RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15349
         (80 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 87.4 bits (216), Expect = 3e-24
 Identities = 49/62 (79%), Positives = 56/62 (90%)

Query: 1   MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
           MNP NT+FDAKRLIGR+FDDA VQ+DMKHWPF VV+D G+PK+QVEYKGETKSF+PEEV 
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

Query: 61  IM 62
            M
Sbjct: 118 SM 119


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score = 66.6 bits (162), Expect = 4e-16
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 1   MNPNNTIFDAKRLIGRKFDDATVQADMKHWPFTVV-SDGGKPKIQVEYKGETKSFFPEEV 59
            NP NT+F  KRLIGR+F D  VQ D+   PF ++ +D G   ++V    + +   P ++
Sbjct: 58  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV----KGQKMAPPQI 113

Query: 60  GIM 62
              
Sbjct: 114 SAE 116


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 6/19 (31%), Positives = 7/19 (36%)

Query: 13  LIGRKFDDATVQADMKHWP 31
            + RKF       D K  P
Sbjct: 107 KLLRKFRKPKTFGDYKVIP 125


>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 134

 Score = 23.6 bits (51), Expect = 2.8
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 14  IGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSFFPEEVG 60
           +G++F++     D +    TV  DG K +   + + E + +     G
Sbjct: 66  VGKEFEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEG 112


>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 150

 Score = 23.5 bits (50), Expect = 3.4
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 50  ETKSFFPEEVGIMWWSLEPVLY 71
           E   +F  E  +      P LY
Sbjct: 128 EIALWFKPEELLTEVKPNPNLY 149


>d1kqwa_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
           {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 134

 Score = 22.9 bits (49), Expect = 4.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 14  IGRKFDDATVQADMKHWPFTVVSDGGKPKIQVEYKGETKSF 54
           IG +FD+ T   D +     V  DG K     + + E + +
Sbjct: 66  IGEEFDEQTKGLDNRTVKTLVKWDGDKLVCVQKGEKENRGW 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,435
Number of extensions: 12438
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 11
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)