RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15347
         (101 letters)



>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 299

 Score = 46.8 bits (110), Expect = 4e-08
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 1   MICALK--CPGKYLAVSAFAPICNPMQCQWGRDAFKAYLGRDELVWKDYDATELVKVYDG 58
           +   LK     +Y + SAFAPI NP    WG+ AFK YLG ++  W+ YD   L+K    
Sbjct: 168 ICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRH 227

Query: 59  P-PLELLIDQ 67
                +LI  
Sbjct: 228 VGDDRILIHV 237


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
          type 2 [TaxId: 11060]}
          Length = 305

 Score = 24.1 bits (51), Expect = 4.1
 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 66 DQIGGHKVTSVRAMTVSGKSFQVTP-ILEDVW 96
          D     ++T +     +GK+ +  P I+ +  
Sbjct: 4  DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35


>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 291

 Score = 23.6 bits (50), Expect = 7.0
 Identities = 8/42 (19%), Positives = 12/42 (28%)

Query: 54  KVYDGPPLELLIDQIGGHKVTSVRAMTVSGKSFQVTPILEDV 95
            V    P   LID     +         +G   +   +  DV
Sbjct: 220 GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDV 261


>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
           IRBP {African clawed frog (Xenopus laevis) [TaxId:
           8355]}
          Length = 302

 Score = 23.1 bits (49), Expect = 9.3
 Identities = 4/32 (12%), Positives = 10/32 (31%)

Query: 64  LIDQIGGHKVTSVRAMTVSGKSFQVTPILEDV 95
             D      V  +  +  +G  +    ++ D 
Sbjct: 249 FGDTQLSVTVPIINFIDSNGDYWLGGGVVPDA 280


>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
          {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 289

 Score = 23.0 bits (48), Expect = 9.4
 Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 59 PPLELLIDQIGG--HKVTSVRAMTVSGKSFQVTP 90
          PP +  +++IGG   +V+ +        +++  P
Sbjct: 10 PPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKP 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,011
Number of extensions: 16596
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)