RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15346
         (280 letters)



>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 254

 Score = 85.4 bits (210), Expect = 3e-20
 Identities = 72/243 (29%), Positives = 100/243 (41%), Gaps = 61/243 (25%)

Query: 2   CSSGISSSTWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 61
           C+ G  +  W +  ++GLV+GG + S+ GC+P S PPC H +   S P C T     PKC
Sbjct: 72  CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 129

Query: 62  HTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGK 121
              C    Y   + QDK+     Y V++   DI  EI KNGPV     +YSD   YKSG 
Sbjct: 130 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 188

Query: 122 YGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAV 181
           Y +                                  ++I+GWG ENG PYW +V     
Sbjct: 189 YQHVTGEMMGG------------------------HAIRILGWGVENGTPYW-LVA---- 219

Query: 182 SASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGA 241
                                        +++   +GD G  KILRG++   IES V   
Sbjct: 220 -----------------------------NSWNTDWGDNGFFKILRGQDHCGIESEVVAG 250

Query: 242 LPK 244
           +P+
Sbjct: 251 IPR 253


>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
           catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 50/220 (22%)

Query: 24  AHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYRFKR 83
           +           FP      Y       +    P     + C        ++  +Y +  
Sbjct: 60  SCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVG 119

Query: 84  YYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPVVANMYLYSDIFSYKSG 143
            ++     A ++ E++ +GP+     +Y D   YK G                   Y   
Sbjct: 120 GFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKG------------------IYHHT 161

Query: 144 VYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENG 203
                 +   +    V +VG+G +                                  +G
Sbjct: 162 GLRDPFNPFELTNHAVLLVGYGTD--------------------------------SASG 189

Query: 204 RPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 243
             YW + +++G  +G+ G  +I RG +E  IES+   A P
Sbjct: 190 MDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 229


>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
           {House-dust mite (Dermatophagoides pteronyssinus)
           [TaxId: 6956]}
          Length = 302

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 126 PVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASA 185
           P      + +    Y      +  +      A   I+G  + +   ++    +       
Sbjct: 183 PNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGY 242

Query: 186 EIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIES 236
           +   +A V ++G+    G  YW + +++   +GD G        +  +IE 
Sbjct: 243 QPNYHA-VNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 292


>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 228

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 190 YATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALPK 244
              V  +G+GEENG PYW + +++G Q+G  G   I RG+N   + +  +  +P 
Sbjct: 173 NHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL 227


>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 275

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA--------IIESLVNGALP 243
           V + GWG  +G  YW + +++GE +G++G ++I+    +          IE       P
Sbjct: 215 VSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDP 273


>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 214

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 151 AEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIV 210
           A +     + +             I R      S  ++ +A + L+G+G+ +  P+W I 
Sbjct: 122 AWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVL-LVGYGQRSDVPFWAIK 180

Query: 211 STFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
           +++G  +G+KG   + RG     + ++ + A+
Sbjct: 181 NSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212


>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
          Length = 215

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 15/50 (30%), Positives = 32/50 (64%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 242
           V L+G+ +    PYW I +++  Q+G++G I+I +G N+ +++   + A+
Sbjct: 164 VLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213


>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 316

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 31/234 (13%), Positives = 62/234 (26%), Gaps = 42/234 (17%)

Query: 9   STWVWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTL-ATPQPKCHTRCTN 67
            +  W  K  +           C   S                 +L       C     N
Sbjct: 99  RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 158

Query: 68  DNYGRGFFQDKYRF----------KRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSY 117
           +    G     +++          + Y +   E +               + +     + 
Sbjct: 159 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKAL 218

Query: 118 KSGKYGNGPVVANMYLYSDIF-SYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIV 176
                  GP+   +    + F  YK G+Y     +       V +VG+G E+        
Sbjct: 219 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST------- 271

Query: 177 RVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
                                  E +   YW + +++GE++G  G +K+ + R 
Sbjct: 272 -----------------------ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR 302


>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
           3649]}
          Length = 218

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           V  +G+G  +G+ Y  I +++G  +G+KG +++ R    
Sbjct: 161 VTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGN 199


>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
           papaya) [TaxId: 3649]}
          Length = 216

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           V  +G+G+  G+ Y  I +++G  +G+KG I+I R    
Sbjct: 161 VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGN 199


>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 217

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 27/38 (71%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
           V ++G+G+ NG+ YW + +++G  FG++G I++ R + 
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203


>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit
           (Actinidia chinensis) [TaxId: 3625]}
          Length = 218

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 194 KLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
            ++G+G E G  YW + +++   +G++G ++ILR   
Sbjct: 165 TIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVG 201


>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
           [TaxId: 5833]}
          Length = 241

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 26/170 (15%)

Query: 61  CHTRCTNDNYGRGFFQDKYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSG 120
           C+    N+ +              Y    +  ++              YL       K  
Sbjct: 80  CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEA 139

Query: 121 KYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYA 180
               GP+  ++ +  D   YK G++      ++       +VG+G +      T      
Sbjct: 140 LRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVM--LVGFGMKEIVNPLT------ 191

Query: 181 VSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
                              +     Y+ I +++G+Q+G++G I I    +
Sbjct: 192 ------------------KKGEKHYYYIIKNSWGQQWGERGFINIETDES 223


>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
           rhizome (Zingiber officinale) [TaxId: 94328]}
          Length = 216

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 195 LIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           ++G+G EN + +W + +++G+ +G+ G I+  R    
Sbjct: 163 VVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIEN 199


>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 215

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 230
           V  +G+G + G  +W I +++GE +G+KG I + R +N
Sbjct: 164 VLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKN 201


>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
           (Ricinus communis) [TaxId: 3988]}
          Length = 224

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 107 NMYLYSDIFSYKSGKYGNGPVVANMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGE 166
              + ++         G   V         I  +++ V     +A + A A   +    +
Sbjct: 80  RGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHEN-VPENDENALLKAVANQPVSVAID 138

Query: 167 ENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKIL 226
             G  +          +    + +    +      +G  YWT+ +++G ++G+KG I++ 
Sbjct: 139 AGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRME 198

Query: 227 RGRNE 231
           RG ++
Sbjct: 199 RGISD 203


>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia
           coronaria) [TaxId: 52861]}
          Length = 215

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 11/39 (28%), Positives = 26/39 (66%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           V ++G+G ++G+ YW + +++G+ +G++G I + R    
Sbjct: 160 VVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVAS 198


>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 221

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 23/208 (11%), Positives = 54/208 (25%), Gaps = 54/208 (25%)

Query: 25  HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYRFKRY 84
           +  +      +            +   +       + +     D   +   ++       
Sbjct: 52  NLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTG 111

Query: 85  Y--WVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPVVANMYLYSDIFSYKS 142
           +      +   + + +   GP+   M      F +                      YKS
Sbjct: 112 FTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQF----------------------YKS 149

Query: 143 GVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVRVYAVSASAEIVAYATVKLIGWGEEN 202
           G+Y     +       V +VG+G E                                  +
Sbjct: 150 GIYFEPDCSSKNLDHGVLVVGYGFEGA------------------------------NSD 179

Query: 203 GRPYWTIVSTFGEQFGDKGTIKILRGRN 230
              YW + +++G ++G  G +KI + +N
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKN 207


>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
          Length = 212

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           V  +G+G      Y  I +++G  +G+ G I+I RG   
Sbjct: 161 VAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGN 195


>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
           coronaria) [TaxId: 52861]}
          Length = 208

 Score = 32.3 bits (72), Expect = 0.039
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 193 VKLIGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 231
           V ++G+       YW + +++G  +G+KG I++LR    
Sbjct: 159 VTIVGYQAN----YWIVRNSWGRYWGEKGYIRMLRVGGC 193


>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
           desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 293

 Score = 27.6 bits (59), Expect = 1.5
 Identities = 9/108 (8%), Positives = 14/108 (12%), Gaps = 2/108 (1%)

Query: 20  VTGGAHHSNTGCQPVSFPPCNHANYTTSEPEC--KTLATPQPKCHTRCTNDNYGRGFFQD 77
           V    +      +PV F    H     +   C           CHT              
Sbjct: 19  VGEKPNPKGAAMKPVVFNHLIHEKKIDNCETCHHTGDPVSCSTCHTVEGKAEGNYITLDR 78

Query: 78  KYRFKRYYWVNDEVADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNG 125
                           +                          +    
Sbjct: 79  AMHATNIAKRAKGNTPVSCVSCHEQQTKERRECAGCHAIVTPKRDEAW 126


>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
           allosteric (dimerisation) domain {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 27.0 bits (59), Expect = 1.6
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 9/97 (9%)

Query: 123 GNGPVVA------NMYLYSDIFSYKSGVYAVSASAEIVAYATVKIVGWGEENGRPYWTIV 176
           GNGP+ A      ++     +  Y    +A+SA  +  A A V+         +P     
Sbjct: 40  GNGPLAAFVHALADVGFDVAVLDYY--EHAMSAGDDAQAAAYVEASVTIASPAQPGEAGR 97

Query: 177 RVYAVSASAEIVAYATVKLIGWGEENGRPYWTI-VST 212
                   A                  +  W + ++ 
Sbjct: 98  HASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAP 134


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 27.5 bits (61), Expect = 1.8
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query: 74  FFQDKYRFK---RYYWVNDEVADIQQEIMKN 101
               +Y      RYYW +  + +  + +M N
Sbjct: 338 LLDIRYSLSDRIRYYWPHSRIKNSVETMMVN 368


>d1rlha_ d.256.1.1 (A:) Hypothetical protein Ta1353 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 151

 Score = 26.6 bits (59), Expect = 2.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 231 EAIIESLVNGALPKDNYGVEFGEESGERLSEEFGVRAESSEE 272
           E + E +    +P   YG+ F E SG+RL     +R + +++
Sbjct: 37  EDLNEIIR-THVPGSKYGIGFSEASGDRL-----IRYDGNDD 72


>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091)
           {Thermus thermophilus [TaxId: 274]}
          Length = 161

 Score = 25.7 bits (57), Expect = 4.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 231 EAIIESLVNGALPKDNYGVEFGEESGERL 259
           E + E+LV  A+P   +G+ F E SG+RL
Sbjct: 28  EDLHEALV-TAVPGIRFGLAFSEASGKRL 55


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 26.1 bits (57), Expect = 5.7
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 239 NGALP---KDNYGVEFGEESGERLSEEFGVRAESSEEFRENGE 278
           NG L     D   VE   E GE     FG  +E+ EE R N +
Sbjct: 729 NGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQ 771


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 26.2 bits (57), Expect = 5.9
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 236 SLVNGALP---KDNYGVEFGEESGERLSEEFGVRAESSEEFRENG 277
             +NGAL     D   VE  E+ GE     FG   E  +     G
Sbjct: 646 LALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKG 690


>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
           {Thermotoga maritima [TaxId: 2336]}
          Length = 535

 Score = 25.9 bits (55), Expect = 6.5
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 91  VADIQQEIMKNGPVVANMYLYSDIFSYKSGKYGNGPVVANMYLYSDIFSY 140
           VA + + ++K+ P +  ++     F      + N P   N Y     ++ 
Sbjct: 471 VAKLSEILLKDLPFI-PLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNG 519


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,113,886
Number of extensions: 53634
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 32
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.5 bits)