterium Tuberculosis H37rv
pdb|2YES|B Chain B, Crystal Structure Of Rv0371c Complex With Manganese From
Mycobacterium Tuberculosis H37rv
Length = 197
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 149 ASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWT 208
A A + AT ++ G++ T+ R+ V + EI+ + + + G P+W
Sbjct: 88 ALARVHPRATGIVLMLGDQPQVAPATLRRIIDVGPATEIM------VCRYADGVGHPFWF 141
Query: 209 IVSTFGEQ---FGDKGTIKILRGRNEAIIESLVNGALPKD 245
+ FGE GDKG K++ + E V+G +P D
Sbjct: 142 SRTVFGELARLHGDKGVWKLVHSGRHPVRELAVDGXVPLD 181
>pdb|2WE9|A Chain A, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2WE9|B Chain B, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
Length = 197
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 149 ASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWT 208
A A + AT ++ G++ T+ R+ V + EI + + + G P+W
Sbjct: 88 ALARVHPRATGIVLXLGDQPQVAPATLRRIIDVGPATEI------XVCRYADGVGHPFWF 141
Query: 209 IVSTFGEQ---FGDKGTIKILRGRNEAIIESLVNGALPKD 245
+ FGE GDKG K++ + E V+G +P D
Sbjct: 142 SRTVFGELARLHGDKGVWKLVHSGRHPVRELAVDGCVPLD 181
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G E+G YW +++GE +G G I+I R
Sbjct: 170 VLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQR 204
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 193 VKLIGWGEE-NGRPYWTIVSTFGEQFGDKGTIKILRG 228
V ++G+G +G YWT+ +++G ++G+KG I++ RG
Sbjct: 164 VAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERG 200
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G E G YW + +++G +G++G ++I R
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G E G YW + +++G +G++G ++I R
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G E G YW + +++ +G++G ++ILR
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILR 198
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G ++G+ YW + +++G+ +G++G I + R
Sbjct: 160 VVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMER 194
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 193 VKLIGWG-EENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G E+G+ YWT+ +++G +G++G I++ +
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEK 204
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
+ ++G+G E G YW + +++ +G++G ++ILR
Sbjct: 164 IVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILR 198
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 190 YATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIES 236
Y V ++G+G G YW + +++ +GD G G N +IE
Sbjct: 170 YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQ 216
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V ++G+G +NG+ YW + +++G +G+ G + +R
Sbjct: 278 VLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVR 312
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 125 GPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSAS 184
GPV + ++ Y G++ + V +VG+G +NG+ YW + +
Sbjct: 244 GPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGS--- 300
Query: 185 AEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFG 218
GWGE YW V +G G
Sbjct: 301 ------------GWGESG---YWRQVRNYGNNCG 319
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 160 KIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGE---- 215
K++ W EENGR W+ + V+AV + A+V + W P + S+ G+
Sbjct: 78 KVLIWKEENGR--WSQIAVHAVHS-------ASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 216 QFGDKGT 222
+F + GT
Sbjct: 129 EFKENGT 135
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 193 VKLIGWG----EENGRPYWTIVSTFGEQFGDKGTIKILRGR 229
V ++G+G E +G YW + +++GE++G G +K+ + R
Sbjct: 257 VLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 160 KIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGE---- 215
K++ W EENGR W+ + V+AV + A+V + W P + S+ G+
Sbjct: 80 KVLIWKEENGR--WSQIAVHAVHS-------ASVNSVQWAPHEYGPLLLVASSDGKVSVV 130
Query: 216 QFGDKGTIKILRGRNEAIIESLVNGALPKDNYGVEFGEESGERLSEEF 263
+F + GT + AI VN A E GE +G + S +F
Sbjct: 131 EFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKF 175
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 160 KIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGE---- 215
K++ W EENGR W+ + V+AV + A+V + W P + S+ G+
Sbjct: 78 KVMIWKEENGR--WSQIAVHAVHS-------ASVNSVQWAPHEYGPMLLVASSDGKVSVV 128
Query: 216 QFGDKGTIKILRGRNEAIIESLVNGALPKDNYGVEFGEESGERLSEEF 263
+F + GT + AI VN A E GE +G + S +F
Sbjct: 129 EFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKF 173
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 160 KIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGE---- 215
K++ W EENGR W+ + V+AV + A+V + W P + S+ G+
Sbjct: 78 KVLIWKEENGR--WSQIAVHAVHS-------ASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 216 QFGDKGTIKILRGRNEAIIESLVNGALPKDNYGVEFGEESGERLSEEF 263
+F + GT + AI VN A E GE +G + S +F
Sbjct: 129 EFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKF 173
>pdb|1H34|A Chain A, Crystal Structure Of Lima Bean Trypsin Inhibitor
Length = 83
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 21 TGGAHHSNTGCQPVSFPPCNHANYTTS-EPECKTLATPQPKCHTRC 65
+G HS S P C+H + T S P+C+ CH+ C
Sbjct: 1 SGHHEHSTDXPSXSSKPCCDHCSCTKSIPPQCRCTDLRLDSCHSAC 46
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 227
V +G+G +G+ Y I +++G +G+KG +++ R
Sbjct: 161 VTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|3O0R|B Chain B, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 465
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 21/88 (23%)
Query: 173 WTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIK-------- 224
W + V+A + I+ Y V G G W T G +F ++ TI
Sbjct: 95 WILFWVFAAAGVLTILGYLLVPYAGLARLTGNELW---PTMGREFLEQPTISKAGIVIVA 151
Query: 225 ----------ILRGRNEAIIESLVNGAL 242
+LRGR AI L+ G +
Sbjct: 152 LGFLFNVGMTVLRGRKTAISMVLMTGLI 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,113,479
Number of Sequences: 62578
Number of extensions: 406316
Number of successful extensions: 1051
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 168
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)