BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15347
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 51/67 (76%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPP 60
+ICALK PGKY +VSAFAPICNP+ C WG+ AF YLG D+ WK YDAT LVK Y G
Sbjct: 156 LICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQ 215
Query: 61 LELLIDQ 67
L++LIDQ
Sbjct: 216 LDILIDQ 222
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKV 55
+ AL+ P +Y +VSAF+PI NP+ C WG+ AF AYLG+D W++YDA+ L++
Sbjct: 156 LTIALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRA 210
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKV 55
+ AL+ P +Y +VSAF+PI NP+ C WG+ AF AYLG+D W++YDA+ L +
Sbjct: 156 LTIALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLXRA 210
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELV-KVYDGP 59
++ ALK P Y++ SAF+PI NP+ C WG AF YLG D+ W YD+ +L+ K
Sbjct: 154 LMIALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSN 213
Query: 60 PLELLIDQ 67
L +L+ Q
Sbjct: 214 YLPMLVSQ 221
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVK 54
++ AL+ +Y +VSAF+PI +P WG AF AYLG+D W+ YDA L++
Sbjct: 160 LVLALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQ 213
>pdb|3E4D|A Chain A, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|B Chain B, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|C Chain C, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|E Chain E, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|D Chain D, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|F Chain F, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
Length = 278
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 4 ALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPL-E 62
ALK P ++ + SAFAPI P W A + YLG D W+ YDA LV+ DG E
Sbjct: 158 ALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVE--DGARFPE 215
Query: 63 LLIDQ 67
LIDQ
Sbjct: 216 FLIDQ 220
>pdb|4FOL|A Chain A, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|B Chain B, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|C Chain C, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|D Chain D, S-Formylglutathione Hydrolase Variant H160i
Length = 299
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 10 KYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVK 54
+Y + SAFAPI NP WG+ AFK YLG ++ W+ YD L+K
Sbjct: 179 RYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIK 223
>pdb|1PV1|A Chain A, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|B Chain B, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|C Chain C, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|D Chain D, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
Length = 299
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 10 KYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVK 54
+Y + SAFAPI NP WG+ AFK YLG ++ W+ YD L+K
Sbjct: 179 RYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIK 223
>pdb|3C6B|A Chain A, Reaction Product Of Paraoxon And S-Formylglutathione
Hydrolase W197i Mutant
pdb|4FLM|A Chain A, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
pdb|4FLM|B Chain B, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
Length = 299
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 10 KYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVK 54
+Y + SAFAPI NP G+ AFK YLG ++ W+ YD L+K
Sbjct: 179 RYKSCSAFAPIVNPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIK 223
>pdb|3TG1|B Chain B, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 158
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 24 MQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQI 68
+ C+ G+D+FK ++ +V+ D + E +V PL ++++ +
Sbjct: 79 ISCREGKDSFKRIFSKEIIVY-DENTNEPSRVMPSQPLHIVLESL 122
>pdb|2OUC|A Chain A, Crystal Structure Of The Map Kinase Binding Domain Of Mkp5
pdb|2OUC|B Chain B, Crystal Structure Of The Map Kinase Binding Domain Of Mkp5
Length = 142
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 24 MQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQI 68
+ C+ G+D+FK ++ +V+ D + E +V PL ++++ +
Sbjct: 69 ISCREGKDSFKRIFSKEIIVY-DENTNEPSRVMPSQPLHIVLESL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,276,978
Number of Sequences: 62578
Number of extensions: 121394
Number of successful extensions: 281
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)