Query psy15349
Match_columns 80
No_of_seqs 110 out of 1045
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 18:38:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.9 3.7E-22 8E-27 145.4 6.1 74 1-74 93-170 (663)
2 KOG0103|consensus 99.6 3.4E-16 7.4E-21 118.6 4.5 73 1-73 58-131 (727)
3 KOG0102|consensus 99.6 1.7E-15 3.7E-20 112.8 4.3 66 1-70 85-151 (640)
4 PTZ00009 heat shock 70 kDa pro 99.5 1.6E-14 3.4E-19 109.7 7.3 70 1-70 61-131 (653)
5 KOG0101|consensus 99.5 4.5E-15 9.8E-20 112.0 1.9 74 1-74 64-141 (620)
6 PTZ00400 DnaK-type molecular c 99.5 9.5E-14 2.1E-18 105.7 6.4 71 1-75 99-173 (663)
7 PTZ00186 heat shock 70 kDa pre 99.4 8.8E-13 1.9E-17 100.6 7.5 71 1-74 84-158 (657)
8 PF00012 HSP70: Hsp70 protein; 99.3 2.1E-12 4.5E-17 96.0 6.1 71 1-71 56-127 (602)
9 PRK13410 molecular chaperone D 99.3 3.4E-12 7.3E-17 97.5 6.6 71 1-75 60-134 (668)
10 PRK13411 molecular chaperone D 99.3 4.2E-12 9.2E-17 96.6 6.6 68 1-74 60-131 (653)
11 PRK00290 dnaK molecular chaper 99.3 1.2E-11 2.7E-16 93.5 7.1 64 1-70 60-124 (627)
12 PLN03184 chloroplast Hsp70; Pr 99.3 1.4E-11 3E-16 94.2 6.9 66 1-70 97-163 (673)
13 TIGR02350 prok_dnaK chaperone 99.2 2E-11 4.4E-16 91.7 6.4 64 1-70 58-121 (595)
14 TIGR01991 HscA Fe-S protein as 99.2 7.3E-11 1.6E-15 89.1 6.6 63 1-70 57-120 (599)
15 PRK05183 hscA chaperone protei 99.1 1.2E-10 2.6E-15 88.3 6.6 65 1-71 76-141 (616)
16 CHL00094 dnaK heat shock prote 99.1 1E-10 2.3E-15 88.5 6.2 66 1-70 60-126 (621)
17 KOG0104|consensus 98.5 3.2E-07 6.9E-12 71.3 6.9 66 1-69 80-148 (902)
18 PRK01433 hscA chaperone protei 98.3 8.4E-07 1.8E-11 67.4 4.7 58 6-70 71-132 (595)
19 COG0443 DnaK Molecular chapero 98.1 1.7E-06 3.7E-11 65.7 2.9 47 1-70 64-111 (579)
20 PRK11678 putative chaperone; P 91.9 0.15 3.3E-06 38.0 2.7 17 55-71 125-141 (450)
21 PF03484 B5: tRNA synthetase B 81.1 7.2 0.00016 21.5 5.1 58 7-65 8-66 (70)
22 cd02426 Pol_gamma_b_Cterm C-te 62.1 16 0.00034 22.7 3.5 43 25-67 79-126 (128)
23 smart00874 B5 tRNA synthetase 59.6 17 0.00036 19.7 3.1 30 7-36 8-37 (71)
24 cd00862 ProRS_anticodon_zinc P 53.9 59 0.0013 21.5 5.5 46 24-69 62-112 (202)
25 PRK04081 hypothetical protein; 53.0 43 0.00093 22.9 4.7 45 32-76 61-108 (207)
26 PF11423 Repressor_Mnt: Regula 52.9 20 0.00044 17.0 2.2 17 56-72 12-28 (30)
27 COG1097 RRP4 RNA-binding prote 51.3 23 0.00051 24.7 3.3 35 9-45 156-191 (239)
28 PF10574 UPF0552: Uncharacteri 50.2 16 0.00035 25.2 2.3 36 41-79 98-133 (224)
29 PF10788 DUF2603: Protein of u 47.8 46 0.001 21.3 4.0 36 37-72 38-73 (137)
30 PF08127 Propeptide_C1: Peptid 45.2 12 0.00027 18.9 0.9 16 4-19 24-39 (41)
31 TIGR03046 PS_II_psbV2 photosys 43.6 59 0.0013 21.2 4.1 44 19-72 23-66 (155)
32 PF14053 DUF4248: Domain of un 43.4 29 0.00063 19.4 2.4 44 2-63 20-63 (69)
33 PRK13660 hypothetical protein; 39.5 12 0.00025 25.0 0.3 51 19-74 20-72 (182)
34 PRK04163 exosome complex RNA-b 38.6 38 0.00082 23.1 2.8 36 8-45 154-190 (235)
35 PF06908 DUF1273: Protein of u 38.1 6.3 0.00014 26.0 -1.1 51 19-74 20-72 (177)
36 COG4474 Uncharacterized protei 36.6 14 0.0003 24.6 0.4 55 19-78 20-81 (180)
37 KOG1004|consensus 34.2 1.5E+02 0.0033 20.5 5.1 37 8-46 156-193 (230)
38 PRK05339 PEP synthetase regula 33.4 16 0.00035 25.8 0.3 47 16-69 217-264 (269)
39 COG4545 Glutaredoxin-related p 32.6 63 0.0014 18.9 2.6 22 6-27 37-58 (85)
40 smart00309 PAH Pancreatic horm 31.5 59 0.0013 16.1 2.1 22 53-75 11-32 (36)
41 PF08171 Mad3_BUB1_II: Mad3/BU 31.3 28 0.00061 19.7 1.0 32 32-63 16-53 (68)
42 PF10178 DUF2372: Uncharacteri 30.6 4.8 0.0001 23.9 -2.3 29 4-34 27-55 (90)
43 PF12937 F-box-like: F-box-lik 29.7 30 0.00066 17.0 0.9 13 55-67 4-16 (47)
44 COG1936 Predicted nucleotide k 29.6 21 0.00046 23.9 0.4 55 10-68 97-155 (180)
45 PF08673 RsbU_N: Phosphoserine 29.4 62 0.0014 18.5 2.3 24 52-75 33-56 (77)
46 PF04407 DUF531: Protein of un 29.1 36 0.00079 22.5 1.4 27 39-65 92-118 (173)
47 PF14847 Ras_bdg_2: Ras-bindin 28.1 96 0.0021 18.8 3.0 27 36-67 7-34 (105)
48 PRK13621 psbV cytochrome c-550 27.6 1.7E+02 0.0037 19.4 4.3 32 39-72 46-77 (170)
49 PF12971 NAGLU_N: Alpha-N-acet 27.6 1.3E+02 0.0028 17.2 4.5 56 10-75 9-69 (86)
50 COG4894 Uncharacterized conser 26.2 51 0.0011 21.6 1.6 46 31-76 20-67 (159)
51 PRK14894 glycyl-tRNA synthetas 25.7 1.4E+02 0.0031 23.3 4.2 42 26-67 484-537 (539)
52 PF02575 YbaB_DNA_bd: YbaB/Ebf 25.4 1.4E+02 0.003 16.9 5.2 49 23-71 14-72 (93)
53 PF00165 HTH_AraC: Bacterial r 25.2 52 0.0011 15.8 1.3 24 54-77 9-38 (42)
54 PRK08661 prolyl-tRNA synthetas 25.0 2.2E+02 0.0047 21.5 5.0 46 25-70 340-390 (477)
55 PF02593 dTMP_synthase: Thymid 24.1 54 0.0012 22.5 1.6 29 4-32 156-184 (217)
56 PF07308 DUF1456: Protein of u 23.9 29 0.00062 19.4 0.2 23 52-74 28-50 (68)
57 KOG1584|consensus 23.7 65 0.0014 23.2 2.0 24 2-25 201-224 (297)
58 PF01913 FTR: Formylmethanofur 23.6 2E+02 0.0044 18.6 4.0 34 37-74 66-99 (144)
59 TIGR00408 proS_fam_I prolyl-tR 23.4 2.6E+02 0.0056 21.1 5.2 45 25-69 334-383 (472)
60 TIGR00995 3a0901s06TIC22 chlor 23.2 2.8E+02 0.0061 19.7 5.1 55 17-71 69-127 (270)
61 PF05965 FYRC: F/Y rich C-term 22.9 1.6E+02 0.0034 16.6 4.0 33 38-70 1-37 (86)
62 PLN02975 complex I subunit 22.7 50 0.0011 19.9 1.1 20 8-27 77-96 (97)
63 PF09105 SelB-wing_1: Elongati 22.7 48 0.001 17.7 0.9 15 55-69 2-16 (61)
64 PF11955 PORR: Plant organelle 22.5 1.8E+02 0.0039 21.1 4.1 58 4-63 120-180 (335)
65 PF12993 DUF3877: Domain of un 21.1 73 0.0016 21.2 1.7 57 7-65 32-89 (175)
66 KOG3493|consensus 20.8 39 0.00085 19.1 0.3 15 2-16 19-33 (73)
No 1
>KOG0100|consensus
Probab=99.86 E-value=3.7e-22 Score=145.41 Aligned_cols=74 Identities=57% Similarity=0.838 Sum_probs=68.9
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEEC-CcceEEchHhHHHHHHhHhHHH---hhcc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYK-GETKSFFPEEVGIMWWSLEPVL---YLAL 74 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~-~~~~~~speeI~a~iL~~lk~~---~~~~ 74 (80)
+||+||||++||||||+|+|+.||+..+.|||++++.+|.|.++|... |+.+.|+|||||||||.+||++ |||-
T Consensus 93 ~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGk 170 (663)
T KOG0100|consen 93 SNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGK 170 (663)
T ss_pred cCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 599999999999999999999999999999999999999999999977 6789999999999999999764 7764
No 2
>KOG0103|consensus
Probab=99.62 E-value=3.4e-16 Score=118.55 Aligned_cols=73 Identities=41% Similarity=0.548 Sum_probs=69.2
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhhc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLA 73 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~ 73 (80)
+|++||+.++|||+||.|+||.+|.+.+.+|+.++. .||.+++.+.|.|+...|+|+||.||+|.++|.+--.
T Consensus 58 ~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~ 131 (727)
T KOG0103|consen 58 TNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEK 131 (727)
T ss_pred ecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998 8999999999999999999999999999999887543
No 3
>KOG0102|consensus
Probab=99.57 E-value=1.7e-15 Score=112.83 Aligned_cols=66 Identities=36% Similarity=0.652 Sum_probs=62.1
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
.||.||+|..||+|||+|+||++|++.+.+||+++. .||..|++. +++.+||.||++|+|.+||+.
T Consensus 85 ~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~t 151 (640)
T KOG0102|consen 85 TNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKET 151 (640)
T ss_pred cCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999988 899999998 478999999999999999864
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=109.72 Aligned_cols=70 Identities=57% Similarity=0.975 Sum_probs=65.1
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++|+|+.++...+.|||.++. .+|.+.+.+.+.++.+.|+||||+|++|++||+.
T Consensus 61 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ 131 (653)
T PTZ00009 61 RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEI 131 (653)
T ss_pred hCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999887 7899999999888888999999999999999865
No 5
>KOG0101|consensus
Probab=99.51 E-value=4.5e-15 Score=112.02 Aligned_cols=74 Identities=65% Similarity=1.002 Sum_probs=67.8
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHH---Hhhcc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV---LYLAL 74 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~---~~~~~ 74 (80)
+||.|||+++||+|||.|+||.+|..+++|||.+.. .++.+.+++.++++.+.|+|+++++++|.+||+ .|++.
T Consensus 64 ~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~ 141 (620)
T KOG0101|consen 64 RNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGK 141 (620)
T ss_pred cCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcC
Confidence 589999999999999999999999999999999986 677899999999999999999999999999865 46654
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.47 E-value=9.5e-14 Score=105.74 Aligned_cols=71 Identities=31% Similarity=0.608 Sum_probs=62.3
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH---hhccC
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL---YLALT 75 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~---~~~~~ 75 (80)
+||+||++++|||||++++|+.++...+.|||+++. ++|.+.+.+. .+.|+||||+||+|++||+. +++.+
T Consensus 99 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~ 173 (663)
T PTZ00400 99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRK 173 (663)
T ss_pred hCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCC
Confidence 489999999999999999999999999999999987 7888888774 57899999999999999865 45543
No 7
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.40 E-value=8.8e-13 Score=100.58 Aligned_cols=71 Identities=32% Similarity=0.623 Sum_probs=60.6
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHH---Hhhcc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV---LYLAL 74 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~---~~~~~ 74 (80)
+||+||++++||+||++++|+.++...+.|||+++. .+|.+.+.. +..+.|+|+||+|++|++||+ .|++.
T Consensus 84 ~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~ 158 (657)
T PTZ00186 84 TNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGH 158 (657)
T ss_pred hCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999987 777776653 235789999999999999976 45554
No 8
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.34 E-value=2.1e-12 Score=96.04 Aligned_cols=71 Identities=44% Similarity=0.753 Sum_probs=65.8
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHh
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~ 71 (80)
.||+|+++++|||||+.++++.++.+.+.+||+++. ++|.+.+++.+.++.+.++|+|++|++|+++++..
T Consensus 56 ~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a 127 (602)
T PF00012_consen 56 RNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMA 127 (602)
T ss_dssp TSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccc
Confidence 479999999999999999999999999999999988 69999999998888889999999999999998653
No 9
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.32 E-value=3.4e-12 Score=97.50 Aligned_cols=71 Identities=31% Similarity=0.595 Sum_probs=59.0
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHH---HhhccC
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV---LYLALT 75 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~---~~~~~~ 75 (80)
+||+||++++||+||++++| ++.+.+.+||.++. ++|.+.+.+. ...+.|+||||+|++|++||+ .|++..
T Consensus 60 ~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~--~~~~~~speel~a~iL~~lk~~ae~~lg~~ 134 (668)
T PRK13410 60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCP--RLEREFAPEELSAMILRKLADDASRYLGEP 134 (668)
T ss_pred hCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCC
Confidence 48999999999999999987 66677899999987 7888887764 335789999999999999985 455543
No 10
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.31 E-value=4.2e-12 Score=96.63 Aligned_cols=68 Identities=28% Similarity=0.528 Sum_probs=56.8
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH---hhcc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL---YLAL 74 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~---~~~~ 74 (80)
+||+||++++||+||++++|+. .+.+++||.++. .+|.+.+.+. .+.|+|+||+|++|++||+. |++.
T Consensus 60 ~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~i~----~~~~~peei~a~iL~~lk~~ae~~lg~ 131 (653)
T PRK13411 60 TNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMILQKLKQDAEAYLGE 131 (653)
T ss_pred hCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCC
Confidence 4899999999999999999964 456889999887 7788777774 46899999999999999764 5554
No 11
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.27 E-value=1.2e-11 Score=93.47 Aligned_cols=64 Identities=38% Similarity=0.645 Sum_probs=56.1
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++ ++.++...+.|||+++. ++|...+.+. .+.++||||+|++|++||+.
T Consensus 60 ~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~peel~a~iL~~lk~~ 124 (627)
T PRK00290 60 TNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISAMILQKLKKD 124 (627)
T ss_pred hCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEEEC----CEEEcHHHHHHHHHHHHHHH
Confidence 48999999999999999 67789999999999988 7788777663 47899999999999999864
No 12
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.26 E-value=1.4e-11 Score=94.16 Aligned_cols=66 Identities=32% Similarity=0.462 Sum_probs=56.7
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++++| ++.+.+.|||+++. ++|.+.+.+... .+.|+|+||+|++|++|++.
T Consensus 97 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ 163 (673)
T PLN03184 97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDD 163 (673)
T ss_pred hCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHH
Confidence 48999999999999999987 66778899999987 788887776543 46899999999999999874
No 13
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.23 E-value=2e-11 Score=91.69 Aligned_cols=64 Identities=38% Similarity=0.707 Sum_probs=55.6
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||+++++ ++...+.+||++..++|.+.+.+. .+.++|+||+|++|++||+.
T Consensus 58 ~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~v~~~~~~~~~~v~----~~~~~peel~a~~L~~l~~~ 121 (595)
T TIGR02350 58 TNPENTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKD 121 (595)
T ss_pred hCchhhhHHHHHHhCCCchH--HHHHhhcCCeeEEcCCCceEEEEC----CEEecHHHHHHHHHHHHHHH
Confidence 48999999999999999954 778889999996668888888874 57899999999999999864
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.17 E-value=7.3e-11 Score=89.14 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=53.3
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+|||+++||+||++++|+. . .+.+||.++. .+|.+.+++. ...++|+||+|++|++||+.
T Consensus 57 ~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~----~~~~~p~ei~a~iL~~lk~~ 120 (599)
T TIGR01991 57 EDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTV----QGTVTPVEVSAEILKKLKQR 120 (599)
T ss_pred hChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeC----CCEEcHHHHHHHHHHHHHHH
Confidence 4799999999999999998843 3 6779999987 7888888774 23789999999999999864
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.13 E-value=1.2e-10 Score=88.25 Aligned_cols=65 Identities=29% Similarity=0.422 Sum_probs=55.2
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHh
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~ 71 (80)
+||+||++++||+||++++| ++...+.+||.+.. ++|.+.+.+. ...++|+||+|++|++||+.-
T Consensus 76 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~a 141 (616)
T PRK05183 76 QDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRA 141 (616)
T ss_pred hCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHH
Confidence 47999999999999999988 55566789999887 6898888874 237899999999999998753
No 16
>CHL00094 dnaK heat shock protein 70
Probab=99.13 E-value=1e-10 Score=88.52 Aligned_cols=66 Identities=32% Similarity=0.510 Sum_probs=55.9
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++++| ++...+.|||.++. ++|.+.+.+... .+.++|+||+|++|+++++.
T Consensus 60 ~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ 126 (621)
T CHL00094 60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVED 126 (621)
T ss_pred hCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHH
Confidence 38999999999999999987 66677889999987 778887776433 46899999999999999874
No 17
>KOG0104|consensus
Probab=98.52 E-value=3.2e-07 Score=71.26 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=55.3
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCe-EEeeC--CCcceEEEEECCcceEEchHhHHHHHHhHhHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPF-TVVSD--GGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf-~i~~~--~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~ 69 (80)
++|++++..+|.|+|++.+||.++.+.+++|| .++.+ .+.+.|.+. + ...||+||+.||+|.+.+.
T Consensus 80 r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~ 148 (902)
T KOG0104|consen 80 RFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKS 148 (902)
T ss_pred cCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999996 56664 456666653 3 5789999999999998754
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.31 E-value=8.4e-07 Score=67.44 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=38.3
Q ss_pred hHHhhHHhhCCCCCCH----HHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 6 TIFDAKRLIGRKFDDA----TVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 6 Ti~~~KRliGr~~~d~----~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
|++++||+||++++|. .+....+.+ +...++...+.+ . .+.|+|+||+|++|++||+.
T Consensus 71 ti~~~KrliG~~~~~~~~~~~~~~~~k~~---~~~~~~~~~~~~--~--~~~~speei~a~iL~~lk~~ 132 (595)
T PRK01433 71 GLRSIKRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNF--A--NKQLRIPEIAAEIFIYLKNQ 132 (595)
T ss_pred hHHHHHHHhCCCchhhccchhhHhhhhhe---eecCCCeeEEEE--C--CEEEcHHHHHHHHHHHHHHH
Confidence 8999999999999873 222221111 111233333333 2 46899999999999999875
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.7e-06 Score=65.66 Aligned_cols=47 Identities=38% Similarity=0.514 Sum_probs=36.2
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCc-ceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGK-PKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~-~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||.||++++||+||+. .++. ..+.+ . .+.++|+||+|++|++||+.
T Consensus 64 ~~p~~t~~~~kr~~G~~-------------------~~~~~~~~~~--~--~~~~~~eeisa~~L~~lk~~ 111 (579)
T COG0443 64 DNPENTIFSIKRKIGRG-------------------SNGLKISVEV--D--GKKYTPEEISAMILTKLKED 111 (579)
T ss_pred hCCcceEEEEehhcCCC-------------------CCCCcceeee--C--CeeeCHHHHHHHHHHHHHHH
Confidence 48999999999999997 1111 23333 2 37899999999999999764
No 20
>PRK11678 putative chaperone; Provisional
Probab=91.86 E-value=0.15 Score=37.96 Aligned_cols=17 Identities=6% Similarity=-0.259 Sum_probs=14.5
Q ss_pred chHhHHHHHHhHhHHHh
Q psy15349 55 FPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 55 speeI~a~iL~~lk~~~ 71 (80)
.||++++++|++||+..
T Consensus 125 ~~e~l~a~iL~~lk~~a 141 (450)
T PRK11678 125 LFEDLVCAMMLHIKQQA 141 (450)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 38999999999998753
No 21
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=81.09 E-value=7.2 Score=21.51 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=36.6
Q ss_pred HHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHh
Q psy15349 7 IFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWS 65 (80)
Q Consensus 7 i~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~ 65 (80)
...++|++|..++..++...++++-|.+.. .++...+.+-.-- .=...++++...|++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R-~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYR-FDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTS-TT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCc-CCcCcccHHHHHHHH
Confidence 456889999999999999999999999988 5666555554211 223456666665543
No 22
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=62.05 E-value=16 Score=22.65 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=28.2
Q ss_pred hhcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHh
Q psy15349 25 ADMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLE 67 (80)
Q Consensus 25 ~~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~l 67 (80)
.+....||.|+- ++|.+.+.-...++...++.+++...+...+
T Consensus 79 ~dliGiP~~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~ 126 (128)
T cd02426 79 YDEMGVLFTLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYI 126 (128)
T ss_pred hhhcCCCEEEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHh
Confidence 456789999764 2555555444455666788888877766544
No 23
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=59.58 E-value=17 Score=19.71 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHhhHHhhCCCCCCHHHHhhcccCCeEEee
Q psy15349 7 IFDAKRLIGRKFDDATVQADMKHWPFTVVS 36 (80)
Q Consensus 7 i~~~KRliGr~~~d~~vq~~~~~~pf~i~~ 36 (80)
...+.+++|..+++.++...+++.-|.+..
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEVEV 37 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeEEe
Confidence 456789999999998898888888888755
No 24
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=53.95 E-value=59 Score=21.51 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=31.7
Q ss_pred HhhcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHH
Q psy15349 24 QADMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 24 q~~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~ 69 (80)
..+++..||.|+- ++|.+.+.-...++...++.+++.+.+...+.+
T Consensus 62 ~ae~~GvP~~I~IG~~Ele~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~ 112 (202)
T cd00862 62 DWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELLDE 112 (202)
T ss_pred HHHhCCCCEEEEECcchhhCCEEEEEEecCCcceEEEHHHHHHHHHHHHHH
Confidence 3456789998764 357777666666777788888887776554443
No 25
>PRK04081 hypothetical protein; Provisional
Probab=53.01 E-value=43 Score=22.87 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=30.8
Q ss_pred eEEee--CCCcceEEEEE-CCcceEEchHhHHHHHHhHhHHHhhccCc
Q psy15349 32 FTVVS--DGGKPKIQVEY-KGETKSFFPEEVGIMWWSLEPVLYLALTP 76 (80)
Q Consensus 32 f~i~~--~~g~~~~~v~~-~~~~~~~speeI~a~iL~~lk~~~~~~~~ 76 (80)
|+|++ +.....+-|.+ ++.++.+|.||+-+.|=.+-+++=-+-.+
T Consensus 61 YKI~eE~Ps~~Trvilr~~dG~ER~LS~eE~dkLi~eE~~KId~gTS~ 108 (207)
T PRK04081 61 YKILEEYPSSETRVVLRDLDGTERVLSQEEIDKLIKEEEAKIDNGTSN 108 (207)
T ss_pred eEeeeecCCCcceEEEecCCCcccccCHHHHHHHHHHHHHhhccCCCc
Confidence 66655 33445555654 56888999999999988887766554443
No 26
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=52.86 E-value=20 Score=16.99 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=13.8
Q ss_pred hHhHHHHHHhHhHHHhh
Q psy15349 56 PEEVGIMWWSLEPVLYL 72 (80)
Q Consensus 56 peeI~a~iL~~lk~~~~ 72 (80)
.++|-.+++..||.+|.
T Consensus 12 se~vkk~VfetLK~~Y~ 28 (30)
T PF11423_consen 12 SEMVKKMVFETLKDMYS 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46777889999999885
No 27
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=51.31 E-value=23 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.1
Q ss_pred hhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEE
Q psy15349 9 DAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQV 45 (80)
Q Consensus 9 ~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v 45 (80)
.+-|+||+..+- ++..+....|.|+- .||.+|+.-
T Consensus 156 kVpRvig~~~sm--~~~l~~~~~~~I~VG~NG~IWV~~ 191 (239)
T COG1097 156 KVPRVIGKKGSM--LNMLKEKTGCEIIVGQNGRIWVDG 191 (239)
T ss_pred hcceEecCCCcH--HHHhhhhcCeEEEEecCCEEEecC
Confidence 345899998886 55566677899877 999999764
No 28
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=50.23 E-value=16 Score=25.20 Aligned_cols=36 Identities=36% Similarity=0.440 Sum_probs=27.6
Q ss_pred ceEEEEECCcceEEchHhHHHHHHhHhHHHhhccCcccc
Q psy15349 41 PKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLALTPFHT 79 (80)
Q Consensus 41 ~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~~~~~~~ 79 (80)
-.+.|...|..-.++++|+.+.| =|.-.+++|..|+
T Consensus 98 SsykveAkg~tDrls~~~L~~~V---~k~~ll~lt~~~~ 133 (224)
T PF10574_consen 98 SSYKVEAKGDTDRLSPEQLKALV---NKPELLALTESHT 133 (224)
T ss_pred cccEEEecCCccccCHHHHHHHh---CchhhcccccccC
Confidence 35667667777889999999999 3334779998886
No 29
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=47.85 E-value=46 Score=21.31 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=30.0
Q ss_pred CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhh
Q psy15349 37 DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYL 72 (80)
Q Consensus 37 ~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~ 72 (80)
++..|||-.+.+|+...+.|.+....++..+|..+.
T Consensus 38 ~~~EpWf~~De~~~~~~l~p~~~l~~Li~~~k~~~~ 73 (137)
T PF10788_consen 38 NENEPWFIIDENNEEYVLLPQKSLQNLIESLKNAQK 73 (137)
T ss_pred CCCCCeEEEcCCCCEEEEECHHHHHHHHHHHHHHHH
Confidence 345689999989989899999999999998887654
No 30
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=45.21 E-value=12 Score=18.86 Aligned_cols=16 Identities=44% Similarity=0.426 Sum_probs=9.7
Q ss_pred chhHHhhHHhhCCCCC
Q psy15349 4 NNTIFDAKRLIGRKFD 19 (80)
Q Consensus 4 ~nTi~~~KRliGr~~~ 19 (80)
.-++.++|||+|-.-+
T Consensus 24 ~~~~~~ik~LlGv~~~ 39 (41)
T PF08127_consen 24 NTSIEYIKRLLGVLPD 39 (41)
T ss_dssp SB-HHHHHHCS-B-TT
T ss_pred CCCHHHHHHHcCCCCC
Confidence 4568899999996544
No 31
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=43.55 E-value=59 Score=21.20 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhh
Q psy15349 19 DDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYL 72 (80)
Q Consensus 19 ~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~ 72 (80)
.||.|+..++ -.|-+.+.++..|+...||++++.+= +++....|
T Consensus 23 ~d~yv~~~l~--------~~~~~~~~~~~~g~~~~~s~~d~~~G--~~lF~~~C 66 (155)
T TIGR03046 23 VDPYVKQYLR--------VTGPVELPLDAQGELKTFTPEQLTDG--KNLFESNC 66 (155)
T ss_pred cChHHHHHhc--------cCCceEeecCCCCCeEEeCHHHHHhH--HHHHHHHH
Confidence 4666666543 23444555666677889999998875 55555554
No 32
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=43.39 E-value=29 Score=19.43 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=28.1
Q ss_pred CcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHH
Q psy15349 2 NPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMW 63 (80)
Q Consensus 2 np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~i 63 (80)
.|++.+-.+.|.|.+ ++.+..++.. ..+....+.|+|.||...+
T Consensus 20 ~~~sA~r~L~rwI~~---~~~L~~~L~~---------------~Gy~~~~r~~TP~QV~lIv 63 (69)
T PF14053_consen 20 TPSSAVRKLRRWIRR---NPELLEELEA---------------TGYHPRQRSFTPRQVRLIV 63 (69)
T ss_pred CHHHHHHHHHHHHHH---CHHHHHHHHH---------------cCCCCCCEecCHHHHHHHH
Confidence 467777778888864 5555555431 2234457889999987643
No 33
>PRK13660 hypothetical protein; Provisional
Probab=39.52 E-value=12 Score=24.98 Aligned_cols=51 Identities=12% Similarity=-0.031 Sum_probs=34.9
Q ss_pred CCHHHHhhcccCCeEEee--CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhhcc
Q psy15349 19 DDATVQADMKHWPFTVVS--DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 19 ~d~~vq~~~~~~pf~i~~--~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~~ 74 (80)
+||.+...++.+--.+.. ++|.-+|-+ +..+-.+..+|.+.-+||+-|.++
T Consensus 20 ~dp~~~~IK~aL~~~l~~~~e~G~~wfi~-----ggalG~d~wAaEvvl~LK~~yp~l 72 (182)
T PRK13660 20 KDPKIKYIKKAIKRKLIALLEEGLEWVII-----SGQLGVELWAAEVVLELKEEYPDL 72 (182)
T ss_pred cChhhHHHHHHHHHHHHHHHHCCCCEEEE-----CCcchHHHHHHHHHHHHHhhCCCe
Confidence 445554444333333333 578777766 457889999999999999998874
No 34
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=38.61 E-value=38 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=26.2
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQV 45 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v 45 (80)
..++|+||..-. .++.....++|+|.- .||.+|+..
T Consensus 154 ~~i~~lig~~g~--~i~~l~~~~~~~I~ig~NG~VwI~~ 190 (235)
T PRK04163 154 VKVPRVIGKKGS--MINMLKEETGCDIIVGQNGRIWIKG 190 (235)
T ss_pred HHHHhhcCCCCh--hHhhhhhhhCcEEEEcCCcEEEEee
Confidence 457889987533 366666678999866 899998765
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=38.10 E-value=6.3 Score=25.97 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=29.5
Q ss_pred CCHHHHhhcccCCeEEee--CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhhcc
Q psy15349 19 DDATVQADMKHWPFTVVS--DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 19 ~d~~vq~~~~~~pf~i~~--~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~~ 74 (80)
+||.++..++.+--.|.. ++|.-+|-. +...-.+..+|.+..+||+-|.++
T Consensus 20 ~~~~~~~ik~~L~~~i~~lie~G~~~fi~-----GgalG~D~waae~vl~LK~~yp~i 72 (177)
T PF06908_consen 20 KDPKIQVIKKALKKQIIELIEEGVRWFIT-----GGALGVDLWAAEVVLELKKEYPEI 72 (177)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT--EEEE--------TTHHHHHHHHHHTTTTT-TT-
T ss_pred CchhHHHHHHHHHHHHHHHHHCCCCEEEE-----CCcccHHHHHHHHHHHHHhhhhhe
Confidence 555555544433333433 678777665 356778999999999999999843
No 36
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.59 E-value=14 Score=24.65 Aligned_cols=55 Identities=16% Similarity=0.011 Sum_probs=38.6
Q ss_pred CCHHHHhhcccCCeEEee--CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhhc-----cCccc
Q psy15349 19 DDATVQADMKHWPFTVVS--DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLA-----LTPFH 78 (80)
Q Consensus 19 ~d~~vq~~~~~~pf~i~~--~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~-----~~~~~ 78 (80)
+||.+...++.+--.+.. ++|.-++-++ ..+..|+-++.+...||+.|.. .|||-
T Consensus 20 k~p~~~~IKkai~~~l~~lleeGleW~lit-----GqLG~E~WA~Evv~eLk~eyp~ik~avitpFe 81 (180)
T COG4474 20 KDPEVSYIKKAIKKKLEALLEEGLEWVLIT-----GQLGFELWAAEVVIELKEEYPHIKLAVITPFE 81 (180)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCceEEEEe-----ccccHHHHHHHHHHHHHhhCCCeeEEEEechh
Confidence 555555444433334444 6788887774 3788999999999999999983 57764
No 37
>KOG1004|consensus
Probab=34.23 E-value=1.5e+02 Score=20.53 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=28.5
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVE 46 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~ 46 (80)
...++|+- -+-|.+|..-+.+||+|.- -||.+|+...
T Consensus 156 ~~~R~Ll~--p~~~iLq~vGk~~~FEia~GlNGriWV~ae 193 (230)
T KOG1004|consen 156 GLCRKLLL--PDCPILQTVGKKYPFEIAFGLNGRIWVKAE 193 (230)
T ss_pred HHHHHHHc--CCCcHHHHhhcccceEEEEecCceEEEecc
Confidence 34455554 3566788888999999987 8999999875
No 38
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=33.43 E-value=16 Score=25.81 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=29.0
Q ss_pred CCCCCHH-HHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHH
Q psy15349 16 RKFDDAT-VQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 16 r~~~d~~-vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~ 69 (80)
-.|.|.+ ++.+.. +--++....|.+.+.|. .-|.||+++.|+..+..
T Consensus 217 s~Ya~~~~i~~El~-~A~~l~~k~~~pvIdvT------~kSIEEtA~~Il~~~~~ 264 (269)
T PRK05339 217 SRYASLEQCREELA-EAERLFRREGIPVIDVT------NKSIEETAAKILEILGL 264 (269)
T ss_pred CcCCCHHHHHHHHH-HHHHHHHHcCCCEEECC------CCcHHHHHHHHHHHHHh
Confidence 4466644 233321 11223335688887763 56999999999998853
No 39
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=63 Score=18.89 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=15.0
Q ss_pred hHHhhHHhhCCCCCCHHHHhhc
Q psy15349 6 TIFDAKRLIGRKFDDATVQADM 27 (80)
Q Consensus 6 Ti~~~KRliGr~~~d~~vq~~~ 27 (80)
.-.++|||+-.+-+.|++...+
T Consensus 37 Sm~NlKrFl~lRDs~~~Fd~vk 58 (85)
T COG4545 37 SMANLKRFLHLRDSRPEFDEVK 58 (85)
T ss_pred hhhhHHHHHhhhccchhHHhhh
Confidence 3467889888777777665443
No 40
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=31.45 E-value=59 Score=16.09 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=16.1
Q ss_pred EEchHhHHHHHHhHhHHHhhccC
Q psy15349 53 SFFPEEVGIMWWSLEPVLYLALT 75 (80)
Q Consensus 53 ~~speeI~a~iL~~lk~~~~~~~ 75 (80)
-.+||| .+..+..|..++--+|
T Consensus 11 ~a~~e~-l~~Y~~~L~~Yinlit 32 (36)
T smart00309 11 DASPED-LRQYLAALREYINLIT 32 (36)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhc
Confidence 357888 7888888888775443
No 41
>PF08171 Mad3_BUB1_II: Mad3/BUB1 homology region 2; InterPro: IPR012572 This domain is required for cell cycle arrest induced by spindle assembly checkpoint (SPC) activation. It is also involved in the nuclear accumulation and kinetochore targeting of proteins Bub1p, Bub3p and Mad3p [].; GO: 0000075 cell cycle checkpoint, 0005634 nucleus; PDB: 2I3T_D 2I3S_F.
Probab=31.30 E-value=28 Score=19.66 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=12.5
Q ss_pred eEEee-CCCcc-eEEEE----ECCcceEEchHhHHHHH
Q psy15349 32 FTVVS-DGGKP-KIQVE----YKGETKSFFPEEVGIMW 63 (80)
Q Consensus 32 f~i~~-~~g~~-~~~v~----~~~~~~~~speeI~a~i 63 (80)
|++++ .++.+ .+.++ |.+...+||.+||+|+-
T Consensus 16 y~li~~~gkKpEki~~N~dLlYp~~~eE~s~eEiLA~s 53 (68)
T PF08171_consen 16 YKLIENPGKKPEKIDCNFDLLYPDDEEEYSLEEILAIS 53 (68)
T ss_dssp -----------EEESS-HHHHCTTSSSB--HHHHHHHH
T ss_pred EEEeeCCCCCceeEEeeeEeEecCCCceecHHHHHHHH
Confidence 66776 44443 22222 45666799999999963
No 42
>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []. It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.
Probab=30.63 E-value=4.8 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=17.2
Q ss_pred chhHHhhHHhhCCCCCCHHHHhhcccCCeEE
Q psy15349 4 NNTIFDAKRLIGRKFDDATVQADMKHWPFTV 34 (80)
Q Consensus 4 ~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i 34 (80)
.+..|++|=++|+ |||.+....+++--.|
T Consensus 27 ~~p~f~v~vllG~--dep~l~v~Ar~L~~~i 55 (90)
T PF10178_consen 27 DNPTFTVKVLLGK--DEPLLHVYARQLIEFI 55 (90)
T ss_dssp CS--EEEEEEES-----HHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecC--CcHHHHHHHHHHHHHH
Confidence 4567788889999 8999887766554444
No 43
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=29.74 E-value=30 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.3
Q ss_pred chHhHHHHHHhHh
Q psy15349 55 FPEEVGIMWWSLE 67 (80)
Q Consensus 55 speeI~a~iL~~l 67 (80)
-|+||...||..+
T Consensus 4 LP~Eil~~If~~L 16 (47)
T PF12937_consen 4 LPDEILLEIFSYL 16 (47)
T ss_dssp S-HHHHHHHHTTS
T ss_pred hHHHHHHHHHhcC
Confidence 3899999999876
No 44
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=29.64 E-value=21 Score=23.85 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=34.4
Q ss_pred hHHhhCCCCCCHHHHhhcccCCeEE---ee-CCCcceEEEEECCcceEEchHhHHHHHHhHhH
Q psy15349 10 AKRLIGRKFDDATVQADMKHWPFTV---VS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEP 68 (80)
Q Consensus 10 ~KRliGr~~~d~~vq~~~~~~pf~i---~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk 68 (80)
.+||-||.|++..++.....--+-+ .. +.-...++|. ...-||+|+...++..+.
T Consensus 97 ~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evd----tt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 97 YERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVD----TTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEE----CCCCCHHHHHHHHHHHHc
Confidence 5699999999988765322111111 11 2234456665 445689999999988776
No 45
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=29.41 E-value=62 Score=18.47 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=17.3
Q ss_pred eEEchHhHHHHHHhHhHHHhhccC
Q psy15349 52 KSFFPEEVGIMWWSLEPVLYLALT 75 (80)
Q Consensus 52 ~~~speeI~a~iL~~lk~~~~~~~ 75 (80)
+.++||||..+-.+.+.+..+++.
T Consensus 33 ~~I~PEeIv~iH~~~v~~l~~~~~ 56 (77)
T PF08673_consen 33 KDISPEEIVEIHKSAVQELSPSLP 56 (77)
T ss_dssp TT--HHHHHHHHHHHHHHH-TTS-
T ss_pred cCCCHHHHHHHHHHHHHHHccccH
Confidence 457999999999999998888763
No 46
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=29.08 E-value=36 Score=22.55 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.3
Q ss_pred CcceEEEEECCcceEEchHhHHHHHHh
Q psy15349 39 GKPKIQVEYKGETKSFFPEEVGIMWWS 65 (80)
Q Consensus 39 g~~~~~v~~~~~~~~~speeI~a~iL~ 65 (80)
|.+.......++.+..+|+|++.++|+
T Consensus 92 G~~VaTTskPd~~K~i~p~e~a~~~l~ 118 (173)
T PF04407_consen 92 GTPVATTSKPDEKKAISPEEVAEMALR 118 (173)
T ss_pred CceeEecCCCCCCCCCCHHHHHHHHhc
Confidence 555444445678889999999998875
No 47
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=28.15 E-value=96 Score=18.77 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.3
Q ss_pred eCCCcc-eEEEEECCcceEEchHhHHHHHHhHh
Q psy15349 36 SDGGKP-KIQVEYKGETKSFFPEEVGIMWWSLE 67 (80)
Q Consensus 36 ~~~g~~-~~~v~~~~~~~~~speeI~a~iL~~l 67 (80)
.++|.. .+.| ...+++++|...+|+|+
T Consensus 7 ~~dG~tk~VNV-----~~c~~a~eI~~rvLKKf 34 (105)
T PF14847_consen 7 LEDGSTKTVNV-----SGCFNAQEIKRRVLKKF 34 (105)
T ss_dssp ETTTEEEEEE-------S--HHHHHHHHHHHHH
T ss_pred CCCCcEEEEEE-----CCCCCHHHHHHHHHHHc
Confidence 355654 3334 35789999999999997
No 48
>PRK13621 psbV cytochrome c-550; Provisional
Probab=27.64 E-value=1.7e+02 Score=19.40 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=21.2
Q ss_pred CcceEEEEECCcceEEchHhHHHHHHhHhHHHhh
Q psy15349 39 GKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYL 72 (80)
Q Consensus 39 g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~ 72 (80)
+.+.+.++..|+...||++++.+= +++...-|
T Consensus 46 ~~~~v~~~~~g~~~~~s~~d~~~G--~~lF~~~C 77 (170)
T PRK13621 46 EPVELPLDAAGETQTFSPEQLTDG--KQLFDSNC 77 (170)
T ss_pred CceEeeeCCCCCeEEeCHHHHHhH--HHHHHHHH
Confidence 344455555677889999999875 55554444
No 49
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=27.60 E-value=1.3e+02 Score=17.22 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=28.2
Q ss_pred hHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEE-CCcceEE---chHhHHHHHHhHhHHHhhccC
Q psy15349 10 AKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEY-KGETKSF---FPEEVGIMWWSLEPVLYLALT 75 (80)
Q Consensus 10 ~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~-~~~~~~~---speeI~a~iL~~lk~~~~~~~ 75 (80)
++|++|...++ |-|++.. .+|.-.|++.. .+....+ |+..++.-+=.+|| .||.+.
T Consensus 9 i~Rll~~~~~~---------f~~~~~~~~~~~d~F~l~~~~~gki~I~G~s~vala~Gl~~YLk-~~c~~~ 69 (86)
T PF12971_consen 9 IERLLPEHASQ---------FTFELIPSSNGKDVFELSSADNGKIVIRGNSGVALASGLNWYLK-YYCHVH 69 (86)
T ss_dssp HHHHC-GGGGG---------EEEEE---BTTBEEEEEEE-SSS-EEEEESSHHHHHHHHHHHHH-HHS--B
T ss_pred HHhhcccccce---------EEEEEecCCCCCCEEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH-HHhCce
Confidence 56777643332 4456655 45777888876 5544444 56655555545554 455554
No 50
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=26.23 E-value=51 Score=21.58 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=33.7
Q ss_pred CeEEeeCCCcceEEEEE--CCcceEEchHhHHHHHHhHhHHHhhccCc
Q psy15349 31 PFTVVSDGGKPKIQVEY--KGETKSFFPEEVGIMWWSLEPVLYLALTP 76 (80)
Q Consensus 31 pf~i~~~~g~~~~~v~~--~~~~~~~speeI~a~iL~~lk~~~~~~~~ 76 (80)
.|.|.+++|...|.|.- -.....+..++.++.-|.++++-.+-+-|
T Consensus 20 ~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~ 67 (159)
T COG4894 20 AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLP 67 (159)
T ss_pred ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccc
Confidence 47888899999999862 11233477888888888888887776654
No 51
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=25.67 E-value=1.4e+02 Score=23.33 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=28.3
Q ss_pred hcccCCeEEee-----CC-------CcceEEEEECCcceEEchHhHHHHHHhHh
Q psy15349 26 DMKHWPFTVVS-----DG-------GKPKIQVEYKGETKSFFPEEVGIMWWSLE 67 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~-------g~~~~~v~~~~~~~~~speeI~a~iL~~l 67 (80)
.....||-|+- ++ |.+.+.-....+...++.+++.+.+..++
T Consensus 484 DeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 484 DEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred hccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 34578998653 23 66666555555667788999988877654
No 52
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=25.38 E-value=1.4e+02 Score=16.89 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHhhcccCCeEEeeCCCcceEEEEECCcceE----------EchHhHHHHHHhHhHHHh
Q psy15349 23 VQADMKHWPFTVVSDGGKPKIQVEYKGETKS----------FFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 23 vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~----------~speeI~a~iL~~lk~~~ 71 (80)
++......-|.....+|.+.+.|+-.|+-.. ..|+++...|+.-+.+..
T Consensus 14 ~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~ 72 (93)
T PF02575_consen 14 AQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQ 72 (93)
T ss_dssp HHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHH
Confidence 4555556667777778887777764443222 457888888887665543
No 53
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=25.22 E-value=52 Score=15.82 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=15.1
Q ss_pred EchHhHHH------HHHhHhHHHhhccCcc
Q psy15349 54 FFPEEVGI------MWWSLEPVLYLALTPF 77 (80)
Q Consensus 54 ~speeI~a------~iL~~lk~~~~~~~~~ 77 (80)
++.++|+. ..|.++.+.+.|+||-
T Consensus 9 ~~l~~iA~~~g~S~~~f~r~Fk~~~g~tp~ 38 (42)
T PF00165_consen 9 LTLEDIAEQAGFSPSYFSRLFKKETGMTPK 38 (42)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHTSS-HH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCcCHH
Confidence 45555544 4688888888999984
No 54
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=25.03 E-value=2.2e+02 Score=21.51 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=30.7
Q ss_pred hhcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 25 ADMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 25 ~~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
.+++..|+.|+- ++|.+.+.-...++...++.+++...+-..++++
T Consensus 340 ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~~ 390 (477)
T PRK08661 340 WELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEI 390 (477)
T ss_pred HHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHHH
Confidence 356788998763 3566655555556667788888887776555443
No 55
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=24.11 E-value=54 Score=22.46 Aligned_cols=29 Identities=41% Similarity=0.652 Sum_probs=22.5
Q ss_pred chhHHhhHHhhCCCCCCHHHHhhcccCCe
Q psy15349 4 NNTIFDAKRLIGRKFDDATVQADMKHWPF 32 (80)
Q Consensus 4 ~nTi~~~KRliGr~~~d~~vq~~~~~~pf 32 (80)
.+|-|-+|||+|..++|...........|
T Consensus 156 GsT~~vAk~l~G~~~~d~~~~~g~~~q~Y 184 (217)
T PF02593_consen 156 GSTWFVAKRLIGKEVEDAPEKAGLAHQHY 184 (217)
T ss_pred ccHHHHHHHhcCCccchhhhhhhhhheec
Confidence 67899999999999999877665443334
No 56
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=23.94 E-value=29 Score=19.41 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=12.9
Q ss_pred eEEchHhHHHHHHhHhHHHhhcc
Q psy15349 52 KSFFPEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 52 ~~~speeI~a~iL~~lk~~~~~~ 74 (80)
..+|++||+|.+-++-.+-|..|
T Consensus 28 ~~vs~~el~a~lrke~~~~y~~c 50 (68)
T PF07308_consen 28 FEVSKAELSAWLRKEDEKGYKEC 50 (68)
T ss_pred CccCHHHHHHHHCCCCCcccccc
Confidence 45566666666655544444444
No 57
>KOG1584|consensus
Probab=23.73 E-value=65 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.2
Q ss_pred CcchhHHhhHHhhCCCCCCHHHHh
Q psy15349 2 NPNNTIFDAKRLIGRKFDDATVQA 25 (80)
Q Consensus 2 np~nTi~~~KRliGr~~~d~~vq~ 25 (80)
+|+..|..+-+|+|+.+.+.+.+.
T Consensus 201 dp~~~ikrlaeFLg~~~~~Ee~~~ 224 (297)
T KOG1584|consen 201 DPKGEIKKLAEFLGCPFTKEEEDK 224 (297)
T ss_pred CHHHHHHHHHHHhCCCCCHHHHhh
Confidence 788899999999999999987765
No 58
>PF01913 FTR: Formylmethanofuran-tetrahydromethanopterin formyltransferase; InterPro: IPR022667 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5H_E 1M5S_C 1FTR_C 2FHJ_B 2FHK_D.
Probab=23.62 E-value=2e+02 Score=18.56 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=26.7
Q ss_pred CCCcceEEEEECCcceEEchHhHHHHHHhHhHHHhhcc
Q psy15349 37 DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 37 ~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~~~~ 74 (80)
+||.|++.|. --.++...+...++.++.+-.|-|
T Consensus 66 PDGRPGv~il----~f~~~~~~L~~~l~~RigQcVLT~ 99 (144)
T PF01913_consen 66 PDGRPGVSIL----IFAMSKKKLEKQLLERIGQCVLTC 99 (144)
T ss_dssp TTSS-EEEEE----EEESSHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCcEEEE----EEeCCHHHHHHHHHHHccCcccCC
Confidence 6899999986 336788999999999998876654
No 59
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=23.45 E-value=2.6e+02 Score=21.10 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=29.7
Q ss_pred hhcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHH
Q psy15349 25 ADMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 25 ~~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~ 69 (80)
.+++..||.++- ++|.+.+.-...++...++.+++.+.+-..+++
T Consensus 334 Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~ 383 (472)
T TIGR00408 334 WEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNN 383 (472)
T ss_pred HHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHH
Confidence 356788998753 356666655555666778888887776554443
No 60
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=23.19 E-value=2.8e+02 Score=19.70 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=34.7
Q ss_pred CCCCHHHHhhcccCC-eEEeeCCCcceEEEEECC---cceEEchHhHHHHHHhHhHHHh
Q psy15349 17 KFDDATVQADMKHWP-FTVVSDGGKPKIQVEYKG---ETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 17 ~~~d~~vq~~~~~~p-f~i~~~~g~~~~~v~~~~---~~~~~speeI~a~iL~~lk~~~ 71 (80)
.+.+.+|.+.+...| |.|.+++|.+.+....++ -..-++..|=+..+|.++|..=
T Consensus 69 AL~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~ 127 (270)
T TIGR00995 69 TLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRK 127 (270)
T ss_pred cCCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhC
Confidence 456677777788899 777778888865543322 1223455554566777776543
No 61
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=22.93 E-value=1.6e+02 Score=16.59 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=20.9
Q ss_pred CCcceEEEEECC--c--ceEEchHhHHHHHHhHhHHH
Q psy15349 38 GGKPKIQVEYKG--E--TKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 38 ~g~~~~~v~~~~--~--~~~~speeI~a~iL~~lk~~ 70 (80)
||.|.|+|...+ + -.--||.+.=.+|++++...
T Consensus 1 d~~P~F~Vt~~d~p~~~~~g~s~~~~W~~i~~~v~~~ 37 (86)
T PF05965_consen 1 DGGPLFEVTSEDDPGEVFEGSSPTEAWSEILERVNEA 37 (86)
T ss_dssp --SEEEEEEETT-GGG-EEESSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCEEEeCCHHHHHHHHHHHHHHH
Confidence 355666666544 1 12348999999999988663
No 62
>PLN02975 complex I subunit
Probab=22.68 E-value=50 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=15.7
Q ss_pred HhhHHhhCCCCCCHHHHhhc
Q psy15349 8 FDAKRLIGRKFDDATVQADM 27 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~ 27 (80)
.+.+||+|-+-++.+|+...
T Consensus 77 ~S~~Rf~G~~EN~rEV~~~~ 96 (97)
T PLN02975 77 NSAGRLMGFFPNEGEVARYQ 96 (97)
T ss_pred ccchhhcCCCCCHHHHHhcc
Confidence 35689999988888887653
No 63
>PF09105 SelB-wing_1: Elongation factor SelB, winged helix ; InterPro: IPR015189 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 1". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; PDB: 2V9V_A 1LVA_A 2PLY_A.
Probab=22.66 E-value=48 Score=17.73 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=10.2
Q ss_pred chHhHHHHHHhHhHH
Q psy15349 55 FPEEVGIMWWSLEPV 69 (80)
Q Consensus 55 speeI~a~iL~~lk~ 69 (80)
|||.|.|.|+.+-++
T Consensus 2 spekilaqiiqehre 16 (61)
T PF09105_consen 2 SPEKILAQIIQEHRE 16 (61)
T ss_dssp -HHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHc
Confidence 688999988876543
No 64
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=22.46 E-value=1.8e+02 Score=21.15 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=38.8
Q ss_pred chhHHhhHHhhCCCCCCHHHHhhcccCC--eEEee-CCCcceEEEEECCcceEEchHhHHHHH
Q psy15349 4 NNTIFDAKRLIGRKFDDATVQADMKHWP--FTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMW 63 (80)
Q Consensus 4 ~nTi~~~KRliGr~~~d~~vq~~~~~~p--f~i~~-~~g~~~~~v~~~~~~~~~speeI~a~i 63 (80)
=..|..+|+-+|...|= .......+| |.++. .+|....++..-+..-.+|.-|-.++.
T Consensus 120 L~ki~~l~~dLGLP~Df--~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~ 180 (335)
T PF11955_consen 120 LSKIAHLRRDLGLPDDF--RDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEK 180 (335)
T ss_pred HHHHHHHHHHcCCChhh--ccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhh
Confidence 34678888888876532 223344556 88888 888888888765556666766666553
No 65
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.07 E-value=73 Score=21.24 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=37.8
Q ss_pred HHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEE-chHhHHHHHHh
Q psy15349 7 IFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSF-FPEEVGIMWWS 65 (80)
Q Consensus 7 i~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~-speeI~a~iL~ 65 (80)
..++++|+|...+.++++..+..+|-.+...=|.+.+. .+++.-.+ -|++=+..|=.
T Consensus 32 lsSLn~~l~~e~~~~em~~~L~~f~~~~~~~lG~v~vs--~k~eRFCf~IP~~g~~YVhe 89 (175)
T PF12993_consen 32 LSSLNHFLGTEDDEEEMQEALEEFPEYVKDRLGEVEVS--HKGERFCFHIPEEGSEYVHE 89 (175)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhHHHHHhhhccEEEE--ecCcEEEEEcCcHHHHHHHh
Confidence 46788999999988888888888776666566776544 34433333 35555554433
No 66
>KOG3493|consensus
Probab=20.78 E-value=39 Score=19.14 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=12.9
Q ss_pred CcchhHHhhHHhhCC
Q psy15349 2 NPNNTIFDAKRLIGR 16 (80)
Q Consensus 2 np~nTi~~~KRliGr 16 (80)
||..||-++|.+|..
T Consensus 19 n~dDtiGD~KKliaa 33 (73)
T KOG3493|consen 19 NTDDTIGDLKKLIAA 33 (73)
T ss_pred CCcccccCHHHHHHH
Confidence 788999999999853
Done!