RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15348
(298 letters)
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 254
Score = 85.0 bits (209), Expect = 5e-20
Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 26/239 (10%)
Query: 33 AVATATPLAFAVCRSSKMHVECTSFRFIAGVKQRCAWLVSRWMTIWVCSSGISSSTWAWV 92
A ++ +C + HV V M C+ G + W +
Sbjct: 32 AFGAVEAISDRICIHTNAHVSVE-------VSAEDLLTCCGSMCGDGCNGGYPAEAWNFW 84
Query: 93 HKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGF 152
++GLV+GG + S+ GC+P S PPC H + S P C T PKC C Y +
Sbjct: 85 TRKGLVSGGLYESHVGCRPYSIPPCEH-HVNGSRPPC-TGEGDTPKCSKIC-EPGYSPTY 141
Query: 153 FQDKYQINGLGLYFDP---------HFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASA 203
QDK+ + GP AF F +
Sbjct: 142 KQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF-------SVYSDFLLYKSGVYQHVTG 194
Query: 204 EIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALPK 262
E++ ++I+GWG ENG PYW + +++ +GD G KILRG++ IES V +P+
Sbjct: 195 EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 253
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 63.9 bits (154), Expect = 3e-12
Identities = 22/181 (12%), Positives = 43/181 (23%), Gaps = 4/181 (2%)
Query: 74 WMTIWVCSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLA 133
+ + + ++ LV + H G N E + +A
Sbjct: 116 GVAATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVA 175
Query: 134 TPQPKCHTRCTNDNYGRGFFQDKYQINGLGLYFDPHFGPFWPAFWRSFCTKYTRPLFQTN 193
Q N + +
Sbjct: 176 REQSCRRPNAQRFGISNYCQIYPPNANKI---REALAQTHSAIAVIIGIKDLDAFRHYDG 232
Query: 194 GRVYAVSASAEIVAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIE 253
+ + +A V IVG+ G YW + +++ +GD G + +IE
Sbjct: 233 RTIIQRDNGYQPNYHA-VNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIE 291
Query: 254 S 254
Sbjct: 292 E 292
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
9823]}
Length = 228
Score = 60.0 bits (144), Expect = 3e-11
Identities = 31/177 (17%), Positives = 51/177 (28%), Gaps = 2/177 (1%)
Query: 88 TWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDN 147
T + + P Y T K
Sbjct: 51 TGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQ 110
Query: 148 YGRGFFQDKYQINGLGLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSA--SAEI 205
+ K N + SF + T +Y+ ++
Sbjct: 111 PDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPD 170
Query: 206 VAYATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALPK 262
V VG+GEENG PYW + +++G Q+G G I RG+N + + + +P
Sbjct: 171 KVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL 227
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 55.0 bits (131), Expect = 2e-09
Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 10/210 (4%)
Query: 54 CTSFRFIAGVKQRCAWLVSRWMTIWVCSSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVS 113
C SF + ++ R L + T + + S + G +
Sbjct: 28 CYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLV 87
Query: 114 FPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGLGLYFDPHFGPF 173
C T S + K YG ++ + ++ P F
Sbjct: 88 EEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGC---NEALMKLELVHHGPMAVAF 144
Query: 174 WPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEE--NGRPYWTIVSTF 231
K + + + V +VG+G + +G YW + +++
Sbjct: 145 EVYDDFLHYKKGI-----YHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSW 199
Query: 232 GEQFGDKGTIKILRGRNEAIIESLVNGALP 261
G +G+ G +I RG +E IES+ A P
Sbjct: 200 GTGWGENGYFRIRRGTDECAIESIAVAATP 229
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
9606]}
Length = 275
Score = 53.9 bits (128), Expect = 5e-09
Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 20/176 (11%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
S G +S H + E A Q F++ + I
Sbjct: 101 AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNE---FKECHAIRNY 157
Query: 163 GLYFDPHFGPF---------WPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKI 213
L+ +G A C V +
Sbjct: 158 TLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSV 217
Query: 214 VGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEA--------IIESLVNGALP 261
GWG +G YW + +++GE +G++G ++I+ + IE P
Sbjct: 218 AGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDP 273
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 51.9 bits (123), Expect = 2e-08
Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 11/159 (6%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
N G +F SE AT + + + GF Q L
Sbjct: 159 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKAL 218
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEE--- 219
+ GP A + LF G + S+E + + V +VG+G E
Sbjct: 219 -MKAVATVGPISVAIDAG----HESFLFYKEGIYFEPDCSSEDMDHG-VLVVGYGFESTE 272
Query: 220 -NGRPYWTIVSTFGEQFGDKGTIKILRGR-NEAIIESLV 256
+ YW + +++GE++G G +K+ + R N I S
Sbjct: 273 SDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 311
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 214
Score = 50.3 bits (119), Expect = 4e-08
Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 6/158 (3%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
G ++ + +E + Q + Y + + L
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKL 120
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
+ GP A + ++ + + V +VG+G+ +
Sbjct: 121 AAWL-AKRGPISVAI-----NAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDV 174
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
P+W I +++G +G+KG + RG + ++ + A+
Sbjct: 175 PFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
(Ricinus communis) [TaxId: 3988]}
Length = 224
Score = 49.2 bits (116), Expect = 1e-07
Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 6/147 (4%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
N G +F T+E A ++ ++ + +
Sbjct: 63 QGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDEN 122
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
L P A FQ + + + + +G
Sbjct: 123 ALLKAVANQPVSVAIDAGG------SDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGT 176
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRNE 249
YWT+ +++G ++G+KG I++ RG ++
Sbjct: 177 KYWTVKNSWGPEWGEKGYIRMERGISD 203
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
Length = 215
Score = 48.5 bits (114), Expect = 2e-07
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 1/158 (0%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
+++GC + T + + G +
Sbjct: 57 DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
L D W A + T S +E + + V +VG+ +
Sbjct: 117 ELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHG-VLLVGYNDSAAV 175
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGAL 260
PYW I +++ Q+G++G I+I +G N+ +++ + A+
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
[TaxId: 9606]}
Length = 217
Score = 47.7 bits (112), Expect = 4e-07
Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 6/146 (4%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
N G +F S+ A Q + + + Y +
Sbjct: 64 KGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDV 123
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
+ GP P F S V +VG+G+ NG+
Sbjct: 124 LKEAVANKGPVSVGVD------ARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRN 248
YW + +++G FG++G I++ R +
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKG 203
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia
coronaria) [TaxId: 52861]}
Length = 215
Score = 46.6 bits (109), Expect = 1e-06
Identities = 21/162 (12%), Positives = 45/162 (27%), Gaps = 2/162 (1%)
Query: 90 AWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYG 149
+ G + + C S + + +
Sbjct: 37 INKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSC 96
Query: 150 RGFFQDKYQINGLGLYFDPHFGPFW--PAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVA 207
+ + ING + A T + +
Sbjct: 97 KPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQ 156
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
V IVG+G ++G+ YW + +++G+ +G++G I + R
Sbjct: 157 NHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVAS 198
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 45.8 bits (107), Expect = 1e-06
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 1/146 (0%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
N GC + + + + N + +I
Sbjct: 57 VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEG 116
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
+ T F + G Y S +++ + +A V VG+G + G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHA-VLAVGYGIQKGN 175
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRN 248
+W I +++GE +G+KG I + R +N
Sbjct: 176 KHWIIKNSWGENWGNKGYILMARNKN 201
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit
(Actinidia chinensis) [TaxId: 3625]}
Length = 218
Score = 46.2 bits (108), Expect = 1e-06
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 7/146 (4%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
N G F + +E A +++ N
Sbjct: 63 RGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEW 122
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
L + P A F+ + +A IVG+G E G
Sbjct: 123 ALQTAVTYQPVSVALD------AAGDAFKQYSSGIFTGPCGTAIDHAV-TIVGYGTEGGI 175
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRN 248
YW + +++ +G++G ++ILR
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRILRNVG 201
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 46.1 bits (108), Expect = 1e-06
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
V VG+G +G+ Y I +++G +G+KG +++ R
Sbjct: 161 VTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGN 199
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
papaya) [TaxId: 3649]}
Length = 216
Score = 45.4 bits (106), Expect = 2e-06
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
V VG+G+ G+ Y I +++G +G+KG I+I R
Sbjct: 161 VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGN 199
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
rhizome (Zingiber officinale) [TaxId: 94328]}
Length = 216
Score = 44.2 bits (103), Expect = 6e-06
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
+H G N + E C++ +++ N
Sbjct: 60 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQ 119
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
L P R + S I A + +VG+G EN +
Sbjct: 120 SLQKAVANQPVSVTMD-------AAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDK 172
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRNE 249
+W + +++G+ +G+ G I+ R
Sbjct: 173 DFWIVKNSWGKNWGESGYIRAERNIEN 199
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
[TaxId: 5833]}
Length = 241
Score = 38.0 bits (87), Expect = 6e-04
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 212 KIVGWGEENG----------RPYWTIVSTFGEQFGDKGTIKILRGRN 248
+VG+G + Y+ I +++G+Q+G++G I I +
Sbjct: 177 MLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDES 223
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId:
9606]}
Length = 221
Score = 36.9 bits (84), Expect = 0.001
Identities = 17/179 (9%), Positives = 53/179 (29%), Gaps = 12/179 (6%)
Query: 81 SSGISSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCH 140
++G + + + + + + + + +
Sbjct: 30 ATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESY 89
Query: 141 TRCTNDNYGRGFFQDKYQINGLGLYFDPHFGPFWPA-------FWRSFCTKYTRPLFQTN 193
D + ++ + P + ++ F +
Sbjct: 90 PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 149
Query: 194 GRVYAVSASAEIVAYATVKIVGW----GEENGRPYWTIVSTFGEQFGDKGTIKILRGRN 248
G + S++ + + V +VG+ + YW + +++G ++G G +KI + +N
Sbjct: 150 GIYFEPDCSSKNLDHG-VLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Length = 212
Score = 35.8 bits (81), Expect = 0.003
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNE 249
V VG+G Y I +++G +G+ G I+I RG
Sbjct: 161 VAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGN 195
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 35.0 bits (79), Expect = 0.006
Identities = 21/147 (14%), Positives = 38/147 (25%), Gaps = 13/147 (8%)
Query: 103 HHSNTGCQPVSFPPCNHANYTTSEPECKTLATPQPKCHTRCTNDNYGRGFFQDKYQINGL 162
+H G V N Q C + G+ +
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSI-DGYNGVPFCNEXA 118
Query: 163 GLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVAYATVKIVGWGEENGR 222
S + + ++ V IVG+
Sbjct: 119 LKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHG--------VTIVGYQAN--- 167
Query: 223 PYWTIVSTFGEQFGDKGTIKILRGRNE 249
YW + +++G +G+KG I++LR
Sbjct: 168 -YWIVRNSWGRYWGEKGYIRMLRVGGC 193
>d2j0111 d.325.1.1 (1:8-96) Ribosomal protein L28 (L28p) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 26.7 bits (59), Expect = 1.3
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 55 TSFRFIAGVKQRCAWLVSRWMTIWVCSSGI 84
+ R +++ + + +T V +S I
Sbjct: 31 SKRRQYPNLQKVRVRVAGQEITFRVAASHI 60
>d1rlha_ d.256.1.1 (A:) Hypothetical protein Ta1353 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 151
Score = 27.0 bits (60), Expect = 2.0
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 249 EAIIESLVNGALPKDNYGVEFGEESGERLSEEFGVRAESSEE 290
E + E + +P YG+ F E SG+RL +R + +++
Sbjct: 37 EDLNEIIR-THVPGSKYGIGFSEASGDRL-----IRYDGNDD 72
>d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 72
Score = 25.4 bits (56), Expect = 2.5
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 58 RFIAGVKQRCAWLVSRWMTIWVCSSGISS 86
A + ++ + T+W+ ++ + +
Sbjct: 34 VQRANLHKKAIRENGQVKTVWLSANALRT 62
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091)
{Thermus thermophilus [TaxId: 274]}
Length = 161
Score = 26.5 bits (59), Expect = 2.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 249 EAIIESLVNGALPKDNYGVEFGEESGERLSEEFGVRAESSEE 290
E + E+LV A+P +G+ F E SG+RL VR ++E
Sbjct: 28 EDLHEALV-TAVPGIRFGLAFSEASGKRL-----VRRSGTDE 63
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 95
Score = 25.6 bits (56), Expect = 3.2
Identities = 5/30 (16%), Positives = 7/30 (23%), Gaps = 1/30 (3%)
Query: 211 VKIVGWGEENGRPYWTIVSTFGEQFGDKGT 240
+ I W + P V G
Sbjct: 52 ISIDSWPTTHKYPLGHFVRDLGT-IESAQA 80
>d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 205
Score = 26.2 bits (57), Expect = 4.3
Identities = 20/118 (16%), Positives = 31/118 (26%), Gaps = 10/118 (8%)
Query: 148 YGRGFFQDKYQINGLGLYFDPHFGPFWPAFWRSFCTKYTRPLFQTNGRVYAVSASAEIVA 207
G D +N D + F TK + ++ +A +A
Sbjct: 74 VGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLA 133
Query: 208 YATVKIVGWGEENGRPYWTIVSTFGEQFGDKGTIKILRGRNEAIIESLVNGALPKDNY 265
++ VG T K L IIE L +P+ Y
Sbjct: 134 DKQIRGVGID----------ALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRY 181
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 26.5 bits (58), Expect = 4.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 257 NGALP---KDNYGVEFGEESGERLSEEFGVRAESSEEFRENGE 296
NG L D VE E GE FG +E+ EE R N +
Sbjct: 729 NGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQ 771
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 26.6 bits (58), Expect = 4.4
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 254 SLVNGALP---KDNYGVEFGEESGERLSEEFGVRAESSEEFRENG 295
+NGAL D VE E+ GE FG E + G
Sbjct: 646 LALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKG 690
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 25.1 bits (54), Expect = 5.6
Identities = 6/47 (12%), Positives = 10/47 (21%)
Query: 49 KMHVECTSFRFIAGVKQRCAWLVSRWMTIWVCSSGISSSTWAWVHKR 95
H + + +C G SS A +
Sbjct: 34 MGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQ 80
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 25.7 bits (55), Expect = 6.2
Identities = 11/127 (8%), Positives = 27/127 (21%), Gaps = 4/127 (3%)
Query: 1 MGGGTSSRIRDMSYGATVYNRRPYALSCIEARAVATATPLAFAVCRSSKMHVECTS--FR 58
MG + D + +NR + A L ++
Sbjct: 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIIL 72
Query: 59 FIAGVKQRCAWLVSRWMTIWVCSSGI--SSSTWAWVHKRGLVTGGAHHSNTGCQPVSFPP 116
+ + ++ + + I +S + +R G
Sbjct: 73 LVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGED 132
Query: 117 CNHANYT 123
+
Sbjct: 133 GARYGPS 139
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 25.1 bits (54), Expect = 9.0
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 6/113 (5%)
Query: 1 MGGGTSSRIRDMSYGATVYNRRPYALSCIEARAVATATPLAFAVCRSSK---MHVECTSF 57
MG S + Y V +R P A++ + A TA+ + M
Sbjct: 11 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHV 70
Query: 58 RFIAGVKQRCAWLVSRWMTIWVCSSGISSST---WAWVHKRGLVTGGAHHSNT 107
+ +A + + SS ++ + +G+ A S
Sbjct: 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGG 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.438
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,187,829
Number of extensions: 55808
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 38
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)