BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15348
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 72 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 129
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 130 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 183
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 184 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 241
Query: 251 IIESLVNGALPK-DNY 265
IES V +P+ D Y
Sbjct: 242 GIESEVVAGIPRTDQY 257
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 71 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 128
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 129 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 182
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 183 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 240
Query: 251 IIESLVNGALPKDN 264
IES V +P+ +
Sbjct: 241 GIESEVVAGIPRTD 254
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 73 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 130
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 131 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 184
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 185 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 242
Query: 251 IIESLVNGALPKDN 264
IES V +P+ +
Sbjct: 243 GIESEVVAGIPRTD 256
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 22 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 79
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 80 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 133
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 134 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 191
Query: 251 IIESLVNGALPKDN 264
IES V +P+ +
Sbjct: 192 GIESEVVAGIPRTD 205
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC H + S P C T PKC
Sbjct: 134 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKC 191
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 192 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 245
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 246 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 303
Query: 251 IIESLVNGALPKDN 264
IES V +P+ +
Sbjct: 304 GIESEVVAGIPRTD 317
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G + W + ++GLV+GG + S+ GC+P S PPC A+ + P C T PKC
Sbjct: 77 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPC-EAHVNGARPPC-TGEGDTPKC 134
Query: 140 HTRCTNDNYGRGFFQDK-YQINGLGLYFDPHF--------GPFWPAFWRSFCTKYTRPLF 190
C Y + QDK Y N + GP AF + Y+ L
Sbjct: 135 SKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-----SVYSDFLL 188
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G V+ E++ ++I+GWG ENG PYW + +++ +GD G KILRG++
Sbjct: 189 YKSGVYQHVTG--EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 246
Query: 251 IIESLVNGALPK-DNY 265
IES V +P+ D Y
Sbjct: 247 GIESEVVAGIPRTDQY 262
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 86 SSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 145
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC C
Sbjct: 77 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCSKTC-E 133
Query: 146 DNYGRGFFQDKY--------QINGLGLYFDPH-FGPFWPAFWRSFCTKYTRPLFQTNGRV 196
Y + +DK+ N + + + GP AF + Y+ L +G
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF-----SVYSDFLLYKSGVY 188
Query: 197 YAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLV 256
V S EI+ ++I+GWG ENG PYW + +++ +GD G KILRG++ IES +
Sbjct: 189 QHV--SGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEI 246
Query: 257 NGALP 261
+P
Sbjct: 247 VAGMP 251
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 77 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 134
Query: 140 HTRCTNDNYGRGFFQDK------YQINGLGLYFDPHF---GPFWPAFWRSFCTKYTRPLF 190
+ C Y + +DK Y ++ GP AF T ++ L
Sbjct: 135 NKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF-----TVFSDFLT 188
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G VY A +++ ++I+GWG ENG PYW + +++ +GD G KILRG N
Sbjct: 189 YKSG-VYKHEA-GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHC 246
Query: 251 IIESLVNGALPK 262
IES + +P+
Sbjct: 247 GIESEIVAGIPR 258
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 71 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 128
Query: 140 HTRCTNDNYGRGFFQDK------YQINGLGLYFDPHF---GPFWPAFWRSFCTKYTRPLF 190
+ C Y + +DK Y ++ GP AF T ++ L
Sbjct: 129 NKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF-----TVFSDFLT 182
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G VY A +++ ++I+GWG ENG PYW + +++ +GD G KILRG N
Sbjct: 183 YKSG-VYKHEA-GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHC 240
Query: 251 IIESLVNGALPK 262
IES + +P+
Sbjct: 241 GIESEIVAGIPR 252
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C+ G S W + ++GLV+GG ++S+ GC P + PPC H + + P C T PKC
Sbjct: 133 CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH-HVNGARPPC-TGEGDTPKC 190
Query: 140 HTRCTNDNYGRGFFQDK------YQINGLGLYFDPHF---GPFWPAFWRSFCTKYTRPLF 190
+ C Y + +DK Y ++ GP AF T ++ L
Sbjct: 191 NKMCEA-GYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF-----TVFSDFLT 244
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G VY A +++ ++I+GWG ENG PYW + +++ +GD G KILRG N
Sbjct: 245 YKSG-VYKHEA-GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHC 302
Query: 251 IIESLVNGALPK 262
IES + +P+
Sbjct: 303 GIESEIVAGIPR 314
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 86 SSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 145
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC+ C
Sbjct: 29 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCNKTC-E 85
Query: 146 DNYGRGFFQDKY--------QINGLGLYFDPH-FGPFWPAFWRSFCTKYTRPLFQTNGRV 196
Y + +DK+ N + + + GP AF + Y+ L +G
Sbjct: 86 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF-----SVYSDFLLYKSGVY 140
Query: 197 YAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLV 256
V S EI+ ++I+GWG ENG PYW + +++ +GD G KILRG++ IES +
Sbjct: 141 QHV--SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEI 198
Query: 257 NGALP 261
+P
Sbjct: 199 VAGMP 203
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 86 SSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTN 145
S W + K+GLV+GG ++S+ GC+P S PPC H + S P C T PKC C
Sbjct: 77 SGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCSKTC-E 133
Query: 146 DNYGRGFFQDKY--------QINGLGLYFDPH-FGPFWPAFWRSFCTKYTRPLFQTNGRV 196
Y + +DK+ N + + + GP AF + Y+ L +G
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF-----SVYSDFLLYKSGVY 188
Query: 197 YAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLV 256
V S EI+ ++I+GWG ENG PYW + +++ +GD G KILRG++ IES +
Sbjct: 189 QHV--SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEI 246
Query: 257 NGALP 261
+P
Sbjct: 247 VAGMP 251
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKC 139
C GI W + K G+VTG + ++ GC+P FP C H + P C + P+C
Sbjct: 72 CEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEH-HTKGKYPPCGSKIYKTPRC 130
Query: 140 HTRCTNDNYGRGFFQDKYQ-INGLGLYFDPH--------FGPFWPAFWRSFCTKYTRPLF 190
C Y + QDK++ + + D +GP F T Y L
Sbjct: 131 KQTCQK-KYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGF-----TVYEDFLN 184
Query: 191 QTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA 250
+G ++ E + ++I+GWG EN PYW I +++ E +G+ G +I+RGR+E
Sbjct: 185 YKSGIYKHITG--ETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDEC 242
Query: 251 IIESLV 256
IES V
Sbjct: 243 SIESEV 248
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTS-EPECKTLATPQPK 138
C+ G WA+ GLV+ CQP FP C+H + + + P C PK
Sbjct: 162 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 214
Query: 139 CHTRCTNDNYGRGFFQD--KYQINGLGLYFDPHF--GPFWPAFWRSFCTKYTRPLFQTNG 194
C+ C + ++ Y + G Y F GPF AF N
Sbjct: 215 CNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF------DVYEDFIAYNS 268
Query: 195 RVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIES 254
VY S + + V++VGWG NG PYW I +++ ++G G I RG +E IE
Sbjct: 269 GVYH-HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 327
Query: 255 LVNGALP 261
+ +P
Sbjct: 328 GGSAGIP 334
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTS-EPECKTLATPQPK 138
C+ G WA+ GLV+ CQP FP C+H + + + P C PK
Sbjct: 139 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 191
Query: 139 CHTRCTNDNYGRGFFQD--KYQINGLGLYFDPHF--GPFWPAFWRSFCTKYTRPLFQTNG 194
C+ C + ++ Y + G Y F GPF AF N
Sbjct: 192 CNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF------DVYEDFIAYNS 245
Query: 195 RVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIES 254
VY S + + V++VGWG NG PYW I +++ ++G G I RG +E IE
Sbjct: 246 GVYH-HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 304
Query: 255 LVNGALP 261
+ +P
Sbjct: 305 GGSAGIP 311
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 80 CSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTS-EPECKTLATPQPK 138
C+ G WA+ GLV+ CQP FP C+H + + + P C PK
Sbjct: 140 CNGGDPDRAWAYFSSTGLVS-------DYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPK 192
Query: 139 CHTRCTNDNYGRGFFQD--KYQINGLGLYFDPHF--GPFWPAFWRSFCTKYTRPLFQTNG 194
C C + ++ Y + G Y F GPF AF N
Sbjct: 193 CDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF------DVYEDFIAYNS 246
Query: 195 RVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIES 254
VY S + + V++VGWG NG PYW I +++ ++G G I RG +E IE
Sbjct: 247 GVYH-HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 305
Query: 255 LVNGALP 261
+ +P
Sbjct: 306 GGSAGIP 312
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 211 VKIVGWGEE--NGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 261
V +VG+G++ G YW + +++G Q+G+ G +I RG +E IES+ A+P
Sbjct: 382 VLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIP 434
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 248
V VG+GEENG PYW + +++G Q+G G I RG+N
Sbjct: 168 VLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN 205
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG+KG I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG+KG I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 264 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 300
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A V VG+GE G +W I +++GE +G G IK+ R +N
Sbjct: 144 FYSKGVYYDESCNSDNLNHA-VLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNN 202
Query: 250 A 250
A
Sbjct: 203 A 203
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 166 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 168 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 204
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 169 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 205
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
V +VG+G+ NG+ YW + +++G FG++G I++ R +
Sbjct: 167 VLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A + VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 243 FYSKGVYYDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN 301
Query: 250 A 250
A
Sbjct: 302 A 302
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A + VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 143 FYSKGVYYDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN 201
Query: 250 A 250
A
Sbjct: 202 A 202
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A + VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 142 FYSKGVYYDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN 200
Query: 250 A 250
A
Sbjct: 201 A 201
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A + VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 144 FYSKGVYYDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN 202
Query: 250 A 250
A
Sbjct: 203 A 203
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y S +++ + +A + VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 146 FYSKGVYYDESCNSDNLNHAVL-AVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN 204
Query: 250 A 250
A
Sbjct: 205 A 205
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y + S++ + +A V VG+G + G +W I +++GE +G+KG I + R +N
Sbjct: 144 FYSKGVYYDENCSSDNLNHA-VLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNN 202
Query: 250 A 250
A
Sbjct: 203 A 203
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 248
V IVG+G ENG+ YW + +++G+ +G G KI R N
Sbjct: 280 VLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNAN 317
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 211 VKIVGWGEEN--GRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 261
V +VG+G ++ G YW + +++G +G+ G +I RG +E IES+ A P
Sbjct: 383 VLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 435
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+ + PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 164 VLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 211 VKIVGWGEEN--GRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALP 261
V +VG+G ++ G YW + +++G +G+ G +I RG +E IES+ A P
Sbjct: 13 VLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 65
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+ + + PYW I +++ +G+ G I+I +G N+ ++ V+ A+
Sbjct: 164 VLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 186 TRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKIL 244
T L G +YA + + V + GWG +G YW + +++GE +G++G ++I+
Sbjct: 158 TERLANYTGGIYAEYQDTTYINH-VVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIV 215
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 186 TRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKIL 244
T L G +YA + + V + GWG +G YW + +++GE +G++G ++I+
Sbjct: 193 TERLANYTGGIYAEYQDTTYINH-VVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIV 250
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 190 FQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
F + G Y + S++ + +A V VG+G + G +W I +++GE +G+ G I + R +N
Sbjct: 144 FYSAGVYYDENCSSDALNHA-VLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNN 202
Query: 250 A 250
A
Sbjct: 203 A 203
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V IVG+G E+G YW +++GE +G G I+I R
Sbjct: 170 VLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQR 204
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 200 SASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
+ S I A + +VG+G EN + +W + +++G+ +G+ G I+ R
Sbjct: 152 TGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAER 197
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 210 TVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
V +VG+G+ + P+W I +++G +G+KG + RG + ++ + A+
Sbjct: 162 AVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E +G YW + +++GE++G G +K+
Sbjct: 236 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMA 294
Query: 245 RGR 247
+ R
Sbjct: 295 KDR 297
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 196 VYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
+Y + + V VG+G + G YW + +++G +G++G I+++R R
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNR 291
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V IVG+G ++G+ YW + +++G+ +G++G I + R
Sbjct: 160 VVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMER 194
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 211 VKIVGWGEE-NGRPYWTIVSTFGEQFGDKGTIKILRG 246
V IVG+G +G YWT+ +++G ++G+KG I++ RG
Sbjct: 164 VAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERG 200
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V IVG+G E G YW + +++G +G++G ++I R
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V IVG+G E G YW + +++G +G++G ++I R
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V IVG+G E G YW + +++ +G++G ++ILR
Sbjct: 164 VTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILR 198
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 184 KYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKI 243
K R +GR + Y V IVG+G G YW + +++ +GD G
Sbjct: 146 KDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYF 205
Query: 244 LRGRNEAIIES 254
G N +IE
Sbjct: 206 QAGNNLMMIEQ 216
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 211 VKIVGWG-EENGRPYWTIVSTFGEQFGDKGTIKILR 245
V +VG+G E+G+ YWT+ +++G +G++G I++ +
Sbjct: 169 VAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEK 204
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
+ IVG+G E G YW + +++ +G++G ++ILR
Sbjct: 164 IVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILR 198
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V +VG+G +NG+ YW + +++G +G+ G + +R
Sbjct: 278 VLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVR 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 240 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 298
Query: 245 RGR 247
+ R
Sbjct: 299 KDR 301
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 145 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 203
Query: 245 RGR 247
+ R
Sbjct: 204 KDR 206
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 144 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
Query: 245 RGR 247
+ R
Sbjct: 203 KDR 205
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 144 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
Query: 245 RGR 247
+ R
Sbjct: 203 KDR 205
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 145 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 203
Query: 245 RGR 247
+ R
Sbjct: 204 KDR 206
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 144 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
Query: 245 RGR 247
+ R
Sbjct: 203 KDR 205
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 182 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 240
Query: 245 RGR 247
+ R
Sbjct: 241 KDR 243
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 144 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
Query: 245 RGR 247
+ R
Sbjct: 203 KDR 205
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG----EENGRPYWTIVSTFGEQFGDKGTIKIL 244
LF G + S+E + + V +VG+G E + YW + +++GE++G G +K+
Sbjct: 144 LFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMA 202
Query: 245 RGR 247
+ R
Sbjct: 203 KDR 205
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 163 GLYFDPHF----GPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIV 214
G+YF P F P+W F R TR GR + A+ E +AY T +V
Sbjct: 334 GVYFVPAFVGLGAPYWDQFARGIIIGITR----GTGREHLARATLEAIAYLTRDVV 385
>pdb|2WEE|A Chain A, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2WEE|B Chain B, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2YES|A Chain A, Crystal Structure Of Rv0371c Complex With Manganese From
Mycobacterium Tuberculosis H37rv
pdb|2YES|B Chain B, Crystal Structure Of Rv0371c Complex With Manganese From
Mycobacterium Tuberculosis H37rv
Length = 197
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 195 RVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQ---FGDKGTIKILRGRNEAI 251
R+ V + EI+ + + + G P+W + FGE GDKG K++ +
Sbjct: 116 RIIDVGPATEIM------VCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHPV 169
Query: 252 IESLVNGALPKD 263
E V+G +P D
Sbjct: 170 RELAVDGXVPLD 181
>pdb|2WE9|A Chain A, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
pdb|2WE9|B Chain B, Crystal Structure Of Rv0371c From Mycobacterium
Tuberculosis H37rv
Length = 197
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 195 RVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQ---FGDKGTIKILRGRNEAI 251
R+ V + EI + + + G P+W + FGE GDKG K++ +
Sbjct: 116 RIIDVGPATEI------XVCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHPV 169
Query: 252 IESLVNGALPKD 263
E V+G +P D
Sbjct: 170 RELAVDGCVPLD 181
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 189 LFQTNGRVYAVSASAEIVAYATVKIVGWG-EENGRPYWTIVSTFGEQFGDKGTIKILRGR 247
LF G ++ S+ + +A + +VG+G N + YW + +++GE++G G +K+ + R
Sbjct: 144 LFYKEGIYFSSDCSSSSLNHAML-VVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDR 202
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 211 VKIVGWGEE----NGRPYWTIVSTFGEQFGDKGTIKILRGRN 248
V +VG+G E + YW + +++G ++G G +KI + +N
Sbjct: 166 VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 211 VKIVGWGEE----NGRPYWTIVSTFGEQFGDKGTIKILRGRN 248
V +VG+G E + YW + +++G ++G G +KI + +N
Sbjct: 166 VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILR 245
V VG+G +G+ Y I +++G +G+KG +++ R
Sbjct: 161 VTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKG 239
Y V IVG+ G YW + +++ +GD G
Sbjct: 169 YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKG 239
Y V IVG+ G YW + +++ +GD G
Sbjct: 169 YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKG 239
Y V IVG+ G YW + +++ +GD G
Sbjct: 169 YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKG 239
Y V IVG+ G YW + +++ +GD G
Sbjct: 249 YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,708,058
Number of Sequences: 62578
Number of extensions: 417654
Number of successful extensions: 877
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 96
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)