Query psy15349
Match_columns 80
No_of_seqs 110 out of 1045
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 18:38:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d2f_A Heat shock protein homo 99.5 7.3E-15 2.5E-19 110.7 6.2 74 1-74 59-136 (675)
2 1yuw_A Heat shock cognate 71 k 99.5 8.7E-15 3E-19 107.8 6.0 70 1-70 61-130 (554)
3 3i33_A Heat shock-related 70 k 99.4 3.6E-13 1.2E-17 94.6 6.2 71 1-71 80-150 (404)
4 4b9q_A Chaperone protein DNAK; 99.4 2.2E-13 7.5E-18 101.3 5.4 66 1-70 60-126 (605)
5 3qfu_A 78 kDa glucose-regulate 99.3 1.2E-12 4.1E-17 91.3 5.9 70 2-71 76-145 (394)
6 2kho_A Heat shock protein 70; 99.3 1.1E-12 3.7E-17 97.6 4.6 66 1-70 60-126 (605)
7 1dkg_D Molecular chaperone DNA 99.1 7.9E-11 2.7E-15 82.1 6.2 66 1-70 60-126 (383)
8 4gni_A Putative heat shock pro 98.7 3E-09 1E-13 74.9 2.0 68 2-71 71-142 (409)
9 2v7y_A Chaperone protein DNAK; 97.4 0.0001 3.5E-09 53.6 3.3 42 1-70 59-100 (509)
10 1v95_A Nuclear receptor coacti 69.6 5.1 0.00017 24.4 3.3 46 26-71 57-109 (130)
11 2ja9_A Exosome complex exonucl 50.2 14 0.00049 23.3 3.0 37 8-45 100-137 (175)
12 2nn6_G Exosome complex exonucl 48.7 9.3 0.00032 26.1 2.0 35 8-44 219-254 (289)
13 1bm4_A Protein (moloney murine 48.3 20 0.0007 16.6 2.6 22 56-77 11-32 (32)
14 2ba0_A Archeal exosome RNA bin 45.7 9.8 0.00034 24.9 1.7 35 8-44 145-180 (229)
15 2je6_I RRP4, exosome complex R 38.1 12 0.00041 24.9 1.2 37 8-46 164-201 (251)
16 2kxw_B Sodium channel protein 35.5 31 0.0011 15.2 2.1 19 56-74 4-22 (27)
17 1w53_A Phosphoserine phosphata 34.0 27 0.00094 19.6 2.1 23 52-74 40-62 (84)
18 1g6u_A Domain swapped dimer; d 33.2 16 0.00055 18.0 0.9 10 53-62 16-25 (48)
19 4ehu_A Activator of 2-hydroxyi 32.7 37 0.0013 21.8 3.0 34 34-71 17-50 (276)
20 1s3a_A NADH-ubiquinone oxidore 30.6 76 0.0026 17.8 6.2 54 9-64 35-95 (102)
21 2x5c_A Hypothetical protein OR 30.5 76 0.0026 18.5 3.7 39 32-70 64-103 (131)
22 2j6y_A Phosphoserine phosphata 29.4 35 0.0012 20.2 2.1 24 52-75 40-63 (111)
23 1qey_A MNT-C, protein (regulat 29.2 46 0.0016 15.2 2.1 18 56-73 12-29 (31)
24 3mgb_A TEG12; sulfotransferase 27.8 26 0.00089 24.2 1.6 32 2-33 207-240 (319)
25 2i3s_B Checkpoint serine/threo 26.7 23 0.00078 16.9 0.8 16 47-62 13-28 (36)
26 3uws_A Hypothetical protein; c 25.2 93 0.0032 18.3 3.6 20 54-73 83-102 (126)
27 2z0s_A Probable exosome comple 25.0 29 0.001 22.6 1.4 36 8-45 157-193 (235)
28 2cxi_A Phenylalanyl-tRNA synth 24.9 65 0.0022 22.3 3.2 40 7-48 287-326 (348)
29 3ikl_A DNA polymerase subunit 24.5 87 0.003 22.7 3.9 44 26-69 401-449 (459)
30 2l53_B CAM, voltage-gated sodi 24.4 61 0.0021 14.8 2.1 17 57-73 5-21 (31)
31 3plu_A Ubiquitin-like modifier 24.1 24 0.00081 20.2 0.7 14 2-15 39-52 (93)
32 3uh0_A Threonyl-tRNA synthetas 23.4 58 0.002 23.3 2.8 43 26-68 409-457 (460)
33 4e6z_A Apicoplast TIC22, putat 23.0 58 0.002 22.0 2.6 46 17-63 64-113 (279)
34 2i3t_B Spindle assembly checkp 22.7 28 0.00096 18.0 0.8 12 51-62 24-35 (54)
35 1nj1_A PROR, proline-tRNA synt 22.6 1.1E+02 0.0037 22.1 4.1 45 26-70 366-415 (501)
36 4hvc_A Bifunctional glutamate/ 22.3 69 0.0024 23.5 3.1 45 26-70 366-415 (519)
37 1hgv_A PH75 inovirus major coa 22.3 43 0.0015 16.4 1.3 17 53-69 2-18 (46)
38 2wzo_A Transforming growth fac 22.1 1.4E+02 0.0046 17.9 5.3 40 31-70 57-100 (146)
39 3osj_A Phycobilisome LCM core- 20.8 51 0.0017 20.5 1.8 13 8-20 92-104 (147)
40 1aqu_A EST, estrogen sulfotran 20.5 39 0.0013 22.3 1.3 31 2-32 201-231 (297)
No 1
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.54 E-value=7.3e-15 Score=110.70 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=67.5
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH---hhcc
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL---YLAL 74 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~---~~~~ 74 (80)
+||+||++++||+||+.++|+.+|.+.++|||+++. ++|.+++.+.+.|+.+.|+|+||+|++|++||+. |++.
T Consensus 59 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~ 136 (675)
T 3d2f_A 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKA 136 (675)
T ss_dssp TCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999988 7899999998888888999999999999999864 5553
No 2
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.53 E-value=8.7e-15 Score=107.83 Aligned_cols=70 Identities=70% Similarity=1.163 Sum_probs=65.5
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++|+|+.++...+.|||+++..+|.+.+.+.+.+..+.++|+||+|++|++||+.
T Consensus 61 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ 130 (554)
T 1yuw_A 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEI 130 (554)
T ss_dssp TCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred hChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999888899999999988889999999999999999853
No 3
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.40 E-value=3.6e-13 Score=94.63 Aligned_cols=71 Identities=73% Similarity=1.179 Sum_probs=66.3
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHHh
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~ 71 (80)
.+|.|+++++||+||+.++|+.++...+.|||.++.++|.+.+.+.+.++...++|+||++++|+++++..
T Consensus 80 ~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a 150 (404)
T 3i33_A 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIA 150 (404)
T ss_dssp TCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHH
T ss_pred hChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999888899999999999999998753
No 4
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.40 E-value=2.2e-13 Score=101.33 Aligned_cols=66 Identities=33% Similarity=0.589 Sum_probs=60.4
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||.||++++||+||++|+||.++...+.+||+++. ++|.+.+.+. .+.++|+||+|++|++|++.
T Consensus 60 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ 126 (605)
T 4b9q_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEVLKKMKKT 126 (605)
T ss_dssp TCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEET----TEEECHHHHHHHHHHHHHHH
T ss_pred hCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEEC----CEEECHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999988 8898888773 57899999999999999765
No 5
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.34 E-value=1.2e-12 Score=91.32 Aligned_cols=70 Identities=51% Similarity=0.808 Sum_probs=65.6
Q ss_pred CcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHHh
Q psy15349 2 NPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 2 np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~ 71 (80)
||.|+++++||+||++++|+.++...+.|||.++..+|.+.+.+.+.++.+.++|+||++++|+++++.-
T Consensus 76 ~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a 145 (394)
T 3qfu_A 76 NPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIA 145 (394)
T ss_dssp CGGGEECCGGGTTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHhCCCCCcHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999889999999998888899999999999999998753
No 6
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.32 E-value=1.1e-12 Score=97.62 Aligned_cols=66 Identities=35% Similarity=0.599 Sum_probs=59.4
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+||+||++++||+||++|+|+.++...+.+||+++. .+|.+.+.+ . .+.++|+||+|++|++|++.
T Consensus 60 ~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~--g~~~~~~ei~a~~L~~l~~~ 126 (605)
T 2kho_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--K--GQKMAPPQISAEVLKKMKKT 126 (605)
T ss_dssp TCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--T--TEEECHHHHHHHHHHHHHHH
T ss_pred hCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999886 789888887 3 36899999999999999875
No 7
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.13 E-value=7.9e-11 Score=82.14 Aligned_cols=66 Identities=35% Similarity=0.599 Sum_probs=58.3
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
.||+|+++++||+||+.++|++++...+.+||.++. .+|.+.+.+ + .+.++|+||++++|+++++.
T Consensus 60 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~--g~~~~~~~i~~~~L~~l~~~ 126 (383)
T 1dkg_D 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--K--GQKMAPPQISAEVLKKMKKT 126 (383)
T ss_dssp TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--T--TEEECHHHHHHHHHHHHHHH
T ss_pred hCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--C--CEEEcHHHHHHHHHHHHHHH
Confidence 379999999999999999999999998999999876 788887777 3 35899999999999999764
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.73 E-value=3e-09 Score=74.87 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=56.8
Q ss_pred CcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEEC----CcceEEchHhHHHHHHhHhHHHh
Q psy15349 2 NPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYK----GETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 2 np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~----~~~~~~speeI~a~iL~~lk~~~ 71 (80)
||+|+++++||++|++++|+.++.. .+++.+...+|.+.+.+... ++.+.++|+||++++|+++++.-
T Consensus 71 ~~~~~i~~~K~llg~~~~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a 142 (409)
T 4gni_A 71 NPKNTVAYFRDILGQDFKSVDPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAA 142 (409)
T ss_dssp CGGGEEESCGGGTTCCGGGCCCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHH
T ss_pred ChHhhHHHHHHHhCCCccchhhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHH
Confidence 7999999999999999999776554 45666667889999988765 46789999999999999998764
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=97.39 E-value=0.0001 Score=53.59 Aligned_cols=42 Identities=31% Similarity=0.608 Sum_probs=32.6
Q ss_pred CCcchhHHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 1 ~np~nTi~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
.|| ||++++||+||+.|. + ++ +| +.++|+||++++|++|++.
T Consensus 59 ~~p-~~~~~~Kr~lg~p~~--------------~---------~~--~g--~~~~~~ei~a~~L~~l~~~ 100 (509)
T 2v7y_A 59 TNP-NTIISIKRHMGTDYK--------------V---------EI--EG--KQYTPQEISAIILQYLKSY 100 (509)
T ss_dssp TCS-SEEECGGGTTTSCCC--------------E---------EE--TT--EEECHHHHHHHHHHHHHHH
T ss_pred hCC-CcHHHHHHhcCCCcE--------------E---------EE--CC--EEEcHHHHHHHHHHHHHHH
Confidence 378 999999999998432 1 12 22 4789999999999999864
No 10
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=69.63 E-value=5.1 Score=24.41 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=34.5
Q ss_pred hcccCCeEEee-----CCCcceEEEEEC--CcceEEchHhHHHHHHhHhHHHh
Q psy15349 26 DMKHWPFTVVS-----DGGKPKIQVEYK--GETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~g~~~~~v~~~--~~~~~~speeI~a~iL~~lk~~~ 71 (80)
.+..+||-++- ++|.+.+..... ++...++.+++.+++..++..+.
T Consensus 57 ~~~kvPy~lVVG~kE~e~~sVsVR~r~~~~~e~~~m~lde~i~~l~~~~~~~~ 109 (130)
T 1v95_A 57 SRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYK 109 (130)
T ss_dssp HHHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEechHHhcCeeEEEecCCCCCccCccCHHHHHHHHHHHHHHHh
Confidence 34679998763 367887776655 55667999999999998887553
No 11
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=50.20 E-value=14 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.040 Sum_probs=26.2
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQV 45 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v 45 (80)
.-++|++|++-.. .++...+..+|+|.- .||.+|+.-
T Consensus 100 ~~v~rl~~~~~~~-~l~~l~~~~~~ei~vG~NG~IWi~~ 137 (175)
T 2ja9_A 100 NFARQLLFNNDFP-LLKVLAAHTKFEVAIGLNGKIWVKC 137 (175)
T ss_dssp HHHHHHHHCTTCC-HHHHHHTTCCCEEEEETTTEEEEEC
T ss_pred HHhhHHhcCCCcc-hHHhhhccCCeEEEEECCcEEEEec
Confidence 4578999853322 355555678999877 999999763
No 12
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.69 E-value=9.3 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=26.3
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQ 44 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~ 44 (80)
.-++|++|+... -++...+.++|+|.- .||.+|+.
T Consensus 219 ~lvrrl~~~~~~--~l~~L~~~~~~eI~vG~NG~IWI~ 254 (289)
T 2nn6_G 219 GLIRKLLAPDCE--IIQEVGKLYPLEIVFGMNGRIWVK 254 (289)
T ss_dssp HHHHHHHCTTCS--HHHHTTCSSSCCCEEETTTEEEEC
T ss_pred HHhhhhhcCchh--HHHHhcccCCeEEEEECCcEEEEe
Confidence 467899997543 355555678999876 99999976
No 13
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=48.29 E-value=20 Score=16.63 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.5
Q ss_pred hHhHHHHHHhHhHHHhhccCcc
Q psy15349 56 PEEVGIMWWSLEPVLYLALTPF 77 (80)
Q Consensus 56 peeI~a~iL~~lk~~~~~~~~~ 77 (80)
++|==+.+|.+|.+.|.--|||
T Consensus 11 ~~EsPs~FlerL~eayR~yTP~ 32 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRRYTPY 32 (32)
T ss_dssp GGGHHHHHHHHHHHHHHHTSCC
T ss_pred CCCChHHHHHHHHHHHHhcCCC
Confidence 4555678999999999999996
No 14
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=45.66 E-value=9.8 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.1
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQ 44 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~ 44 (80)
..++|++|+.- .-++...+.++|.|.- .||.+|+.
T Consensus 145 ~~v~rl~~~~~--~~l~~l~~~~~~ei~vG~NG~IWi~ 180 (229)
T 2ba0_A 145 ARVPRVIGKKG--SMIKLLKSELDVQIVVGQNGLIWVN 180 (229)
T ss_dssp GGHHHHHCGGG--HHHHHHHHHHTCEEEECTTSEEEEE
T ss_pred HHhHHHhcCCc--hHHHHhcccCCeEEEEECCcEEEEe
Confidence 45789998642 2345555578999866 99999976
No 15
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=38.07 E-value=12 Score=24.89 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=21.9
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVE 46 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v~ 46 (80)
..++|++|++ ...++...+.++|.|.- .||.+|+.-.
T Consensus 164 ~~v~rl~~~~--~~~l~~l~~~~~~ei~vG~NG~IWi~~~ 201 (251)
T 2je6_I 164 VKVPRVIGKN--KSMYETLTSKSGCSIFVANNGRIWATCP 201 (251)
T ss_dssp GGHHHHHCGG--GHHHHHHHTTC---CEECTTSEEEC---
T ss_pred HHhHHHhcCc--chHHHHhcccCCeEEEEECCcEEEEeCC
Confidence 4578999964 22355555678999866 9999997753
No 16
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=35.52 E-value=31 Score=15.23 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=14.9
Q ss_pred hHhHHHHHHhHhHHHhhcc
Q psy15349 56 PEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 56 peeI~a~iL~~lk~~~~~~ 74 (80)
-||++|.++.+.---|++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999887777653
No 17
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=33.98 E-value=27 Score=19.60 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEchHhHHHHHHhHhHHHhhcc
Q psy15349 52 KSFFPEEVGIMWWSLEPVLYLAL 74 (80)
Q Consensus 52 ~~~speeI~a~iL~~lk~~~~~~ 74 (80)
+.++||||.+.--..+.++++.+
T Consensus 40 k~i~PEeiV~iHk~~i~el~~~l 62 (84)
T 1w53_A 40 HQIPPEEIISIHRKVLKELYPSL 62 (84)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTS
T ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999988876
No 18
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.18 E-value=16 Score=17.96 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=8.1
Q ss_pred EEchHhHHHH
Q psy15349 53 SFFPEEVGIM 62 (80)
Q Consensus 53 ~~speeI~a~ 62 (80)
-|||||++|.
T Consensus 16 gfspeelaal 25 (48)
T 1g6u_A 16 GFSPEELAAL 25 (48)
T ss_dssp TCSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4899998875
No 19
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=32.72 E-value=37 Score=21.84 Aligned_cols=34 Identities=6% Similarity=-0.269 Sum_probs=22.9
Q ss_pred EeeCCCcceEEEEECCcceEEchHhHHHHHHhHhHHHh
Q psy15349 34 VVSDGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVLY 71 (80)
Q Consensus 34 i~~~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~~ 71 (80)
+++++|.+...... ....|.|+++.+|+++++..
T Consensus 17 v~d~~~~il~~~~~----~~g~~~e~a~~vl~~~~~~a 50 (276)
T 4ehu_A 17 ILKNGEDIVASETI----SSGTGTTGPSRVLEKLYGKT 50 (276)
T ss_dssp EEETTTEEEEEEEE----SCCTTSSHHHHHHHHHHHHH
T ss_pred EEECCCeEEEEEEe----cCCCCHHHHHHHHHHHHHHC
Confidence 44567776655432 23578899999999987653
No 20
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=30.59 E-value=76 Score=17.84 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=33.4
Q ss_pred hhHHhhCCCCCCHHHHhhcccCCeEEeeC-CCcceEEEEECC-cceEE-----chHhHHHHHH
Q psy15349 9 DAKRLIGRKFDDATVQADMKHWPFTVVSD-GGKPKIQVEYKG-ETKSF-----FPEEVGIMWW 64 (80)
Q Consensus 9 ~~KRliGr~~~d~~vq~~~~~~pf~i~~~-~g~~~~~v~~~~-~~~~~-----speeI~a~iL 64 (80)
+++.|+-. .=|.++.....+|+.+... +..|.+.+.|.+ .++.+ +++||...+-
T Consensus 35 G~R~Fl~~--~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~l~n~s~~eI~~~l~ 95 (102)
T 1s3a_A 35 GVRDFIEK--RYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALE 95 (102)
T ss_dssp HHHHHHHH--THHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCHHHHHHHHH
T ss_pred hHHHHHHH--hhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHH
Confidence 34445533 2344777777888888774 447888888854 44444 5677665543
No 21
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=30.53 E-value=76 Score=18.47 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=24.9
Q ss_pred eEEee-CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 32 FTVVS-DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 32 f~i~~-~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
..|++ .||.-...+...+......|..=.+.||+++-+.
T Consensus 64 vsivetkngykylvirhpdggthtvpktdisailkelcev 103 (131)
T 2x5c_A 64 VSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCEV 103 (131)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHHH
T ss_pred eEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHHH
Confidence 45677 7888777777777666665544444466666443
No 22
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=29.41 E-value=35 Score=20.22 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEchHhHHHHHHhHhHHHhhccC
Q psy15349 52 KSFFPEEVGIMWWSLEPVLYLALT 75 (80)
Q Consensus 52 ~~~speeI~a~iL~~lk~~~~~~~ 75 (80)
+.++||||...-...+.+++++++
T Consensus 40 k~I~PEeiV~iHk~~i~~l~~~l~ 63 (111)
T 2j6y_A 40 HQIPPEEIISIHRKVLKELYPSLP 63 (111)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCh
Confidence 457999999999999999988865
No 23
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=29.22 E-value=46 Score=15.21 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=13.3
Q ss_pred hHhHHHHHHhHhHHHhhc
Q psy15349 56 PEEVGIMWWSLEPVLYLA 73 (80)
Q Consensus 56 peeI~a~iL~~lk~~~~~ 73 (80)
.|+|-.+++-.||+.|..
T Consensus 12 se~vKk~vfdtLk~~Y~k 29 (31)
T 1qey_A 12 SELVKKMVFDTLKDLYKK 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456777788888888853
No 24
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Probab=27.78 E-value=26 Score=24.20 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=26.8
Q ss_pred CcchhHHhhHHhh--CCCCCCHHHHhhcccCCeE
Q psy15349 2 NPNNTIFDAKRLI--GRKFDDATVQADMKHWPFT 33 (80)
Q Consensus 2 np~nTi~~~KRli--Gr~~~d~~vq~~~~~~pf~ 33 (80)
||..++..+-+++ |..+++..++...+...|.
T Consensus 207 Dp~~~v~kI~~FL~~G~~~~~e~l~~iv~~~SFe 240 (319)
T 3mgb_A 207 DPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLE 240 (319)
T ss_dssp CHHHHHHHHHHHHTCSSCCCHHHHHHHHHTTSHH
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCHH
Confidence 6788888888999 9999999888877766664
No 25
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=26.71 E-value=23 Score=16.87 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=11.7
Q ss_pred ECCcceEEchHhHHHH
Q psy15349 47 YKGETKSFFPEEVGIM 62 (80)
Q Consensus 47 ~~~~~~~~speeI~a~ 62 (80)
|.+....+|-|||.|+
T Consensus 13 YP~~~~E~s~eEllA~ 28 (36)
T 2i3s_B 13 YPENDEEFNTEEILAM 28 (36)
T ss_dssp STTSSCCCCHHHHHHH
T ss_pred cCCCCcEecHHHHHHH
Confidence 3444678999999885
No 26
>3uws_A Hypothetical protein; clostripain family protein, peptidase_C11, structural genomi center for structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides merdae}
Probab=25.24 E-value=93 Score=18.31 Aligned_cols=20 Identities=15% Similarity=-0.208 Sum_probs=15.9
Q ss_pred EchHhHHHHHHhHhHHHhhc
Q psy15349 54 FFPEEVGIMWWSLEPVLYLA 73 (80)
Q Consensus 54 ~speeI~a~iL~~lk~~~~~ 73 (80)
..-.++.+.+|+..++.|.+
T Consensus 83 ~~d~~~l~~~l~~~~~~~PA 102 (126)
T 3uws_A 83 SADPDVMRSVIGEVVSQYPA 102 (126)
T ss_dssp TTSHHHHHHHHHHHHHHSCE
T ss_pred cCCHHHHHHHHHHHHHhCCc
Confidence 34456889999999999876
No 27
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.00 E-value=29 Score=22.59 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=24.2
Q ss_pred HhhHHhhCCCCCCHHHHhhcccCCeEEee-CCCcceEEE
Q psy15349 8 FDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQV 45 (80)
Q Consensus 8 ~~~KRliGr~~~d~~vq~~~~~~pf~i~~-~~g~~~~~v 45 (80)
..++|++|++ ...++...+..+|++.- .||.+|+.-
T Consensus 157 ~~~~rl~~~~--~~~l~~l~~~~~~~i~vG~NG~IWi~~ 193 (235)
T 2z0s_A 157 AKVPRVIGRK--MSMLKTLEEKTECKIFVARNGRIHLEC 193 (235)
T ss_dssp GGSGGGTCGG--GHHHHHHHHHHCCEEEEETTTEEEEEC
T ss_pred HHhHHHhcCc--chHHHHhcccCCeEEEEeCCCEEEEec
Confidence 4578888854 22344434467999866 999999653
No 28
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=24.87 E-value=65 Score=22.29 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=30.1
Q ss_pred HHhhHHhhCCCCCCHHHHhhcccCCeEEeeCCCcceEEEEEC
Q psy15349 7 IFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYK 48 (80)
Q Consensus 7 i~~~KRliGr~~~d~~vq~~~~~~pf~i~~~~g~~~~~v~~~ 48 (80)
...+.|++|..++..++...++++-|.+...++. +.|...
T Consensus 287 ~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~~~~--~~V~vP 326 (348)
T 2cxi_A 287 LDYIRKLSGLELNDGEIKELLEKMMYEVEISRGR--AKLKYP 326 (348)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTE--EEEEEC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCeEEeCCCe--EEEECC
Confidence 5678899999999999999999999988543333 444433
No 29
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=24.53 E-value=87 Score=22.71 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=29.4
Q ss_pred hcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHH
Q psy15349 26 DMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~ 69 (80)
++...||.|+- ++|.+.+.-...++...++.+++.+.+...+..
T Consensus 401 d~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 401 DEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 45678999864 346555544445566678899988887766543
No 30
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=24.39 E-value=61 Score=14.76 Aligned_cols=17 Identities=29% Similarity=0.016 Sum_probs=13.0
Q ss_pred HhHHHHHHhHhHHHhhc
Q psy15349 57 EEVGIMWWSLEPVLYLA 73 (80)
Q Consensus 57 eeI~a~iL~~lk~~~~~ 73 (80)
||++|.++.+.---|+.
T Consensus 5 Ee~aA~vIQrA~R~yl~ 21 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLL 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999887655553
No 31
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.09 E-value=24 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=12.4
Q ss_pred CcchhHHhhHHhhC
Q psy15349 2 NPNNTIFDAKRLIG 15 (80)
Q Consensus 2 np~nTi~~~KRliG 15 (80)
+|.+||.++|..|.
T Consensus 39 ~p~DTI~~LK~~I~ 52 (93)
T 3plu_A 39 LGEDSVGDFKKVLS 52 (93)
T ss_dssp ETTSBHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 68999999999885
No 32
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=23.43 E-value=58 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=30.1
Q ss_pred hcccCCeEEee-----CCCcceEEEEECCc-ceEEchHhHHHHHHhHhH
Q psy15349 26 DMKHWPFTVVS-----DGGKPKIQVEYKGE-TKSFFPEEVGIMWWSLEP 68 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~g~~~~~v~~~~~-~~~~speeI~a~iL~~lk 68 (80)
.++..||.|+- ++|.+.+.-...++ ...++.+|+.+.+-..++
T Consensus 409 d~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 409 ILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp HHHTCSEEEEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHH
Confidence 45688999764 35776665545566 678999998887766554
No 33
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=23.04 E-value=58 Score=22.04 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=26.8
Q ss_pred CCCCHHHHhhcccCC-eEEeeCCCcceEEEEECCcc---eEEchHhHHHHH
Q psy15349 17 KFDDATVQADMKHWP-FTVVSDGGKPKIQVEYKGET---KSFFPEEVGIMW 63 (80)
Q Consensus 17 ~~~d~~vq~~~~~~p-f~i~~~~g~~~~~v~~~~~~---~~~speeI~a~i 63 (80)
+|....++..+..+| |.|.+.+|.+.+.. ..+.. --+++++--+++
T Consensus 64 ~~~e~~I~EKL~~VPVF~Itn~~G~Pll~~-~~~~~V~~fF~s~~DA~a~L 113 (279)
T 4e6z_A 64 RYDERPIEEKLEVIPVFLITNYNSSPYIFQ-ENEKQVCYMFLCPYDAENML 113 (279)
T ss_dssp ----CCHHHHSTTSEEEEEECTTCCBCCEE-ETTEEEEEEESSHHHHHHHH
T ss_pred cccHHhHHHHhcCCCEEEEEcCCCCEEEec-CCCCeEEEEECCHHHHHHHH
Confidence 566777888888899 77777888886543 23211 123676666554
No 34
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=22.69 E-value=28 Score=18.02 Aligned_cols=12 Identities=33% Similarity=0.216 Sum_probs=9.4
Q ss_pred ceEEchHhHHHH
Q psy15349 51 TKSFFPEEVGIM 62 (80)
Q Consensus 51 ~~~~speeI~a~ 62 (80)
..++|.|||.|+
T Consensus 24 ~~E~sfeEllA~ 35 (54)
T 2i3t_B 24 RLEFSLEEVLAI 35 (54)
T ss_dssp -CBCCHHHHHHH
T ss_pred cceeeHHHHHHH
Confidence 458999999985
No 35
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=22.55 E-value=1.1e+02 Score=22.11 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=30.4
Q ss_pred hcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 26 DMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
++...||.|+- ++|.+.+.-...++...++.+++.+.+-..+.++
T Consensus 366 ~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~ 415 (501)
T 1nj1_A 366 EMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDI 415 (501)
T ss_dssp HHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHH
Confidence 45688998753 4676665544455667788898888776655443
No 36
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=22.30 E-value=69 Score=23.46 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=30.5
Q ss_pred hcccCCeEEee-----CCCcceEEEEECCcceEEchHhHHHHHHhHhHHH
Q psy15349 26 DMKHWPFTVVS-----DGGKPKIQVEYKGETKSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 26 ~~~~~pf~i~~-----~~g~~~~~v~~~~~~~~~speeI~a~iL~~lk~~ 70 (80)
+++..||.|+- ++|.+.+.-...++...++.+++.+.+-..++++
T Consensus 366 el~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~i 415 (519)
T 4hvc_A 366 ELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDI 415 (519)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHHH
Confidence 56789999864 3466555544456677789999888776655544
No 37
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=22.27 E-value=43 Score=16.37 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=13.1
Q ss_pred EEchHhHHHHHHhHhHH
Q psy15349 53 SFFPEEVGIMWWSLEPV 69 (80)
Q Consensus 53 ~~speeI~a~iL~~lk~ 69 (80)
.|+|.||++.+.+++--
T Consensus 2 dfnpseia~~v~~yi~~ 18 (46)
T 1hgv_A 2 DFNPSEVASQVTNYIQA 18 (46)
T ss_dssp CSCTHHHHHHHHTTTHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 37899999988877643
No 38
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=22.08 E-value=1.4e+02 Score=17.87 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=29.6
Q ss_pred CeEEeeCCCcceEEEEECCcc----eEEchHhHHHHHHhHhHHH
Q psy15349 31 PFTVVSDGGKPKIQVEYKGET----KSFFPEEVGIMWWSLEPVL 70 (80)
Q Consensus 31 pf~i~~~~g~~~~~v~~~~~~----~~~speeI~a~iL~~lk~~ 70 (80)
-.+|.+.++.|.|+|...+.. .--||.+.-.++|++++..
T Consensus 57 ~c~I~d~~~~P~F~V~~e~~~~~~~~g~Sp~~~W~~il~~i~~~ 100 (146)
T 2wzo_A 57 TCQIKDGGVQPQFEIVPEDDPQNAIVSSSADACHAELLRTISTT 100 (146)
T ss_dssp EEEEEECSSSEEEEEEETTCGGGCEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcceeEEEecCCCCceEEeCChHHHHHHHHHHHHHH
Confidence 355666778899999865432 3348999999999998764
No 39
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=20.83 E-value=51 Score=20.45 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.6
Q ss_pred HhhHHhhCCCCCC
Q psy15349 8 FDAKRLIGRKFDD 20 (80)
Q Consensus 8 ~~~KRliGr~~~d 20 (80)
..+|||+||.-.+
T Consensus 92 l~~khlLGR~p~~ 104 (147)
T 3osj_A 92 LAFRHILGRGPSS 104 (147)
T ss_dssp HHHHHHHSSCCCC
T ss_pred HHhhhhcCCCCCC
Confidence 4689999998765
No 40
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Probab=20.52 E-value=39 Score=22.33 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=23.2
Q ss_pred CcchhHHhhHHhhCCCCCCHHHHhhcccCCe
Q psy15349 2 NPNNTIFDAKRLIGRKFDDATVQADMKHWPF 32 (80)
Q Consensus 2 np~nTi~~~KRliGr~~~d~~vq~~~~~~pf 32 (80)
||..++..+-+++|..+++..++...++..|
T Consensus 201 dp~~~~~~i~~FLG~~~~~~~l~~iv~~~sf 231 (297)
T 1aqu_A 201 DIRREVVKLIEFLERKPSAELVDRIIQHTSF 231 (297)
T ss_dssp CHHHHHHHHHHHTTCCCCHHHHHHHHHHTSH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHhCCH
Confidence 6778888888999999998877664443333
Done!