RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15347
(101 letters)
>gnl|CDD|178061 PLN02442, PLN02442, S-formylglutathione hydrolase.
Length = 283
Score = 94.5 bits (235), Expect = 4e-25
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 4 ALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLEL 63
LK P KY +VSAFAPI NP+ C WG+ AF YLG D+ W++YDATELV ++ +
Sbjct: 161 YLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATI 220
Query: 64 LIDQ 67
LIDQ
Sbjct: 221 LIDQ 224
>gnl|CDD|131868 TIGR02821, fghA_ester_D, S-formylglutathione hydrolase. This model
describes a protein family from bacteria, yeast, and
human, with a conserved critical role in formaldehyde
detoxification as S-formylglutathione hydrolase (EC
3.1.2.12). Members in eukaryotes such as the human
protein are better known as esterase D (EC 3.1.1.1), an
enzyme with broad specificity, although
S-formylglutathione hydrolase has now been demonstrated
as well [Cellular processes, Detoxification].
Length = 275
Score = 86.4 bits (214), Expect = 5e-22
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPP 60
++ ALK P ++ +VSAFAPI P +C WG+ AF AYLG DE W+ YDA+ LV
Sbjct: 153 LVIALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHS 212
Query: 61 LELLIDQ 67
+LIDQ
Sbjct: 213 -TILIDQ 218
>gnl|CDD|223700 COG0627, COG0627, Predicted esterase [General function prediction
only].
Length = 316
Score = 54.4 bits (131), Expect = 3e-10
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 21/89 (23%)
Query: 1 MICALKCPGKYLAVSAFAPICNP---------MQCQWGRDAFKAYLGRDELV-WKDYDAT 50
+ ALK P ++ + S+F+ I +P M WG AF A LG D W++ D
Sbjct: 167 LKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQENDPL 226
Query: 51 ELVK-----------VYDGPPLELLIDQI 68
L++ VY G P ELLID
Sbjct: 227 SLIEKLVANANTRIWVYGGSPPELLIDNG 255
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 45.5 bits (108), Expect = 5e-07
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVK--VYDG 58
+ ALK P + +VS+F+PI NP WG + A W++ D L +
Sbjct: 124 LYLALKYPDLFGSVSSFSPILNPSNSMWGPEDDPA--------WQEGDPVLLAVALSANN 175
Query: 59 PPLELLIDQ 67
L + +D
Sbjct: 176 TRLRIYLDV 184
>gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of
PolI) [DNA replication, recombination, and repair].
Length = 310
Score = 28.4 bits (64), Expect = 0.50
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 26 CQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLID 66
Q G+ K D E+ + + G E LID
Sbjct: 148 LQLVSPNVLVINGKKGEPEKFLDLEEVEEKFKGLTPEQLID 188
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 28.3 bits (63), Expect = 0.71
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 28 WGRDAFKAYLGRDELVWKDYDATE-------LVKVYDGPPLELLIDQIGGH 71
WG A+ LGR E+V + D L K+ G + LLID+I +
Sbjct: 62 WGYIAYS--LGRYEIV-EISDENLTVPDIEVLRKLLQGERVLLLIDEIADY 109
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase
inhibitor.
Length = 530
Score = 26.1 bits (57), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 30 RDAFKAYLGRDELVWKDYDATELVKVY 56
++ FKAYLGR W+ Y T ++K +
Sbjct: 427 KENFKAYLGRP---WRKYSRTVIIKSF 450
>gnl|CDD|133150 cd05483, retropepsin_like_bacteria, Bacterial aspartate
proteases, retropepsin-like protease family. This
family of bacteria aspartate proteases is a subfamily
of retropepsin-like protease family, which includes
enzymes from retrovirus and retrotransposons. While
fungal and mammalian pepsin-like aspartate proteases
are bilobal proteins with structurally related N- and
C-termini, this family of bacteria aspartate proteases
is half as long as their fungal and mammalian
counterparts. The monomers are structurally related to
one lobe of the pepsin molecule and function as
homodimers. The active site aspartate occurs within a
motif (Asp-Thr/Ser-Gly), as it does in pepsin. In
aspartate peptidases, Asp residues are ligands of an
activated water molecule in all examples where
catalytic residues have been identified. This group of
aspartate proteases is classified by MEROPS as the
peptidase family A2 (retropepsin family, clan AA),
subfamily A2A.
Length = 96
Score = 24.9 bits (55), Expect = 5.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 67 QIGGHKVTSVRAMTVSGKSFQVTPIL 92
QIGG + +V A+ + G + V +L
Sbjct: 65 QIGGITLRNVPAVVLPGDALGVDGLL 90
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor.
Length = 548
Score = 25.6 bits (56), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 30 RDAFKAYLGRDELVWKDYDATELVKVYDG 58
+ +FK YLGR WK+Y T +++ Y
Sbjct: 445 KGSFKTYLGRP---WKEYSRTVVMQSYID 470
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 25.6 bits (56), Expect = 5.9
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 77 RAMTVS----GKSFQVTPILE 93
R MTVS K F+V PILE
Sbjct: 173 REMTVSILETEKGFEVLPILE 193
>gnl|CDD|211904 TIGR04108, HutX, putative heme utilization carrier protein HutX.
Members of this protein family are HutX, found paired
with HutW in some heme utilization loci although not
shown directly to be necessary for heme utilization.
This protein is homologous to the heme carrier protein
HemS, while its partner HutW is homologous to (but does
not complement) HemN, the radical SAM enzyme
oxygen-independent coproporphyrinogen III oxidase
involved in heme biosynthesis.
Length = 153
Score = 25.3 bits (56), Expect = 6.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 29 GRDAFKAYLGRDE 41
G FK YLGRDE
Sbjct: 126 GEAMFKVYLGRDE 138
>gnl|CDD|226244 COG3721, HugX, Putative heme iron utilization protein [Inorganic
ion transport and metabolism].
Length = 176
Score = 25.2 bits (55), Expect = 6.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 29 GRDAFKAYLGRDE 41
G FK YLGRDE
Sbjct: 143 GEAMFKIYLGRDE 155
>gnl|CDD|147046 pfam04693, DDE_Tnp_2, Archaeal putative transposase ISC1217.
Length = 327
Score = 25.3 bits (55), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 52 LVKVYDGPPLELLIDQIGGHKVTSVRAMTVS 82
+ KV P+ L+ID HK+ + RA VS
Sbjct: 76 VKKVVIDHPVVLIIDDTHDHKLYA-RAEPVS 105
>gnl|CDD|238938 cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of
chlorophyllide (chlide) reductase (BchY). Chlide
reductase participates in photosynthetic pigment
synthesis playing a role in the conversion of
chlorophylls(Chl) into bacteriochlorophylls (BChl).
Chlide reductase catalyzes the reduction of the B-ring
of the tetrapyrolle. Chlide reductase is a three subunit
enzyme (subunits are designated BchX, BchY and BchZ).
The similarity between these three subunits and the
subunits for nitrogenase suggests that BchX serves as an
electron donor for the BchY-BchY catalytic subunits.
Length = 416
Score = 25.2 bits (55), Expect = 7.5
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 58 GPPLELLIDQIGGHKVTSVRAMTVSGKS 85
G ELL QI G +V VR S
Sbjct: 107 GVAEELLPKQIDGVRVILVRGPAFPIHS 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.463
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,077,885
Number of extensions: 411214
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 15
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)