RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15349
(80 letters)
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 139 bits (354), Expect = 4e-42
Identities = 52/62 (83%), Positives = 58/62 (93%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
MNP NTIFDAKRLIGRKF+DATVQ+DMKHWPF VVS+GGKPK+QVEYKGETK+FFPEE+
Sbjct: 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 61 IM 62
M
Sbjct: 140 SM 141
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 138 bits (349), Expect = 2e-41
Identities = 36/62 (58%), Positives = 44/62 (70%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
NP NTIFD KRLIG K++D +VQ D+KH PF VV+ GKP ++V KGE K F PEE+
Sbjct: 75 ANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 61 IM 62
M
Sbjct: 135 GM 136
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 137 bits (348), Expect = 2e-40
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
MNP NT+FDAKRLIGR+FDDA VQ+DMKHWPF VV+D G+PK+QVEYKGETKSF+PEEV
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61 IM 62
M
Sbjct: 121 SM 122
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 124 bits (313), Expect = 3e-35
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVS-DGGKPKIQVEYKGETKSFFPEEV 59
N NT+ + KR+IG + + + KH+ +V D K +V + GE F ++
Sbjct: 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 60 GIM 62
M
Sbjct: 119 AAM 121
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 68.0 bits (167), Expect = 2e-15
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVV-SDGGKPKIQVEYKGETKSFFPEEV 59
NP NT+F KRLIGR+F D VQ D+ PF ++ +D G ++V + + P ++
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV----KGQKMAPPQI 115
Query: 60 GIM 62
Sbjct: 116 SAE 118
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 65.7 bits (161), Expect = 1e-14
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVV-SDGGKPKIQVEYKGETKSFFPEEV 59
NP NT+F KRLIGR+F D VQ D+ PF ++ +D G ++V + + P ++
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV----KGQKMAPPQI 115
Query: 60 GIM 62
Sbjct: 116 SAE 118
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus
kaustophilus HTA426}
Length = 509
Score = 30.6 bits (70), Expect = 0.027
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 1 MNPNNTIFDAKRLIGRKFDDATVQADMK 28
NPN TI KR +G + V+ + K
Sbjct: 59 TNPN-TIISIKRHMGTDY---KVEIEGK 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 0.97
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 50 ETKSFFPEEVGIMWWSLE------PVLYLALTPF 77
+ + F + + I+ W LE YL P
Sbjct: 204 DAEKVFTQGLNILEW-LENPSNTPDKDYLLSIPI 236
Score = 24.2 bits (52), Expect = 7.1
Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 1/10 (10%)
Query: 71 YLALT-PFHT 79
+L + PFH+
Sbjct: 420 FLPVASPFHS 429
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol
binding protein II, lipid-binding protein, X-RAY,
cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo
sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A*
1kqw_A* 1kqx_A
Length = 141
Score = 26.1 bits (57), Expect = 1.2
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 14 IGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
+G +FD+ T D +H V +G + + E + + G
Sbjct: 70 VGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEG 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 1.3
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 20/73 (27%)
Query: 13 LIGRKFDDATVQADMKHWPFTVVSDGGKPKIQV--------EYKGETKSF--FPEEVGI- 61
+I D D +W V D I+ EY+ FP I
Sbjct: 332 IIAESIRDGLATWD--NWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 62 ------MWWSLEP 68
+W+ +
Sbjct: 389 TILLSLIWFDVIK 401
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A
{Pseudomonas aeruginosa} SCOP: d.212.1.1
Length = 129
Score = 25.7 bits (56), Expect = 1.5
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 1 MNPNNTIFDAKRLIG---RKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPE 57
M P+ TI +A + FD + V A + + Y+ F PE
Sbjct: 60 MLPDGTITNASVSRSSGDKPFDSSAVAAVRNVGRIPEMQQLPRATFDSLYRQRRIIFKPE 119
Query: 58 EVGI 61
++ +
Sbjct: 120 DLSL 123
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme
delivery,cytochrome C maturation, OB- (oligonucleotide
binding)fold; NMR {Shewanella putrefaciens} SCOP:
b.40.9.1 PDB: 1lm0_A
Length = 136
Score = 25.2 bits (55), Expect = 2.0
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 34 VVSDGGKPKIQVEYKGETKSFFPEEVGI 61
V D +I V Y F E GI
Sbjct: 58 AVHDSLGGEILVTYDDLLPDLFREGQGI 85
>1crb_A Cellular retinol binding protein; cellular lipophilic transport
protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2
PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Length = 134
Score = 24.2 bits (52), Expect = 5.4
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 14 IGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
+G++F++ D + TV DG K + + + E + + G
Sbjct: 66 VGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEG 112
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding
protein, CRBP, vitamin A, ILBPS, transport protein;
2.00A {Homo sapiens} SCOP: b.60.1.2
Length = 133
Score = 23.4 bits (50), Expect = 8.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 14 IGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSF 54
+G +FD+ D + V+ D ++ KGE K+
Sbjct: 66 VGEEFDEDNRGLDNRKCKSLVIWDND--RLTCIQKGEKKNR 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.446
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,284,155
Number of extensions: 62039
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 20
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)