Query psy15347
Match_columns 101
No_of_seqs 101 out of 529
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3101|consensus 100.0 2E-36 4.3E-41 236.4 5.2 83 1-84 156-243 (283)
2 COG0627 Predicted esterase [Ge 99.7 8.5E-19 1.8E-23 140.1 0.1 94 1-94 167-286 (316)
3 PLN02442 S-formylglutathione h 99.2 3.6E-12 7.8E-17 98.0 3.0 88 2-89 159-250 (283)
4 TIGR02821 fghA_ester_D S-formy 99.2 1.4E-11 3.1E-16 93.7 3.0 88 2-90 154-245 (275)
5 PF00756 Esterase: Putative es 98.7 2.1E-09 4.5E-14 78.9 -0.9 66 1-74 130-197 (251)
6 PF00326 Peptidase_S9: Prolyl 96.2 0.0021 4.5E-08 46.4 1.1 86 3-89 81-176 (213)
7 PRK10439 enterobactin/ferric e 96.0 0.0023 4.9E-08 52.8 0.8 74 1-89 303-380 (411)
8 COG4947 Uncharacterized protei 92.5 0.053 1.1E-06 42.3 0.9 78 2-88 117-202 (227)
9 PRK10115 protease 2; Provision 92.3 0.14 3.1E-06 44.8 3.5 80 6-88 544-637 (686)
10 TIGR01840 esterase_phb esteras 81.7 1.6 3.4E-05 31.7 2.9 69 2-76 111-184 (212)
11 COG2382 Fes Enterochelin ester 80.9 0.4 8.6E-06 39.1 -0.6 77 1-89 192-269 (299)
12 PRK10566 esterase; Provisional 79.5 1.7 3.7E-05 31.4 2.4 44 43-88 171-217 (249)
13 PF10503 Esterase_phd: Esteras 67.8 9.9 0.00021 29.2 4.2 70 3-76 114-185 (220)
14 COG1770 PtrB Protease II [Amin 62.0 4.7 0.0001 36.3 1.6 59 7-74 548-623 (682)
15 PF07859 Abhydrolase_3: alpha/ 55.0 4 8.6E-05 28.9 -0.0 30 61-90 167-197 (211)
16 PRK04940 hypothetical protein; 46.4 32 0.00069 26.0 3.7 57 18-80 85-144 (180)
17 KOG1455|consensus 45.5 18 0.00038 29.9 2.3 32 56-87 242-276 (313)
18 PRK05077 frsA fermentation/res 44.0 42 0.00091 27.6 4.3 72 3-76 282-371 (414)
19 cd05484 retropepsin_like_LTR_2 42.3 5.8 0.00013 25.4 -0.7 23 58-80 9-31 (91)
20 PF09086 DUF1924: Domain of un 40.9 47 0.001 23.2 3.6 43 6-48 44-93 (98)
21 PF05728 UPF0227: Uncharacteri 39.8 30 0.00065 25.7 2.7 56 19-76 85-150 (187)
22 COG1506 DAP2 Dipeptidyl aminop 39.4 15 0.00032 31.8 1.1 83 3-89 490-583 (620)
23 PRK11460 putative hydrolase; P 39.2 15 0.00033 27.3 1.0 29 60-88 148-179 (232)
24 PF02230 Abhydrolase_2: Phosph 38.1 13 0.00028 27.0 0.4 51 2-76 121-171 (216)
25 PRK10162 acetyl esterase; Prov 32.7 18 0.00039 28.3 0.5 30 61-90 249-279 (318)
26 COG3571 Predicted hydrolase of 32.4 33 0.00072 26.7 1.9 35 59-97 141-175 (213)
27 PF08284 RVP_2: Retroviral asp 24.4 36 0.00077 24.0 0.8 17 60-76 32-48 (135)
28 TIGR03056 bchO_mg_che_rel puta 24.3 83 0.0018 22.4 2.7 18 59-76 219-236 (278)
29 COG1647 Esterase/lipase [Gener 23.6 71 0.0015 25.6 2.4 46 31-76 135-197 (243)
30 PRK10465 hydrogenase 2-specifi 21.5 49 0.0011 24.8 1.1 18 8-25 102-119 (159)
31 PF09331 DUF1985: Domain of un 21.2 55 0.0012 23.2 1.2 13 25-37 127-139 (142)
32 COG0400 Predicted esterase [Ge 20.5 35 0.00077 25.9 0.1 59 3-88 116-177 (207)
33 cd05482 HIV_retropepsin_like R 20.3 38 0.00083 22.5 0.3 24 58-81 7-30 (87)
No 1
>KOG3101|consensus
Probab=100.00 E-value=2e-36 Score=236.43 Aligned_cols=83 Identities=45% Similarity=0.829 Sum_probs=77.9
Q ss_pred CeeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccccccc
Q psy15347 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSVRAMT 80 (101)
Q Consensus 1 L~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~~qLh 80 (101)
|+|+||||++|+|||||||||||++||||||||++|||+|++.|++||+|+||+++.+.+..||||||.+|+||++ ||.
T Consensus 156 l~~~Lkn~~kykSvSAFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~-qLl 234 (283)
T KOG3101|consen 156 LTIYLKNPSKYKSVSAFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAE-QLL 234 (283)
T ss_pred EEEEEcCcccccceeccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhh-hcC
Confidence 6899999999999999999999999999999999999999999999999999999988888999999999999985 444
Q ss_pred c-----ccc
Q psy15347 81 V-----SGK 84 (101)
Q Consensus 81 ~-----~~~ 84 (101)
+ +||
T Consensus 235 Pe~l~~a~~ 243 (283)
T KOG3101|consen 235 PENLLEACK 243 (283)
T ss_pred hHHHHHHhh
Confidence 4 666
No 2
>COG0627 Predicted esterase [General function prediction only]
Probab=99.71 E-value=8.5e-19 Score=140.12 Aligned_cols=94 Identities=30% Similarity=0.475 Sum_probs=80.4
Q ss_pred CeeeccCCCceeeeccCCCccCCC---------CCchHHHHHHhhcCCChh-hhhhcCHHHHHhh--cCC---------C
Q psy15347 1 MICALKCPGKYLAVSAFAPICNPM---------QCQWGRDAFKAYLGRDEL-VWKDYDATELVKV--YDG---------P 59 (101)
Q Consensus 1 L~iaLknP~~f~SvSAFAPI~nP~---------~~pWG~kaf~~YLG~d~~-~W~~yDa~~Lik~--~~~---------~ 59 (101)
|.+|+|||++|++||||||+++|+ .++||.+++.+|+|++.+ .|++||++.++++ ... .
T Consensus 167 l~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~ 246 (316)
T COG0627 167 LKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGGS 246 (316)
T ss_pred hhhhhhCcchhceeccccccccccccccccccccccccCccHHHhcCCCccccccccCchhHHHHhhhcccccceecccC
Confidence 578999999999999999999999 999999999999999866 9999999999997 222 4
Q ss_pred CCceEEeecCCCCCcc-c----ccccccccccccchhhce
Q psy15347 60 PLELLIDQIGGHKVTS-V----RAMTVSGKSFQVTPILED 94 (101)
Q Consensus 60 ~~~ILIDqG~~D~Fl~-~----~qLh~~~~~~~~~~~~~~ 94 (101)
+.++++|||.+|+|++ . +.+++++..+|.-..+.+
T Consensus 247 ~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 286 (316)
T COG0627 247 PPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRD 286 (316)
T ss_pred CCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeee
Confidence 5689999999999998 3 556678887776655443
No 3
>PLN02442 S-formylglutathione hydrolase
Probab=99.24 E-value=3.6e-12 Score=98.04 Aligned_cols=88 Identities=42% Similarity=0.717 Sum_probs=76.9
Q ss_pred eeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc----c
Q psy15347 2 ICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV----R 77 (101)
Q Consensus 2 ~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~----~ 77 (101)
.++++||++|+++.+++|+++|..++|+.+.+..|+|.+++.|++||....+.+......++||.+|++|++.+. +
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHH
Confidence 457899999999999999999998899999999999999999999999999998755577999999999998773 3
Q ss_pred cccccccccccc
Q psy15347 78 AMTVSGKSFQVT 89 (101)
Q Consensus 78 qLh~~~~~~~~~ 89 (101)
.+.++.++.|+.
T Consensus 239 ~~~~~l~~~g~~ 250 (283)
T PLN02442 239 NFEEACKEAGAP 250 (283)
T ss_pred HHHHHHHHcCCC
Confidence 567777777764
No 4
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.17 E-value=1.4e-11 Score=93.68 Aligned_cols=88 Identities=40% Similarity=0.667 Sum_probs=76.8
Q ss_pred eeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc----c
Q psy15347 2 ICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV----R 77 (101)
Q Consensus 2 ~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~----~ 77 (101)
.+++++|++|+++.+++|+.+|..++|+++++..|||.+.+.|..+|+..++.+. ....+++|.+|+.|++++. .
T Consensus 154 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~plli~~G~~D~~v~~~~~~~ 232 (275)
T TIGR02821 154 VIALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADG-GRHSTILIDQGTADQFLDEQLRPD 232 (275)
T ss_pred HHHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhc-ccCCCeeEeecCCCcccCccccHH
Confidence 4678999999999999999999999999999999999998899999999998875 3456999999999998875 3
Q ss_pred cccccccccccch
Q psy15347 78 AMTVSGKSFQVTP 90 (101)
Q Consensus 78 qLh~~~~~~~~~~ 90 (101)
+++++.+.+|+..
T Consensus 233 ~~~~~l~~~g~~v 245 (275)
T TIGR02821 233 AFEQACRAAGQAL 245 (275)
T ss_pred HHHHHHHHcCCCe
Confidence 5888888888763
No 5
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.69 E-value=2.1e-09 Score=78.92 Aligned_cols=66 Identities=29% Similarity=0.520 Sum_probs=55.7
Q ss_pred CeeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhh--cCCCCCceEEeecCCCCCc
Q psy15347 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKV--YDGPPLELLIDQIGGHKVT 74 (101)
Q Consensus 1 L~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~--~~~~~~~ILIDqG~~D~Fl 74 (101)
|.++++||++|.++.+|||..+|+.+.|+. .+.+.|+.+|...+++. .+.....|.+++|+.|.+.
T Consensus 130 l~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~ 197 (251)
T PF00756_consen 130 LYLALRHPDLFGAVIAFSGALDPSPSLWGP--------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFG 197 (251)
T ss_dssp HHHHHHSTTTESEEEEESEESETTHCHHHH--------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTH
T ss_pred HHHHHhCccccccccccCccccccccccCc--------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCccc
Confidence 357899999999999999999999999986 56678999999988863 2345668999999999954
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=96.19 E-value=0.0021 Score=46.38 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=55.5
Q ss_pred eeccCCCceeeeccCCCccCCCCCc-----hHHHHHHhhcCC--ChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCcc
Q psy15347 3 CALKCPGKYLAVSAFAPICNPMQCQ-----WGRDAFKAYLGR--DELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTS 75 (101)
Q Consensus 3 iaLknP~~f~SvSAFAPI~nP~~~p-----WG~kaf~~YLG~--d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~ 75 (101)
++.++|++|+++.+.+|++++.... +.+.....+-.. +++.++..++..-+.+.. ...|+||-.|.+|.-.+
T Consensus 81 ~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~P~li~hG~~D~~Vp 159 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-IKPPVLIIHGENDPRVP 159 (213)
T ss_dssp HHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-GGSEEEEEEETTBSSST
T ss_pred hhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhcccccccccc-CCCCEEEEccCCCCccC
Confidence 3457999999999999999998764 222123333211 344455555555555521 45689999999998764
Q ss_pred c---ccccccccccccc
Q psy15347 76 V---RAMTVSGKSFQVT 89 (101)
Q Consensus 76 ~---~qLh~~~~~~~~~ 89 (101)
. .+|..+.+..|+.
T Consensus 160 ~~~s~~~~~~L~~~g~~ 176 (213)
T PF00326_consen 160 PSQSLRLYNALRKAGKP 176 (213)
T ss_dssp THHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 3 5566677766665
No 7
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=96.04 E-value=0.0023 Score=52.83 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=46.9
Q ss_pred CeeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcC--CCCCceEEeecCCCCC-ccc-
Q psy15347 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYD--GPPLELLIDQIGGHKV-TSV- 76 (101)
Q Consensus 1 L~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~--~~~~~ILIDqG~~D~F-l~~- 76 (101)
|+++|+||++|..|.+|||-.- |.. ..+.+ +.| ..+.+++.. ..++.|.|++|+.|.+ ++.
T Consensus 303 L~~al~~Pd~Fg~v~s~Sgs~w-----w~~-----~~~~~-~~~----l~~~l~~~~~~~~~lr~~i~~G~~E~~~~~~~ 367 (411)
T PRK10439 303 LYAGLHWPERFGCVLSQSGSFW-----WPH-----RGGQQ-EGV----LLEQLKAGEVSARGLRIVLEAGRREPMIMRAN 367 (411)
T ss_pred HHHHHhCcccccEEEEecccee-----cCC-----ccCCc-hhH----HHHHHHhcccCCCCceEEEeCCCCCchHHHHH
Confidence 4578999999999999999652 210 00111 112 233333321 2346799999998854 444
Q ss_pred ccccccccccccc
Q psy15347 77 RAMTVSGKSFQVT 89 (101)
Q Consensus 77 ~qLh~~~~~~~~~ 89 (101)
++|++.-+..|+.
T Consensus 368 ~~l~~~L~~~G~~ 380 (411)
T PRK10439 368 QALYAQLHPAGHS 380 (411)
T ss_pred HHHHHHHHHCCCc
Confidence 8888887777764
No 8
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.47 E-value=0.053 Score=42.28 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=54.2
Q ss_pred eeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCCh-------hhhhhcCHHHHHhhcCCCCCceEEeecCCCCCc
Q psy15347 2 ICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDE-------LVWKDYDATELVKVYDGPPLELLIDQIGGHKVT 74 (101)
Q Consensus 2 ~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~-------~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl 74 (101)
+..+|||++|..|=|||++-+.+. -|.+|+.+|- =.|..-|+-.| ..+ ..+.|++-+|.+|.||
T Consensus 117 nfvfrhP~lftkvialSGvYdard------ffg~yyddDv~ynsP~dylpg~~dp~~l-~rl--r~~~~vfc~G~e~~~L 187 (227)
T COG4947 117 NFVFRHPHLFTKVIALSGVYDARD------FFGGYYDDDVYYNSPSDYLPGLADPFRL-ERL--RRIDMVFCIGDEDPFL 187 (227)
T ss_pred hhheeChhHhhhheeecceeeHHH------hccccccCceeecChhhhccCCcChHHH-HHH--hhccEEEEecCccccc
Confidence 345899999999999999998874 3667776632 12444444433 333 3467999999999999
Q ss_pred cc-cccccccccccc
Q psy15347 75 SV-RAMTVSGKSFQV 88 (101)
Q Consensus 75 ~~-~qLh~~~~~~~~ 88 (101)
+. ++|-+.-..-||
T Consensus 188 ~~~~~L~~~l~dKqi 202 (227)
T COG4947 188 DNNQHLSRLLSDKQI 202 (227)
T ss_pred cchHHHHHHhccccc
Confidence 87 777774443343
No 9
>PRK10115 protease 2; Provisional
Probab=92.30 E-value=0.14 Score=44.76 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=54.0
Q ss_pred cCCCceeeeccCCCccCCCCC------chHHHHHHhhcCCCh-----hhhhhcCHHHHHhhcCCCCCceEEeecCCCCCc
Q psy15347 6 KCPGKYLAVSAFAPICNPMQC------QWGRDAFKAYLGRDE-----LVWKDYDATELVKVYDGPPLELLIDQIGGHKVT 74 (101)
Q Consensus 6 knP~~f~SvSAFAPI~nP~~~------pWG~kaf~~YLG~d~-----~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl 74 (101)
.+|++|+++-+-.|++|+..+ |-+..-+..| |+.. +.+++|++...|++. .-..+||-+|..|.=.
T Consensus 544 ~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~-G~p~~~~~~~~l~~~SP~~~v~~~--~~P~lLi~~g~~D~RV 620 (686)
T PRK10115 544 QRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEW-GNPQDPQYYEYMKSYSPYDNVTAQ--AYPHLLVTTGLHDSQV 620 (686)
T ss_pred cChhheeEEEecCCchhHhhhcccCCCCCChhHHHHh-CCCCCHHHHHHHHHcCchhccCcc--CCCceeEEecCCCCCc
Confidence 579999999999999998743 5222234444 7632 235678888888764 2224999999999865
Q ss_pred cc---cccccccccccc
Q psy15347 75 SV---RAMTVSGKSFQV 88 (101)
Q Consensus 75 ~~---~qLh~~~~~~~~ 88 (101)
+. .++..+.+..|+
T Consensus 621 ~~~~~~k~~a~Lr~~~~ 637 (686)
T PRK10115 621 QYWEPAKWVAKLRELKT 637 (686)
T ss_pred CchHHHHHHHHHHhcCC
Confidence 43 445555555554
No 10
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=81.74 E-value=1.6 Score=31.70 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=36.3
Q ss_pred eeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcC-CChhhhhhcCHHHHHhh----cCCCCCceEEeecCCCCCccc
Q psy15347 2 ICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLG-RDELVWKDYDATELVKV----YDGPPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 2 ~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG-~d~~~W~~yDa~~Lik~----~~~~~~~ILIDqG~~D~Fl~~ 76 (101)
.+++++|++|..+.++|+..--...-+ ..++..... .....|. ++++. ......+++|=+|++|..++.
T Consensus 111 ~~a~~~p~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~ 184 (212)
T TIGR01840 111 VLGCTYPDVFAGGASNAGLPYGEASSS-ISATPQMCTAATAASVC-----RLVRGMQSEYNGPTPIMSVVHGDADYTVLP 184 (212)
T ss_pred HHHHhCchhheEEEeecCCcccccccc-hhhHhhcCCCCCHHHHH-----HHHhccCCcccCCCCeEEEEEcCCCceeCc
Confidence 357899999999999887642211111 112222211 1122222 22222 112223478999999997754
No 11
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=80.91 E-value=0.4 Score=39.10 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=47.6
Q ss_pred CeeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc-ccc
Q psy15347 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV-RAM 79 (101)
Q Consensus 1 L~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~-~qL 79 (101)
|+.|++||++|+-|-+.||-+.=.. =. .+ +..+.|+.-+.-+.+... ..-++-.-|..+.|+.. ++|
T Consensus 192 L~agl~~Pe~FG~V~s~Sps~~~~~--~~-----~~--~~~~~~~~l~~~~a~~~~---~~~~l~~g~~~~~~~~pNr~L 259 (299)
T COG2382 192 LYAGLRHPERFGHVLSQSGSFWWTP--LD-----TQ--PQGEVAESLKILHAIGTD---ERIVLTTGGEEGDFLRPNRAL 259 (299)
T ss_pred HHHHhcCchhhceeeccCCccccCc--cc-----cc--cccchhhhhhhhhccCcc---ceEEeecCCccccccchhHHH
Confidence 4568999999999999999764221 00 00 112234333333333322 12466666777789987 999
Q ss_pred cccccccccc
Q psy15347 80 TVSGKSFQVT 89 (101)
Q Consensus 80 h~~~~~~~~~ 89 (101)
|+.++..|++
T Consensus 260 ~~~L~~~g~~ 269 (299)
T COG2382 260 AAQLEKKGIP 269 (299)
T ss_pred HHHHHhcCCc
Confidence 9988777654
No 12
>PRK10566 esterase; Provisional
Probab=79.48 E-value=1.7 Score=31.44 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=29.8
Q ss_pred hhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc---cccccccccccc
Q psy15347 43 VWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV---RAMTVSGKSFQV 88 (101)
Q Consensus 43 ~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~---~qLh~~~~~~~~ 88 (101)
.+..||+...+.+. .+.|+||-.|.+|...+. ++|.++.+..|+
T Consensus 171 ~~~~~~~~~~~~~i--~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~ 217 (249)
T PRK10566 171 PLAEWEVTHQLEQL--ADRPLLLWHGLADDVVPAAESLRLQQALRERGL 217 (249)
T ss_pred HHhhcChhhhhhhc--CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC
Confidence 36677776655543 235799999999998874 556555555554
No 13
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=67.83 E-value=9.9 Score=29.16 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=37.0
Q ss_pred eeccCCCceeeeccCCCccCCCCCchHHHHHHhhc-CC-ChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc
Q psy15347 3 CALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYL-GR-DELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 3 iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YL-G~-d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~ 76 (101)
++..+|++|.++..+|+........ ...++...- |. ....+. .++- .....-+..|.+|=+|++|.-+..
T Consensus 114 la~~~pd~faa~a~~sG~~~~~a~~-~~~a~~~m~~g~~~~p~~~-~~a~--~~~g~~~~~P~~v~hG~~D~tV~~ 185 (220)
T PF10503_consen 114 LACAYPDLFAAVAVVSGVPYGCAAS-GASALSAMRSGPRPAPAAA-WGAR--SDAGAYPGYPRIVFHGTADTTVNP 185 (220)
T ss_pred HHHhCCccceEEEeecccccccccC-cccHHHHhhCCCCCChHHH-HHhh--hhccCCCCCCEEEEecCCCCccCc
Confidence 5678999999999999875433221 011222221 21 111111 1111 111111346788899999986654
No 14
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=62.05 E-value=4.7 Score=36.32 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=42.4
Q ss_pred CCCceeeeccCCCccCCCCC------c--------hHHHHHHhhcCCChh---hhhhcCHHHHHhhcCCCCCceEEeecC
Q psy15347 7 CPGKYLAVSAFAPICNPMQC------Q--------WGRDAFKAYLGRDEL---VWKDYDATELVKVYDGPPLELLIDQIG 69 (101)
Q Consensus 7 nP~~f~SvSAFAPI~nP~~~------p--------WG~kaf~~YLG~d~~---~W~~yDa~~Lik~~~~~~~~ILIDqG~ 69 (101)
-|++|+++=|..|-+||-.+ | ||- -+ +++ --++|++-+.|+.. +-.+||+.+|.
T Consensus 548 ~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN-----P~--d~e~y~yikSYSPYdNV~a~--~YP~ilv~~Gl 618 (682)
T COG1770 548 APDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN-----PL--DPEYYDYIKSYSPYDNVEAQ--PYPAILVTTGL 618 (682)
T ss_pred ChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC-----cC--CHHHHHHHhhcCchhccccC--CCCceEEEccc
Confidence 48999999999999998755 2 541 11 222 23678887777752 34589999999
Q ss_pred CCCCc
Q psy15347 70 GHKVT 74 (101)
Q Consensus 70 ~D~Fl 74 (101)
.|.-.
T Consensus 619 ~D~rV 623 (682)
T COG1770 619 NDPRV 623 (682)
T ss_pred cCCcc
Confidence 99844
No 15
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=55.02 E-value=4 Score=28.86 Aligned_cols=30 Identities=13% Similarity=-0.119 Sum_probs=24.4
Q ss_pred CceEEeecCCCCCccc-ccccccccccccch
Q psy15347 61 LELLIDQIGGHKVTSV-RAMTVSGKSFQVTP 90 (101)
Q Consensus 61 ~~ILIDqG~~D~Fl~~-~qLh~~~~~~~~~~ 90 (101)
.+++|-.|+.|.++++ ..+.+..|..||..
T Consensus 167 Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v 197 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDV 197 (211)
T ss_dssp HEEEEEEETTSTTHHHHHHHHHHHHHTT-EE
T ss_pred CCeeeeccccccchHHHHHHHHHHHHCCCCE
Confidence 3799999999999876 88888888888764
No 16
>PRK04940 hypothetical protein; Provisional
Probab=46.36 E-value=32 Score=25.97 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCccCCCCCchHHHHHHhhcCCChhhhhhcCH---HHHHhhcCCCCCceEEeecCCCCCccccccc
Q psy15347 18 APICNPMQCQWGRDAFKAYLGRDELVWKDYDA---TELVKVYDGPPLELLIDQIGGHKVTSVRAMT 80 (101)
Q Consensus 18 API~nP~~~pWG~kaf~~YLG~d~~~W~~yDa---~~Lik~~~~~~~~ILIDqG~~D~Fl~~~qLh 80 (101)
|-+.||.-.||-- +.+|+|...+ ....+. .+|- ...+-.+++=..+.|+.|+-++-.
T Consensus 85 aVLiNPAv~P~~~--L~~~ig~~~~-y~~~~~~h~~eL~---~~~p~r~~vllq~gDEvLDyr~a~ 144 (180)
T PRK04940 85 QVIFNPNLFPEEN--MEGKIDRPEE-YADIATKCVTNFR---EKNRDRCLVILSRNDEVLDSQRTA 144 (180)
T ss_pred EEEECCCCChHHH--HHHHhCCCcc-hhhhhHHHHHHhh---hcCcccEEEEEeCCCcccCHHHHH
Confidence 4478999999864 8999997544 333322 2332 123445788889999998754433
No 17
>KOG1455|consensus
Probab=45.52 E-value=18 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=25.5
Q ss_pred cCCCCCceEEeecCCCCCccc---ccccccccccc
Q psy15347 56 YDGPPLELLIDQIGGHKVTSV---RAMTVSGKSFQ 87 (101)
Q Consensus 56 ~~~~~~~ILIDqG~~D~Fl~~---~qLh~~~~~~~ 87 (101)
.+...+|+||-.|++|..-.. ++|++-|+|.-
T Consensus 242 l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~D 276 (313)
T KOG1455|consen 242 LNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSD 276 (313)
T ss_pred cccccccEEEEecCCCcccCcHHHHHHHHhccCCC
Confidence 334567999999999998864 89999777754
No 18
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=44.02 E-value=42 Score=27.57 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=41.3
Q ss_pred eeccCCCceeeeccCCCccCCCCCc--h-------HHHHHHhhcCCChhhhh-------hcC--HHHHHhhcCCCCCceE
Q psy15347 3 CALKCPGKYLAVSAFAPICNPMQCQ--W-------GRDAFKAYLGRDELVWK-------DYD--ATELVKVYDGPPLELL 64 (101)
Q Consensus 3 iaLknP~~f~SvSAFAPI~nP~~~p--W-------G~kaf~~YLG~d~~~W~-------~yD--a~~Lik~~~~~~~~IL 64 (101)
+|.++|++++++-+.+|.++..... | -...|...+|.....++ .|. ...++. ..-+.|+|
T Consensus 282 ~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~--~~i~~PvL 359 (414)
T PRK05077 282 LAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLG--RRCPTPML 359 (414)
T ss_pred HHHhCCcCceEEEEECCccchhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhc--cCCCCcEE
Confidence 4567899999999999988643221 1 12334445664322221 111 001110 12356899
Q ss_pred EeecCCCCCccc
Q psy15347 65 IDQIGGHKVTSV 76 (101)
Q Consensus 65 IDqG~~D~Fl~~ 76 (101)
|-.|.+|.+.+.
T Consensus 360 iI~G~~D~ivP~ 371 (414)
T PRK05077 360 SGYWKNDPFSPE 371 (414)
T ss_pred EEecCCCCCCCH
Confidence 999999998875
No 19
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=42.26 E-value=5.8 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.4
Q ss_pred CCCCceEEeecCCCCCccccccc
Q psy15347 58 GPPLELLIDQIGGHKVTSVRAMT 80 (101)
Q Consensus 58 ~~~~~ILIDqG~~D~Fl~~~qLh 80 (101)
+.++.+|||.|++-.|+.++...
T Consensus 9 g~~i~~lvDTGA~~svis~~~~~ 31 (91)
T cd05484 9 GKPLKFQLDTGSAITVISEKTWR 31 (91)
T ss_pred CEEEEEEEcCCcceEEeCHHHHH
Confidence 45678999999999999875543
No 20
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=40.88 E-value=47 Score=23.18 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=27.4
Q ss_pred cCCCceeeeccCCCccCCCCCc-------hHHHHHHhhcCCChhhhhhcC
Q psy15347 6 KCPGKYLAVSAFAPICNPMQCQ-------WGRDAFKAYLGRDELVWKDYD 48 (101)
Q Consensus 6 knP~~f~SvSAFAPI~nP~~~p-------WG~kaf~~YLG~d~~~W~~yD 48 (101)
||-..-+.+-.|||.+||..+- |=.+-..-.||.+-..=|+-|
T Consensus 44 kh~~TgK~I~PmAps~Np~RftD~~kVEKwf~RNC~dvlgReCTa~EKgD 93 (98)
T PF09086_consen 44 KHAKTGKVIEPMAPSVNPKRFTDAAKVEKWFKRNCNDVLGRECTAQEKGD 93 (98)
T ss_dssp E-TTTS-EE--SSTTTSTTTTSSHHHHHHHHHHHHHHHHSS---HHHHHH
T ss_pred ccccCCCcccCcCCccChhhcCCHHHHHHHHHccchhhhcccCCHHHhcc
Confidence 4556678899999999999883 877888888887654444444
No 21
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.76 E-value=30 Score=25.72 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred CccCCCCCchHHHHHHhhcCCCh-hhh-hhcCHH-HH---HhhcC----CCCCceEEeecCCCCCccc
Q psy15347 19 PICNPMQCQWGRDAFKAYLGRDE-LVW-KDYDAT-EL---VKVYD----GPPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 19 PI~nP~~~pWG~kaf~~YLG~d~-~~W-~~yDa~-~L---ik~~~----~~~~~ILIDqG~~D~Fl~~ 76 (101)
=+.||.-.||.. +..|+|... ..| ++|..+ .. ++.+. ..+.+++|=.|+.|+.++-
T Consensus 85 vLiNPav~p~~~--l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~lvll~~~DEvLd~ 150 (187)
T PF05728_consen 85 VLINPAVRPYEL--LQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERYLVLLQTGDEVLDY 150 (187)
T ss_pred EEEcCCCCHHHH--HHHhhCccccCCCCccceechHhhhhcceEeccccCCCccEEEEEecCCcccCH
Confidence 567999888876 899999822 111 122211 11 22221 2345799999999998865
No 22
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=39.36 E-value=15 Score=31.77 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=45.9
Q ss_pred eeccCCCceeeeccCCCccCCCCCchHH-H----HHHhhcCC---ChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCc
Q psy15347 3 CALKCPGKYLAVSAFAPICNPMQCQWGR-D----AFKAYLGR---DELVWKDYDATELVKVYDGPPLELLIDQIGGHKVT 74 (101)
Q Consensus 3 iaLknP~~f~SvSAFAPI~nP~~~pWG~-k----af~~YLG~---d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl 74 (101)
++.+.| +|+++-|-+|++|=....... - ......+. +.+..++..+..-+++. +-|+||-.|..|.-.
T Consensus 490 ~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~LliHG~~D~~v 565 (620)
T COG1506 490 AATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNI---KTPLLLIHGEEDDRV 565 (620)
T ss_pred HHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCcccChHHHHhcChhhhhccc---CCCEEEEeecCCccC
Confidence 344566 888888877777654332111 0 01111111 23445555555555543 448999999999855
Q ss_pred cc---ccccccccccccc
Q psy15347 75 SV---RAMTVSGKSFQVT 89 (101)
Q Consensus 75 ~~---~qLh~~~~~~~~~ 89 (101)
+. .+|-.+-|..|+.
T Consensus 566 ~~~q~~~~~~aL~~~g~~ 583 (620)
T COG1506 566 PIEQAEQLVDALKRKGKP 583 (620)
T ss_pred ChHHHHHHHHHHHHcCce
Confidence 42 4555566665553
No 23
>PRK11460 putative hydrolase; Provisional
Probab=39.23 E-value=15 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=20.4
Q ss_pred CCceEEeecCCCCCccc---cccccccccccc
Q psy15347 60 PLELLIDQIGGHKVTSV---RAMTVSGKSFQV 88 (101)
Q Consensus 60 ~~~ILIDqG~~D~Fl~~---~qLh~~~~~~~~ 88 (101)
+.++||-.|++|+.++. +++....+..|+
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~ 179 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGG 179 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCC
Confidence 45899999999998874 444445555554
No 24
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=38.11 E-value=13 Score=27.05 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=30.3
Q ss_pred eeeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc
Q psy15347 2 ICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 2 ~iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~ 76 (101)
.+++++|+.|..+-++|+..-+.. .+. + ..+. ..+.||++-.|++|+.++.
T Consensus 121 ~~~l~~p~~~~gvv~lsG~~~~~~-~~~----------------~-----~~~~--~~~~pi~~~hG~~D~vvp~ 171 (216)
T PF02230_consen 121 YLALRYPEPLAGVVALSGYLPPES-ELE----------------D-----RPEA--LAKTPILIIHGDEDPVVPF 171 (216)
T ss_dssp HHHHCTSSTSSEEEEES---TTGC-CCH----------------C-----CHCC--CCTS-EEEEEETT-SSSTH
T ss_pred HHHHHcCcCcCEEEEeeccccccc-ccc----------------c-----cccc--cCCCcEEEEecCCCCcccH
Confidence 357899999999888887653321 111 0 0111 2367899999999999874
No 25
>PRK10162 acetyl esterase; Provisional
Probab=32.73 E-value=18 Score=28.25 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=25.7
Q ss_pred CceEEeecCCCCCccc-ccccccccccccch
Q psy15347 61 LELLIDQIGGHKVTSV-RAMTVSGKSFQVTP 90 (101)
Q Consensus 61 ~~ILIDqG~~D~Fl~~-~qLh~~~~~~~~~~ 90 (101)
.|++|-+|..|.+.++ ..+++..+.+||..
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v 279 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPC 279 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCE
Confidence 4799999999999987 88888888888753
No 26
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=32.44 E-value=33 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCCceEEeecCCCCCcccccccccccccccchhhceeee
Q psy15347 59 PPLELLIDQIGGHKVTSVRAMTVSGKSFQVTPILEDVWF 97 (101)
Q Consensus 59 ~~~~ILIDqG~~D~Fl~~~qLh~~~~~~~~~~~~~~~~~ 97 (101)
-+.|-||-||+.|+|=.-.+. --+.+++-.|-||.
T Consensus 141 l~tPtli~qGtrD~fGtr~~V----a~y~ls~~iev~wl 175 (213)
T COG3571 141 LKTPTLITQGTRDEFGTRDEV----AGYALSDPIEVVWL 175 (213)
T ss_pred CCCCeEEeecccccccCHHHH----HhhhcCCceEEEEe
Confidence 355899999999998754444 34566777777775
No 27
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.39 E-value=36 Score=23.98 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.8
Q ss_pred CCceEEeecCCCCCccc
Q psy15347 60 PLELLIDQIGGHKVTSV 76 (101)
Q Consensus 60 ~~~ILIDqG~~D~Fl~~ 76 (101)
+..+|||.|..+.|+..
T Consensus 32 ~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 32 PASVLIDSGATHSFISS 48 (135)
T ss_pred EEEEEEecCCCcEEccH
Confidence 45699999999999975
No 28
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=24.32 E-value=83 Score=22.36 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=15.1
Q ss_pred CCCceEEeecCCCCCccc
Q psy15347 59 PPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 59 ~~~~ILIDqG~~D~Fl~~ 76 (101)
-+.|+||-+|.+|.+.+.
T Consensus 219 i~~P~lii~g~~D~~vp~ 236 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPP 236 (278)
T ss_pred CCCCEEEEEeCCCcccCH
Confidence 356999999999998864
No 29
>COG1647 Esterase/lipase [General function prediction only]
Probab=23.63 E-value=71 Score=25.60 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=28.9
Q ss_pred HHHHhhcCCChhh----hhhcC--HH-------HHHhhcC----CCCCceEEeecCCCCCccc
Q psy15347 31 DAFKAYLGRDELV----WKDYD--AT-------ELVKVYD----GPPLELLIDQIGGHKVTSV 76 (101)
Q Consensus 31 kaf~~YLG~d~~~----W~~yD--a~-------~Lik~~~----~~~~~ILIDqG~~D~Fl~~ 76 (101)
+.+++|.|.+.+. .++|+ .. .|++... .-..|++|-||..|+.++.
T Consensus 135 ~~~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~ 197 (243)
T COG1647 135 RNAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPA 197 (243)
T ss_pred HHhhhccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCH
Confidence 6788899986544 23444 11 2233221 1245899999999998865
No 30
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=21.51 E-value=49 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCceeeeccCCCccCCCC
Q psy15347 8 PGKYLAVSAFAPICNPMQ 25 (101)
Q Consensus 8 P~~f~SvSAFAPI~nP~~ 25 (101)
-+.|.|||=|||.-.-.+
T Consensus 102 ~G~y~sCSLfSPm~~f~~ 119 (159)
T PRK10465 102 VSQYLSCSLMSPLDPSLS 119 (159)
T ss_pred CcceeEeeccCCcccccC
Confidence 468999999999877665
No 31
>PF09331 DUF1985: Domain of unknown function (DUF1985); InterPro: IPR015410 This domain is functionally uncharacterised; it is found in a set of Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.
Probab=21.16 E-value=55 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=10.2
Q ss_pred CCchHHHHHHhhc
Q psy15347 25 QCQWGRDAFKAYL 37 (101)
Q Consensus 25 ~~pWG~kaf~~YL 37 (101)
..|||+.+|..-+
T Consensus 127 ~yPWGr~sF~~~~ 139 (142)
T PF09331_consen 127 NYPWGRYSFDMLM 139 (142)
T ss_pred cCCcHHHHHHHHH
Confidence 5699999997654
No 32
>COG0400 Predicted esterase [General function prediction only]
Probab=20.55 E-value=35 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=39.2
Q ss_pred eeccCCCceeeeccCCCccCCCCCchHHHHHHhhcCCChhhhhhcCHHHHHhhcCCCCCceEEeecCCCCCccc---ccc
Q psy15347 3 CALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLIDQIGGHKVTSV---RAM 79 (101)
Q Consensus 3 iaLknP~~f~SvSAFAPI~nP~~~pWG~kaf~~YLG~d~~~W~~yDa~~Lik~~~~~~~~ILIDqG~~D~Fl~~---~qL 79 (101)
+.+++|+.|+-+=+|+|..-+...+ .. .....+||+--|..|+.++. .+|
T Consensus 116 ~~l~~~~~~~~ail~~g~~~~~~~~-------------------------~~--~~~~~pill~hG~~Dpvvp~~~~~~l 168 (207)
T COG0400 116 LGLTLPGLFAGAILFSGMLPLEPEL-------------------------LP--DLAGTPILLSHGTEDPVVPLALAEAL 168 (207)
T ss_pred HHHhCchhhccchhcCCcCCCCCcc-------------------------cc--ccCCCeEEEeccCcCCccCHHHHHHH
Confidence 4578888888888888877665520 11 12356899999999997653 555
Q ss_pred ccccccccc
Q psy15347 80 TVSGKSFQV 88 (101)
Q Consensus 80 h~~~~~~~~ 88 (101)
.+.-++.|.
T Consensus 169 ~~~l~~~g~ 177 (207)
T COG0400 169 AEYLTASGA 177 (207)
T ss_pred HHHHHHcCC
Confidence 554444444
No 33
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=20.30 E-value=38 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=18.6
Q ss_pred CCCCceEEeecCCCCCcccccccc
Q psy15347 58 GPPLELLIDQIGGHKVTSVRAMTV 81 (101)
Q Consensus 58 ~~~~~ILIDqG~~D~Fl~~~qLh~ 81 (101)
+.....|+|.|.+|..+++.++..
T Consensus 7 g~~~~~llDTGAd~Tvi~~~~~p~ 30 (87)
T cd05482 7 GKLFEGLLDTGADVSIIAENDWPK 30 (87)
T ss_pred CEEEEEEEccCCCCeEEcccccCC
Confidence 344578999999999998766653
Done!