RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15346
(280 letters)
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 140 bits (356), Expect = 6e-41
Identities = 68/237 (28%), Positives = 91/237 (38%), Gaps = 72/237 (30%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C+ G + W ++ G+VTGG CQP + PPC H PKC
Sbjct: 69 CNGGYPDAAWKYLTTTGVVTGG-------CQPYTIPPCGHHPEGPPPCCGTP--YCTPKC 119
Query: 62 HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
C + +DK++ K Y V + DI +EIM NGPV A +Y D YKSG
Sbjct: 120 QDGCEKT-----YEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSG- 173
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
++ + SG + VKI
Sbjct: 174 ---------------VYQHTSGKQ--------LGGHAVKI-------------------- 190
Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLV 238
IGWG ENG PYW +++G +G+ G +ILRG NE IES V
Sbjct: 191 --------------IGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEV 233
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 74.7 bits (184), Expect = 7e-16
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y NGP+V +YSD YK GVY + + E+ + N
Sbjct: 141 YRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTN------------- 187
Query: 182 SASAEIVAYATVKLIGWGEE--NGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVN 239
V L+GWGE+ G YW + +++G +G+KG KI RG NE IES
Sbjct: 188 ---------HAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAV 238
Query: 240 GALP 243
A P
Sbjct: 239 FAYP 242
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 64.9 bits (159), Expect = 1e-12
Identities = 53/242 (21%), Positives = 83/242 (34%), Gaps = 92/242 (38%)
Query: 2 CSSGISSSTWVWVHKR-GLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPK 60
C+ G+ + + ++ K G+VT +P YT + CK K
Sbjct: 63 CNGGLPDNAFEYIKKNGGIVTES-----------DYP------YTAHDGTCKF-----KK 100
Query: 61 CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
+++ +G+ Y NDE +Q + KNGPV + Y D F
Sbjct: 101 SNSKYAKI---KGYGDVPY--------NDE-EALQAALAKNGPVSVAIDAYEDDFQL--- 145
Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYA 180
YKSGVY
Sbjct: 146 -------------------YKSGVY---------------------------------KH 153
Query: 181 VSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNG 240
S E+ V ++G+G ENG PYW + +++G +G+ G +I RG NE I S +
Sbjct: 154 TECSGEL--DHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASY 211
Query: 241 AL 242
+
Sbjct: 212 PI 213
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 60.4 bits (146), Expect = 3e-10
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 18/119 (15%)
Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
Y NGP+VA+ D + Y GVY V E +A V + NG VY +
Sbjct: 565 YRNGPIVASFEASPDFYDYADGVYYV----EDFPHARRCTVDLPKHNG--------VYNI 612
Query: 182 SASAEIVAYATVKLIGWGEE--NGRP--YWTIVSTFGEQFGDKGTIKILRGRNEAIIES 236
+ E V +A V L+GWGEE NG+ YW +++G+ +G +G KI+RG+N + IES
Sbjct: 613 TG-WEKVNHAIV-LVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIES 669
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 53.7 bits (129), Expect = 4e-08
Identities = 49/184 (26%), Positives = 69/184 (37%), Gaps = 45/184 (24%)
Query: 61 CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
C TR + Y +F + YY + +I EI ++GPV A++Y SD ++
Sbjct: 316 CKTRRPSRRY---YFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDEN 372
Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYA 180
S + Y + RP +R Y
Sbjct: 373 ------------------STEDVRYVSLDDYSTAS------------ADRP----LRHYF 398
Query: 181 VSASAEIVAYATVKLIGWGE-ENGRPYWTIVSTFGEQFG--DKGTIKILRGRNEAIIESL 237
A V + TV +IGWG ENG YW ++ +G + D GT KI RG N IES
Sbjct: 399 ----ASNVNH-TVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESE 453
Query: 238 VNGA 241
V
Sbjct: 454 VVVM 457
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 49.5 bits (119), Expect = 2e-07
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 35/105 (33%)
Query: 134 YSDIFSYKSGVY-AVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYAT 192
SD YKSG+Y + + +A V IVG+G E
Sbjct: 98 ASDFQFYKSGIYDHPGCGSGTLDHA-VLIVGYGTEV------------------------ 132
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR-NEAIIES 236
ENG+ YW + +++G +G+ G +I RG+ NE IE+
Sbjct: 133 --------ENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEA 169
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 47.2 bits (113), Expect = 2e-06
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 34/107 (31%)
Query: 124 NGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSA 183
GPV + S YK G+Y
Sbjct: 127 YGPVSVAIDASSSFQFYKGGIY---------------------------------SGPCC 153
Query: 184 SAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
S + +A V L+G+G ENG YW + +++G +G+KG I+I RG N
Sbjct: 154 SNTNLNHA-VLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSN 199
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 47.0 bits (112), Expect = 3e-06
Identities = 43/231 (18%), Positives = 67/231 (29%), Gaps = 87/231 (37%)
Query: 2 CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
C G + + HK G+ CN Y + EC P +C
Sbjct: 71 CHGGDPGGVYEYAHKHGIPDET---------------CN--PYQAKDGECN----PFNRC 109
Query: 62 HTRCTNDNYGRGFFQD---KYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYK 118
T C G F Y Y V+ + EI
Sbjct: 110 GT-CNPF--GECFAIKNYTLYFVSDYGSVSGRDK-MMAEI-------------------- 145
Query: 119 SGKYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRV 178
Y GP+ + + +Y GVY E P +
Sbjct: 146 ---YARGPISCGIMATEALENYTGGVYK-------------------EYVQDPLINHI-- 181
Query: 179 YAVSASAEIVAYATVKLIGWG-EENGRPYWTIVSTFGEQFGDKGTIKILRG 228
+ + GWG +ENG YW + +++GE +G++G +I+
Sbjct: 182 --------------ISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 40.5 bits (94), Expect = 6e-04
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIE 235
V L+G+ PYW I +++GE +G+KG +++ G N ++
Sbjct: 290 VLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLT 332
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 38.6 bits (90), Expect = 0.002
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 21/104 (20%)
Query: 76 QDKYRFKRYYWV-NDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPVVANMYLY 134
K + K Y V + + DI++ + K GPVVA +YS K G V
Sbjct: 109 AAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYE-- 166
Query: 135 SDIFSYKSGVYAVSASAEIVAYATVKIVGWGEEN--GRPYWTIV 176
G +AV IVG+ + G+ + +
Sbjct: 167 ----DGDLGGHAVV------------IVGYDDNYVEGKGAFIVK 194
>gnl|CDD|236510 PRK09428, pssA, phosphatidylserine synthase; Provisional.
Length = 451
Score = 30.9 bits (71), Expect = 0.77
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 76 QDKYRFKRYYWV-NDEVAD-----IQQEIMKNGPVVAN 107
DKYR+ RY+ + N E+AD IQQ ++ N P V
Sbjct: 163 HDKYRYDRYHLIRNAELADSMVNFIQQNLL-NSPAVNR 199
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 30.4 bits (69), Expect = 0.94
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 125 GPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWG--EENGRPYWTI 175
P V + + ++ YKSGVY + V +VG G E+ + YW I
Sbjct: 358 SPTVVYIAVSRELLKYKSGVYNGECGKSLNHA--VLLVGEGYDEKTKKRYWII 408
>gnl|CDD|193187 pfam12711, Kinesin-relat_1, Kinesin motor. This family is closely
related to Kinesin-related, pfam06548.
Length = 86
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 229 RNEAI--IESLVNGALPKDNYGVEFGEESGERLSEE 262
R + I +E L++G+L + + EE E L EE
Sbjct: 1 REDKIKRLEKLLDGSLSAE----SYLEEENEALKEE 32
>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 29.7 bits (68), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 231 EAIIESLVN-GALPKDNYGVEFGEESGERLSEEFGVRAESS 270
AII L+ G KD + E L+EE+GVRA +
Sbjct: 15 SAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATD 55
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 28.2 bits (63), Expect = 4.6
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 20 VTGGAHHSNTGCQPVSFPPCNHANYT--TSEPECKTLATPQPKCHT 63
V G + GC + P C +A EP LA Q KCH
Sbjct: 273 VVPGKYDRPNGC--LLNPRCPYATDRCRAEEPALNMLAGRQSKCHY 316
>gnl|CDD|173156 PRK14693, PRK14693, hypothetical protein; Provisional.
Length = 552
Score = 28.6 bits (63), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 170 RPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRP 205
R +WT R AV+ ++AY + W + GRP
Sbjct: 290 RSWWTAGRAAAVALGVLVLAYGAISF--WLDSQGRP 323
>gnl|CDD|185753 cd09214, GH64-like, glycosyl hydrolase 64 family. This family is
represented by the laminaripentaose-producing,
beta-1,3-glucanase (LPHase) of Streptomyces matensis
and related bacterial and ascomycete proteins. LPHase
is a member of glycoside hydrolase family 64 (GH64), it
is an inverting enzyme involved in the cleavage of
long-chain polysaccharide beta-1,3-glucans, into
specific pentasaccharide oligomers. LPHase is a
two-domain crescent fold structure: one domain is
composed of 10 beta-strands, eight coming from the
N-terminus of the protein and two from the C-terminal
region, and the protein has a second inserted domain;
this cd includes both domains. This protein has an
electronegative, substrate-binding cleft, and conserved
Glu and Asp residues involved in the cleavage of the
beta-1,3-glucan, laminarin, a plant and fungal cell
wall component. Among bacteria, many
beta-1,3-glucanases are implicated in fungal cell wall
degradation. Also included in this family is GluB , the
beta-1,3-glucanase B from Lysobacter enzymogenes Strain
N4-7. Recombinant GluB demonstrated higher relative
activity toward the branched-chain beta-1,3 glucan
substrate zymosan A than toward linear beta-1,3 glucan
substrates. Sometimes these two domains are found
associated with other domains such as in the
Catenulispora acidiphila DSM 44928 carbohydrate binding
family 6 protein in which they are positioned
N-terminal of a carbohydrate binding module, family 6
(CBM_6) domain. In the Cellulosimicrobium cellulans,
glucan endo-1,3-beta-glucosidase, they are positioned
N-terminal of a RICIN, carbohydrate-binding domain, and
in the Salinispora tropica CNB-440, coagulation factor
5/8 C-terminal domain (FA58C) protein, they are
positioned C-terminal of two FA58C domains which are
proposed to function as cell surface-attached,
carbohydrate-binding domain. This FA58C-containing
protein has an internal peptide deletion (of approx. 44
residues) in the LPHase domain II.
Length = 319
Score = 28.1 bits (63), Expect = 5.1
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 7 SSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQP 59
S+ WV+V G + + N ++ N+AN + E P P
Sbjct: 26 STGNWVYVDATGNLVPISVADNDAPGHLTKNGGNYANIFFTLSEASNKILPPP 78
>gnl|CDD|200213 TIGR02810, agaZ_gatZ, D-tagatose-bisphosphate aldolase, class II,
non-catalytic subunit. Aldolases specific for
D-tagatose-bisphosphate occur in distinct pathways in
Escherichia coli and other bacteria, one for the
degradation of galactitol (formerly dulcitol) and one
for degradation of N-acetyl-galactosamine and
D-galactosamine. This family represents a protein of
both systems that behaves as a non-catalytic subunit of
D-tagatose-bisphosphate aldolase, required both for full
activity and for good stability of the aldolase. Note
that members of this protein family appear in public
databases annotated as putative tagatose 6-phosphate
kinases, possibly in error [Energy metabolism, Sugars].
Length = 420
Score = 28.1 bits (63), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 83 RYYWVNDEVADIQQEIMKN 101
RYYW + +A + +M N
Sbjct: 351 RYYWPHPRIAAAVETLMAN 369
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 27.8 bits (63), Expect = 6.2
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 230 NEAIIESLVNGALPKDNYGVEFGEESGERLSEEFGVRAESSEE 272
+EAII + + Y + GE + E + E G EE
Sbjct: 178 DEAIIRYV------RRKYNLLIGERTAEEIKIEIGSAYPLDEE 214
>gnl|CDD|213521 TIGR00281, TIGR00281, segregation and condensation protein B.
Shown to be required for chromosome segregation and
condensation in B. subtilis [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 186
Score = 27.1 bits (60), Expect = 7.5
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 186 EIVAYATVKLIGWGEENGRPYW-TIVSTFGEQFG 218
++V V +G + GR + F + FG
Sbjct: 121 DLVEKGLVVELGRKDTPGRSFIYETTPKFYDYFG 154
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 27.7 bits (63), Expect = 8.0
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 19/62 (30%)
Query: 149 ASAEIVAYATVKIVGWGEENGRPYWTIV----RVYAVSASAEIV------AYATVKLIGW 198
A A+ V +A K E+G+ +V RV V+A + + AYA + I +
Sbjct: 354 ADADKVFHAGTK-----LEDGK----LVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDF 404
Query: 199 GE 200
Sbjct: 405 DG 406
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.414
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,190,640
Number of extensions: 1338446
Number of successful extensions: 1166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 35
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)