RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15347
(101 letters)
>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma,
genetic marker, cytoplasm, cytoplasmic vesicle,
polymorphism, serine esterase; 1.50A {Homo sapiens}
Length = 282
Score = 84.7 bits (209), Expect = 2e-21
Identities = 44/67 (65%), Positives = 51/67 (76%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPP 60
+ICALK PGKY +VSAFAPICNP+ C WG+ AF YLG D+ WK YDAT LVK Y G
Sbjct: 156 LICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQ 215
Query: 61 LELLIDQ 67
L++LIDQ
Sbjct: 216 LDILIDQ 222
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 78.8 bits (194), Expect = 2e-19
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPP 60
+ AL+ P +Y +VSAF+PI NP+ C WG+ AF AYLG+D W++YDA+ L++
Sbjct: 156 LTIALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMR-AAKQY 214
Query: 61 LELLIDQ 67
+ L+DQ
Sbjct: 215 VPALVDQ 221
>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A
{Pseudoalteromonas haloplanktis}
Length = 280
Score = 78.8 bits (194), Expect = 2e-19
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELV-KVYDGP 59
++ ALK P Y++ SAF+PI NP+ C WG AF YLG D+ W YD+ +L+ K
Sbjct: 154 LMIALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSN 213
Query: 60 PLELLIDQ 67
L +L+ Q
Sbjct: 214 YLPMLVSQ 221
>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family,
catalytic triad, kinetics, proposed reaction mechanism;
HET: MSE; 2.01A {Agrobacterium tumefaciens}
Length = 278
Score = 68.1 bits (166), Expect = 3e-15
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPP 60
M ALK P ++ + SAFAPI P W A + YLG D W+ YDA LV+ P
Sbjct: 155 MTIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFP 214
Query: 61 LELLIDQ 67
E LIDQ
Sbjct: 215 -EFLIDQ 220
>3c6b_A FGH, S-formylglutathione hydrolase; cysteine sulfenic acid, serine
hydrolase, thioesterase, formaldehyde, organophosphate,
cytoplasm; HET: SDP; 2.17A {Saccharomyces cerevisiae}
PDB: 1pv1_A
Length = 299
Score = 56.0 bits (134), Expect = 7e-11
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 1 MICALKC--PGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDG 58
+ LK +Y + SAFAPI NP G+ AFK YLG ++ W+ YD L+K
Sbjct: 168 ICGYLKGYSGKRYKSCSAFAPIVNPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIKNIRH 227
Query: 59 P-PLELLIDQ 67
+LI
Sbjct: 228 VGDDRILIHV 237
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 50.9 bits (122), Expect = 3e-09
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 1 MICALKCPGKYLAVSAFAPI-----CNPMQCQWGRDAFKAYLGRDELVWK--DYDATELV 53
AL ++ ++F+ +P G A+ + + W Y L
Sbjct: 132 FKLALT-TNRFSHAASFSGALSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLA 190
Query: 54 KVYDGPPLELLIDQ 67
K D +L
Sbjct: 191 KKSDKKT-KLWAWC 203
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; 1.50A {Mycobacterium tuberculosis} SCOP:
c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Length = 280
Score = 49.8 bits (119), Expect = 8e-09
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQW------------GRDAFKAYLGRDELVWKDYD 48
+I A P ++ ++ + NP + W G +A + + WK D
Sbjct: 129 LILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRND 188
Query: 49 ATELVKVYDGPPLELLIDQ 67
+ + +
Sbjct: 189 PMVQIPRLVANNTRIWVYC 207
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
SCOP: c.69.1.3
Length = 304
Score = 44.9 bits (106), Expect = 5e-07
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 1 MICALKCPGKYLAVSAFAPICNPMQCQW------------GRDAFKAYLGRDELVWKDYD 48
+ A+ P +++ A + + +P Q G A + +++ W+ D
Sbjct: 134 LTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRND 193
Query: 49 ATELVKVYDGPPLELLID 66
V + +
Sbjct: 194 PLLNVGKLIANNTRVWVY 211
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 27.2 bits (61), Expect = 0.78
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 64 LIDQIGGHKVTSVRAMTVSGKSFQVTP-ILED 94
+++ I + V +R T GK+ QV IL+D
Sbjct: 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDD 100
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 25.5 bits (56), Expect = 3.3
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 55 VYDGPPLELLIDQIGGHKVTSVRAMTVSGKSFQVTP 90
+ DG LE ++ S R MTV +++ P
Sbjct: 252 IMDGETLEPK-------QIVSTRGMTVDTQTYHPEP 280
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 24.7 bits (54), Expect = 6.6
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 55 VYDGPPLELLIDQIGGHKVTSVRAMTVSGKSFQVTP 90
+ DG LE K+ S R MT + + P
Sbjct: 270 IMDGETLEPK-------KIQSTRGMTYDEQEYHPEP 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 6.8
Identities = 11/90 (12%), Positives = 20/90 (22%), Gaps = 26/90 (28%)
Query: 7 CPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDGPPLELLID 66
+S A W WK + +L + +E ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN-------------WKHVNCDKLTTI-----IESSLN 364
Query: 67 QIGGHKVTSVRAMTVSGKSFQVTPILEDVW 96
+ + R M V P
Sbjct: 365 VL---EPAEYRKMF---DRLSVFP--PSAH 386
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core
flanked by 2 SETS of 3 helices and another 2 SETS of
helices; 2.05A {Escherichia coli O157}
Length = 164
Score = 24.5 bits (53), Expect = 7.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 29 GRDAFKAYLGRDE 41
G K +LGRD+
Sbjct: 129 GSAMLKIFLGRDD 141
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 24.3 bits (53), Expect = 8.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 61 LELLIDQIGGHKVTSVRAMTVSGKSFQ 87
+ L+D +GG V + +T F
Sbjct: 163 FKDLVDAVGGITVYNDIDLTEVNSKFV 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.463
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,620,978
Number of extensions: 83541
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 15
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)