BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15351
(352 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328713005|ref|XP_003244970.1| PREDICTED: mitochondrial GTPase 1-like [Acyrthosiphon pisum]
Length = 314
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 206/347 (59%), Gaps = 56/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+G+K +++ LK+VD +IEVHD+R+P +GRN + S+ ++P +LVLNK DL + ++
Sbjct: 24 MGKGMKQMQQKLKSVDCIIEVHDARIPLSGRNPDFKYSISGLKPHILVLNKMDLADLNYK 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+EEK+ EQ IS++I+TNC+N C
Sbjct: 84 QKVEEKIMHEQK-ISKIIYTNCKNSLC--------------------------------- 109
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
P V K ++PT + RY+R+E ++ +MV+GVPNVG
Sbjct: 110 --PGVKK-------------------VMPTALSLIKGSNRYNRSENTDSRIMVIGVPNVG 148
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN++R++ + K A PVG AG+TR+V +Q+K+S PL+Y+LDTPG+ P I N+E
Sbjct: 149 KSSLINSIRNTILGKKSAAPVGAVAGITRAVQNQIKVSHDPLVYVLDTPGVVSPTIKNVE 208
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA CATLQDHLVGE IADY+L++ N+ + YV + N DEP+DDI ++LAKAAI
Sbjct: 209 TGLKLALCATLQDHLVGEEIIADYLLYWFNKNNYFDYVSYLNCDEPTDDIRIVLAKAAIH 268
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+K + + + + PD +AR F+ FR G FG V+LD D L
Sbjct: 269 RKSSIKYLNFDGSYIYR-PDMQGMARNFLNAFRTGVFGKVLLDNDLL 314
>gi|357616532|gb|EHJ70245.1| mitochondrial GTPase 1 [Danaus plexippus]
Length = 335
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 201/347 (57%), Gaps = 56/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK +++ LK+VD VIEVHD+R+PF+GRN + ++ +P +LV NK+DL K
Sbjct: 31 MNKGLKQMQRKLKSVDCVIEVHDARIPFSGRNPIFTSTITGAKPHILVFNKKDLTIPKLL 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++++R+E+ I V+FTNC++ +C+G
Sbjct: 91 PKVKDQLREEEG-IQNVVFTNCKDQSCRG------------------------------- 118
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ +LR P + + N RY+R+E + VM++GVPNVG
Sbjct: 119 ----------LKSLR-------------PLIVDLIKNSNRYNRSEEIDYNVMIIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LRS++M A+PVG AGVTRS+M+++KI+ P I++ DTPGI P + ++E
Sbjct: 156 KSSLINMLRSTYMHVRHALPVGAVAGVTRSLMTKMKINNNPKIFMFDTPGILEPSVKDVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA CA+LQDHLVGE IADY+L++LN N++YVD+ L EPSDDI +L A+K
Sbjct: 216 MGLKLALCASLQDHLVGEEAIADYLLYWLNSHNNFKYVDYMGLLEPSDDIHKVLISGAVK 275
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+ D + R PD EVAR+ I+ FR G G +LD D L
Sbjct: 276 FNRVRTTRDFDGRT-RTVPDVLEVARVMIKAFRTGELGKTLLDVDML 321
>gi|91086203|ref|XP_971754.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial
precursor (GTP-binding protein 7) [Tribolium castaneum]
gi|270010239|gb|EFA06687.1| hypothetical protein TcasGA2_TC009617 [Tribolium castaneum]
Length = 317
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 205/347 (59%), Gaps = 58/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MGRGLK ++ L+++D +IEVHD+R+P +GRN + ++ I+P +LVLNK DLI+ K
Sbjct: 29 MGRGLKQMQHKLRSIDCIIEVHDARIPISGRNTDFKYTISGIKPHILVLNKVDLIDKKLI 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I+ +++ E V+FTN CK D + +T
Sbjct: 89 PSIKNRLKNE---FENVVFTN-----CK-------------DQQCKGVKT---------- 117
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ P Q++ N R++R++ + VM++GVPNVG
Sbjct: 118 --------------------------LFPLAQNLIKNSDRFNRSQAEDQCVMIIGVPNVG 151
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR ++ KG A VG G+TRSV++++K+SE PL Y+LDTPGI P+I++ E
Sbjct: 152 KSSLINALRVRNLHKGNATHVGATPGITRSVLTKIKMSEDPLCYMLDTPGILTPKIESAE 211
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA CAT+QDHLVGE IADY+LF+LN+ G+Y YV FF L++ +DDI+ +LA+ ++K
Sbjct: 212 VGLKLALCATIQDHLVGEGVIADYLLFWLNKNGHYNYVKFFGLEKATDDILEVLAQISVK 271
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
KK + D ++N V PD A++ ++ FRKG G ++LD D L
Sbjct: 272 KKKMLKLRDNTNNYVYK-PDLDYGAKVMLQAFRKGDLGKIVLDEDLL 317
>gi|158297975|ref|XP_318086.4| AGAP004736-PA [Anopheles gambiae str. PEST]
gi|157014585|gb|EAA13293.4| AGAP004736-PA [Anopheles gambiae str. PEST]
Length = 326
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 194/345 (56%), Gaps = 55/345 (15%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+G+K +++ LK +D VIEVHD+R+P TGRN + ++ I+P + VLNK DLI E
Sbjct: 23 MGKGMKQMQQKLKQIDCVIEVHDARIPLTGRNTEFKHTISGIKPHIFVLNKSDLIEKHFE 82
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I E++++E V+FTNC+N +C+G++
Sbjct: 83 GKIIERLQQENQDTMHVLFTNCKNQSCRGLR----------------------------- 113
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K +P+ TL + SD R++R+ +M++GVPNVG
Sbjct: 114 ----------------------KLMPLAQTLINSSD---RFNRSSQREFCIMIIGVPNVG 148
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR+ H+ K A VG AGVTRSV++++KI E P IY+LDTPGI P I + E
Sbjct: 149 KSSLINVLRNRHLNKKGASQVGAVAGVTRSVLNRIKICEDPAIYLLDTPGILEPNIADTE 208
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLA + LQDHLVGE IADY+LF LN+ N+RYV+ L EP+D I L +A+
Sbjct: 209 TGLRLALVSCLQDHLVGEELIADYLLFLLNKQRNFRYVEIMGLPEPTDSIASALVASAVH 268
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
R + SV + PD A++ ++ FR G+FG+++LD D
Sbjct: 269 LNKMIRTKQLDGTSV-LRPDVNMAAKLMLKSFRTGAFGNILLDED 312
>gi|350593188|ref|XP_003483631.1| PREDICTED: mitochondrial GTPase 1 [Sus scrofa]
Length = 408
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 216/381 (56%), Gaps = 47/381 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GL+ ++ LK VD ++EVHD+R+P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPN-----CKGVQKILPT-LQHISDNMTRYHRTEVY 113
I + + +E + VIFTNC ++ N C V+K P+ L + R E +
Sbjct: 94 QKIMQHLERE--GLKNVIFTNCVKDENIKQLLCVAVRKWWPSELPPSGGSPARSWWREGH 151
Query: 114 NTTVMVVGVPNVG----KSSIINALRSSHMKK------GKAVP------ILPTLQHISDN 157
PN G ++ LR + G+ P I+P + + +
Sbjct: 152 PRRSCS---PNRGCAWSRAVWFWMLRRPPWTRRGAGLTGQRPPAVDWLQIIPKVTELVGS 208
Query: 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI 217
RYHR E +MV+GVPNVGKSS+INALR H++KGKA VG + G+TR+VMS+V++
Sbjct: 209 SCRYHRGESVEYCIMVIGVPNVGKSSLINALRRQHLRKGKATKVGGEPGITRAVMSRVQV 268
Query: 218 SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRY 277
E+PL+++LDTPG+ PRI N+E G++LA C T+ DHLVGE +ADY+L+ LNR Y
Sbjct: 269 CERPLMFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLLGY 328
Query: 278 VDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV----------ARI 327
V + L + DDI +L + A++ + + V++ TG+V AR
Sbjct: 329 VQHYGLGQACDDITSVLKQVAVRLR--------KTQKVKVLTGTGDVNVVQPNYPAAARD 380
Query: 328 FIEHFRKGSFGSVMLDRDFLE 348
F+ FR G+ G VMLDRD L+
Sbjct: 381 FLRAFRSGALGPVMLDRDILQ 401
>gi|157138211|ref|XP_001664178.1| hypothetical protein AaeL_AAEL003813 [Aedes aegypti]
gi|122068838|sp|Q17EJ1.1|MTG1_AEDAE RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|108880663|gb|EAT44888.1| AAEL003813-PA [Aedes aegypti]
Length = 316
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 196/347 (56%), Gaps = 59/347 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+G+K +++ LK VD VIEVHD+R+P +GRN + ++ ++P +LVLNK+D I+ + +
Sbjct: 24 MGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKDKIDRRLQ 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +++++E S ++FTNC++ +C
Sbjct: 84 GRVVDRLQQEDSEARHILFTNCKDQSC--------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N +R ++P Q + + R++R + +M++GVPNVG
Sbjct: 111 -----------NGIRK----------VMPLAQDLILSSNRFNRADQKEYCIMIIGVPNVG 149
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR+ H+ K A VG AG+TRSV++++KISE PL+Y+LDTPGI P I + E
Sbjct: 150 KSSLINVLRNRHLNKKGASQVGAVAGITRSVLNKIKISEDPLVYLLDTPGILKPNIADTE 209
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
G+RLA + LQDHLVGE IADY+L+ LN+ GN++YV+ L EP+D I V++
Sbjct: 210 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRGNFKYVELMGLKEPTDSIAEVLIAGSKH 269
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
+ K R +D S + PD AR I+ FR G+FG +++D D
Sbjct: 270 LDKTVRVRHYD---GSFVIRPDAMLAARHMIKAFRTGAFGKILIDDD 313
>gi|395501203|ref|XP_003754987.1| PREDICTED: mitochondrial GTPase 1 [Sarcophilus harrisii]
Length = 336
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 195/350 (55%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ I+P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GIKPHLLVLNKMDLADLKEK 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I ++ KE + VIFT
Sbjct: 94 QKILGRLNKE--GVKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N L+ ++K+ I+PT+ + ++ RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCLKDENIKQ-----IVPTVTELIESGYRYHRGENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+KKGKA VG G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLKKGKASRVGGDPGITRAVMSKIQVCERPLMFLLDTPGVLAPRIPDVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE IADY+LF LN+ +RYV+ ++L E DDI +L + AIK
Sbjct: 216 TGLKLATCGTILDHLVGEDIIADYLLFSLNKQQQFRYVEHYDLGEACDDIGSVLKRIAIK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
KK K + V + P+ A FI FR G G VM D LE
Sbjct: 276 LKKIHKVKVLTGTGDVNVIQPNYSAAAYDFIRSFRNGLLGQVMFDTAILE 325
>gi|350593186|ref|XP_001927683.3| PREDICTED: mitochondrial GTPase 1 isoform 1 [Sus scrofa]
Length = 332
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 195/350 (55%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GL+ ++ LK VD ++EVHD+R+P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +E + VIFT
Sbjct: 94 QKIMQHLERE--GLKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENIKQ-----IIPKVTELVGSSCRYHRGESVEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR H++KGKA VG + G+TR+VMS+V++ E+PL+++LDTPG+ PRI N+E
Sbjct: 156 KSSLINALRRQHLRKGKATKVGGEPGITRAVMSRVQVCERPLMFLLDTPGVLAPRIQNVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR YV + L + DDI +L + A++
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLLGYVQHYGLGQACDDITSVLKQVAVR 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + V + P+ AR F+ FR G+ G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGDVNVVQPNYPAAARDFLRAFRSGALGPVMLDRDILQ 325
>gi|170064624|ref|XP_001867602.1| mitochondrial GTPase 1 [Culex quinquefasciatus]
gi|167881951|gb|EDS45334.1| mitochondrial GTPase 1 [Culex quinquefasciatus]
Length = 315
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 59/350 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+G+K +++ LK VD VIEVHD+R+P +GRN + ++ ++P VLVLNK+D I + +
Sbjct: 23 MGKGIKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHVLVLNKKDTIERRSQ 82
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++R E S V+FT NC
Sbjct: 83 RAILDRLRGEDSEARHVLFT-----NC--------------------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K + +R ++P Q + R++R++ +M++GVPNVG
Sbjct: 105 ------KDQSCDGIRK----------VMPLAQDLILGSNRFNRSDQKEYCIMIIGVPNVG 148
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR+ H+ + A VG AG+TRSV+ ++KI E PL+Y+LDTPGI P I + E
Sbjct: 149 KSSLINVLRNRHLNRKGASQVGAVAGITRSVLHKIKICEDPLVYLLDTPGILKPNIADTE 208
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA-- 298
G+RLA + LQDHLVGE IADY+L+ LN+ N+RYV+ L EP+D I +L A
Sbjct: 209 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRNNFRYVEMMGLQEPTDSIAEVLVSGAQH 268
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ + R FD S+ + PD AR I+ FR G+FG +++D D +E
Sbjct: 269 LNRTLKVRNFD---GSIVVRPDVTLAARHMIKSFRTGAFGKILIDSDKIE 315
>gi|348507344|ref|XP_003441216.1| PREDICTED: mitochondrial GTPase 1-like [Oreochromis niloticus]
Length = 319
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 201/345 (58%), Gaps = 59/345 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK + +LK+VD +IE+HD+R+PF+GRN + Q ++ + +P +L+LNK DL + ++
Sbjct: 32 MAKGLKQMRANLKSVDCIIEIHDARIPFSGRNPVFQDTL-SAKPHLLILNKMDLADLSNK 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +K+ KE ++ V+FT+C L+ DN+ +
Sbjct: 91 QRILKKLEKEG--MTHVLFTDC--------------LKQRDDNIKK-------------- 120
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++P + I + R++R E N +MV+GVPNVG
Sbjct: 121 --------------------------LVPMVMDIIASKPRFNREENTNYCLMVIGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR +++KKG+A VG + G+T++V++++++ E+P++Y+LDTPG+ P+I+++E
Sbjct: 155 KSSLINSLRRTNLKKGRASRVGGEPGITKAVLTKIQVCERPIMYLLDTPGVLPPKIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA C T+ DHLVGE IADY+L+ LNR G + YV+ ++L EPSDDI +L + A+K
Sbjct: 215 TGMKLALCGTILDHLVGEDIIADYLLYSLNRLGKFSYVEKYDLQEPSDDIQHVLKRIAVK 274
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K +A N P+ A FI FRKG G VMLD
Sbjct: 275 LGKTQRVKAITGVGNVTITIPNYTAAAYDFIRAFRKGELGQVMLD 319
>gi|410976331|ref|XP_003994576.1| PREDICTED: mitochondrial GTPase 1 [Felis catus]
Length = 332
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 195/350 (55%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P VLVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHVLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + V+FT
Sbjct: 94 QKIIQHLEGE--GLKNVVFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N L+ ++K+ I+PT+ + + RYHR E MV+G+PNVG
Sbjct: 112 -----------NCLQDENVKQ-----IIPTVTGLVGSSCRYHRGESLEYCAMVIGIPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINALRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR + YV + L DDI +L + A++
Sbjct: 216 MGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLFGYVRHYGLGGACDDIASVLKQVAVR 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
K K + V + P+ AR F++ FR+G G VMLDRD L+
Sbjct: 276 LGKTQKVKVLTGTGDVNVIQPNYPAAARDFLQTFRRGLLGPVMLDRDVLQ 325
>gi|321479043|gb|EFX89999.1| hypothetical protein DAPPUDRAFT_186925 [Daphnia pulex]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 192/348 (55%), Gaps = 56/348 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+K +E LK VD V+EVHD+R+P +GRN L S +P +LVLNK DLI S+++
Sbjct: 61 MNRGMKQMEAKLKLVDCVLEVHDARIPISGRNPNLTHSFVAAKPYILVLNKCDLIPSEYQ 120
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S I + KE+ +I +IFTN + C P L+ ++
Sbjct: 121 STIMSAL-KERENIQHIIFTNSKLDTC-------PGLKEVTKRAA--------------- 157
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
Q I++ RY+R++ + +MV GVPNVG
Sbjct: 158 -------------------------------QLITET-ERYNRSDAVDYNLMVFGVPNVG 185
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR HM+K + + V P+AG+T++V ++++ P +Y+ DTPGI PRI ++
Sbjct: 186 KSSLINALRGVHMRKKRVLQVAPEAGLTKNVHERIRVCNSPAVYLFDTPGIMNPRIATMD 245
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GMRLA+CA+ +DHLVGE ++ DY+LF+LN+ + YVD L+ P+D++ LL ++
Sbjct: 246 VGMRLASCASFKDHLVGEESVVDYLLFWLNKNEEFGYVDSLGLEAPTDNVTELLFYMCVQ 305
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ +R + + +PD A+ F+ FR +FG ++LD+D L+
Sbjct: 306 RN-LRRKIRHVDGTYKEYPDFKSAAQRFLSEFRSTNFGKILLDKDLLD 352
>gi|67944515|gb|AAY83879.1| GTPase-like protein [Bos taurus]
gi|67944523|gb|AAY83883.1| GTPase-like protein [Bos taurus]
gi|296472672|tpg|DAA14787.1| TPA: mitochondrial GTPase 1 precursor [Bos taurus]
Length = 332
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 196/350 (56%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ L+ VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLRLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +E I V+FT
Sbjct: 94 QKIIQHLEREG--IKHVVFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ++PT+ + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----VIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +AD++L+ LNR YV + L E DDI +L + A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADFLLYTLNRHQLSGYVQHYGLGEACDDIASVLKRVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + +V + PD AR F+ FR G G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDLLQ 325
>gi|188528646|ref|NP_955005.2| mitochondrial GTPase 1 [Mus musculus]
gi|134034175|sp|Q8R2R6.2|MTG1_MOUSE RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
gi|74190443|dbj|BAE25897.1| unnamed protein product [Mus musculus]
Length = 326
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK+VD VIEVHD+R+PF+GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E+ +S V+FT
Sbjct: 93 QKIVQRL--EEKGLSNVLFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MVVGVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L D I +L AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIK 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+K K + +V + PD AR F+ FR G G VMLDRD +
Sbjct: 275 LRKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDII 323
>gi|75832123|ref|NP_001020498.2| mitochondrial GTPase 1 [Bos taurus]
gi|134034173|sp|Q4PS77.2|MTG1_BOVIN RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|74268183|gb|AAI03283.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Bos taurus]
Length = 332
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ L+ VD +IEVHD+++P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +E I V+FT
Sbjct: 94 QKIIQHLEREG--IKHVVFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ++PT+ + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----VIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +AD++L+ LNR YV + L E DDI +L + A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADFLLYTLNRHQLSGYVQHYGLGEACDDIASVLKRVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + +V + PD AR F+ FR G G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDLLQ 325
>gi|327281444|ref|XP_003225458.1| PREDICTED: mitochondrial GTPase 1-like [Anolis carolinensis]
Length = 319
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 192/346 (55%), Gaps = 61/346 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLKD++ L+ VD ++EVHD+R+PF+GRN LLQ+++ IRP +LVLNK DL + H+
Sbjct: 31 MAKGLKDMKSRLRAVDCILEVHDARIPFSGRNPLLQEAL-GIRPHLLVLNKMDLADLTHK 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + R EQ V+FT+C + V KI+P + + N RY R+E + +MV+
Sbjct: 90 PQVLK--RLEQQGFRHVVFTDCLKD--ENVMKIVPVVTELISNNQRYQRSENVESCIMVI 145
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GVPNVGKSS+IN++R H+KKGKA +V G P
Sbjct: 146 GVPNVGKSSVINSVRRRHLKKGKA--------------------------SLVGGAP--- 176
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
GVTR+V++++++ E+PLI++LDTPG+ P+I+ +E
Sbjct: 177 -------------------------GVTRAVLTKIQVCERPLIFLLDTPGVLSPQIECIE 211
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA-- 298
G++LA C ++DHLVGE IADY+L+ LN + YV+ + L P D++ M+L A
Sbjct: 212 TGLKLALCGAIKDHLVGEEIIADYLLYALNCQKQFSYVEHYGLPNPCDNVEMVLKSIALH 271
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ K + + N V P+ A FI FRKG G VMLD+
Sbjct: 272 LGKTQRVKVLTGTGNVVMTSPNYKAAACEFIHSFRKGLLGKVMLDQ 317
>gi|402881899|ref|XP_003904496.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Papio anubis]
Length = 334
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E + VIFT
Sbjct: 94 QKIMQRLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N L+ ++K+ I+P + + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCLKDENVKQ-----IIPMVTELMGSSPRYHRGENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKAARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+LF LNR + YV + L+ D I +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLFTLNRHQRFGYVQHYGLESACDSIERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + F + + + PD AR F+ FR+G G +MLD D L
Sbjct: 276 LGKTQKVKVFTGTGDVNVIQPDYPAAARDFLHTFRRGLLGPMMLDLDIL 324
>gi|20073169|gb|AAH27306.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Mus musculus]
Length = 327
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK+VD VIEVHD+R+PF+GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E+ +S V+FT
Sbjct: 93 QKIVQRL--EEKGLSNVLFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MVVGVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L D I +L AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIK 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+K K + +V + PD AR F+ FR G G +MLDRD +
Sbjct: 275 LRKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQMMLDRDII 323
>gi|426253267|ref|XP_004020320.1| PREDICTED: mitochondrial GTPase 1 [Ovis aries]
Length = 334
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 194/350 (55%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ L+ VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQGSLRLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +E + V+FT
Sbjct: 94 QKILQHLEREG--LKHVVFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ++PT+ + + RYHR E VMV GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----VIPTVMELVGSSYRYHRGEHAEHCVMVTGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR YV + L E DDI +L + A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADYLLYTLNRHQLLGYVQHYGLGEACDDIASVLKRVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + +V + PD AR F+ FR G G VMLD D L+
Sbjct: 276 LRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDCDLLQ 325
>gi|74194747|dbj|BAE25976.1| unnamed protein product [Mus musculus]
Length = 326
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK+VD VIEVHD+R+PF+GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E+ +S V+FT
Sbjct: 93 QKIVQRL--EEKGLSNVLFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MVVGVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L D I +L AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIK 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+K K + +V + PD AR F+ FR G G V+LDRD +
Sbjct: 275 LRKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVLLDRDII 323
>gi|432903771|ref|XP_004077219.1| PREDICTED: mitochondrial GTPase 1-like [Oryzias latipes]
Length = 319
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 198/345 (57%), Gaps = 59/345 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK+VD ++E+HD+R+P +GRN L Q ++ ++RP +LVLNK DL + ++
Sbjct: 32 MAKGLKQMKASLKSVDCIVEIHDARIPLSGRNPLFQNTL-DVRPHILVLNKMDLADLSNK 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
QKIL L+
Sbjct: 91 ------------------------------QKILKKLERD-------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV NV + + +S K ++PT+ I +N R++R E + +MV+GVPNVG
Sbjct: 101 GVKNVLFTDCLKQADNSIKK------LVPTVLEILENKPRFNRDENIDYCMMVIGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR +++KKG+A VG + G+T++V++++++SE+P +Y+LDTPG+ P+I+++E
Sbjct: 155 KSSLINALRRTNLKKGRASRVGGEPGITKAVLTKIQVSERPKMYLLDTPGVLPPKIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA C T+ DHLVGE IADY+L+ LN+ N+ YV+ + L EPSDDI ++L + A+K
Sbjct: 215 TGMKLALCGTILDHLVGEDIIADYLLYSLNKLRNFSYVEKYELQEPSDDIQLVLKRIAVK 274
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K +A N P+ A FI FRKG G VMLD
Sbjct: 275 LGKTQRVKALTGVGNITVTIPNYTAAAYDFIRAFRKGDLGQVMLD 319
>gi|440909563|gb|ELR59459.1| Mitochondrial GTPase 1 [Bos grunniens mutus]
Length = 336
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 196/354 (55%), Gaps = 65/354 (18%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRM----PFTGRNHLLQQSVQNIRPMVLVLNKRDLIN 56
M +GLK ++ LK VD +IEVHD+R+ P +GRN L Q+++ ++P +LVLNK DL +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARISFNIPLSGRNPLFQETL-GLKPHLLVLNKMDLAD 93
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
K + I + +E I V+FT
Sbjct: 94 LKEQQKIIRHLEREG--IKHVVFT------------------------------------ 115
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
N ++ ++K+ ++PT+ + + RYHR E +MV+GV
Sbjct: 116 ---------------NCVKDENVKQ-----VIPTVTELVGSSYRYHRGEHVEYCIMVIGV 155
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI
Sbjct: 156 PNVGKSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRI 215
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
++E G++LA C T+ DHLVGE +AD++L+ LNR YV + L E DDI +L +
Sbjct: 216 PSVETGLKLALCGTVLDHLVGEETLADFLLYTLNRHQLLGYVQHYGLGEACDDIASVLKR 275
Query: 297 AAIK-KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
A+K +K K + +V + PD AR F+ FR G G VMLDRDFL+
Sbjct: 276 VAVKLRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDFLQ 329
>gi|312377201|gb|EFR24092.1| hypothetical protein AND_11567 [Anopheles darlingi]
Length = 292
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 184/341 (53%), Gaps = 55/341 (16%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIE 64
+K +++ LK +D VIEVHD+R+P TGRN + +V I+P +LVLNK+DLI + I
Sbjct: 1 MKQMQQKLKQIDCVIEVHDARIPLTGRNKDFRTTVSGIKPHILVLNKQDLIERRTADAIL 60
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+++R++ +IFTN CK + N + R
Sbjct: 61 QRLRQQDGETENIIFTN-----CK------------NQNCSGVRR--------------- 88
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
++P Q + RY+R + +M++GVPNVGKSS+
Sbjct: 89 ----------------------VVPLAQELICGSDRYNRATEKDFCIMIIGVPNVGKSSL 126
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
INALR+ H+ + A VG AGVTRSV+++++IS+ P +Y+LDTPGI P I + E G+R
Sbjct: 127 INALRNRHLHRKGASQVGALAGVTRSVLNRIRISQDPSVYLLDTPGILQPNIGDTETGLR 186
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWF 304
LA + LQDHLVGE IADY+L+ LN+ N+RYV+ L EP+D I L A+
Sbjct: 187 LALVSCLQDHLVGEELIADYLLYLLNKQQNFRYVELLGLTEPTDSIAEALVGGAVHHGKT 246
Query: 305 KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
R + +V + PD A++ ++ FR G+ G +MLD D
Sbjct: 247 IRMKQLDG-TVAIRPDVVAAAKLMLKAFRTGALGRIMLDED 286
>gi|338716360|ref|XP_003363446.1| PREDICTED: mitochondrial GTPase 1-like [Equus caballus]
Length = 345
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 191/347 (55%), Gaps = 61/347 (17%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + K I
Sbjct: 41 GLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKERQKI 99
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ E + VIFT
Sbjct: 100 IRHL--EGEGLKNVIFT------------------------------------------- 114
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
N ++ ++K+ I+P + + + RYHR E +MV+GVPNVGKSS
Sbjct: 115 --------NCVKDENVKQ-----IVPMVTELIGSSYRYHRGESLEYCIMVIGVPNVGKSS 161
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM 243
+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI+++E G+
Sbjct: 162 LINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIESVETGL 221
Query: 244 RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KK 302
+LA C T+ DHLVGE +ADY+L+ LNR + YV + L E DDIV +L + A+K K
Sbjct: 222 KLALCGTVLDHLVGEETLADYLLYTLNRHELFGYVQHYGLGEACDDIVSVLKRVAVKLGK 281
Query: 303 WFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
K + V + P+ AR F+ FR G G VMLDRD L+
Sbjct: 282 TQKVKVLTGTGDVNVIQPNYPAAARDFLRTFRSGLLGPVMLDRDTLQ 328
>gi|300116300|ref|NP_001177846.1| mitochondrial GTPase 1 [Macaca mulatta]
gi|380817946|gb|AFE80847.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|383422837|gb|AFH34632.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|384950308|gb|AFI38759.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
Length = 334
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 191/349 (54%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E + VIFT
Sbjct: 94 QKIMQRLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N L+ ++K+ I+P + + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCLKDENVKQ-----IIPMVTELMGSSPRYHRGENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKAARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+LF LNR + YV + L D I +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLFTLNRHQRFGYVQHYGLGSACDSIERVLKSVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K K + V + PD AR F+ FR+G G VMLD D L
Sbjct: 276 LGKTQKVKVLTGTGDVNVVQPDYPAAARDFLHTFRRGLLGPVMLDLDIL 324
>gi|318037339|ref|NP_001187294.1| mitochondrial GTPase 1 [Ictalurus punctatus]
gi|338818318|sp|E3TDS3.1|MTG1_ICTPU RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|308322643|gb|ADO28459.1| mitochondrial GTPase 1 [Ictalurus punctatus]
Length = 320
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 203/346 (58%), Gaps = 61/346 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK + + VD VIE+HD+R+PF+GRN L Q+++ ++RP +L+LNK DL ++ +
Sbjct: 33 MAKGLKQMRASPRKVDCVIEIHDARIPFSGRNPLFQENL-DVRPHLLILNKMDLADTSDK 91
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ ++ GV+ +L ++D + +
Sbjct: 92 MSILKQLERD------------------GVKNVL-----LTDCLKQ-------------- 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R + +KK I+P + + +N R+HR E + +MV+GVPNVG
Sbjct: 115 --------------RDTSVKK-----IIPLVTDLIENAPRFHREENRSYCLMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INA+R +++KKGKA VG + G+T++V++++++ E+P+I++LDTPG+ P+I+N+E
Sbjct: 156 KSSLINAIRRTNLKKGKASRVGGEPGITKAVLTKIQVCERPVIHLLDTPGVLPPKIENIE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI- 299
GM+LA C T+ DHLVGE IADY+LF LNR + YV+ ++L+ PSDDI +L A+
Sbjct: 216 TGMKLALCGTILDHLVGEDIIADYLLFSLNRPQRFGYVERYDLETPSDDIQHVLKCIAVK 275
Query: 300 --KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + K V +VRM P+ A FI FRKG G VMLD
Sbjct: 276 LGKTQRVKAITGVGDITVRM-PNYTAAAYDFIRAFRKGELGKVMLD 320
>gi|395842569|ref|XP_003794089.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Otolemur garnettii]
Length = 300
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 193/350 (55%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD V+EVHD+R+P +GRN L Q+++ I+P +LVLNK DL + +
Sbjct: 1 MAKGLKKMQNSLKRVDCVVEVHDARIPLSGRNPLFQETL-GIKPHLLVLNKMDLADLTEK 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 60 QKIMQHL--EGQGLKNVIFT---------------------------------------- 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ++P + + N RY R E + +MV+GVPNVG
Sbjct: 78 -----------NCVKDENIKQ-----VIPMVTELIGNSCRYQRGENLDYCIMVIGVPNVG 121
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 122 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLSPRIESVE 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR + YV + L DDI +L A+K
Sbjct: 182 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHQLFAYVQHYGLGGACDDIEHVLKSVAVK 241
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + V + P+ AR F++ FR+G G VMLD D L+
Sbjct: 242 LRKTQKVKVLTGTGDVNIIQPNYPAAARDFLQTFRRGQLGPVMLDLDVLQ 291
>gi|426366662|ref|XP_004050367.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Gorilla gorilla
gorilla]
Length = 334
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 94 QKIMQHLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + ++ RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----IIPMVTELTGRSHRYHRRENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D+I +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNIERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324
>gi|332835419|ref|XP_003312882.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan troglodytes]
gi|397490621|ref|XP_003816297.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan paniscus]
gi|410226204|gb|JAA10321.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410255200|gb|JAA15567.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410288914|gb|JAA23057.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410351341|gb|JAA42274.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
Length = 334
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 94 QKIMQHLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ILP + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----ILPMVTELIGRSHRYHRRENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D+I +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNIERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324
>gi|392338002|ref|XP_003753415.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
gi|392344722|ref|XP_003749050.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
Length = 326
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 188/349 (53%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD VIEVHD+R+PF+GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKLVDCVIEVHDARIPFSGRNPLFQE-LLGLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E+ + VIFT
Sbjct: 93 QKIVQHL--EEKGLRNVIFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MVVGVPNVG
Sbjct: 111 -----------NCIKDENIKQ-----IIPKVTELIGCSYRYHRAENPEYCIMVVGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLMFLLDTPGVLAPRIQSVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L SD I +L AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASASDHIEWVLKNVAIK 274
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + PD AR F+ FR G G VMLDRD +
Sbjct: 275 LGKTRKVKVLTGTGNVNVIQPDYAIAARDFLRTFRSGRLGQVMLDRDII 323
>gi|355562898|gb|EHH19492.1| hypothetical protein EGK_20212, partial [Macaca mulatta]
gi|355783223|gb|EHH65144.1| hypothetical protein EGM_18499, partial [Macaca fascicularis]
Length = 297
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 189/346 (54%), Gaps = 61/346 (17%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + I
Sbjct: 1 GLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKI 59
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+++ E + VIFT
Sbjct: 60 MQRLEGEG--LKNVIFT------------------------------------------- 74
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
N L+ ++K+ I+P + + + RYHR E +MV+GVPNVGKSS
Sbjct: 75 --------NCLKDENVKQ-----IIPMVTELMGSSPRYHRGENLEYCIMVIGVPNVGKSS 121
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM 243
+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G+
Sbjct: 122 LINSLRRQHLRKGKAARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAPRIESVETGL 181
Query: 244 RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KK 302
+LA C T+ DHLVGE +ADY+LF LNR + YV + L D I +L A+K K
Sbjct: 182 KLALCGTVLDHLVGEETMADYLLFTLNRHQRFGYVQHYGLGSACDSIERVLKSVAVKLGK 241
Query: 303 WFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + V + PD AR F+ FR+G G VMLD D L
Sbjct: 242 TQKVKVLTGTGDVNVVQPDYPAAARDFLHTFRRGLLGPVMLDLDIL 287
>gi|301786663|ref|XP_002928747.1| PREDICTED: mitochondrial GTPase 1-like [Ailuropoda melanoleuca]
Length = 451
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 192/345 (55%), Gaps = 61/345 (17%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIE 64
L+ ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P VLVLNK DL + K +
Sbjct: 158 LRKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHVLVLNKMDLADLKEQ---- 212
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
QKI+ QH+ G+ N
Sbjct: 213 --------------------------QKII---QHLEGK-----------------GLKN 226
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
V N +R ++K+ ++P ++ + ++ RYHR E MV+G+PNVGKSS+
Sbjct: 227 V---VFTNCVRDENIKQ-----VIPMVRGLVESSYRYHRGESLEYCAMVIGIPNVGKSSL 278
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
INALR H+++GKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E G++
Sbjct: 279 INALRRQHLRRGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIASVEMGLK 338
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKW 303
LA C T+ DHLVGE +ADY+L+ LNR + YV + LD DDI +L + A++ K
Sbjct: 339 LALCGTVLDHLVGEETLADYLLYTLNRHQLFGYVQHYGLDGACDDIASVLKQVAVRLGKT 398
Query: 304 FKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + V + P+ AR F+ FR G G VMLDRD L
Sbjct: 399 QKVKVLTGTGDVNVLQPNYAAAARDFLRTFRSGLLGPVMLDRDVL 443
>gi|23273479|gb|AAH35721.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|158258467|dbj|BAF85204.1| unnamed protein product [Homo sapiens]
Length = 300
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 1 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 60 QKIMQHLEGEG--LKNVIFT---------------------------------------- 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 78 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 121
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 122 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D++ +L A+K
Sbjct: 182 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 241
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 242 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 290
>gi|13325182|gb|AAH04409.1| MTG1 protein, partial [Homo sapiens]
Length = 355
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 56 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 114
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 115 QKIMQHLEGEG--LKNVIFT---------------------------------------- 132
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 133 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 176
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 177 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 236
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D++ +L A+K
Sbjct: 237 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 296
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 297 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 345
>gi|45708796|gb|AAH26039.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|190689305|gb|ACE86427.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
gi|190690655|gb|ACE87102.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
Length = 334
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 94 QKIMQHLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D++ +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324
>gi|93277113|ref|NP_612393.2| mitochondrial GTPase 1 [Homo sapiens]
gi|134034174|sp|Q9BT17.2|MTG1_HUMAN RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
Length = 334
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 94 QKIMQHLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D++ +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324
>gi|403259229|ref|XP_003922123.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 334
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 191/349 (54%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL +
Sbjct: 35 MAKGLKKMQNSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLAD---- 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E+ QKI+ L+
Sbjct: 90 -LTEQ-------------------------QKIMQRLE---------------------- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ N + ++ +K I+PT+ + ++ RYHR E +MV+GVPNVG
Sbjct: 102 ------GEGLKNVVFTNCVKDESVQQIIPTVTELIESSHRYHRGENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+ KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLGKGKATRVGGQPGITRAVMSRIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR + YV + L D+I +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHQRFEYVQHYGLGSACDNIERMLKHVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K K + V + PD AR F+ FR+G G VMLD D L
Sbjct: 276 LGKTKKVKMLTGTGDVNVIQPDYSAAARDFLHTFRRGLLGPVMLDLDVL 324
>gi|229367336|gb|ACQ58648.1| Mitochondrial GTPase 1, mitochondrial precursor [Anoplopoma
fimbria]
Length = 319
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 203/345 (58%), Gaps = 59/345 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK + +LKNVD +IE+HD+R+PF+G+N + Q+++ ++RP +L+LNK DL + ++
Sbjct: 32 MAKGLKQMRANLKNVDCIIEIHDARIPFSGKNPVFQETL-DVRPHLLILNKMDLADLSNK 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +K++K + + V+FT+ +L+ DN+ +
Sbjct: 91 QRILKKLQK--NGVRNVLFTD--------------SLKQRDDNIKK-------------- 120
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++P + I ++ R++R E N +MV+G+PNVG
Sbjct: 121 --------------------------LVPKVVEIIESKPRFNRDEDINYCLMVIGMPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR +++KKG+A VG + G+T++V++++++ E+P++++LDTPG+ P+I+++E
Sbjct: 155 KSSLINSLRRTNLKKGRASRVGGEPGITKAVLTKIQVCERPIMHLLDTPGVLPPKIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA C T+ DHLVGE IADY+L LNR G YV+ ++L EPSDDI +L + A++
Sbjct: 215 TGMKLALCGTILDHLVGEDIIADYLLNSLNRLGKSSYVEKYDLQEPSDDIQHVLKRIAVR 274
Query: 301 KKWFKRAFDVS--SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+R ++ N P+ A FI FRKG G VMLD
Sbjct: 275 LGKTQRVKAITGVGNITITVPNYTAAAYDFIRTFRKGELGQVMLD 319
>gi|322795649|gb|EFZ18328.1| hypothetical protein SINV_02998 [Solenopsis invicta]
Length = 322
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 188/350 (53%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GL+ +++ LKN+D ++EVHD+R+P +G +++ ++P + VL+K+DL +++H
Sbjct: 29 MTKGLRQMQQRLKNIDCILEVHDARIPISGHYADFSRTLTGLKPHIFVLSKKDLADTRHT 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + +E +S +IFTN ++ C+G
Sbjct: 89 KTIVSTLNREG--LSNIIFTNLKDEQCRG------------------------------- 115
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
MK+ ILP + + RY+RTE + ++MV+GVPNVG
Sbjct: 116 ------------------MKQ-----ILPLAKKLILKSQRYNRTEEESYSMMVIGVPNVG 152
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LRS+H+ GKA VG AG+TRSV++ +KISE P +Y++DTPGI P I ++
Sbjct: 153 KSSLINRLRSNHLHLGKATHVGATAGITRSVLTHIKISEDPAVYLIDTPGILAPSIKDIH 212
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA LQDH+VG +ADY+LF+LN+ + YV+ L EP+D++ +L A K
Sbjct: 213 AGFKLALVGCLQDHIVGSYLLADYLLFWLNKNNRFEYVEKLGLPEPNDNVSQVLTFIAAK 272
Query: 301 KKWFKRAFDVSSNSVRMF--PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ V S + R+ PD F+ FRKG GS LD D LE
Sbjct: 273 ---LGKTVKVKSYTGRLEIKPDFKFAGDYFVNLFRKGDLGSYCLDIDLLE 319
>gi|346471107|gb|AEO35398.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 184/340 (54%), Gaps = 58/340 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M G+KD+++ LK+VD ++E+HD+R P +GRN + I+P VL+LNK DL + + +
Sbjct: 1 MYTGMKDMQRKLKSVDCILELHDARAPLSGRNPNFLSMLAAIKPHVLLLNKADLADPEGK 60
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ +++R E + +F +P + V KI+P + + N RY+R E Y+ +MV+
Sbjct: 61 DVVLQRLRTEGTQ--HTLFIRSTDPP-RNVDKIVPLVADLIRNSERYNRLEEYDYNIMVI 117
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKSS+IN LR H+ KG
Sbjct: 118 GIPNVGKSSLINTLRKMHLGKG-------------------------------------- 139
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
G+A VG KAGVT SV+ ++KIS+ P IY+LDTPGI P D+ +
Sbjct: 140 ---------------GQATRVGAKAGVTMSVLERIKISQVPSIYLLDTPGILSPATDDPQ 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++LA C + DHLVG + +ADY+LF+LN+ NY YVD+ LDEP DDI ++L K AI
Sbjct: 185 VALQLALCGCMLDHLVGPVLMADYLLFWLNQRHNYSYVDYLGLDEPCDDIRLVLYKTAIN 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSV 340
K +R ++R ++ A FI+ FR+G G +
Sbjct: 245 LKAVQRVRTYEGWTIRANQESA--AMNFIQGFRRGLLGKI 282
>gi|332252806|ref|XP_003275545.1| PREDICTED: mitochondrial GTPase 1 [Nomascus leucogenys]
Length = 456
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 161 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 219
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E + V+FT
Sbjct: 220 QKIMQRLEGEG--LKNVVFT---------------------------------------- 237
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 238 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRRENLEYCIMVIGVPNVG 281
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++ +SE+PL+++LDTPG+ PRI+++E
Sbjct: 282 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIHVSERPLMFLLDTPGVLAPRIESVE 341
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ ++ YV + L D I +L A+K
Sbjct: 342 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQHFGYVQHYGLGSACDSIEHVLKSVAVK 401
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G G VMLD D L
Sbjct: 402 LGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFRRGLLGPVMLDLDVL 450
>gi|344296110|ref|XP_003419752.1| PREDICTED: mitochondrial GTPase 1-like [Loxodonta africana]
Length = 478
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 189/349 (54%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL +
Sbjct: 181 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLAD---- 235
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+EQ I LQH+ +
Sbjct: 236 -------LREQKKI----------------------LQHLEGEGMK-------------- 252
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N + +S +K I+PT+ + N RYHR E VMV+G+PNVG
Sbjct: 253 -----------NVIFTSCVKDENVKQIIPTVTELIGNSYRYHRGENLEYCVMVIGIPNVG 301
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN++R H++KGKA VG + GVTR+VMS++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 302 KSSLINSIRRLHLRKGKATRVGGQPGVTRTVMSRIQVCERPLVFLLDTPGVLAPRIESVE 361
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE IADY+L+ LNR + YV ++L D + +L + A+K
Sbjct: 362 MGLKLALCGTVLDHLVGEETIADYLLYTLNRQQLFGYVPHYSLGGACDSVESVLKRVAVK 421
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ A F+ FR G G VMLD+D L
Sbjct: 422 LGKTQKVKVLTGTGNVNVVQPNYSAAASDFLRAFRSGLLGPVMLDQDVL 470
>gi|383792146|ref|NP_001244302.1| mitochondrial GTPase 1 homolog [Gallus gallus]
Length = 329
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 189/345 (54%), Gaps = 61/345 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GL+ + L+ D ++EVHD+R+P +GRN +LQ+ V IRP +LVLNK DL + + +
Sbjct: 44 MAKGLRQMRASLRRADCLVEVHDARIPLSGRNPVLQE-VLGIRPHLLVLNKMDLADPRQQ 102
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E++R Q S V+FT+C+
Sbjct: 103 SRVLEQLR--QQGCSYVVFTDCQ------------------------------------- 123
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R S++KK I+P + + ++ RYHR E ++MV+GVPNVG
Sbjct: 124 --------------RDSNVKK-----IVPLVAKLVNSSPRYHRAESTEYSIMVIGVPNVG 164
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+KKGKA VG + GVT++V++++++ E PL+Y++DTPG+ P++ ++E
Sbjct: 165 KSSLINSLRRLHLKKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGVLPPKLADVE 224
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
GM+LA C ++DHLVGE +ADY+L+ LN+ + Y++ + L E SD+I V+ A
Sbjct: 225 TGMKLALCGAIRDHLVGEDIMADYLLYVLNQQQQFGYMELYGLPEASDNIRHVLKYVAVA 284
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ K + + N D A F+ FR G G + LD
Sbjct: 285 LGKTQKVKVLTGTGNVNMTMLDYSAAAYEFLRAFRAGRLGRLTLD 329
>gi|354505914|ref|XP_003515012.1| PREDICTED: mitochondrial GTPase 1-like [Cricetulus griseus]
Length = 327
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 185/349 (53%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD VIEVHD+R+P +GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKLVDCVIEVHDARIPLSGRNSLFQE-LLGLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 93 QKIVQHL--EGKGLKNVIFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P L + RY+R E VMV+GVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IIPKLMELIKYSYRYNRAENMEYCVMVIGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL ++LDTPG+ PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKATRVGGEPGITRAVTSRIQVCERPLTFLLDTPGVLAPRIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L D I +L A+K
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYGLASACDHIEWVLKNVAVK 274
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + PD AR F+ FR G G VMLDRD +
Sbjct: 275 LGKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDLI 323
>gi|432115360|gb|ELK36777.1| Mitochondrial GTPase 1 [Myotis davidii]
Length = 301
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 62/344 (18%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFT-GRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEK 66
++ LK VD ++EVHD+R+ F GRN L Q+++ I+P + VLNK DL + K + I
Sbjct: 1 MQSSLKLVDCIVEVHDARISFAAGRNPLFQETL-GIKPHLFVLNKMDLADLKEKQKIIRH 59
Query: 67 VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
+ +E + VIFT
Sbjct: 60 LERE--GLKNVIFT---------------------------------------------- 71
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
N ++ ++K+ ++P + + N RYHR E +MV+GVPNVGKSS+IN
Sbjct: 72 -----NCIKDENIKQ-----VIPKVTELIGNSYRYHRGENVEFCIMVIGVPNVGKSSLIN 121
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA
Sbjct: 122 SLRRQHLRKGKATRVGSEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLA 181
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWF 304
C T+ DHLVGE +ADY+L+ LNR + YV + L E DD+ +L + AIK K
Sbjct: 182 LCGTVLDHLVGEETLADYLLYTLNRHQLFGYVQHYGLGEACDDVASVLKRVAIKLGKTQK 241
Query: 305 KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ + N + P+ AR F+ FR G G VMLDRD L+
Sbjct: 242 VKVLTGTGNVNVIQPNYSAAARDFLRAFRSGLLGPVMLDRDVLQ 285
>gi|348587758|ref|XP_003479634.1| PREDICTED: mitochondrial GTPase 1-like [Cavia porcellus]
Length = 333
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 189/350 (54%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD R+ F GRN L Q+++ +RP +LVLNK DL + +
Sbjct: 34 MAKGLKKMKSSLKLVDCIIEVHDCRISFHGRNPLFQETL-GVRPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + IFT
Sbjct: 93 QKIIQHLEGEG--LKNTIFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + I + RYHR E +MV+G+PNVG
Sbjct: 111 -----------NCVKDENIKQ-----IIPKITEIVGSSYRYHRAENVEYCIMVIGIPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+K GKA VG + G+TR+V S++++SE+PL+++LDTPG+ PRI ++E
Sbjct: 155 KSSLINSLRRQHLKIGKAARVGGEPGITRAVTSRIQVSERPLMFLLDTPGVLAPRIGSVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ ++YV + L + SDDI +L A++
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNQHQMFKYVQHYGLHDASDDIEFVLKSIAVR 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
K K + V + P+ AR F+ FR G G VMLDRD L+
Sbjct: 275 LGKTQKVKVLTGTGDVNVVQPNYSAAARDFLRTFRSGLLGPVMLDRDILQ 324
>gi|334313746|ref|XP_001378257.2| PREDICTED: mitochondrial GTPase 1-like [Monodelphis domestica]
Length = 335
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 190/350 (54%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IE+ +R+P +GRN L Q+++ I+P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEMQVARIPLSGRNPLFQETL-GIKPHLLVLNKMDLADLKEK 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I C N KGV+ ++ T
Sbjct: 94 QKI----------------VGCLNK--KGVKNVIFT------------------------ 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + ++ RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCIKDENIKQ-----IVPMVTKLIESGYRYHRGENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+KKGKA PVG GVT++VMS+V++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLKKGKASPVGGHPGVTKAVMSRVQVCERPLMFLLDTPGVLTPRIQDVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
G++LA C T+ DHLVGE IADY+LF LN+ +RYV+ ++L E DDI V+
Sbjct: 216 TGLKLATCGTILDHLVGEDIIADYLLFTLNKQQQFRYVEHYDLGEACDDIGSVLKKIAIK 275
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+KK + + + + PD A FI FR G G VM D LE
Sbjct: 276 LKKINKVKVLTGTGDVNVIQPDYTAAAYDFIRSFRSGVLGQVMFDTAILE 325
>gi|346472117|gb|AEO35903.1| hypothetical protein [Amblyomma maculatum]
Length = 312
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 183/338 (54%), Gaps = 58/338 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M G+KD+++ LK+VD ++E+HD+R+P +GRN + I+P VL+LNK DL + + +
Sbjct: 32 MYTGMKDMQRKLKSVDCILELHDARVPLSGRNPNFLSMLAAIKPHVLLLNKADLADPEGK 91
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ +++R E + +F +P + V KI+P + + N RY+R E Y+ +MV+
Sbjct: 92 DVVLQRLRTEGTQ--HTLFIRSTDPP-RNVDKIVPLVADLIRNSERYNRLEEYDYNIMVI 148
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKSS+IN LR H+ KG
Sbjct: 149 GIPNVGKSSLINTLRKMHLGKG-------------------------------------- 170
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
G+A VG KAGVT SV+ ++KIS+ P IY+LDTPGI P D+ +
Sbjct: 171 ---------------GQATRVGAKAGVTMSVLERIKISQVPSIYLLDTPGILSPATDDPQ 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++LA C + DHLVG + +ADY+LF+LN+ NY YVD+ LDEP DDI ++L K AI
Sbjct: 216 VALQLALCGCMLDHLVGPVLMADYLLFWLNQRHNYSYVDYLGLDEPCDDIRLVLYKTAIN 275
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
K +R ++R ++ A FI+ FR+ +
Sbjct: 276 LKAVQRVRTYEGWTIRANQESA--AMNFIQGFRRACWA 311
>gi|351698046|gb|EHB00965.1| Mitochondrial GTPase 1 [Heterocephalus glaber]
Length = 333
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 191/350 (54%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHDSR+ F GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKLVDCIIEVHDSRISFHGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + E + +IFT
Sbjct: 93 QKIIHHLEGEG--LKNIIFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + + RYHR E +MVVG+PNVG
Sbjct: 111 -----------NCIKDENIKQ-----IIPKITELVGSSYRYHRAENMEYCIMVVGIPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H+K GKA VG + G+TR+V S++++SE+PL+++LDTPG+ P+I ++E
Sbjct: 155 KSSLINSLRRQHLKTGKAARVGGEPGITRAVTSRIQVSERPLMFLLDTPGVLAPQIGSVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR ++YV + L+ SDDI +L A++
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHRMFKYVQHYGLNGASDDIECVLKTIAVR 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + V + P+ AR F+ FR G G +M+DRD L+
Sbjct: 275 LRKTRKVKVLTGTGDVNVVQPNYSAAARDFLRTFRSGLLGPMMIDRDILQ 324
>gi|410901296|ref|XP_003964132.1| PREDICTED: mitochondrial GTPase 1-like [Takifugu rubripes]
Length = 319
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 198/345 (57%), Gaps = 59/345 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G+K ++ LK+VD +IE+HD+R+P +GRN + Q+++ ++RP +LVLNK DL + +
Sbjct: 32 MAKGIKQMKASLKSVDCIIEIHDARIPLSGRNPVFQETL-DVRPHLLVLNKMDLADVSDK 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ EK+ K KGV+ +L T
Sbjct: 91 KDLLEKLAK------------------KGVKNVLFT------------------------ 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ L+ + + ++PT+ + ++ R+ R E N +MV+GVPNVG
Sbjct: 109 -----------DCLKQ---RDDSVIKVVPTVVELIESSPRFSRCENTNYCLMVIGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN+LR + +KKG+A VG + G+T++V++++++ +P++++LDTPG+ P+I+++E
Sbjct: 155 KSSFINSLRRTFLKKGRASRVGGEPGITKAVLTKIQVCGRPIMHLLDTPGVLPPKIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA C T+ DHLVGE IADY+L+ LNR + YV+ ++L++PSDDI +L + A+K
Sbjct: 215 TGMKLALCGTILDHLVGEDIIADYLLYSLNRLEKFSYVEKYDLEQPSDDIHYVLKRIAVK 274
Query: 301 KKWFKRAFDVS--SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ +R ++ N P+ A FI FRKG G VMLD
Sbjct: 275 LRKTQRVKAITGFGNITVTVPNYTAAAYDFIRAFRKGELGQVMLD 319
>gi|307176883|gb|EFN66224.1| Mitochondrial GTPase 1 [Camponotus floridanus]
Length = 328
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 187/348 (53%), Gaps = 57/348 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK +++ LK+VD ++EVHD+R+P +GR +++ ++P + VL+K+DL + K+
Sbjct: 29 MTKGLKQMQQRLKHVDCILEVHDARIPISGRYADFSRTLTGLKPHIFVLSKKDLADRKYS 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + +E +S +IFTN ++ CK
Sbjct: 89 KSIVSTLNREG--LSNIIFTNLKDEQCK-------------------------------- 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+MKK ILP + + N +RY+R + + +MV+GVPNVG
Sbjct: 115 -----------------NMKK-----ILPLAKKLISNSSRYNRAQEESYCMMVIGVPNVG 152
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LRS+H+ +A VG + G+TRSV++++KISE P +++ DTPGI P I ++
Sbjct: 153 KSSLINRLRSNHLNMARATHVGAEPGITRSVLTRIKISEDPTVFLFDTPGILAPSIKDIH 212
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA LQDH+VG +ADY+LF+LN+ G + YV+ L EP+D++ +L A K
Sbjct: 213 TGFKLALVGCLQDHVVGSYMLADYLLFWLNKNGRFEYVEELGLPEPNDNVSYVLTYIAAK 272
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
K V++ PD A F+ FRKG GS LD D +E
Sbjct: 273 LK-KIIKIKTIDKQVQVVPDLQFAADYFVSLFRKGKLGSYCLDMDLIE 319
>gi|72025788|ref|XP_793548.1| PREDICTED: mitochondrial GTPase 1-like [Strongylocentrotus
purpuratus]
Length = 301
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 172/300 (57%), Gaps = 56/300 (18%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R +K ++ +K VD V+EVHD+R+PF GRN +++ I+P +L+LNK+DL ++
Sbjct: 26 MARSMKKMQGSMKKVDCVVEVHDARLPFAGRNPAFRETF-GIKPHLLILNKKDLADTASS 84
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I +++ +E+ I V+FTNC VQ+ P+
Sbjct: 85 NDIRKRL-QEEGGIEHVMFTNC-------VQQNSPS------------------------ 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A I+PT+ I + R++RTE ++MVVG+PNVG
Sbjct: 113 -----------------------AKKIVPTVIDIIEGGERFNRTENQEYSIMVVGIPNVG 149
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INALR H+K+GK VG GVTRS+M ++ +SE+P +++ DTPGI+ P I N+E
Sbjct: 150 KSSLINALRRIHVKRGKGTKVGRLPGVTRSLMQKILVSEQPRMWLFDTPGITTPFIQNVE 209
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA TLQDH+VG IADY+LF LNR +RYVD +N+ EP DDI +LA A K
Sbjct: 210 VGMKLAMMGTLQDHMVGTELIADYVLFTLNRLQKFRYVDVYNMSEPCDDIDGVLAGIARK 269
>gi|194744004|ref|XP_001954488.1| GF18288 [Drosophila ananassae]
gi|190627525|gb|EDV43049.1| GF18288 [Drosophila ananassae]
Length = 322
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 186/345 (53%), Gaps = 57/345 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G+K I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ K
Sbjct: 27 MTKGMKQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGPK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK R H
Sbjct: 87 KQKSVLQQLRQQQPELKNILFTN-----CKD---------------QRNH---------- 116
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + + +R++RT+ VM++GVPN
Sbjct: 117 --GV----------------------LDILPLATRLVNESSRFNRTQTTENNVMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AG+TR+V ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSIINVLRNVHLKKKSAARVGAEAGITRAVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E GM+LA L DH+VGE IADY+L++LN Y YV+ +L PSD+I +LA+ A
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNTHRKYAYVEKLHLSAPSDNISAVLAEYA 272
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+++ F + V + + AR FI FR G GS+ LD
Sbjct: 273 QREELFHKVKQYDG-RVEIMTNLLAAARKFIHFFRTGQLGSINLD 316
>gi|198450767|ref|XP_001358117.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
gi|338818379|sp|Q29AU5.2|MTG1_DROPS RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|198131183|gb|EAL27254.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 185/346 (53%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HDSR+P GRN ++ ++P +LVLNK DL+ K
Sbjct: 27 MNKGMRQIQQKLRNVDCIVEIHDSRIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGPK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK R H
Sbjct: 87 QQRSVLQQLRRQQPELKNILFTN-----CKD---------------QRNH---------- 116
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + + +RY+R + +M++GVPN
Sbjct: 117 --GV----------------------LDILPLATQLVGDSSRYNRAQSAEHNIMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AGVTR+V ++KI EKP +Y++DTPGI P + +
Sbjct: 153 VGKSSIINVLRNVHLKKRSAARVGAEAGVTRAVGERIKIQEKPAVYMIDTPGILQPSVTD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN+ Y YV+ +L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNKHRRYEYVEKLSLSSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A F R V + + AR FI+ FR G GS+ LD
Sbjct: 273 AQTHGMFHRVKQYDG-QVEVMTNLLAAARKFIQFFRTGQLGSINLD 317
>gi|291404947|ref|XP_002718812.1| PREDICTED: GTP_binding protein [Oryctolagus cuniculus]
Length = 335
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 185/349 (53%), Gaps = 60/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ L VD VIEV D+R+P +GRN + Q+++ ++P +LVLNK DL +
Sbjct: 35 MAKGLKKMQSSLTRVDCVIEVRDARIPLSGRNPVFQEAL-GLKPHLLVLNKMDLADLTER 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ +E + VIFT NC ++D R
Sbjct: 94 QKIVQQL-EEGEGLRNVIFT-----NC------------MTDENVRQ------------- 122
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++P + + + RYHR E + VMV G+PNVG
Sbjct: 123 --------------------------VIPAVSQLIGSSHRYHRGENVDYCVMVAGIPNVG 156
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+V S++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 157 KSSLINSLRRQHLRKGKATRVGGEPGITRAVTSRIQVSERPLVFLLDTPGVLAPRIESVE 216
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C TL DHLVGE +ADY+L LN YV + L D LL A++
Sbjct: 217 TGLKLALCGTLLDHLVGEETMADYLLHTLNEHRLLGYVQHYGLGGTCQDTGHLLKSVAVR 276
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K +A + + + P+ AR F++ FR G G VMLDRD L
Sbjct: 277 LGKTRKVKALTGTGDVNVVQPNYAAAARDFLQAFRSGQLGPVMLDRDLL 325
>gi|195036438|ref|XP_001989677.1| GH18661 [Drosophila grimshawi]
gi|193893873|gb|EDV92739.1| GH18661 [Drosophila grimshawi]
Length = 325
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 185/349 (53%), Gaps = 58/349 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HDSR+PF GRN +++ ++P +LVLNK DL+ K
Sbjct: 28 MTKGMRQIQQKLRNVDCIVEIHDSRIPFAGRNSQFFETITGNGVKPHILVLNKVDLLGKK 87
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R +Q + ++FTN CK R H
Sbjct: 88 QQRSVLKQLRAQQPELRNILFTN-----CKD---------------QRNH---------- 117
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + +R++RT+ +M++GVPN
Sbjct: 118 --GV----------------------LDILPLASKLVAESSRFNRTQSAEHNIMIIGVPN 153
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AGVTRSV ++KI E+P +Y++DTPGI P + +
Sbjct: 154 VGKSSIINVLRNVHLKKRSAARVGAEAGVTRSVGERIKIQEQPPVYMIDTPGILQPSVTD 213
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LNR YV L PSD+I +LA+
Sbjct: 214 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNRHRRLDYVQLLGLSSGPSDNISAVLAEF 273
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
A ++ F R V M + AR FI FR G G + LD ++
Sbjct: 274 AQREGMFHRVKQYDG-QVEMMTNLLAAARRFISFFRTGQLGPINLDAEY 321
>gi|195391248|ref|XP_002054275.1| GJ24357 [Drosophila virilis]
gi|194152361|gb|EDW67795.1| GJ24357 [Drosophila virilis]
Length = 324
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 186/348 (53%), Gaps = 58/348 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L++VD ++E+HD+R+P GRN +++ ++P +LVLNK DLI +K
Sbjct: 27 MTKGMRQIQQKLRSVDCIVEIHDARIPLAGRNSQFFETITGNGVKPHILVLNKVDLIGTK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ I +++R Q + ++FTNC++ NT V+
Sbjct: 87 QQRGILKQLRTVQPELRNILFTNCKDQR---------------------------NTGVL 119
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
ILP + +R++R + +M++GVPN
Sbjct: 120 ---------------------------DILPLATKLVAESSRFNRAQSAEHNIMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AG+TR+V ++KI E+PL+Y++DTPGI P + +
Sbjct: 153 VGKSSIINVLRNVHLKKRSAARVGAEAGITRAVGERIKIQEQPLVYMIDTPGILQPSVTD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA + DH+VGE IADY+L++LN+ Y YVD L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCVPDHIVGEDLIADYLLYWLNKHRRYEYVDKLGLTSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
A ++ F R + V + + AR FI FR G G + LD +
Sbjct: 273 AQQQAMFHRVKQYNG-QVEVMTNLLAAARKFISFFRTGQLGPINLDEE 319
>gi|195109126|ref|XP_001999141.1| GI24346 [Drosophila mojavensis]
gi|193915735|gb|EDW14602.1| GI24346 [Drosophila mojavensis]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 183/348 (52%), Gaps = 58/348 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ +P +LVLNK DL+ K
Sbjct: 27 MTKGMRQIQQRLRNVDCIVEIHDARIPIAGRNSQFFDTITGNGAKPHILVLNKIDLLGGK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ I +++R Q + ++FTNC++ NT V+
Sbjct: 87 QQRGILKQLRARQPELKHILFTNCKDQR---------------------------NTGVL 119
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
ILP + +R++R + + +M++GVPN
Sbjct: 120 ---------------------------DILPLATKLVGESSRFNRAQSADHNIMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AG+TRSV ++KI E+P +Y++DTPGI P I +
Sbjct: 153 VGKSSIINVLRNVHLKKRSAARVGAEAGITRSVGERIKIQEQPPVYMIDTPGILQPSITD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN+ Y YV L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNKHERYEYVKLLGLHSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
A ++ F R + V + + AR FI FR G G++ LD +
Sbjct: 273 AQQQAMFHRVKQYNG-QVEVMTNLLAAARKFISFFRTGQLGAINLDEE 319
>gi|383852977|ref|XP_003702001.1| PREDICTED: mitochondrial GTPase 1-like [Megachile rotundata]
Length = 321
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 190/350 (54%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G++ +E+ LKNVD +IEVHD+R+P +G ++++ I+P + +L+K DL + +
Sbjct: 31 MQKGIRQMERQLKNVDCIIEVHDARVPISGHYADFKKTLTGIKPHIFLLSKMDLADMTLK 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + Q ++S V+F+N ++ NCK
Sbjct: 91 KSIIQNL--SQENLSNVVFSNLKDMNCK-------------------------------- 116
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV N +LP Q + R++R + + +M++GVPNVG
Sbjct: 117 GVKN----------------------LLPLAQKLIKESNRFNRAQETSYQIMIIGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR+ +++K A VG AG+TRSV ++++ISE P IY+LDTPGI P++++++
Sbjct: 155 KSSLINRLRNVNLRKTNAAHVGGVAGITRSVSTRIQISEDPKIYVLDTPGILTPKLNDVD 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL--AKAA 298
G++LA +QDHLVG +ADY+LF+LN+ G + YV+ L EP+DDI+ +L A
Sbjct: 215 TGLKLALVGCMQDHLVGPEVLADYLLFWLNKNGKFEYVEKLGLTEPNDDILYVLTYTAAK 274
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
IKK + +D + M PD A + FRKG G LD D L+
Sbjct: 275 IKKTIRIKNYD---GRIIMKPDIRFAAEHIVSRFRKGELGYYCLDEDILK 321
>gi|307212582|gb|EFN88297.1| Mitochondrial GTPase 1 [Harpegnathos saltator]
Length = 314
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 192/349 (55%), Gaps = 62/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH- 59
M +GL+ +++ L+++D ++EVHD+R+P +G +++ +++P + +LNK+DL ++ +
Sbjct: 26 MTKGLRQMQQRLRSIDCILEVHDARVPISGHYADFSRTLTSLKPHIFILNKKDLADTSYS 85
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
ES++ RK +S ++FTN
Sbjct: 86 ESIVSTLNRKG---LSNILFTN-------------------------------------- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
L++ H K+ K I+P + + N RY+R+ + T+MV+GVPNV
Sbjct: 105 --------------LKNQHCKETKK--IVPLAKKLILNSNRYNRSGELSYTMMVIGVPNV 148
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKSS+IN LRS+++ GKA VG +AG+TRSV++ +KISE+P +Y++DTPGI +P I ++
Sbjct: 149 GKSSLINRLRSNNLSLGKATSVGAEAGITRSVLTHIKISEEPTVYLIDTPGILIPTIKDI 208
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G++LA LQDH+VG +ADY+L++LN+ Y Y L EP+D++ +L A
Sbjct: 209 HSGLKLALVGCLQDHVVGSYTLADYLLYWLNKESRYEYTQELGLSEPNDNVQYVLTFIAA 268
Query: 300 KKKWFKRAFDVSSN-SVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K FK+ + + + P+ A FI FRKG G LD+++L
Sbjct: 269 K---FKKTIQIKGPFGLEVKPNLQFAADYFISLFRKGELGFYCLDKNYL 314
>gi|195572996|ref|XP_002104481.1| GD18426 [Drosophila simulans]
gi|194200408|gb|EDX13984.1| GD18426 [Drosophila simulans]
Length = 323
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 181/346 (52%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK
Sbjct: 87 QQKGVLQQLRRQQPELQHILFTN-----CKD----------------------------- 112
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ + ILP + +R++RT+ +M++GVPN
Sbjct: 113 --------------------QRNNGVLDILPLATRLVSESSRFNRTQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN Y YV+ L PSDDI +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNTHRKYDYVEMLKLSSGPSDDISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHINLD 317
>gi|85815858|ref|NP_651094.2| CG17141 [Drosophila melanogaster]
gi|122064937|sp|Q9VCU5.2|MTG1_DROME RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|66771681|gb|AAY55152.1| IP12332p [Drosophila melanogaster]
gi|84796186|gb|AAF56060.2| CG17141 [Drosophila melanogaster]
Length = 323
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 181/346 (52%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK
Sbjct: 87 QQKSVLQQLRRQQPELQHILFTN-----CKD----------------------------- 112
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ + ILP + +R++RT+ +M++GVPN
Sbjct: 113 --------------------QRNNGVLDILPLATRLVSESSRFNRTQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN Y YV+ L PSDDI +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNSHRKYDYVEMLKLSSGPSDDISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHMNLD 317
>gi|326923267|ref|XP_003207860.1| PREDICTED: mitochondrial GTPase 1-like [Meleagris gallopavo]
Length = 343
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 183/334 (54%), Gaps = 61/334 (18%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
L+ D ++EVHD+R+P +GRN +LQ+ V IRP +LVLNK DL + + +S + E++R Q
Sbjct: 69 LRRADCLVEVHDARIPLSGRNPVLQE-VLGIRPHLLVLNKMDLADPRQQSRVLEQLR--Q 125
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
S V+FT+C+
Sbjct: 126 QGCSHVVFTDCQ------------------------------------------------ 137
Query: 132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
+ S++KK I+P + + + RYHR E ++MV+GVPNVGKSS+IN+LR
Sbjct: 138 ---QDSNVKK-----IVPLVAKLVSSSPRYHRAESTEYSIMVIGVPNVGKSSLINSLRRL 189
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
H+KKGKA VG + GVT++V++++++ E PL+Y++DTPG+ P++ ++E GM+LA C +
Sbjct: 190 HLKKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGVLPPKLADVETGMKLALCGAI 249
Query: 252 QDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFD 309
+DHLVGE +ADY+L+ LN+ + YV+ + L E SD+I +L A+ K +
Sbjct: 250 RDHLVGEDIMADYLLYVLNQQQQFGYVERYGLPEASDNIRHVLKYVAVTLGKTQKVKVLT 309
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ N M + A F+ FR G G + LD
Sbjct: 310 GTGNVNMMMLNYSAAAYEFLRAFRAGHLGRLTLD 343
>gi|350402770|ref|XP_003486596.1| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Bombus impatiens]
Length = 322
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 183/347 (52%), Gaps = 57/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+GLK+++K LKNVD +IEVHD+R+P +G ++ ++P + VLNK DL + K +
Sbjct: 30 MGKGLKNMQKQLKNVDCIIEVHDARIPVSGHYADYSNTLTGLKPHIFVLNKMDLADMKFK 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I E N N KG+ IL T
Sbjct: 90 NSIVE------------------NLNQKGLSNILFT------------------------ 107
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ R+ + K +LP Q + R++R + +M++GVPNVG
Sbjct: 108 ------------SFRNVKCEGAKE--LLPLAQKLIKESNRHNRAHESSFQIMIIGVPNVG 153
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR++ ++K AVPVG AG+TRSV ++VK+SEKP IY+LDTPGI P++DN+
Sbjct: 154 KSSLINRLRNNILRKSSAVPVGGIAGITRSVSTRVKVSEKPDIYVLDTPGILTPKVDNMH 213
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA +QDHL+G +AD++LF+LN+ + YV+ L EP D+I +L A K
Sbjct: 214 TGLKLALVGCMQDHLIGPEILADFLLFWLNKQKRFEYVEKLELREPHDNISYILTYIAAK 273
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K R + + + PD A F+ FRKG G LD D L
Sbjct: 274 LKKTLRIKNYDGKII-IKPDLRFAAEHFLSLFRKGELGYYCLDEDLL 319
>gi|195331143|ref|XP_002032262.1| GM23617 [Drosophila sechellia]
gi|194121205|gb|EDW43248.1| GM23617 [Drosophila sechellia]
Length = 323
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 180/346 (52%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + + +R++Q + ++FTN CK
Sbjct: 87 QQKGVLQHLRRQQPELQHILFTN-----CKD----------------------------- 112
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ + ILP + +R++RT+ +M++GVPN
Sbjct: 113 --------------------QRNNGVLDILPLATRLVGESSRFNRTQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN Y YV+ L PSDDI +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNTHRKYDYVEMLKLSSGPSDDISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHINLD 317
>gi|195443902|ref|XP_002069628.1| GK11624 [Drosophila willistoni]
gi|194165713|gb|EDW80614.1| GK11624 [Drosophila willistoni]
Length = 323
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD V+E+HDSR+P GRN ++ ++P +LVLNK DL+++K
Sbjct: 28 MTKGMRQIQQRLRNVDCVVEIHDSRIPIAGRNSQFFDTITGSGVKPHILVLNKMDLLDNK 87
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ I +++R +Q + ++FTN CK R H
Sbjct: 88 QQRSIRQQLRSQQPELRHILFTN-----CKD---------------QRNH---------- 117
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + +R++R + +M++GVPN
Sbjct: 118 --GV----------------------LDILPLATRLISESSRFNRAQSAEHNIMIIGVPN 153
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+K+ A VG +AG+TR+V ++KI E+P +Y++DTPGI P I +
Sbjct: 154 VGKSSVINVLRNVHLKRKSAARVGAEAGITRAVGERIKIQEQPAVYMIDTPGILQPSISD 213
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LNR + YV +L P D+I +LA+
Sbjct: 214 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNRHQRFDYVKKLHLQSGPCDNISSVLAEY 273
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A ++ F R + V + + AR FI FR G G + LD
Sbjct: 274 AQQEGMFHRVKQYNG-QVEVMTNLLAAARKFIHFFRTGQLGPINLD 318
>gi|194910747|ref|XP_001982222.1| GG12486 [Drosophila erecta]
gi|190656860|gb|EDV54092.1| GG12486 [Drosophila erecta]
Length = 323
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK R H
Sbjct: 87 QQRSVLQQLRRQQPELQHILFTN-----CKD---------------QRNH---------- 116
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + +R++RT+ +M++GVPN
Sbjct: 117 --GV----------------------LDILPLATRLVGESSRFNRTQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKRSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN Y YV+ L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNSHRKYEYVEKLKLSSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHINLD 317
>gi|195502711|ref|XP_002098346.1| GE24007 [Drosophila yakuba]
gi|194184447|gb|EDW98058.1| GE24007 [Drosophila yakuba]
Length = 323
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
++ + +++R++Q + ++FTN CK R H
Sbjct: 87 QQNGVLQQLRRQQPELRHILFTN-----CKD---------------QRNH---------- 116
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + +R++R + +M++GVPN
Sbjct: 117 --GV----------------------LDILPLATRLVGESSRFNRAQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+LF+LN Y YV+ L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLFWLNSHRKYDYVEKLKLSSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHINLD 317
>gi|281352478|gb|EFB28062.1| hypothetical protein PANDA_018782 [Ailuropoda melanoleuca]
Length = 272
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 174/324 (53%), Gaps = 61/324 (18%)
Query: 26 MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP 85
+P +GRN L Q+++ ++P VLVLNK DL + K + I + + E + V+FT
Sbjct: 1 IPLSGRNPLFQETL-GLKPHVLVLNKMDLADLKEQQKIIQHL--EGKGLKNVVFT----- 52
Query: 86 NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
N +R ++K+
Sbjct: 53 ----------------------------------------------NCVRDENIKQ---- 62
Query: 146 PILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA 205
++P ++ + ++ RYHR E MV+G+PNVGKSS+INALR H+++GKA VG +
Sbjct: 63 -VIPMVRGLVESSYRYHRGESLEYCAMVIGIPNVGKSSLINALRRQHLRRGKATRVGGEP 121
Query: 206 GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYI 265
G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E G++LA C T+ DHLVGE +ADY+
Sbjct: 122 GITRAVMSRIQVCERPLMFLLDTPGVLAPRIASVEMGLKLALCGTVLDHLVGEETLADYL 181
Query: 266 LFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGE 323
L+ LNR + YV + LD DDI +L + A++ K K + V + P+
Sbjct: 182 LYTLNRHQLFGYVQHYGLDGACDDIASVLKQVAVRLGKTQKVKVLTGTGDVNVLQPNYAA 241
Query: 324 VARIFIEHFRKGSFGSVMLDRDFL 347
AR F+ FR G G VMLDRD L
Sbjct: 242 AARDFLRTFRSGLLGPVMLDRDVL 265
>gi|380017946|ref|XP_003692903.1| PREDICTED: mitochondrial GTPase 1-like [Apis florea]
Length = 324
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 185/351 (52%), Gaps = 61/351 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+GLK + LKNVD +IEVHD+R+P +G + ++P + +LNK DL + + +
Sbjct: 29 MGKGLKQMRHQLKNVDCIIEVHDARIPISGHYADFNNVLTGLKPHIFILNKIDLSDMRFK 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I E + K+ + ++FTN +N C+GV++++P Q + N RY+R+E + +M++
Sbjct: 89 DSIIECLNKKG--LFNILFTNFKNVKCEGVRELIPLAQKLIKNSNRYNRSEESSFQMMII 146
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKSS+IN LRS+ + K A V V G+ +
Sbjct: 147 GIPNVGKSSLINRLRSNILHKSNA--------------------------VQVGGIAGIT 180
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+S V ++VKISE P IY+LDTPGI +P+I+++
Sbjct: 181 RS----------------------------VSTRVKISENPNIYVLDTPGILIPKINDIN 212
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
G++LA + +QDHLVG +AD++LF+LN+ + YV L +PSD+I V++ A
Sbjct: 213 TGLKLALASCMQDHLVGPELLADFLLFWLNKHERFEYVQKLGLTKPSDNISDVLIYIAAK 272
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLEL 349
+KK + +D + PD A F+ FRKG G LD D L L
Sbjct: 273 LKKTLKIKNYD---GKKIIKPDLRFAAEYFLSLFRKGELGYYCLDEDLLPL 320
>gi|427798891|gb|JAA64897.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 302
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 179/332 (53%), Gaps = 64/332 (19%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M G+KD+++ LK+VD V+E+HD+R+P +GRN + I+P VL+LNK DL + +
Sbjct: 32 MYTGMKDMQRKLKSVDCVLELHDARVPLSGRNPHFLSMMAAIKPHVLLLNKTDLADPNLK 91
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +++R + G Q IL HI
Sbjct: 92 ATVVQQLRDQ------------------GTQNIL----HI-------------------- 109
Query: 121 GVPNVGKSSIINALRSSHMKKG--KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
RS+ + K VP++ L S+ RY+R EV++ +MV+G+PN
Sbjct: 110 --------------RSTEPSRNIDKIVPMVADLIRQSE---RYNRHEVFDYNIMVIGIPN 152
Query: 179 VGKSSIINALRSSHM-KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKSS+INALR H+ KKG A VG AGVT V+ ++KISE PL+Y+LDTPGI P +
Sbjct: 153 VGKSSLINALRKMHLGKKGPATRVGATAGVTMRVLERIKISEDPLMYLLDTPGILSPATN 212
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + ++LA C + DHLVG + +ADY+L++LN+ NY YVD+ LD P DDI ++L K
Sbjct: 213 DPQTALQLALCGCMLDHLVGNVLMADYLLYWLNQQHNYSYVDYLGLDGPCDDIRLVLYKT 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFI 329
A+ + + S+R P+ A FI
Sbjct: 273 AVNMRAVSKVRTYEGWSLR--PNQEAAAVNFI 302
>gi|221139730|ref|NP_001137528.1| mitochondrial GTPase 1 isoform 2 [Danio rerio]
gi|213627500|gb|AAI71457.1| Unknown (protein for MGC:198184) [Danio rerio]
Length = 238
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + ++ +R+HR E +MV+GVPNVGKSS+INALR +++KKGKA VG + G
Sbjct: 40 IVPLVSKLIESTSRFHREEERCYCLMVIGVPNVGKSSLINALRRTYLKKGKASKVGAEPG 99
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+T++V++++++ E+P+I++LDTPG+ PRI+N+E GM+LA C T+ DHLVGE IAD++L
Sbjct: 100 ITKAVLTKIQVCERPIIHLLDTPGVLPPRIENIETGMKLALCGTVLDHLVGEDVIADFLL 159
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVS--SNSVRMFPDTGEV 324
F LNR + YV+ ++L+EP DDI +L A+K +R ++ N PD
Sbjct: 160 FSLNRLERFSYVEKYSLEEPCDDIQHVLKCIAVKLGKTRRVKAITGVGNITVQLPDYSAA 219
Query: 325 ARIFIEHFRKGSFGSVMLD 343
A FI FRKG G VMLD
Sbjct: 220 AYDFIRAFRKGELGKVMLD 238
>gi|50344936|ref|NP_001002140.1| mitochondrial GTPase 1 isoform 1 [Danio rerio]
gi|47938816|gb|AAH71417.1| GTP binding protein like [Danio rerio]
Length = 248
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + ++ +R+HR E +MV+GVPNVGKSS+INALR +++KKGKA VG + G
Sbjct: 50 IVPLVSKLIESTSRFHREEERCYCLMVIGVPNVGKSSLINALRRTYLKKGKASKVGAEPG 109
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+T++V++++++ E+P+I++LDTPG+ PRI+N+E GM+LA C T+ DHLVGE IAD++L
Sbjct: 110 ITKAVLTKIQVCERPIIHLLDTPGVLPPRIENIETGMKLALCGTVLDHLVGEDVIADFLL 169
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVS--SNSVRMFPDTGEV 324
F LNR + YV+ ++L+EP DDI +L A+K +R ++ N PD
Sbjct: 170 FSLNRLERFSYVEKYSLEEPCDDIQHVLKCIAVKLGKTRRVKAITGVGNITVQLPDYSAA 229
Query: 325 ARIFIEHFRKGSFGSVMLD 343
A FI FRKG G VMLD
Sbjct: 230 AYDFIRAFRKGELGKVMLD 248
>gi|47228871|emb|CAG09386.1| unnamed protein product [Tetraodon nigroviridis]
Length = 927
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 195/348 (56%), Gaps = 68/348 (19%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRM-----PFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH 59
LK + LK+VD +IE+HD+R+ P +GRN + Q+++ ++RP +L+LN
Sbjct: 639 LKQMRASLKSVDCIIEIHDARISFPYIPLSGRNPVFQETL-DVRPHLLILN--------- 688
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+K+ + +S+ Q +L TL
Sbjct: 689 --------KKDLADVSDK-------------QNLLKTL---------------------- 705
Query: 120 VGVPNVGKSSIINALRSSHMKK--GKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
K + N L + +K+ ++PT+ + + R+ R+E + +MV+GVP
Sbjct: 706 ------AKKGVKNVLFTDCLKQRDESVQQLVPTVVEMIKSSPRFARSENTSYCLMVIGVP 759
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS+IN+LR +++KKG+A VG + G+T++V++++++ ++P++++LDTPG+ PRI+
Sbjct: 760 NVGKSSLINSLRRTYLKKGRASRVGGEPGITKAVLTKIQVCDRPIVHLLDTPGVLPPRIE 819
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
++E GM+LA C T+ DHLVGE IADY+L+ LNR G + YV+ ++L++PSDDI +L +
Sbjct: 820 SVETGMKLALCGTILDHLVGEDVIADYLLYSLNRLGKFSYVEKYDLEQPSDDIQFVLKRI 879
Query: 298 AIK--KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+K K +A N + P+ A FI FRKG G V+LD
Sbjct: 880 AVKLGKTQRVKAITGVGNVTVVVPNYTAAAYDFIRAFRKGELGQVVLD 927
>gi|149061481|gb|EDM11904.1| rCG47900, isoform CRA_a [Rattus norvegicus]
Length = 272
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 169/324 (52%), Gaps = 61/324 (18%)
Query: 26 MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP 85
+PF+GRN L Q+ + ++P +LVLNK DL + + I + + E+ + VIFT
Sbjct: 5 IPFSGRNPLFQE-LLGLKPHLLVLNKMDLADLTEQQKIVQHL--EEKGLRNVIFT----- 56
Query: 86 NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
N ++ ++K+
Sbjct: 57 ----------------------------------------------NCIKDENIKQ---- 66
Query: 146 PILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA 205
I+P + + RYHR E +MVVGVPNVGKSS+IN+LR H++ GKA VG +
Sbjct: 67 -IIPKVTELIGCSYRYHRAENPEYCIMVVGVPNVGKSSLINSLRRQHLRTGKAARVGGEP 125
Query: 206 GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYI 265
G+TR+V S++++ E+PL+++LDTPG+ PRI ++E G++LA C T+ DHLVGE +ADY+
Sbjct: 126 GITRAVTSRIQVCERPLMFLLDTPGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYL 185
Query: 266 LFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGE 323
L+ LNR G + YV + L SD I +L AIK K + + N + PD
Sbjct: 186 LYTLNRHGLFGYVQHYALASASDHIEWVLKNVAIKLGKTRKVKVLTGTGNVNVIQPDYAI 245
Query: 324 VARIFIEHFRKGSFGSVMLDRDFL 347
AR F+ FR G G VMLDRD +
Sbjct: 246 AARDFLRTFRSGRLGQVMLDRDII 269
>gi|63101376|gb|AAH95071.1| Gtpbpl protein [Danio rerio]
gi|197247070|gb|AAI65080.1| Gtpbpl protein [Danio rerio]
Length = 238
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 135/199 (67%), Gaps = 2/199 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + ++ +R+HR E +MV+GVPNVGKSS+INALR +++KKGKA VG + G
Sbjct: 40 IVPLVSKLIESTSRFHREEERCYCLMVIGVPNVGKSSLINALRRTYLKKGKASKVGAEPG 99
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+T++V++++++ E+P+I++LDTPG+ PRI+N+ GM+LA C T+ DHLVGE IAD++L
Sbjct: 100 ITKAVLTKIQVCERPIIHLLDTPGVLPPRIENIGTGMKLALCGTVLDHLVGEDVIADFLL 159
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVS--SNSVRMFPDTGEV 324
F LNR + YV+ ++L+EP DDI +L A+K +R ++ N PD
Sbjct: 160 FSLNRLERFSYVEKYSLEEPCDDIQHVLKCIAVKLGKTRRVKAITGVGNITVQLPDYSAA 219
Query: 325 ARIFIEHFRKGSFGSVMLD 343
A FI FRKG G VMLD
Sbjct: 220 AYDFIRAFRKGELGKVMLD 238
>gi|12654203|gb|AAH00920.1| MTG1 protein, partial [Homo sapiens]
Length = 271
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 170/320 (53%), Gaps = 61/320 (19%)
Query: 30 GRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKG 89
GRN L Q+++ ++P +LVLNK DL + + I + + E + VIFT
Sbjct: 1 GRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQHLEGEG--LKNVIFT--------- 48
Query: 90 VQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILP 149
N ++ ++K+ I+P
Sbjct: 49 ------------------------------------------NCVKDENVKQ-----IIP 61
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
+ + RYHR E +MV+GVPNVGKSS+IN+LR H++KGKA VG + G+TR
Sbjct: 62 MVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPGITR 121
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ L
Sbjct: 122 AVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTL 181
Query: 270 NRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEVARI 327
N+ + YV + L D++ +L A+K K + + N + P+ AR
Sbjct: 182 NKHQRFGYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLTGTGNVNVIQPNYPAAARD 241
Query: 328 FIEHFRKGSFGSVMLDRDFL 347
F++ FR+G GSVMLD D L
Sbjct: 242 FLQTFRRGLLGSVMLDLDVL 261
>gi|296221527|ref|XP_002756785.1| PREDICTED: mitochondrial GTPase 1-like [Callithrix jacchus]
Length = 248
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + ++ RYHR E MV+GVPNVGKSS+IN+LR H++KGKA VG + G
Sbjct: 36 IIPMATELIESSHRYHRGEXXXXXXMVIGVPNVGKSSLINSLRRQHLRKGKATKVGGEPG 95
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TR+VMS++++SE+PLI++LDTPG+ PRI ++E G++LA C T+ DHLVGE +ADY+L
Sbjct: 96 ITRAVMSRIQVSERPLIFLLDTPGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYLL 155
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGEV 324
+ LN+ + YV ++L D+I +L A+K K K + V + PD
Sbjct: 156 YTLNKYQRFGYVQHYSLGSACDNIERVLKSVAVKLGKTQKVKILTGTGDVNVIQPDYAAA 215
Query: 325 ARIFIEHFRKGSFGSVMLDRDFL 347
AR F+ FR+G G VMLD D L
Sbjct: 216 ARDFLHTFRRGLLGPVMLDLDVL 238
>gi|119581752|gb|EAW61348.1| mitochondrial GTPase 1 homolog (S. cerevisiae), isoform CRA_a [Homo
sapiens]
Length = 374
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 2/203 (0%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + RYHR E +MV+GVPNVGKSS+IN+LR H++KGKA VG + G
Sbjct: 162 IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPG 221
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L
Sbjct: 222 ITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLL 281
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEV 324
+ LN+ + YV + L D++ +L A+K K + + N + P+
Sbjct: 282 YTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLTGTGNVNVIQPNYPAA 341
Query: 325 ARIFIEHFRKGSFGSVMLDRDFL 347
AR F++ FR+G GSVMLD D L
Sbjct: 342 ARDFLQTFRRGLLGSVMLDLDVL 364
>gi|163914893|ref|NP_001106634.1| mitochondrial GTPase 1 [Xenopus (Silurana) tropicalis]
gi|338818320|sp|A9JTX2.1|MTG1_XENTR RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|160773665|gb|AAI55523.1| LOC100127874 protein [Xenopus (Silurana) tropicalis]
Length = 311
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
++P + + R+HR E T +MV+GVPNVGKSS+INALR H++KGKA VG + G
Sbjct: 113 VVPVISELVGCSQRFHREENTETCIMVIGVPNVGKSSLINALRRMHLRKGKASRVGAEPG 172
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TRSV++++++SE PLI++ DTPG+ PRI+++E GM+LA C T+ DHLVGE +ADY+L
Sbjct: 173 ITRSVLTKIQVSESPLIFLFDTPGVLSPRIESVETGMKLALCGTILDHLVGEDIMADYLL 232
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEV 324
+ LN+ +RYV+ + L++P DI LL + A+K K +A + P+
Sbjct: 233 YILNQQMQHRYVEHYGLEKPCADIETLLKRIALKLGKTQKVKAITGVGDVNITVPNYNAA 292
Query: 325 ARIFIEHFRKGSFGSVMLD 343
A FI FR+G G VMLD
Sbjct: 293 AYDFIRTFRRGQLGVVMLD 311
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 95/144 (65%), Gaps = 5/144 (3%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LKN+D ++EVHD+R+P +GRN + Q S+ ++P +L+LNK DL + +
Sbjct: 26 MAKGLKQMKTKLKNLDCIVEVHDARIPLSGRNPIFQDSL-GMKPHLLILNKMDLADLTQK 84
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ Q + VIFT+C + ++ ++P + + R+HR E T +MV+
Sbjct: 85 KRILAQLK--QQGVGNVIFTDCVKD--QNIKHVVPVISELVGCSQRFHREENTETCIMVI 140
Query: 121 GVPNVGKSSIINALRSSHMKKGKA 144
GVPNVGKSS+INALR H++KGKA
Sbjct: 141 GVPNVGKSSLINALRRMHLRKGKA 164
>gi|225708770|gb|ACO10231.1| Mitochondrial GTPase 1, mitochondrial precursor [Caligus
rogercresseyi]
Length = 332
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 174/344 (50%), Gaps = 56/344 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK ++ L D ++E+HD+R+P +GRN ++++ +RP +LVLNK DL S H
Sbjct: 26 MRKSLKQLQSLLSITDCILEIHDARIPLSGRNVEFKRTLSGVRPHILVLNKSDL--SSH- 82
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K++ ++ V ++PN V
Sbjct: 83 --------KKEDKVNIVKHLKSQDPNLSDV------------------------------ 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + R S +K ILP N R+ R ++V+G+PNVG
Sbjct: 105 ---------VFTSFRDSSIKL-----ILPKALETIHNFPRFQRGGGPEKNILVIGIPNVG 150
Query: 181 KSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSSIIN LR + G A VG GVTR++ +++K+++ PL Y+ D+PGI P +++
Sbjct: 151 KSSIINHLRKVRLNFSGDATRVGALPGVTRALQTKIKVNQDPLTYLWDSPGIVFPSLNDS 210
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
++LA C ++D L+GE +ADY+LF+LN+ ++YV L P+DDI LL + A+
Sbjct: 211 HVALKLAVCKCIRDDLIGEEIVADYLLFHLNKQAVFKYVKVLGLSAPTDDIQSLLLQVAL 270
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ W K ++++N + M P+ + + F++ FR G G V LD
Sbjct: 271 RFNWNKNVKNLATNQIEMIPNKHQASLHFLKLFRMGKLGRVNLD 314
>gi|198418040|ref|XP_002125861.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial
precursor (GTP-binding protein 7) [Ciona intestinalis]
Length = 362
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 184/349 (52%), Gaps = 63/349 (18%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLIN--SK 58
MG+GL + + LKNVD +IE+HD+R+P +GRN LQQ++ + +P +L+LNK DL+ +
Sbjct: 47 MGKGLIKMRRVLKNVDCIIEIHDARIPISGRNPGLQQALSS-KPYLLLLNKIDLVQFTKQ 105
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNP-NCK-GVQKILPTLQHISDNMTRYHRTEVYNTT 116
H I E R + ++ VIFT + C V +I+P
Sbjct: 106 HVDAIFEFYR--EKNVENVIFTELLSAGQCHPSVHRIIP--------------------- 142
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ +N ++ SH R+ R + +MVVG+
Sbjct: 143 ------------ACVNLVQKSH---------------------RHDREGDMDINIMVVGI 169
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS+I ALR+ ++ + VG G TR+VM++V++S P +Y+LDTPGI P I
Sbjct: 170 PNVGKSSLIKALRAGNLGRKGGPEVGRNPGHTRAVMNRVQVSSNPAVYLLDTPGIFEPHI 229
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
++ GM+LA C T+ DH++G +ADY+L+ LN+ ++ Y +FNL P D + LL
Sbjct: 230 TDMHVGMKLALCNTVHDHVMGPSMVADYLLYTLNKHRDFTYTKYFNLPGPIDCSLTLLKH 289
Query: 297 AAIKKKWFK-RAFDVSSNSVRM-FPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + F+ RA + V + PD + A +F++ FR+G G+ +LD
Sbjct: 290 ISNETNQFQTRAVQTGTGKVHVKIPDFDQAASVFLKAFREGKLGNFLLD 338
>gi|405965346|gb|EKC30727.1| Mitochondrial GTPase 1 [Crassostrea gigas]
Length = 320
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 58/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G+ + L+++D V+E+HD+R+PF+GR L + ++ ++ VL+LNK DL + +
Sbjct: 31 MQKGIAQLLARLRSIDCVLEIHDARIPFSGRTPLFKDMMK-MKAHVLLLNKCDLADLSRK 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +K++KE + +V+FTN N K ++ L L
Sbjct: 90 PDIVKKLQKEG--VDKVLFTNLTAGNSKIIKHQLFPL----------------------- 124
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ A+ S RY+R + + V+GVPNVG
Sbjct: 125 ---------VVEAIHSK---------------------PRYNRETAEDYEMAVIGVPNVG 154
Query: 181 KSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN +R SH K K++ VG AGVT+ + +++ + P ++++DTPGI P++ L
Sbjct: 155 KSTFINYVRRSHTTIKKKSLRVGAVAGVTKVLSGKIRANFNPPVFLMDTPGILTPQVSEL 214
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E GM+LA C DH+VGE IADY+LF+ N+ ++RYV+ F+L EP+D++ +LL A
Sbjct: 215 EEGMKLALCGCFPDHVVGEDLIADYMLFWFNKNSDFRYVEHFSLPEPTDNVKVLLNHIAK 274
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
+ + KR S + FPD A + ++ FR+G G V+L+ DF
Sbjct: 275 ENQLVKRIKSPDSREHQFFPDYVAAATLVLKQFREGGLGPVLLE-DF 320
>gi|431908180|gb|ELK11780.1| Mitochondrial GTPase 1 [Pteropus alecto]
Length = 247
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + + RYHR E +MV+GVPNVGKSS+IN+LR H++KGKA VG + G
Sbjct: 38 IVPMVTALVGSSYRYHRGENAEYCIMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPG 97
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TR+VMS++++ E+P +++LDTPG+ PRI ++E G++LA C T+ DHLVGE +ADY+L
Sbjct: 98 ITRAVMSKIQVCERPPMFLLDTPGVLAPRIGSVETGLKLALCGTVLDHLVGEETLADYLL 157
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGEV 324
+ LNR YV + LD DD+V +L + A++ K K + V + P+
Sbjct: 158 YTLNRHQLLGYVQHYGLDGACDDVVSVLKRVAVRLGKMQKVKVLTGTGDVNVIQPNYTAA 217
Query: 325 ARIFIEHFRKGSFGSVMLDRDFL 347
AR F+ FR G G VMLDRD L
Sbjct: 218 ARDFLRTFRSGLLGPVMLDRDML 240
>gi|449504781|ref|XP_002186754.2| PREDICTED: mitochondrial GTPase 1 [Taeniopygia guttata]
Length = 299
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 169/345 (48%), Gaps = 83/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GL+ + L+ D ++EVHD+R+P +GRN LQ+++ +RP VLVLNK DL + + +
Sbjct: 36 MAKGLRQMRLALRRADCLVEVHDARIPLSGRNPALQEAL-GVRPHVLVLNKMDLADVRRQ 94
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E+V +P L + + RYHR E ++V+
Sbjct: 95 PAVLEQV--------------------------VPWLPGLVADGPRYHRAESSEHNILVI 128
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GVPNVGKSS+IN+LR H+KKG+A V G P +
Sbjct: 129 GVPNVGKSSLINSLRRLHLKKGRA--------------------------TAVGGEPGI- 161
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
T++V+S++++ EKPL+Y++DTPG+ PR+ ++E
Sbjct: 162 ---------------------------TKAVLSRIQVCEKPLMYLVDTPGVLPPRLGDVE 194
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM+LA C + DHLVGE +ADY+L+ LN+ +RYV + L +P D I LL A+
Sbjct: 195 TGMKLALCGAIHDHLVGEDVMADYLLYTLNKQQQFRYVQRYGLGQPCDHIEPLLKHVALS 254
Query: 301 KKWFK--RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + + N M + A F+ FR G G V LD
Sbjct: 255 QGRTQKVKVLTGTGNVNMMMLNYPAAAYEFLRDFRAGRLGRVTLD 299
>gi|344253970|gb|EGW10074.1| Mitochondrial GTPase 1 [Cricetulus griseus]
Length = 244
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 7/218 (3%)
Query: 132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
N ++ ++K+ I+P L + RY+R E VMV+GVPNVGKSS+IN+LR
Sbjct: 28 NCVKDENIKQ-----IIPKLMELIKYSYRYNRAENMEYCVMVIGVPNVGKSSLINSLRRQ 82
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
H++ GKA VG + G+TR+V S++++ E+PL ++LDTPG+ PRI+++E G++LA C T+
Sbjct: 83 HLRTGKATRVGGEPGITRAVTSRIQVCERPLTFLLDTPGVLAPRIESVETGLKLALCGTV 142
Query: 252 QDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFD 309
DHLVGE +ADY+L+ LNR G + YV + L D I +L A+K K +
Sbjct: 143 LDHLVGEETMADYLLYTLNRHGLFGYVQHYGLASACDHIEWVLKNVAVKLGKTRKVKVLT 202
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+ N + PD AR F+ FR G G VMLDRD +
Sbjct: 203 GTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDLI 240
>gi|345806367|ref|XP_849529.2| PREDICTED: mitochondrial GTPase 1-like, partial [Canis lupus
familiaris]
Length = 211
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
++P ++ + ++ RYHR E +V+G+PNV KSS+INALR H++KGKA VG + G
Sbjct: 1 VIPMVRGLVESSHRYHRQENLEYCALVIGIPNVCKSSLINALRRQHLRKGKATRVGGEPG 60
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TR+VMS++++ E+PL+++LDTPG+ PRI ++E G++LA C T+ DHLVGE +ADY+L
Sbjct: 61 ITRAVMSRIQVCERPLMFLLDTPGVLAPRIQSVEMGLKLALCGTVLDHLVGEETLADYLL 120
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGEV 324
+ LNR + YV + LD DDI +L A++ K K + V + P+
Sbjct: 121 YTLNRHQLFGYVQHYGLDGACDDITRVLKHVAVRLGKTHKVKVLTGTGDVNVIQPNYPAA 180
Query: 325 ARIFIEHFRKGSFGSVMLDRDFL 347
AR F+ FR G G VMLDRD L
Sbjct: 181 ARDFLRTFRHGLLGPVMLDRDVL 203
>gi|225711162|gb|ACO11427.1| Mitochondrial GTPase 1, mitochondrial precursor [Caligus
rogercresseyi]
Length = 345
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 56/344 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK ++ L D ++E+HD+R+P +GRN ++++ +RP +LVLNK DL S H
Sbjct: 39 MRKSLKQLQSLLSITDCILEIHDARIPLSGRNVEFKRTLSGVRPHILVLNKSDL--SSH- 95
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K++ ++ V ++PN V
Sbjct: 96 --------KKEDKVNLVKHLKSQDPNLSDV------------------------------ 117
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I + R S +K ILP N R+ R ++V+G+PNVG
Sbjct: 118 ---------IFTSFRDSSIKF-----ILPKALETIHNFPRFQRGGGPEKNILVIGIPNVG 163
Query: 181 KSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSSIIN LR + G A VG GVTR++ +++K+++ PL Y+ D+PGI P +++
Sbjct: 164 KSSIINHLRKVRLNFSGDATRVGALPGVTRALQTKIKVNQDPLTYLWDSPGIVFPSLNDS 223
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
++LA C ++D L+GE +ADY+LF+LN+ ++YV L P+DDI L + A+
Sbjct: 224 HVALKLAVCKRIRDDLIGEEIVADYLLFHLNKQAVFKYVKVLGLSAPTDDIQSLPLQVAL 283
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ W K ++ +N + M P+ + + F++ FR G G V LD
Sbjct: 284 RFNWNKNVKNLVTNQIEMIPNKHQASLHFLKLFRMGKLGRVNLD 327
>gi|241620382|ref|XP_002408660.1| GTPase, putative [Ixodes scapularis]
gi|215503019|gb|EEC12513.1| GTPase, putative [Ixodes scapularis]
Length = 252
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 133/198 (67%), Gaps = 3/198 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM-KKGKAVPVGPKA 205
I+PT+ ++ N R++R E Y+ +MV+G+PNVGKSS+IN+LR +H+ +KG+A VG KA
Sbjct: 53 IVPTVANMIRNSERFNRREEYDYNIMVIGIPNVGKSSLINSLRRNHLGRKGQATRVGAKA 112
Query: 206 GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYI 265
GVT SV+ ++KIS++P +Y+LDTPG+ P + + ++LA C+ + DHLVG IADY+
Sbjct: 113 GVTMSVLERIKISQEPSMYLLDTPGVLCPTVKDPVVALQLALCSCMPDHLVGVTLIADYL 172
Query: 266 LFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVA 325
L++LN+ NY YVD+ LD P DDI ++L +AA+ K + SVR P+ A
Sbjct: 173 LYWLNQNNNYSYVDYLGLDGPCDDIRLVLYQAAVAAKSTLKRRTHEGWSVR--PNLDAAA 230
Query: 326 RIFIEHFRKGSFGSVMLD 343
+ FI FR+G G V+ D
Sbjct: 231 QQFIRGFRQGLLGRVVFD 248
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 71/104 (68%), Gaps = 4/104 (3%)
Query: 42 IRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101
I+P +L+LNKRDL + E + ++++ + + V+ +P+ + + KI+PT+ ++
Sbjct: 5 IKPHLLLLNKRDLADPDMEHHVVQQLQAQG--VRNVLHIRSSDPS-ENINKIVPTVANMI 61
Query: 102 DNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM-KKGKA 144
N R++R E Y+ +MV+G+PNVGKSS+IN+LR +H+ +KG+A
Sbjct: 62 RNSERFNRREEYDYNIMVIGIPNVGKSSLINSLRRNHLGRKGQA 105
>gi|443689180|gb|ELT91632.1| hypothetical protein CAPTEDRAFT_136843 [Capitella teleta]
Length = 325
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 179/347 (51%), Gaps = 57/347 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RGL ++ LK++D++IEVHD+R+P + RN ++++ IRP +L++NK D+ +
Sbjct: 24 MSRGLDRMQSKLKDIDLIIEVHDARIPLSCRNQQFKETLL-IRPHLLIMNKIDVGD---- 78
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
R++ H EV+ T +G Q + T N+ +
Sbjct: 79 -------RRQFYHAKEVLKT-------QGDQYTIAT------NLAK-------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G + II I+P I ++ RYHR EV + ++V+G+PNVG
Sbjct: 105 -----GHNKIITQ------------KIMPVALSILEDAPRYHRAEVDHYNMLVIGLPNVG 147
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN R + + GKA P G +AGVT SVM ++K+++ P IY+ DTPGI + ++
Sbjct: 148 KSTLINMWRKAQLGLGKATPAGAQAGVTMSVMEKIKVNDNPRIYLYDTPGIRPCNVADMH 207
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
GM++A T++DHL+GE I DY+L++LN+ + YV F+N+ + D++ L A +
Sbjct: 208 EGMKMALVGTIRDHLIGEDVIVDYLLYWLNKHEYFYYVIFYNMPDAVDNVYDFLGFVA-R 266
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+ + + + P+ A I + FR G G LD D L
Sbjct: 267 SRGLNDSSSLLTGGYMFMPNYIRAANIVLSDFRTGKLGKFNLDEDLL 313
>gi|395755858|ref|XP_002833652.2| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Pongo abelii]
Length = 210
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 150/264 (56%), Gaps = 59/264 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + I + +
Sbjct: 1 MQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQHL 59
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
E + VIFT
Sbjct: 60 EGEG--LKNVIFT----------------------------------------------- 70
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
N ++ ++K+ I+P + + RYHR E +MV+GVPNVGKSS+IN+
Sbjct: 71 ----NCVKDENVKQ-----IIPMVTELIGRSHRYHRRENLEYCIMVIGVPNVGKSSLINS 121
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA
Sbjct: 122 LRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLLFLLDTPGVLAPRIESVETGLKLAL 181
Query: 248 CATLQDHLVGEINIADYILFYLNR 271
C T+ DHLVGE +ADY+L+ LN+
Sbjct: 182 CGTVLDHLVGEETMADYLLYTLNK 205
>gi|340377255|ref|XP_003387145.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 163/346 (47%), Gaps = 76/346 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+KD + ++ +VIEVHD+R+P TGRN L+ S +LVLNK DL + K
Sbjct: 17 MARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLKFSKHK---KILVLNKYDLTDPKGM 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K+ E VI TNCR N IS N+T +
Sbjct: 74 -----KLYNENDDSVPVILTNCRGRN------------QISGNITALQK----------- 105
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+II + +K G VM+VG+PNVG
Sbjct: 106 --------AIIKLTKDDDIKNG--------------------------VKVMIVGMPNVG 131
Query: 181 KSSIINALR--SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
KSS+INALR S + KA P+ + G T++V + +KIS PLI +LDTPGI +P I +
Sbjct: 132 KSSLINALRRLSPGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTPGIMIPNIKD 191
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LAA TL VGE+NIA YIL LN Y+YV +NL+ P D LL
Sbjct: 192 EEMALKLAAVGTLDHRFVGEVNIAAYILKMLNEQKLYQYVKKYNLEGPCHDTDELLHNVG 251
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + F D G A FI++FR+G FG +MLDR
Sbjct: 252 QRIGALLKGG---------FVDEGRSATHFIKNFREGQFGRIMLDR 288
>gi|324510673|gb|ADY44462.1| GTPase 1 [Ascaris suum]
Length = 366
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 175/350 (50%), Gaps = 60/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M LK +E L++VD+++EVHD+R+P +GRN + +RP +LVLNK DLI+ K
Sbjct: 70 MSVQLKKMEGKLRSVDLIVEVHDARVPISGRNPQFYTQLYTVRPHILVLNKMDLIDMKLY 129
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E E+ + +++T+C+ K ++++
Sbjct: 130 RKSVEDYYMERG-VQHIVWTDCKRRKKKELREL--------------------------- 161
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ II +R R++RT VMVVG+PNVG
Sbjct: 162 ------QTKIIECIRDE---------------------PRFNRTVKTEYQVMVVGIPNVG 194
Query: 181 KSSIINALRSSHM-KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSS+IN+LRS+++ K AV G + GVT V ++V++ ++P +Y+LDTPG+ P N+
Sbjct: 195 KSSLINSLRSTNLGTKHSAVAEGARPGVTVRVQNRVRVLDRPPVYVLDTPGVLYPNCHNV 254
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIV-MLLAKA 297
M+LA C + + +ADY+LF++NR G+Y YVD F LD+ PSDDI +LL
Sbjct: 255 HESMKLAICNLILESATKPHYVADYLLFWMNRIGDYSYVDHFKLDDGPSDDIQRVLLGIC 314
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+ R + R DT A IF++ FRKG LDR+ L
Sbjct: 315 KSRNLIVTRTLAGERLTQRWDIDTA--ATIFLDLFRKGKLRDHCLDRELL 362
>gi|449280254|gb|EMC87593.1| Mitochondrial GTPase 1, partial [Columba livia]
Length = 259
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 130/207 (62%), Gaps = 18/207 (8%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + + RYHR E +++V+GVPNVGKSS+IN++R H+KKGKA VG + G
Sbjct: 61 IVPLVARLVGDSLRYHRAESTEYSILVIGVPNVGKSSLINSMRRLHLKKGKATTVGGEPG 120
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
VT++V++++++ EKPL+Y++DTPG+ PR+ +LE GM+LA C ++DHLVGE +ADY+L
Sbjct: 121 VTKAVLTRIQVCEKPLMYLVDTPGVLPPRLGDLETGMKLALCGAIRDHLVGEDIMADYLL 180
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV-- 324
+ LN+ + YV + L + DDI +L + A+ + +R V++ TG+V
Sbjct: 181 YTLNKHQQFGYVRRYGLTKACDDIQAVLRRVALAQGRTQR--------VKVLTGTGDVNM 232
Query: 325 --------ARIFIEHFRKGSFGSVMLD 343
A F+ FR G G V LD
Sbjct: 233 TMLNYPAAAYEFLRDFRAGRLGRVTLD 259
>gi|395755860|ref|XP_003780031.1| PREDICTED: mitochondrial GTPase 1-like isoform 2 [Pongo abelii]
Length = 219
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 150/273 (54%), Gaps = 68/273 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + I + +
Sbjct: 1 MQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQHL 59
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
E + VIFT
Sbjct: 60 EGEG--LKNVIFT----------------------------------------------- 70
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
N ++ ++K+ I+P + + RYHR E +MV+GVPNVGKSS+IN+
Sbjct: 71 ----NCVKDENVKQ-----IIPMVTELIGRSHRYHRRENLEYCIMVIGVPNVGKSSLINS 121
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA
Sbjct: 122 LRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLLFLLDTPGVLAPRIESVETGLKLAL 181
Query: 248 C---------ATLQDHLVGEINIADYILFYLNR 271
C T+ DHLVGE +ADY+L+ LN+
Sbjct: 182 CVLTSAAASTGTVLDHLVGEETMADYLLYTLNK 214
>gi|340381926|ref|XP_003389472.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 162/345 (46%), Gaps = 76/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+KD + ++ +VIEVHD+R+P TGRN L+ S +LVLNK DL + K
Sbjct: 17 MARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLKFSKHK---KILVLNKYDLTDPKGM 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K+ E VI TNCR N IS N+T +
Sbjct: 74 -----KLYNENDDSVPVILTNCRGRN------------QISGNITALQK----------- 105
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+II + +K G VM+VG+PNVG
Sbjct: 106 --------AIIKLTKDDDIKNG--------------------------VKVMIVGMPNVG 131
Query: 181 KSSIINALR--SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
KSS+INALR S + KA P+ + G T++V + +KIS PLI +LDTPGI +P I +
Sbjct: 132 KSSLINALRRLSPGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTPGIMIPNIKD 191
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LAA TL VGE+NIA YIL LN Y+Y+ +NL+ P D LL
Sbjct: 192 EEMALKLAAVGTLDHRFVGEVNIAAYILKTLNEQKLYQYIKKYNLEGPCHDTDELLHNVG 251
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + F D G A FI++FR+G FG +MLD
Sbjct: 252 QRIGALLKGG---------FVDEGRSATHFIKNFREGQFGRIMLD 287
>gi|312098644|ref|XP_003149118.1| hypothetical protein LOAG_13564 [Loa loa]
gi|307755716|gb|EFO14950.1| hypothetical protein LOAG_13564 [Loa loa]
Length = 363
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 177/349 (50%), Gaps = 60/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M LK + L+ VD++IEVHD+R+P TGRN S+ IRP +LV+NK DLIN
Sbjct: 65 MSVQLKRMIGKLRTVDLIIEVHDARVPITGRNPQFYSSLYAIRPHILVMNKMDLINKDLR 124
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
IE+ R + ++ +++TNC+ K ++K L LQ++ M R R E
Sbjct: 125 KPIEDYYR--DNGMTNLVWTNCK----KRLRKPLTDLQNV---MLRCLREE--------- 166
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R++RT VMVVG+PNVG
Sbjct: 167 --------------------------------------PRFNRTVKTEYQVMVVGIPNVG 188
Query: 181 KSSIINALRSSHM-KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSS+IN+LR ++ KAV G + GVT V ++V+I ++PLIYI+DTPG+ P ++
Sbjct: 189 KSSLINSLRLINLGNNQKAVEEGSRPGVTVRVQNRVRIYDQPLIYIVDTPGVLNPLARDI 248
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAA 298
M+LA C + + +ADY+L++LNRTG+Y YV+ FNL + PSDDI +L
Sbjct: 249 AGAMKLALCNLILESATQVHYVADYLLYWLNRTGDYSYVEIFNLRNGPSDDIQKVLLDIC 308
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+++ ++ V + D + A++FI F+ LD D L
Sbjct: 309 QSNDLRFQSY-IAKQRVERW-DIDKAAKLFINIFQNNKLRDHCLDNDLL 355
>gi|326430802|gb|EGD76372.1| hypothetical protein PTSG_01072 [Salpingoeca sp. ATCC 50818]
Length = 388
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 172/346 (49%), Gaps = 73/346 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS--- 57
M GL+ ++K+L+ D V+EVHD+R+PF GRN + P +L+LNK DL +
Sbjct: 27 MAAGLRAMQKNLRRCDCVLEVHDARVPFIGRNPQFKYLAGT--PRILLLNKADLAPTPQP 84
Query: 58 -KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
+ E+++ E + + S+V++ +C V++++P +
Sbjct: 85 EEKEAIMHECLPNGELVYSDVLYISCGKKQAD-VRQVMPAV------------------- 124
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ ++GK +L + QH+ +++ G+
Sbjct: 125 -----LKSIGKD------------------VLDSRQHLR---------------LLIAGM 146
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS++N LRS K K G + GVTR+V VKI + P +YILDTPG+ +P +
Sbjct: 147 PNVGKSSLVNTLRSVLANKRKCARTGDRPGVTRTVQQDVKIHDDPPVYILDTPGVMIPDL 206
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
DN + M LA TL+D LVGE ++ADY+LF LN+ G + YVD + LD PSD+I ++LA
Sbjct: 207 DNQDHAMTLAMLGTLRDELVGEEHVADYLLFSLNQLGIFSYVDRYRLDGPSDNIDVVLAA 266
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
A + + + DT A F++ FR+G G L
Sbjct: 267 VAKRIGALLKGGE---------HDTLRAACAFLDDFRRGRLGPFHL 303
>gi|225714112|gb|ACO12902.1| Mitochondrial GTPase 1, mitochondrial precursor [Lepeophtheirus
salmonis]
Length = 237
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 126/205 (61%), Gaps = 3/205 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK-KGKAVPVGPKA 205
+LP + +N RY R ++V+G+PNVGKSS+IN +R++ K G A VG
Sbjct: 22 VLPKCLEVIENFPRYERGGGAERNIIVIGIPNVGKSSLINHIRNNRFKISGDATRVGALP 81
Query: 206 GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYI 265
GVTR++ ++V++++ PL Y+ D+PGI P + N ++LA C L+D L+GE +ADY+
Sbjct: 82 GVTRALQTKVRVNQDPLTYVWDSPGILFPSVKNESVALKLAVCKCLRDDLIGEKIVADYL 141
Query: 266 LFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVA 325
LF+LN+ +++YV L+ P+D+I LL + A+ W + ++ +NS+ P+ + +
Sbjct: 142 LFHLNKYQHFKYVKTLGLEAPTDNIDTLLTQIAVNHNWINKVKNLVNNSMEEMPNKKQAS 201
Query: 326 RIFIEHFRKGSFGSVMLDRDFLELD 350
F+ FRKG FGS+ L D ELD
Sbjct: 202 TYFLMLFRKGKFGSINLYSD--ELD 224
>gi|308480071|ref|XP_003102243.1| hypothetical protein CRE_05886 [Caenorhabditis remanei]
gi|308262169|gb|EFP06122.1| hypothetical protein CRE_05886 [Caenorhabditis remanei]
Length = 293
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 176/355 (49%), Gaps = 80/355 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M LK +E L++VD+VIEVHD+R+P TGRN + + IRP +LVLNK DLI+ K +
Sbjct: 3 MSVQLKKMEAKLRSVDLVIEVHDARIPVTGRNEQFFRHLYAIRPHILVLNKCDLIDMKRY 62
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ IE+ + +V+FT+C+ K LP
Sbjct: 63 KKRIEDYYYDRG--VQKVLFTDCK--------KRLPR----------------------- 89
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N K+S++ AL +N R++RT MVVG+PNV
Sbjct: 90 --ALNDVKTSMLYAL---------------------ENTPRFNRTVKTEYQAMVVGIPNV 126
Query: 180 GKSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKSS+INA+R+ + K KAV G + GVT V ++V+I +KP IYI+DTPG+ P N
Sbjct: 127 GKSSLINAMRTHTLGIKRKAVEAGARPGVTVRVQNRVRIMDKPPIYIIDTPGVLSPDHRN 186
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD----EPSDDIVMLL 294
+E M+LA C + + V +ADY+LF+LN++ ++ Y+ + EPSDDI +L
Sbjct: 187 IEDAMKLALCDLVLESHVNLYYLADYLLFWLNQSNDFSYLKLLGIQEQQKEPSDDIQEIL 246
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEV------ARIFIEHFRKGSFGSVMLD 343
AK ++N R+ GE A+ FI+ +R F LD
Sbjct: 247 AKTC------------AANDFRIQRSMGERWDFDRGAKHFIQLYRNSKFEDSNLD 289
>gi|170575072|ref|XP_001893087.1| hypothetical protein [Brugia malayi]
gi|158601076|gb|EDP38078.1| conserved hypothetical protein [Brugia malayi]
Length = 363
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 175/350 (50%), Gaps = 60/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M LK + L+ VD++IEVHD+R+P TGRN S+ +RP +LV+NK DLIN
Sbjct: 65 MSVQLKRMIGKLRTVDLIIEVHDARVPITGRNPQFYSSLYAVRPHILVMNKMDLINENLR 124
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
IE+ R + I+ +++TNC+ K ++K L LQ++ M R R E
Sbjct: 125 KPIEDYYR--DNGITNLVWTNCK----KRLKKPLVDLQNM---MLRCLREE--------- 166
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R++RT VM+VG+PNVG
Sbjct: 167 --------------------------------------PRFNRTVKTEYQVMIVGIPNVG 188
Query: 181 KSSIINALRSSHMKKG-KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSS+IN+LR +++ KAV G + GVT V ++V+I ++P IYI+DTPG+ P +
Sbjct: 189 KSSLINSLRLTNLGNNQKAVEEGSRPGVTVRVQNRVRIFDQPPIYIVDTPGVLNPLARDA 248
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAA 298
+ M+LA C + + +ADY+L++LN+TG+Y YV+ FNL D PSD+I +L
Sbjct: 249 DGAMKLALCNLILESATQIHYVADYLLYWLNKTGDYSYVEIFNLKDGPSDNIQKVLLDIC 308
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+++ R D G A+ F + FR + LD D L+
Sbjct: 309 QSNDIRFQSYIAGQRVERWDIDRG--AKSFTDMFRNNKLRNHCLDIDLLQ 356
>gi|341901182|gb|EGT57117.1| hypothetical protein CAEBREN_01323 [Caenorhabditis brenneri]
Length = 296
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 178/358 (49%), Gaps = 79/358 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M LK +E L++VD+V+EVHD+R+P TGRN + + IRP +LVLNK DLI+ K +
Sbjct: 3 MSVQLKIMEAKLRSVDLVVEVHDARIPVTGRNEQFFRHLYAIRPHILVLNKCDLIDMKLY 62
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ IE+ + + +V+FT+C+ K LP
Sbjct: 63 KRKIEDYY--YERGVQKVLFTDCK--------KRLPR----------------------- 89
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N K S+++AL +N R++R MVVG+PNV
Sbjct: 90 --ALNDVKKSMLDAL---------------------ENTPRFNRAVKTEYQAMVVGIPNV 126
Query: 180 GKSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKSS+INA+R+ + K KAV G + GVT V ++V+I +KP IYI+DTPG+ P N
Sbjct: 127 GKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQNRVRILDKPPIYIIDTPGVLSPNHRN 186
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD---EPSDDIVMLLA 295
++ M+LA C + + V +ADY+LF+LN++G++ Y+ ++ +P DDI +LA
Sbjct: 187 IDDAMKLALCDLVLESHVNLYYLADYLLFWLNQSGDFSYLKLLGIEDQTDPIDDIQEVLA 246
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGE------VARIFIEHFRKGSFGSVMLDRDFL 347
K ++N R+ GE A+ FI+ +R F LD D
Sbjct: 247 KTC------------AANDFRIQRSMGERWDFDRAAKHFIQLYRNSKFQDSCLDNDLF 292
>gi|325180121|emb|CCA14523.1| GTPase putative [Albugo laibachii Nc14]
Length = 306
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 169/351 (48%), Gaps = 75/351 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M K ++ L +VD++IEV D+R+PFT N +L + + +P ++V NK DL NS
Sbjct: 18 MAAAKKQMQAQLDSVDVLIEVRDARIPFTSANPILDTAFNHSKPRLVVFNKCDLANSNMR 77
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+E + ++ E
Sbjct: 78 RLVETQFMQDGERTIE-------------------------------------------- 93
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+S A + + KGK V + LQ +N TR T VMV+G+PNVG
Sbjct: 94 -------NSFPRACMFTSVLKGKKVNSI--LQWCDEN-TRAQFKNTAGTMVMVLGIPNVG 143
Query: 181 KSSIINALRS----SHMKKGKA-VPVGPKAGVT-RSVMSQVKISEKPLIYILDTPGISLP 234
KSS+INA RS + + KGK VGP GVT R + QV + P IY++DTPG+ LP
Sbjct: 144 KSSLINAFRSLSSSAKLAKGKKRALVGPTPGVTIRKDIIQVNAT--PAIYVVDTPGVMLP 201
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
++N E G++LA ++D +VG+ +ADY+LF LNR + RYVD LD+P+D+I +L
Sbjct: 202 NVENQETGLKLALTGAIRDDIVGKEVLADYMLFLLNRMKSTRYVDALQLDQPTDEIEVLF 261
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGE--VARIFIEHFRKGSFGSVMLD 343
K I+++ +V P+T + A + FR+G FG LD
Sbjct: 262 KK--IQRQ---------CGAVGKDPETQDRLAAECLLAAFRRGEFGHFTLD 301
>gi|402591781|gb|EJW85710.1| hypothetical protein WUBG_03379 [Wuchereria bancrofti]
Length = 324
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 173/349 (49%), Gaps = 60/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M LK + L+ VD+++EVHD+R+P TGRN S+ +RP +LV+NK DLIN
Sbjct: 26 MSIQLKRMIGKLRTVDLIVEVHDARVPITGRNPQFYSSLYAVRPHILVMNKMDLINENLR 85
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
IE+ R + I+ +++TNC+ K ++K L LQ++ M R R E
Sbjct: 86 KPIEDYYR--DNGITNLVWTNCK----KRLKKPLVDLQNM---MLRCLREE--------- 127
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R++RT VM+VG+PNVG
Sbjct: 128 --------------------------------------PRFNRTVKTEYQVMIVGIPNVG 149
Query: 181 KSSIINALRSSHMKKG-KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSS+IN+LR +++ KAV G + GVT V ++V+I ++P IYI+DTPG+ P +
Sbjct: 150 KSSLINSLRLTNLGNNQKAVEEGSRPGVTVRVQNRVRIFDQPPIYIVDTPGVLNPLARDA 209
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAA 298
+ M+LA C + + +ADY+L++LN+TG+Y YV+ FNL + PSD+I +L
Sbjct: 210 DGAMKLALCNLILESATQIHYVADYLLYWLNKTGDYSYVEIFNLKNGPSDNIHKVLLDIC 269
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+++ + R D A+ F FR + LD D L
Sbjct: 270 QSNDIRFQSYIAGQRAERW--DIDRAAKSFTNMFRNNKLRNHCLDIDLL 316
>gi|193211047|ref|NP_001122738.1| Protein Y67D2.4, isoform a [Caenorhabditis elegans]
gi|351064571|emb|CCD73032.1| Protein Y67D2.4, isoform a [Caenorhabditis elegans]
Length = 348
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 178/373 (47%), Gaps = 96/373 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLIN-SKH 59
M LK +E L++VD++IEVHD+R+P TGRN + + IRP +LVLNK DLI+ K+
Sbjct: 38 MSVQLKKMEAKLRSVDLIIEVHDARIPITGRNQQFFRHLYAIRPHILVLNKCDLIDMKKY 97
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ IE+ + + +V+FT+C+ K LP
Sbjct: 98 KHQIEDYY--YERGVQKVLFTDCK--------KRLPR----------------------- 124
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N K S+++AL +N R++RT MVVG+PNV
Sbjct: 125 --ALNDVKLSMLDAL---------------------ENTPRFNRTVKTEYQAMVVGIPNV 161
Query: 180 GKSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKSS+INA+R+ + K KAV G + GVT V ++V+I +KP +YI+DTPG+ P N
Sbjct: 162 GKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQNRVRILDKPPVYIIDTPGVLSPNHRN 221
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---------------NL 283
+E M+LA C + + V +AD++LF+LNR+ ++ Y++ NL
Sbjct: 222 VEDAMKLAMCDLVLESHVNLYYLADFLLFWLNRSEDFSYLELLGINQKFRKNSEKNEENL 281
Query: 284 D-----EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGE------VARIFIEHF 332
D P DDI +L A ++N R+ GE A+ FI+ +
Sbjct: 282 DISPKQAPIDDIQQVL------------ALTCAANDFRIQQSIGERWDFDRAAKYFIQLY 329
Query: 333 RKGSFGSVMLDRD 345
R F LD +
Sbjct: 330 RNRKFKDSCLDNE 342
>gi|345318276|ref|XP_001515317.2| PREDICTED: mitochondrial GTPase 1-like, partial [Ornithorhynchus
anatinus]
Length = 382
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 181/367 (49%), Gaps = 62/367 (16%)
Query: 28 FTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNC 87
+GRN L Q+++ IRP +LVLNK DL + K + I + KE + VIFTNC
Sbjct: 1 LSGRNPLFQETL-GIRPHLLVLNKMDLADLKEQKEIVHHLEKEG--LKNVIFTNCTKD-- 55
Query: 88 KGVQKILPTLQHISDNMTRYHRTEVYN------------------TTVMVVGVP------ 123
+ + +++P + + ++ RYHR EV T + G P
Sbjct: 56 ENINQVVPLVTKMIESSYRYHRGEVGGRRTPSCVARGAEGRGPGRTALPAEGFPPRLVPG 115
Query: 124 -------NVGKSSI-----------------INALRSSHMK-KGKAVPILPTLQHISDNM 158
+ G+ +AL++ ++ +G+A P+LP + ++
Sbjct: 116 PGVMTEESAGERGARLVSAVHFGPPPSPSSKKSALKAVQLECRGEAGPLLPVGSFPAPDL 175
Query: 159 TRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS 218
+ + V G P+ S ++ GKA VG G+TR+VMS++++
Sbjct: 176 --FLPVDERLAGEAVPGGPSTDPSEGLD----YSTWNGKASRVGGHPGITRAVMSKIQVC 229
Query: 219 EKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
E+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LN+ ++YV
Sbjct: 230 ERPLMFLLDTPGVLAPRIESVEIGLKLALCGTILDHLVGEDIMADYLLYTLNKHQRFKYV 289
Query: 279 DFFNLDEPSDDIVMLLAKAAIKKKWFKRA-FDVSSNSVRMF-PDTGEVARIFIEHFRKGS 336
D + L E DDI +L + A++ + +R + V++ PD A F+ FR G
Sbjct: 290 DHYGLGEACDDIRSVLKRIAVRLRKTQRVKVLTGTGDVKVIQPDYSAAAYDFLRAFRSGG 349
Query: 337 FGSVMLD 343
G V LD
Sbjct: 350 LGRVTLD 356
>gi|340386672|ref|XP_003391832.1| PREDICTED: mitochondrial GTPase 1-like, partial [Amphimedon
queenslandica]
Length = 271
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 142/296 (47%), Gaps = 67/296 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+KD + ++ +VIEVHD+R+P TGRN L+ S +LVLNK DL + K
Sbjct: 17 MARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLKFSKHK---KILVLNKYDLTDPK-- 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K+ E VI TNCR N IS N+T +
Sbjct: 72 ---GMKLYNENDDSVPVILTNCRGRN------------QISGNITALQK----------- 105
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+II + +K G VM+VG+PNVG
Sbjct: 106 --------AIIKLTKDDDIKNG--------------------------VKVMIVGMPNVG 131
Query: 181 KSSIINALR--SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
KSS+INALR S + KA P+ + G T++V + +KIS PLI +LDTPGI +P I +
Sbjct: 132 KSSLINALRRLSPGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTPGIMIPNIKD 191
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
E ++LAA TL VGE+NIA YIL LN Y+YV +NL+ P D LL
Sbjct: 192 EEMALKLAAVGTLDHRFVGEVNIAAYILKMLNEQKLYQYVKKYNLEGPCHDTDELL 247
>gi|297713686|ref|XP_002833294.1| PREDICTED: mitochondrial GTPase 1-like, partial [Pongo abelii]
Length = 130
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 96/125 (76%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
I+P + + RYHR E +MV+GVPNVGKSS+IN+LR H++KGKA VG + G
Sbjct: 1 IIPMVTELIGRSYRYHRRENLEYCIMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPG 60
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L
Sbjct: 61 ITRAVMSKIQVSERPLLFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLL 120
Query: 267 FYLNR 271
+ LN+
Sbjct: 121 YTLNK 125
>gi|90077914|dbj|BAE88637.1| unnamed protein product [Macaca fascicularis]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 59/242 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + +
Sbjct: 1 MKSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQ--KTMK 57
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
R E + VIFT
Sbjct: 58 RLEGEGLKNVIFT----------------------------------------------- 70
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
N L+ ++K+ I+P + + + RYHR E +MV+GVPNVGKSS+IN+
Sbjct: 71 ----NCLKDENVKQ-----IIPMVTELMGSSPRYHRGENLEYCIMVIGVPNVGKSSLINS 121
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E G++LA
Sbjct: 122 LRRQHLRKGKAARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAPRIESVETGLKLAL 181
Query: 248 CA 249
C
Sbjct: 182 CG 183
>gi|348686384|gb|EGZ26199.1| hypothetical protein PHYSODRAFT_297549 [Phytophthora sojae]
Length = 319
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 74/340 (21%)
Query: 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
+ VD++IEV D+R+P++ N +L+++ +P ++V NK DL NS + +E++ +++
Sbjct: 31 QMDAVDVLIEVRDARIPWSSANPVLEEAFGKSKPRLVVFNKSDLANSNMQQRVEQQCKQQ 90
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
++ +FT+ KG K L + + + + VMVVG+PNVGKSS+
Sbjct: 91 LGTATDCLFTSV----TKG--KRLQAILQWCNKHSGAQFKSTAGSMVMVVGIPNVGKSSL 144
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
IN R +S+N
Sbjct: 145 INEFR-----------------RLSNN--------------------------------- 154
Query: 191 SHMKKG-KAVPVGPKAGVT-RSVMSQVK---ISEKPLIYILDTPGISLPRIDNLECGMRL 245
M KG K VGP GVT R+ + +V+ +++KP +Y++DTPG+ LP I + E GMRL
Sbjct: 155 QKMAKGRKRATVGPTPGVTVRNDIIKVRSGVVNDKPAVYVVDTPGVMLPNIPSAETGMRL 214
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
A ++D +VG IADY+LF LN+ + RYVD L P+DDI L +K
Sbjct: 215 ALTGAIKDEVVGTELIADYMLFLLNQMKSTRYVDALKLPRPTDDIDELFGLV------YK 268
Query: 306 RAFDVSSNSVRMFPDTGE--VARIFIEHFRKGSFGSVMLD 343
R + PD A+ ++ FR G+FG+ LD
Sbjct: 269 RCGALGKE-----PDVQNKLAAQFLLQEFRHGAFGNFTLD 303
>gi|391346703|ref|XP_003747608.1| PREDICTED: mitochondrial GTPase 1-like [Metaseiulus occidentalis]
Length = 336
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 171/354 (48%), Gaps = 68/354 (19%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
G+ ++++ L +D +IEVHD+R+P +GRN + ++ RP +LV NK D I K +
Sbjct: 25 GMAEVQRKLTKMDCIIEVHDARVPLSGRNQKFLERLRAARPHLLVYNKVDTIPRKTVPYL 84
Query: 64 EEKVRKEQS------HISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTT 116
++ V +++S H + + + +N K + KI+P T++ I + T
Sbjct: 85 KKIVTEKESSSPFPLHGTPLFCSATKN---KRIDKIVPKTVKLIHEFFKHNADFAKLEYT 141
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+M+VGVPNVGKSSIINA+R + G+
Sbjct: 142 IMIVGVPNVGKSSIINAVRET-----------------------------------CTGL 166
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
N+ A VG + G+TRSV+ +++S+ P IY++D+PG+ P
Sbjct: 167 TNM------------------ATRVGAQPGITRSVLQTIRVSQHPKIYLVDSPGVLEPTP 208
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
+ E +RLA C T D LVG +A Y+ ++ G Y ++ D+P D + LL
Sbjct: 209 VSYERALRLALCGTAIDSLVGNELMAAYLFNFMQTRGITSYCNYMGFDKPVDSLPELLRG 268
Query: 297 AA--IKKKWFKRAFDVSSN-SVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
A ++ + R FD + SV++ D A+ FI FR+G +G ++LD + L
Sbjct: 269 CASMLQSRRKTRNFDGTGGYSVKL--DLELAAKFFIMGFRRGEYGKILLDDEDL 320
>gi|320168383|gb|EFW45282.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 167/349 (47%), Gaps = 71/349 (20%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+++I ++L+++D VIEVHD+R+P +GRN LL Q++Q +P L+LNK DL +
Sbjct: 25 MARGMREIARNLQHIDYVIEVHDARVPVSGRNPLL-QALQ--KPSTLLLNKMDLGDPAVN 81
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM-TRYHRTEVYNTTVMV 119
+ + ++ E + V+ T+ + + + + HI N+ + M+
Sbjct: 82 KIAKARLH-EINPRHNVVLTSA---TLRLERALTLVVDHILANVPAERADKDGEGIHAMI 137
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
VG+PNVGKSS INALR +G + P +P +
Sbjct: 138 VGMPNVGKSSTINALRRLLTGEGARAKVGP--------------------------IPGI 171
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
TR+VM + IS P I ++DTPGI P I N+
Sbjct: 172 ----------------------------TRAVMQPLHISRDPKIMLIDTPGIMAPHIPNV 203
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G++LAA T DH VGE IADYILF LN + YV +N+D+P DDI + L+ A
Sbjct: 204 EVGLKLAAVGTFIDHQVGEALIADYILFSLNLRRKFDYVKRYNMDQPCDDINVFLSALAQ 263
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ +++ T AR FI+ +R+G+ G + LD +E
Sbjct: 264 HSGLVLKGGLLNT--------TLAAAR-FIKDYREGALGRLTLDDAIVE 303
>gi|320168412|gb|EFW45311.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 167/349 (47%), Gaps = 71/349 (20%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG+++I ++L+++D VIEVHD+R+P +GRN LL Q++Q +P L+LNK DL +
Sbjct: 25 MARGMREIARNLQHIDYVIEVHDARVPVSGRNPLL-QALQ--KPSTLLLNKMDLGDPAVN 81
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM-TRYHRTEVYNTTVMV 119
+ + ++ E + V+ T+ + + + + HI N+ + M+
Sbjct: 82 KIAKARL-HEINPRHNVVLTSA---TLRLERALTLVVDHILANVPAERADKDGEGIHAMI 137
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
VG+PNVGKSS INALR +G + P +P +
Sbjct: 138 VGMPNVGKSSTINALRRLLTGEGARAKVGP--------------------------IPGI 171
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
TR+VM + IS P I ++DTPGI P I N+
Sbjct: 172 ----------------------------TRAVMQPLHISRDPKIMLIDTPGIMAPHIPNV 203
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G++LAA T DH VGE IADYILF LN + YV +N+D+P DDI + L+ A
Sbjct: 204 EVGLKLAAVGTFIDHQVGEALIADYILFSLNLRRKFDYVKRYNMDQPCDDINVFLSALAQ 263
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ +++ T AR FI+ +R+G+ G + LD +E
Sbjct: 264 HSGLVLKGGLLNT--------TLAAAR-FIKDYREGALGRLTLDDAIVE 303
>gi|196008297|ref|XP_002114014.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
gi|190583033|gb|EDV23104.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
Length = 278
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 153/344 (44%), Gaps = 95/344 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G+ ++ L D V+EV D+R+PF+ RN + + RP VL+LNK DL
Sbjct: 25 MAKGMHKMQAVLVRCDCVLEVRDARIPFSSRNEKFSRILAG-RPRVLILNKADLSAKNTR 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+I +R H G+ SDN + R +MV+
Sbjct: 84 KIIPAALRSMNEH---------------GIS---------SDNKKGFFR-------IMVI 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKSS+INA+R KG A H+ GVP
Sbjct: 113 GLPNVGKSSVINAIRRIRKNKGNAA-------HVG-------------------GVP--- 143
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
G+TR+V + +++ P +++DTPGI + ++E
Sbjct: 144 -------------------------GITRAVQTNIEVCSNPKTFLVDTPGIMPTYVRDVE 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA T++DHL+GE +IADY+LF LNR + YV++F LD+ +DDI LL K
Sbjct: 179 VGFKLALVGTIKDHLIGEEHIADYLLFTLNRQKQFSYVEYFGLDDCTDDIDQLLVHIGHK 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
++ + D + A F+ FR G G+++LD+
Sbjct: 239 MGALRKGGVL---------DLKQAATRFLTKFRHGHLGTILLDK 273
>gi|221485677|gb|EEE23958.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 459
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 170/348 (48%), Gaps = 63/348 (18%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M R IEK+LK+VD V+EV D+R P T N L + + + ++ +V VLNK DL++ K
Sbjct: 132 MNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLV-VLNKADLVH-K 189
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTTV 117
+ L + V ++ C P K V K++ L+H+ + +
Sbjct: 190 RDGLRAQAVLEDAGL---PCLLTC-APELKRVSKVVDFALEHVQPKF------KTIGVWM 239
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
++VG+PN GKSS++NA++ ++ N +RY G P
Sbjct: 240 LLVGLPNTGKSSLLNAMK-----------------RLAVNASRY-------------GSP 269
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
+ + ++ ++ + + GKA G+T+ V S +IS KP ++ DTPGI LP++
Sbjct: 270 S---NKLVEGVKRTRARAGKA------PGLTKDV-SAFQISNKPRLFCYDTPGIMLPKMK 319
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ E ++LAA + DH GE+ +ADYIL++LNR + YVD L P++DI + A
Sbjct: 320 DAEVNLKLAALGCIDDHRAGEMYVADYILYHLNRMRCFTYVDVIGLSRPTNDIQEVAAHI 379
Query: 298 AIKKKWFKRAFDVSSNSVRM--FPDTGEVARIFIEHFRKGSFGSVMLD 343
F A+ + +N R+ PD R F + FR G G LD
Sbjct: 380 ------FDAAYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKLGFFCLD 421
>gi|237842815|ref|XP_002370705.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
gi|211968369|gb|EEB03565.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
Length = 452
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 170/348 (48%), Gaps = 63/348 (18%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M R IEK+LK+VD V+EV D+R P T N L + + + ++ +V VLNK DL++ K
Sbjct: 125 MNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLV-VLNKADLVH-K 182
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTTV 117
+ L + V ++ C P K V K++ L+H+ + +
Sbjct: 183 RDGLRAQAVLEDAGL---PCLLTC-APELKRVSKVVDFALEHVQPKF------KTIGVWM 232
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
++VG+PN GKSS++NA++ ++ N +RY G P
Sbjct: 233 LLVGLPNTGKSSLLNAMK-----------------RLAVNASRY-------------GSP 262
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
+ + ++ ++ + + GKA G+T+ V S +IS KP ++ DTPGI LP++
Sbjct: 263 S---NKLVEGVKRTRARAGKA------PGLTKDV-SAFQISNKPRLFCYDTPGIMLPKMK 312
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ E ++LAA + DH GE+ +ADYIL++LNR + YVD L P++DI + A
Sbjct: 313 DAEVNLKLAALGCIDDHRAGEMYVADYILYHLNRMRCFTYVDVIGLSRPTNDIQEVAAHI 372
Query: 298 AIKKKWFKRAFDVSSNSVRM--FPDTGEVARIFIEHFRKGSFGSVMLD 343
F A+ + +N R+ PD R F + FR G G LD
Sbjct: 373 ------FDAAYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKLGFFCLD 414
>gi|355705409|gb|AES02308.1| mitochondrial GTPase 1 [Mustela putorius furo]
Length = 120
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 89/115 (77%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
MV+G+PNVGKSS+INALR H+ KGKA VG + G+TR+VMS++++ ++PL+++LDTP
Sbjct: 6 CAMVIGIPNVGKSSLINALRRQHLGKGKATRVGGEPGITRAVMSRIQVCDRPLMFLLDTP 65
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
G+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LNR + YV + LD
Sbjct: 66 GVLSPRIESVEMGLKLALCGTVLDHLVGEETLADYLLYTLNRHRLFGYVQHYGLD 120
>gi|301112340|ref|XP_002905249.1| GTPase, putative [Phytophthora infestans T30-4]
gi|262095579|gb|EEY53631.1| GTPase, putative [Phytophthora infestans T30-4]
Length = 314
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 169/354 (47%), Gaps = 87/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + VD++IEV D+R+P++ N +L+++ +P ++V NK DL NS
Sbjct: 21 MALARRQMVAQMDAVDVLIEVRDARIPWSSANPVLEEAFGKSKPRLVVFNKSDLANSN-- 78
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++++V K+ C+N L +D +
Sbjct: 79 --MQQRVEKQ-----------CKN-----------QLGEATDCLF--------------- 99
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT---VMVVGVP 177
+ + KGK LQ I ++ + + +T VMVVG+P
Sbjct: 100 ----------------TSVTKGK------RLQAILQWCNKHSQAQFKSTAGSMVMVVGIP 137
Query: 178 NVGKSSIINALR----SSHMKKGKA-VPVGPKAGVT-RSVMSQVKISEKPLIYILDTPGI 231
NVGKSS+IN R S + KG++ VGP GVT R+ + +K+++KP +Y++DTPG+
Sbjct: 138 NVGKSSLINEFRRLSNSGKLAKGRSRATVGPTPGVTVRNDI--IKVNDKPAVYVVDTPGV 195
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
LP I + E GMRLA ++D +VG IADY+LF LN+ + RYVD L P+D+I
Sbjct: 196 MLPNIPSSETGMRLALTGAIKDDVVGTELIADYMLFLLNQMKSTRYVDTLKLPGPTDNIG 255
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGE--VARIFIEHFRKGSFGSVMLD 343
L K +KR + PD + A+ + FR+G+ G+ LD
Sbjct: 256 DLF------KLVYKRCGALGKE-----PDVQDRLAAQFLLAEFRRGALGNFTLD 298
>gi|156392399|ref|XP_001636036.1| predicted protein [Nematostella vectensis]
gi|156223135|gb|EDO43973.1| predicted protein [Nematostella vectensis]
Length = 259
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 141/304 (46%), Gaps = 64/304 (21%)
Query: 41 NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPT-LQH 99
N RP VL+LNK DL+ +E ++K +S +FT+C+ + ++I+P L
Sbjct: 18 NGRPSVLLLNKMDLVEPGKR---QEVLKKFESQGIRTVFTDCKAQHHYSAKRIVPAVLDA 74
Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMT 159
+ D S+++K P
Sbjct: 75 VKDA-----------------------------EYEGSYIRKDPDKP------------- 92
Query: 160 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE 219
YH ++V G+PN GKSS+INALR +H++KGK VG G+T ++ + I++
Sbjct: 93 -YH--------LLVCGLPNTGKSSLINALRRTHLRKGKGTRVGKLPGMTTAIQEKNMIND 143
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+P +YI DTPGI P I E GM+LA+ +DH++GE IAD+IL+ LN+ YV
Sbjct: 144 EPKMYIFDTPGIMAPHIPTAEIGMKLASIGCFKDHMIGEDLIADFILYTLNKRKKLEYVQ 203
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
L+ PSD I +L A +++ + PD + I +RKG +G
Sbjct: 204 KLGLENPSDSIDFVLRHMATAQQYLIKGDR---------PDYLRASIQLISSYRKGEYGC 254
Query: 340 VMLD 343
MLD
Sbjct: 255 FMLD 258
>gi|401412526|ref|XP_003885710.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
gi|325120130|emb|CBZ55684.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
Length = 455
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 165/347 (47%), Gaps = 61/347 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFT-GRNHLLQQSVQNIRPMVLVLNKRDLINSKH 59
M R IEK+LK+VD V+EV D+R P T G N L + ++ ++VLNK DL++ K
Sbjct: 130 MNRATVAIEKNLKHVDCVLEVRDARAPLTSGNNFLTDRLARSGVKRLVVLNKADLVH-KR 188
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTTVM 118
+ L + V ++ C P K V KI+ +H+ + ++
Sbjct: 189 DGLRAQAVLEDAGL---PCLLTC-APELKRVSKIVDFAFEHVRPKF------KTIGVWML 238
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++G+PN GKSS++NA++ ++ N +RY
Sbjct: 239 LMGLPNTGKSSLLNAMK-----------------RLAVNASRY----------------G 265
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+ ++ ++ + K+GKA G+T+ V +IS KP ++ DTPGI LP++ +
Sbjct: 266 TSSNKLVEGVKRTRAKEGKA------PGLTKEV-GAFQISNKPRLFCYDTPGIMLPKMKD 318
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LAA + DH GE+ +ADYIL++LNR + YVD L P++DI + A
Sbjct: 319 AEVNLKLAALGCIDDHRAGEMYVADYILYHLNRMRCFSYVDVIGLSRPTNDIQEVAAHI- 377
Query: 299 IKKKWFKRAFDVSSNSVRM--FPDTGEVARIFIEHFRKGSFGSVMLD 343
F + + +N R+ PD R F + FR G FG LD
Sbjct: 378 -----FDVVYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKFGFFCLD 419
>gi|440797040|gb|ELR18135.1| GTPase of unknown function subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 313
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 157/340 (46%), Gaps = 80/340 (23%)
Query: 14 NVDIVIEVHDSRMPFTGRNHLLQQSV-QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQS 72
VD+V+EV D+R+PF+ N L+ + Q P +L+L+K DL N H L K
Sbjct: 41 GVDVVLEVRDARIPFSAANSTLEGVLAQRHIPRILILHKADLTN--HNLLPAPGAGKA-- 96
Query: 73 HISEVIFTNCRNPNCKGVQKILPT-LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
K +Q ++PT L+H + R + + G P+
Sbjct: 97 --------------GKAIQSLIPTALEHYKQHRQRLLGEGADDPSTSCPGYPDK------ 136
Query: 132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR-- 189
P+ T+M++G+PNVGKS+IIN+LR
Sbjct: 137 --------------PL----------------------TLMIMGLPNVGKSTIINSLRQH 160
Query: 190 ----SSHMKKG-KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
S K+G + GP GVTR ++ K+S KPL Y++DTPG+ +P ++N + G+R
Sbjct: 161 CLSDSDKKKRGSQFAKTGPLPGVTRD-LTGFKVSSKPLAYLVDTPGVMIPNVENADVGLR 219
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYR-YVDFFNLDEPSDDIVMLLAKAAIKKKW 303
LA +++ +VG+ IADY+L+ LNR + YV + LD P+DDI LL + A K
Sbjct: 220 LALTGAVKESIVGKQAIADYLLYSLNRLNAWEGYVKAWGLDGPTDDIEHLLRRIAQK--- 276
Query: 304 FKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ V D A F++ F G FGS+ LD
Sbjct: 277 ------TGAKQVEGTDDLEVAAHHFLKRFHAGGFGSLTLD 310
>gi|242013143|ref|XP_002427274.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511615|gb|EEB14536.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 211
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 89/114 (78%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
VM+VGVPNVGKSS+IN LR +++KGKA VG GVT SV +++K+ P I+++DTPG
Sbjct: 94 VMIVGVPNVGKSSLINRLRHINLRKGKATLVGSNPGVTMSVQNEIKVCTDPPIFLIDTPG 153
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
I +P + ++ECGM+LA C+ ++++L+GE IAD++L+++N+T N++YVD ++
Sbjct: 154 IFIPNVSDIECGMKLALCSCVKNNLIGEYTIADFLLYWMNKTENFKYVDILEME 207
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 46/144 (31%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M L ++ +++VD+V+EVHDSR+PF+GRN L +S+ RP +LVL K DLI++
Sbjct: 24 MRNSLAQMQAKMRSVDVVVEVHDSRIPFSGRNPLFVKSLLGTRPHILVLAKMDLIDN--- 80
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ Q ++ N +Y VM+V
Sbjct: 81 -----------------------------------SPQILTSNSIKYK--------VMIV 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKA 144
GVPNVGKSS+IN LR +++KGKA
Sbjct: 98 GVPNVGKSSLINRLRHINLRKGKA 121
>gi|384497576|gb|EIE88067.1| hypothetical protein RO3G_12778 [Rhizopus delemar RA 99-880]
Length = 277
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 106/174 (60%), Gaps = 9/174 (5%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T+MVVG+PNVGKSS+INALR + KGKA G + GVTR+V+ VK+ E P +Y++DTP
Sbjct: 60 TLMVVGMPNVGKSSLINALRRVGVGKGKAAITGAQPGVTRTVIGTVKVLEDPTVYLIDTP 119
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD 289
G+ +P ID+ +++A ++DHL E +ADY+L+ LN+ G++ YVD+F L +P++D
Sbjct: 120 GVMVPHIDDPVRSLKVALTGGIRDHLSDEQVMADYLLYRLNQFGSHGYVDWFRLGQPTND 179
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ LL A + + + D A+ F++ +R G G LD
Sbjct: 180 VNELLEGVARRVGAVVKGGQL---------DLTMAAKFFLKQYRTGKLGQFTLD 224
>gi|407928786|gb|EKG21634.1| GTP-binding domain HSR1-related protein [Macrophomina phaseolina
MS6]
Length = 360
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 162/345 (46%), Gaps = 60/345 (17%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L +D++IE D R+P T N + ++S+ R ++V K+DL S E +
Sbjct: 29 GLTKMKSMLSRIDLIIECRDYRVPLTSTNPMFEESLAG-RERLIVYTKKDLGRSGSE--L 85
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVMVVGV 122
+++V + + + T LQ + R+H ++VY
Sbjct: 86 DQQVSRAPTPLDSAANTGY-------------ALQR-EQIIRRWHAPSQVYF-------- 123
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
S H K IL + D R + +MVVG+PNVGKS
Sbjct: 124 -------------SDHRDKTDVRRIL---KFAKDYAAR--SVSLIGFRMMVVGMPNVGKS 165
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL----IYILDTPGISLPRIDN 238
S++NALR + KGKA G + G+TR V S VKI E +Y++DTPG+ +P + N
Sbjct: 166 SLLNALRLAGTGKGKAANTGAQPGITRKVGSGVKIIEGEAGTEGVYLVDTPGVFVPYVPN 225
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
+ ++LA C +++D ++ +N+ADY+LF++N Y ++ EP++D+V LL A
Sbjct: 226 ADAMLKLALCGSVKDTVIAPVNLADYLLFHVNLVDPTLYAEYH---EPTNDVVPLLEAVA 282
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K V PDT A I+ +R G FG MLD
Sbjct: 283 TKTGRL---------GVGGVPDTEAAALWVIQRWRTGHFGHFMLD 318
>gi|429327160|gb|AFZ78920.1| hypothetical protein BEWA_017610 [Babesia equi]
Length = 294
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 156/345 (45%), Gaps = 86/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M G +I K + VD ++E+ D+R PFT N + + ++VLNK DL+ SK+
Sbjct: 1 MAAGKLNITKKHRAVDCILEIRDARAPFTSSNIGILDGYTSNTSKLIVLNKSDLV-SKYT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++K + L+H +V
Sbjct: 60 -----------------------------LKKSIELLEHAG-------------LKAVVC 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++G+ S I + S++K P P+L ++VVG+PNVG
Sbjct: 78 SALSLGRISEIKSFVESNIK-----PRFPSL----------------GAWILVVGLPNVG 116
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++INAL K + V K GVT+ + +S+ P IY DTPGI LP++++ E
Sbjct: 117 KSTLINAL------KHHSFVVENKPGVTKR-LDFFHVSQNPKIYCFDTPGIMLPKMEDPE 169
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
++LAA + D GE IADYIL+ LN G Y YV ++EPSDDI + L
Sbjct: 170 INLKLAALGCINDAEAGEDYIADYILYRLNHMGCYNYVQTLGMNEPSDDISKIALHISNI 229
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I++KW NSV D + RIFI FR G FG V LD
Sbjct: 230 IERKW---------NSV----DPTQCYRIFINQFRNGHFGKVCLD 261
>gi|83286470|ref|XP_730175.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489824|gb|EAA21740.1| Drosophila melanogaster CG17141 gene product, putative [Plasmodium
yoelii yoelii]
Length = 412
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 163/341 (47%), Gaps = 66/341 (19%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIE 64
I+ L+ D++IEV D+R+PFT N+ + ++ +N + +++LNK DLI SK +L
Sbjct: 98 IKNKLEICDVIIEVRDARVPFTSTNYFITDNLKKYKNTKKNIILLNKVDLI-SKELALKA 156
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+K+ +E+++ ++ ++ N N ++ I ++ + + + M++G+PN
Sbjct: 157 QKIIEEKTNSICLLTSSKYNKNISKIRDICKEIK---------PKFKAFGLFCMLIGLPN 207
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
VGKSSIIN+ + I+ N+ +Y G N +
Sbjct: 208 VGKSSIINSFK-----------------EITYNLGKY-------------GYKNNKIAYE 237
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
+N K V AG T+ ++ Q K+S PL+Y +DTPGI LP++ + E ++
Sbjct: 238 VNR---------KKVKTNILAGTTK-LIEQYKVSNNPLLYFIDTPGIYLPKMSDKEISLK 287
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWF 304
L+A + D+ ++ + DYILF LN+ NY YV LD+P++DI ++
Sbjct: 288 LSAIGNVLDYKYNDMYVGDYILFMLNKNKNYNYVKMIGLDKPTNDI-----------RFV 336
Query: 305 KRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFGSVMLD 343
N R + D + FI+ FR G G LD
Sbjct: 337 SNVISTKLNLCRNYKYLDINGGCKFFIDMFRLGLLGQTCLD 377
>gi|68076809|ref|XP_680324.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501239|emb|CAH98040.1| conserved hypothetical protein [Plasmodium berghei]
Length = 1279
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 163/342 (47%), Gaps = 66/342 (19%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIE 64
I+ L+ D++IEV D+R+PFT N+ + ++ +N + V++LNK DLI SK +L
Sbjct: 965 IKNKLEICDVIIEVRDARVPFTSTNYFITDNLKKYKNTQKNVILLNKVDLI-SKELALKA 1023
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+K+ +E+++ ++ ++ N N ++ I ++ + + + M++G+PN
Sbjct: 1024 QKIIEEKTNSICLLTSSKYNKNISKIRDICKEIK---------PKFKAFGLFCMLIGLPN 1074
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
VGKSSIIN+ + I+ N+ +Y G N +
Sbjct: 1075 VGKSSIINSFKE-----------------ITYNLGKY-------------GYKNNKIAYE 1104
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
+N K V AG T+ ++ Q K+S PL+Y +DTPGI LP++ + E ++
Sbjct: 1105 VNR---------KKVKTNILAGTTK-LIEQYKVSNNPLLYFIDTPGIYLPKLSDKEISLK 1154
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWF 304
L+A + D+ ++ + DYILF LN+ NY YV LD+P++DI ++
Sbjct: 1155 LSAIGNVLDYKYNDMYVGDYILFMLNKNKNYNYVKIIGLDKPTNDI-----------RFV 1203
Query: 305 KRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFGSVMLDR 344
N R + D + FI+ FR G G LD
Sbjct: 1204 SNVISTKLNLCRNYKYLDINGGCKFFIDMFRLGLLGQTCLDE 1245
>gi|398404750|ref|XP_003853841.1| hypothetical protein MYCGRDRAFT_85206 [Zymoseptoria tritici IPO323]
gi|339473724|gb|EGP88817.1| hypothetical protein MYCGRDRAFT_85206 [Zymoseptoria tritici IPO323]
Length = 346
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 160/349 (45%), Gaps = 84/349 (24%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L +D+V+E D R+P T RN + + S+ R +++ K+DL SK +
Sbjct: 29 GLAKMKTMLGQIDLVVECRDYRIPLTSRNPMFENSLGG-RERMIIYTKKDL-GSKGAGME 86
Query: 64 EEKVRK--EQSHI-SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K +Q H S+VIF++ +N K V+ IL ++
Sbjct: 87 DTKRHNLIQQWHSPSQVIFSDHKNQ--KDVRYILDAIKE--------------------- 123
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+S + L +HM MVVG+PNVG
Sbjct: 124 ------RSRLRGGLTGAHM--------------------------------MVVGMPNVG 145
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI------SEKPLIYILDTPGISLP 234
KSS++NALR + KGKA G + G+TR + + VKI +Y+LDTPG+ +P
Sbjct: 146 KSSLLNALRKEGVGKGKAAYTGAQPGITRKIGTGVKIVDGDNDGGAGGVYLLDTPGVFMP 205
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ + + ++LA C +++D ++ N+ADY+LF++N Y ++ P++D ++LL
Sbjct: 206 YVPDADAMLKLALCGSVKDTVIPAFNLADYLLFHVNLVDPKVYSEY---TAPTNDAMVLL 262
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K ++ PD A I+ +R G FG+ +LD
Sbjct: 263 DAMARKTGRLQKGG---------VPDLESTALWMIQRWRTGHFGAFLLD 302
>gi|452843898|gb|EME45833.1| hypothetical protein DOTSEDRAFT_88068 [Dothistroma septosporum
NZE10]
Length = 344
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 83/348 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK--HES 61
GL + L +D++IE D R+P RN + ++S+ R ++V K+DL ++ E
Sbjct: 28 GLSKMRTMLSQIDLIIECRDYRIPLASRNPMFEESLAG-RERMIVYTKKDLGSTGGVEEQ 86
Query: 62 LIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
E +RK + ++VIF++ R+ K V++IL ++ ++
Sbjct: 87 KRHENIRKWHTP-TKVIFSDHRD--RKDVRRILDLIKDANNT------------------ 125
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
I L SH+ MVVG+PNVGK
Sbjct: 126 ---------IGGLTGSHL--------------------------------MVVGMPNVGK 144
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI------SEKPLIYILDTPGISLPR 235
SS++NALR + KGKA G + GVTR + + VKI + +Y+LDTPG+ +P
Sbjct: 145 SSLLNALRREGVNKGKAAHTGAQPGVTRKIGTGVKIVSADEETGSGGVYLLDTPGVFMPY 204
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA 295
+ + + ++LA C +++D +V N+ADY+LF++N Y ++ P++D+ LL
Sbjct: 205 VPDADAMLKLALCGSVKDTVVPPFNLADYLLFHINIHDPEVYSEY---SAPTNDVRGLLE 261
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K ++ PD A ++ +R G G+ +LD
Sbjct: 262 AMATKTGRLQKGG---------IPDLEATALWMVQRWRNGHLGTFLLD 300
>gi|225554535|gb|EEH02832.1| mitochondrial ribosome assembly protein [Ajellomyces capsulatus
G186AR]
Length = 340
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 151/342 (44%), Gaps = 75/342 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ ++K L ++D VIE D R+P T N + ++++ R + V KRDL +
Sbjct: 29 GLEKMKKMLSSIDHVIECRDFRIPATSINPVFEEALSGKRRWI-VYTKRDLGGDLKLANQ 87
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ R +Q H + F R N NT V
Sbjct: 88 RNEARIQQWHKTSKAFFTSRFDN---------------------------NTIV------ 114
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
I+ ALRS P P ++ +MVVG+PN+GKSS
Sbjct: 115 -----PIVKALRSQ--------PFNPN--------------KLTGARIMVVGMPNIGKSS 147
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLEC 241
+INALR+ MKKGKA G GVTR V +KI E+ +Y+ DTPG+ +P + + E
Sbjct: 148 LINALRNYVMKKGKAAKTGADPGVTRRVGGGIKILERAQGSVYVHDTPGVFMPYMPDSES 207
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
++LA C ++ ++ I +ADY+L+ +N Y + P++DI+ L + K
Sbjct: 208 MLKLALCGCVKHTIIPSITLADYLLYQVNLHKPRVYEKY---SPPTNDIIPFLESFSAKT 264
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
F + PD AR + +R+G FG+ ++D
Sbjct: 265 GCFAKG---------GVPDLDAAARKMVHMYREGKFGAFIMD 297
>gi|358059774|dbj|GAA94543.1| hypothetical protein E5Q_01195 [Mixia osmundae IAM 14324]
Length = 785
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 168/381 (44%), Gaps = 89/381 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTG------------------------RNHLLQ 36
M RG++ +E + ++D+V+E D+R+P T R L +
Sbjct: 320 MERGIRKMEATMASLDLVVEARDARLPITSVNTIFDSLVAGHSRSGTPRPTKGKRKSLPR 379
Query: 37 QSVQNIRPM--VLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKIL 94
+ + + P+ ++V K DL + +E+ + VR + E +F + R+ K V++IL
Sbjct: 380 RPAKPVAPVERLIVYTKADLADRMYENPLRRAVRLQTGR--EPLFADTRSD--KDVKRIL 435
Query: 95 PTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHI 154
T+ + R ++E+ T ++ K+
Sbjct: 436 DTILQAAS--LRPAQSELTRT--------DLAKT-------------------------- 459
Query: 155 SDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ 214
N R V V++ G+PNVGKSS++NALR M K KA GP AGVTR +
Sbjct: 460 --NRAREIELPVGARRVLIAGMPNVGKSSLLNALRRVGMGKAKAAMTGPVAGVTRKLTGL 517
Query: 215 VKISEKPLIYILDTPGISLPRIDNLECG----MRLAACATLQDHLVGEINIADYILF--- 267
V++ E P IY+ DTPGI +P + E G +LA A + + L+ +IADY+L+
Sbjct: 518 VRVYEDPPIYVYDTPGIMVPFLGTGEQGAERAFKLALTAGINESLIDSESIADYLLYCLS 577
Query: 268 --YLNRTGNYRYVDFFNL---DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTG 322
+ R+ + F P+DDI ++L+ A K ++ + PD
Sbjct: 578 LRFFGRSASPDLPPFLQTLTPPLPADDIEVVLSALASKTGALRKGGE---------PDLQ 628
Query: 323 EVARIFIEHFRKGSFGSVMLD 343
+ A FI+ FRKG G LD
Sbjct: 629 QAAAAFIDAFRKGHMGPWTLD 649
>gi|328770282|gb|EGF80324.1| hypothetical protein BATDEDRAFT_35054 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 170/368 (46%), Gaps = 91/368 (24%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ L+ ++ + ++D+V+EV D+R+P T NH + N R ++V NK DL N+
Sbjct: 69 KALQQLKNGIHHIDLVVEVRDARIPLTSINHQFDHFLAN-RERIVVYNKADLANANMRKP 127
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
+ + +++ ++ +++FT C N + + + +N R+ +++VVG+
Sbjct: 128 LIDALKQYRN--EDIVFT-CANTGLHAKKVLQRAIDKCRENPERFPYI-----SMIVVGI 179
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKSS+INALR + KGK V VGK
Sbjct: 180 PNVGKSSLINALRRLGVNKGK--------------------------------VTAVGKI 207
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
AGVT ++ ++VKI E P IY++DTPGI P + + G
Sbjct: 208 ----------------------AGVTTAIQTRVKIYEDPPIYLVDTPGIYDPHVASPMEG 245
Query: 243 MRLAACATLQDHLVGEINIADYILFYLNRTGNY-RYVDFFNLDEPSDDIVMLLAKAAIKK 301
++++ +D L EI+IADY+LF LN + N +Y L+ P+D I +L K +
Sbjct: 246 LKISLTGGTRDRLTQEIHIADYLLFRLNTSSNIKKYPAVLGLEHPTDQIDSVL-KHICRT 304
Query: 302 KWF-----KRAFDVSSNS-----------------VRMFPDT----GEVARIFIEHFRKG 335
K F R F++++N+ ++ PD+ AR ++ +R+G
Sbjct: 305 KGFLLNKRGRLFNLTANTGSFPSEVDETTPDDPEHPKIIPDSFLDIDRAARYMLDKYREG 364
Query: 336 SFGSVMLD 343
FG + LD
Sbjct: 365 LFGPMTLD 372
>gi|240277845|gb|EER41353.1| mitochondrial ribosome assembly protein [Ajellomyces capsulatus
H143]
gi|325093927|gb|EGC47237.1| mitochondrial ribosome assembly protein [Ajellomyces capsulatus
H88]
Length = 340
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 75/342 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ ++K L ++D VIE D R+P T N ++++ R + V KRDL +
Sbjct: 29 GLEKMKKMLSSIDHVIECRDFRIPATSINPAFEEALSGKRRWI-VYTKRDLGGDLKLANQ 87
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ R +Q H + F R N NT V
Sbjct: 88 RNEARIQQWHRTSKAFFTSRFDN---------------------------NTIV------ 114
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
I+ ALRS P P ++ +MVVG+PN+GKSS
Sbjct: 115 -----PIVKALRSQ--------PFNPN--------------KLTGARIMVVGMPNIGKSS 147
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLEC 241
+INALR+ MKKGKA G GVTR V +KI E+ +Y+ DTPG+ +P + + E
Sbjct: 148 LINALRNYVMKKGKAAKTGADPGVTRRVGGGIKILERAQGSVYVHDTPGVFMPYMPDSES 207
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
++LA C ++ ++ I +ADY+L+ +N Y + P++DI+ L + K
Sbjct: 208 MLKLALCGCVKHTIIPSITLADYLLYQVNLHKPRVYEKY---SPPTNDIIPFLESFSAKT 264
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
F + PD AR + +R+G FG+ ++D
Sbjct: 265 GCFAKG---------GVPDLDAAARKMVHMYREGKFGAFIMD 297
>gi|70950014|ref|XP_744366.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524291|emb|CAH79974.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 808
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 67/342 (19%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIE 64
I+ L D++IEV D+R+PFT N+ + ++ +N + +++LNK DLI SK +L
Sbjct: 495 IKNKLDICDVIIEVRDARVPFTSTNYFITDNLKKYKNSKKNIILLNKVDLI-SKELALKA 553
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+++ +E+++ ++ ++ N N ++ I ++ + + + M++G+PN
Sbjct: 554 QRLIEEKTNSICLLTSSKYNKNISKIRDICKEIK---------PKFKAFGLFCMLIGLPN 604
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
VGKSSIIN+ + I+ N+ +Y G N +
Sbjct: 605 VGKSSIINSFK-----------------EITYNLGKY-------------GYKNNKIAYE 634
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
+N K V AG T+ ++ Q K+S PL+Y +DTPGI LP++ + E ++
Sbjct: 635 VNR---------KKVKTNILAGTTK-LIEQYKVSNNPLLYFIDTPGIYLPKMADKEISLK 684
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWF 304
L+A + D+ ++ + DYILF LN+ NY YV LD+P++DI ++
Sbjct: 685 LSAIGNVLDYKYNDMYVGDYILF-LNKNKNYNYVKMIGLDKPTNDI-----------RFV 732
Query: 305 KRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFGSVMLDR 344
N R + D + FI+ FR G G LD
Sbjct: 733 SNVISTKLNLCRNYKYLDINGGCKFFIDMFRLGLLGQTCLDE 774
>gi|169626188|ref|XP_001806495.1| hypothetical protein SNOG_16374 [Phaeosphaeria nodorum SN15]
gi|160705782|gb|EAT76199.2| hypothetical protein SNOG_16374 [Phaeosphaeria nodorum SN15]
Length = 783
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 73/347 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L ++D+VIE D R+P T RN L +Q+++ + +LV KRDL
Sbjct: 474 GLAKMKTLLSSIDLVIECRDYRVPLTSRNPLFEQALEG-KERLLVYTKRDLGGG------ 526
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
N G + I+ Y + + T VM V
Sbjct: 527 ----------------------NRDGAESIVKGW---------YEKEGLAGTKVMFV--- 552
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
R+ + G ++ L+ + ++ ++ + ++ VM+VG+PNVGKS+
Sbjct: 553 -----------RNGKEEAGSKKSVMRVLEELKEHASK--QWKLVGHRVMIVGMPNVGKST 599
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEKP-----LIYILDTPGISLPRI 236
++NALR+ + KGK G + GVTR V S VKI SE +Y+LDTPG+ +P +
Sbjct: 600 LLNALRAQGIGKGKVAQTGAQPGVTRKVSSGVKIVPSEDEGGVGGGVYLLDTPGVFIPYV 659
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
+ M+LA C +++D ++ + +ADY+L+++N Y ++ + P++D++ LL
Sbjct: 660 PDAHAMMKLALCGSVKDTIIPPVMLADYLLYHINLHSPQLYGEYSS---PTNDVMELLRG 716
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K + + + + ++ I+ +R+G G LD
Sbjct: 717 IAEKTGRLGKGGVIDTEATSLW---------IIQRWRRGEMGKFGLD 754
>gi|22760771|dbj|BAC11327.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 96/145 (66%), Gaps = 7/145 (4%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I + + E + VIFTNC ++ N V++I+P + + RYHR E +MV
Sbjct: 94 QKIMQHLEGEG--LKNVIFTNCVKDEN---VKQIIPMVTELIGRSHRYHRKENLEYCIMV 148
Query: 120 VGVPNVGKSSIINALRSSHMKKGKA 144
+GVPNVGKSS+IN+LR H++KGKA
Sbjct: 149 IGVPNVGKSSLINSLRRQHLRKGKA 173
>gi|396479311|ref|XP_003840724.1| similar to mitochondrial GTPase [Leptosphaeria maculans JN3]
gi|312217297|emb|CBX97245.1| similar to mitochondrial GTPase [Leptosphaeria maculans JN3]
Length = 360
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 160/359 (44%), Gaps = 86/359 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL +++ L ++D+VIE D R+P T RN L + ++++ + ++V KRDL ++
Sbjct: 27 GLTKMKQLLSSIDLVIECRDYRIPLTSRNPLFESALED-KERLIVYTKRDLGGGNRDNRN 85
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
EE ++ + KG + ++ D Y
Sbjct: 86 EEIIQ---------------SWGGKGREGTTLFVRGGKDEAGEY---------------- 114
Query: 124 NVGKSSI---INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GK SI + LRS ++ K V HR VMVVG+PNVG
Sbjct: 115 -AGKKSISRVLEWLRSHAEQRWKLVG---------------HR-------VMVVGMPNVG 151
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEKPL--------------IY 224
KS+++NALR+ + KGK G + GVTR V S VKI SE +Y
Sbjct: 152 KSTLLNALRAQGVGKGKVAATGAQPGVTRKVASGVKIIASEDDTEGVHDARKVGVGGGVY 211
Query: 225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
+LDTPG+ +P + + ++LA C +++D ++ + +ADY+LF+LN Y ++ +
Sbjct: 212 LLDTPGVFIPYVPDSSAMLKLALCGSVKDTIISPVMLADYLLFHLNLHSPTLYSEYAS-- 269
Query: 285 EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P++DIV LL A + DT A I+ +R G G +LD
Sbjct: 270 -PTNDIVELLTAMARATGRLGKGGTA---------DTEATALWMIQKWRTGQMGRFLLD 318
>gi|358254703|dbj|GAA56173.1| mitochondrial GTPase 1 [Clonorchis sinensis]
Length = 375
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 168/386 (43%), Gaps = 85/386 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G+ + + NVD++IEVHD+R+PFTGR+ L Q+ Q IRP +L+LNK DL
Sbjct: 1 MRKGINAMNSKMSNVDVLIEVHDARIPFTGRSELFQKFGQ-IRPHILLLNKVDL------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVMV 119
E+V + +E+ +H +MT H E+Y T +
Sbjct: 54 ---AEEVTDVNAFRAEI-------------------FRH---SMTLNHNLAEIYFTQL-- 86
Query: 120 VGVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNT-TVMVVGVP 177
P K + LRS + + A+P + + + + +T + M VG+P
Sbjct: 87 -NSPERQKHLLRRVLRSLPKLAQTVAIPTMCSNEFDGKQSLESAESPSQSTISAMAVGIP 145
Query: 178 NVGKSSIINALR-SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-------------- 222
N GKS++INALR G A VG AG TRSV V IS L
Sbjct: 146 NSGKSTLINALRFVGRGGPGGAARVGRMAGQTRSVGQPVVISRGALGTVSNRLEWLDNSV 205
Query: 223 ------IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
I +LDTPGI P+I +L + L C + LV + DY+LF+ N
Sbjct: 206 QSSDFRIVMLDTPGILEPKIRSLSEQLSLCVCGAVDWDLVSHELLVDYLLFWWNHRKRTE 265
Query: 277 YVDFFNLDEPSDDIVMLLAKAAIKKKWF------------KRAFDV------------SS 312
YV L P+D+IV LL++ + +F R ++ S+
Sbjct: 266 YVSVLELPGPTDNIVELLSRVCARNSFFASGSRSQRPVSRSRWWEARELESLDDLNMRSA 325
Query: 313 NSVRMFPDTGEVARIFIEHFRKGSFG 338
++ R PD G A + F KG+FG
Sbjct: 326 STPR--PDFGRAAYHILRLFNKGAFG 349
>gi|389585619|dbj|GAB68349.1| hypothetical protein PCYB_132240 [Plasmodium cynomolgi strain B]
Length = 452
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 70/344 (20%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSK----H 59
+I+K + D++IEV D+R+PFT N + +S++ + +++LNK DLI K
Sbjct: 136 NIKKKIDISDLIIEVRDARLPFTSTNDFIMESIEKKNKDKKRIIILNKADLIPKKVALSA 195
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+S+IEEK K ++ F K + KI + + +M R+ ++
Sbjct: 196 KSIIEEKT-KNMCLLTSAKFN-------KSISKI----RDLCRDMKPQFRS--LGLFTLL 241
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
VG+PNVGKSSIIN+ + ++ N+ +Y N +
Sbjct: 242 VGLPNVGKSSIINSFKD-----------------VTHNLAKYGHK---NNKIAFEVNRKK 281
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
K+++I AG T+ ++ K+S PL+Y +DTPGI LP++++
Sbjct: 282 AKTNVI-------------------AGTTQ-MIDTYKVSNNPLLYFIDTPGIYLPKMEDK 321
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E ++L A D+ + + DYIL+ LN+ N+ YV LDEP++DI + A
Sbjct: 322 EISLKLCAIGNALDYKYDHMYVGDYILYTLNKRMNFNYVKMIGLDEPTNDIRFVCNVIAT 381
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K ++ N + D R FI+ FR G FG + LD
Sbjct: 382 K-------LNLCRNYKYL--DMNGGCRYFIDMFRLGLFGRICLD 416
>gi|403357291|gb|EJY78272.1| GTPase, putative [Oxytricha trifallax]
Length = 307
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 155/353 (43%), Gaps = 83/353 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E LK D+ IEV D+R+P+T N LQ + ++V NK DL N K
Sbjct: 24 MKKAMLGLEDELKKADLFIEVRDARIPYTSYNSELQNYIPQKMKRLVVFNKMDLANEKKT 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +Q H+ + N N + ++ I
Sbjct: 84 LSIIKDI--QQKHLEQ-------NKNAQPLETI--------------------------- 107
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
H+ K V + LQ + N++ +T +M+ G+PNVG
Sbjct: 108 -----------------HLSTKKNVNVQKLLQFVKQNISPQFKT--VGAWIMIGGIPNVG 148
Query: 181 KSSIINALRS-----SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
KS+IIN+LR + VG +T+S+ + KI P YI+DTPGI P+
Sbjct: 149 KSTIINSLRKKDEDLASRSDRSGAKVGGIPCITKSI-TGFKIISDPPTYIMDTPGIIQPK 207
Query: 236 I-DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD--EPSDDI-- 290
+ +N E G++L AC ++D +V N+ DYIL+ LN+ G + YV+ FNL P+D++
Sbjct: 208 LRENSEDGLKLCACNNIRDGIVELENVCDYILWKLNKEGVFAYVNRFNLAGRRPNDNLHE 267
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V+L + + K A D IF+ FR G G + LD
Sbjct: 268 VILQLQERFQCKERSNAID-----------------IFLREFRDGHLGQITLD 303
>gi|189207338|ref|XP_001940003.1| mitochondrial GTPase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976096|gb|EDU42722.1| mitochondrial GTPase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 362
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 163/360 (45%), Gaps = 86/360 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ ++ L ++D+VIE D R+P T RN L + +++ + ++V KRDL ++
Sbjct: 27 GLQKMKSLLSSIDLVIECRDYRVPLTSRNPLFEDALEG-KERIVVYTKRDLGGGSRDNKN 85
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E+ + K + + N + + I+ + Y
Sbjct: 86 EQVIAKWHYPTATMFVRNGKEAEGE-----------INGKKSVY---------------- 118
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+++ LR K+ K V HR VMVVG+PNVGKS+
Sbjct: 119 -----KLLDILREHAQKRWKLVG---------------HR-------VMVVGMPNVGKST 151
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKI--SEKPLI----------------- 223
++NALR+ + KGK G + GVTR V S VKI SE ++
Sbjct: 152 LLNALRAQGIGKGKVAATGAQPGVTRKVSSSGVKIIPSEDDMVSADAGTKNKHQGVGGGV 211
Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL 283
Y+LDTPG+ +P + + E M+LA C +++D ++ + +ADY+L++LN Y ++
Sbjct: 212 YLLDTPGVFIPYVPDAEAMMKLALCGSVKDTIIPPVMLADYLLYHLNLQSPKLYAEYAT- 270
Query: 284 DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P++DI+ LL++ A K + V + + ++ I+ +R G G +LD
Sbjct: 271 -APTNDIIELLSEIARKTGRLGKGGAVDTEATSLW---------MIQKWRNGFLGRFLLD 320
>gi|330912468|ref|XP_003295959.1| hypothetical protein PTT_04056 [Pyrenophora teres f. teres 0-1]
gi|311332282|gb|EFQ95945.1| hypothetical protein PTT_04056 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 161/352 (45%), Gaps = 86/352 (24%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
L ++D+VIE D R+P T RN L + +++ + ++V KRDL ++ E+ + K
Sbjct: 5 LASIDLVIECRDYRVPLTSRNPLFEDALEG-KERIVVYTKRDLGGVSRDNKNEQFIAKWH 63
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
I+ + N + + IS + Y ++
Sbjct: 64 YPITTMFVRNGKEAEGE-----------ISGKKSVYK---------------------LL 91
Query: 132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
+ LR K+ K V HR VMVVG+PNVGKS+++NALR+
Sbjct: 92 DILREHAKKRWKLVG---------------HR-------VMVVGMPNVGKSTLLNALRAQ 129
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQ-VKI--SEKPL-----------------IYILDTPGI 231
+ KGK G + GVTR V S VKI SE + +Y+LDTPG+
Sbjct: 130 GIGKGKVAATGAQPGVTRKVSSSGVKIIPSEDDMESADAGTKNKHQGVGGGVYLLDTPGV 189
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
+P + + E M+LA CA+++D ++ + +ADY+L+++N Y ++ P++DI+
Sbjct: 190 FIPYVPDAEAMMKLALCASVKDTIIPPVMLADYLLYHMNLQSPKLYAEYAT--APTNDII 247
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LL++ A K + V++ + ++ I+ +R G G +LD
Sbjct: 248 ELLSEIARKTGRLGKGGAVNTEATSLW---------MIQKWRNGFLGRFLLD 290
>gi|156101832|ref|XP_001616609.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805483|gb|EDL46882.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 417
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 72/345 (20%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINS----KHE 60
I+K + D+++EV D+R+PFT N + +S++ + +++LNK DLI + +
Sbjct: 102 IKKKIDICDVIVEVRDARLPFTSTNDFIMESIEKKNKDKKRIIILNKADLIPRRVALRAK 161
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++IEEK K ++ F KG+ KI + + + ++V
Sbjct: 162 NIIEEKT-KHVCLLTSAKFN-------KGISKIRDLCREMKPQFSS------LGLFALLV 207
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY-HRTEVYNTTVMVVGVPNV 179
G+PNVGKSS+IN+ + ++ N+ +Y H+ N +
Sbjct: 208 GLPNVGKSSVINSFKD-----------------VTHNLAKYGHK----NNKIAFEVNRKK 246
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
K+++I AG T+++ K+S PL+Y +DTPGI LP++++
Sbjct: 247 AKTNVI-------------------AGTTQTI-DTYKVSHNPLLYFVDTPGIYLPKMEDK 286
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E ++L A D+ + + DYIL+ LN+ ++ YV LDEP++DI + A
Sbjct: 287 EISLKLCALGNALDYKYDHMYVGDYILYTLNKQMHFNYVKMIGLDEPTNDIRFVCNVIAT 346
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K ++ N + D R FI+ FR G FG + LD+
Sbjct: 347 K-------LNLCRNY--KYLDMNGGCRYFIDLFRLGLFGRICLDK 382
>gi|425774674|gb|EKV12976.1| Mitochondrial GTPase (YlqF), putative [Penicillium digitatum Pd1]
gi|425776363|gb|EKV14583.1| Mitochondrial GTPase (YlqF), putative [Penicillium digitatum PHI26]
Length = 308
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 153/341 (44%), Gaps = 79/341 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ L +D V+E D R P T N + ++++ IR +V V KRDL + S +
Sbjct: 1 MKSMLSTIDYVVECRDYRAPVTSINPMFEEALGGIRRLV-VYTKRDLGSIPKSSTQKTIE 59
Query: 68 RKEQSH--ISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
RK QS S V FT+ + R +V
Sbjct: 60 RKLQSFDPKSAVFFTSS------------------------FSRPDV------------- 82
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
S II LR+ K V V+VVG+PNVGKS++I
Sbjct: 83 --SQIIRHLRTDAEAPDKLV----------------------GCRVLVVGMPNVGKSTLI 118
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILDTPGISLPRIDNLECG 242
N LR+S K KA+ G + G+TR + +QVKI ++ +Y+LDTPG+ +P + + E
Sbjct: 119 NNLRNSGTGKAKALKTGQQPGITRKIATQVKIIDRDNGSHVYVLDTPGVFMPYVPDAENM 178
Query: 243 MRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302
++LA C ++D+++ I +ADY+L+++N Y + EP++D+V L+ A +
Sbjct: 179 LKLALCGCVKDNVISAITLADYLLYHINLNDPTVYKRW---SEPTNDVVPLIESFARQTG 235
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ P A +FI+ +R+G G ++D
Sbjct: 236 LLAKGG---------VPMMDGAALLFIQKWRQGELGRFLVD 267
>gi|452984300|gb|EME84057.1| hypothetical protein MYCFIDRAFT_162912 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 72/342 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS--KHES 61
GL + L +D+++E D R+P T RN + + S+ M+ V K+DL +S K +
Sbjct: 28 GLAKMRTMLSQIDLIVECRDYRIPMTSRNPMFEDSLAGKERMI-VYTKKDLGSSVIKEDK 86
Query: 62 LIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
E+ +RK S+V+F+N ++ K V++IL ++ I+ R + + +MVVG
Sbjct: 87 KREQMIRKWHDP-SKVVFSNHKD--RKDVRRILDYIKEIA-----AARGSLTGSHLMVVG 138
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+PNVGKSS++NALR + +GK ++ + T T V +V + G
Sbjct: 139 MPNVGKSSLLNALRREGVGRGK----------VAHTGAQPGITRKIGTGVKIVLPDDTGS 188
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
+ +Y+LDTPG+ +P + + +
Sbjct: 189 GA---------------------------------------VYLLDTPGVFMPYVPDADA 209
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
++LA C +++D +V +N+ADY+LF +N Y D+ EP++D++ LL A K
Sbjct: 210 MLKLALCGSVKDTVVPALNLADYLLFLVNLNDARVYADY---SEPTNDVMQLLEGMARKT 266
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ PD A ++ +R G G+ +LD
Sbjct: 267 GRLMKGAQ---------PDLEGTAIWMVQRWRTGHLGTFLLD 299
>gi|378727656|gb|EHY54115.1| hypothetical protein HMPREF1120_02291 [Exophiala dermatitidis
NIH/UT8656]
Length = 338
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 16/184 (8%)
Query: 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE---- 219
T ++ T +MVVG+PNVGKSS++NALR+ + K KA G + GVTR + + VKI +
Sbjct: 127 TSLFGTRLMVVGMPNVGKSSLLNALRNVSLGKKKAARTGDQPGVTRKIGTSVKIIDGEDG 186
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
K +Y+LDTPG+ +P + + E ++LA C ++D ++ IADY+LF+LN Y
Sbjct: 187 KEGVYVLDTPGVFVPYVPDAESMLKLALCGNVKDTIIPPTTIADYLLFHLNLRDPRSYEM 246
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
F EP++D+ ++L A K+ K+ PD A F++ +R G G
Sbjct: 247 F---SEPTNDVFVVLEGLARKQGRLKKG---------GAPDFESSALQFVQRWRSGQMGR 294
Query: 340 VMLD 343
+LD
Sbjct: 295 FVLD 298
>gi|452000304|gb|EMD92765.1| hypothetical protein COCHEDRAFT_1098388 [Cochliobolus
heterostrophus C5]
Length = 361
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 165/361 (45%), Gaps = 89/361 (24%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ ++ L +D+VIE D R+P T RN L + +++ + V+V KRDL ++
Sbjct: 27 GLQKMKSLLATIDLVIECRDYRVPLTSRNPLFESALEG-KERVIVYTKRDLGGGSRDNR- 84
Query: 64 EEKVRKEQSHISEVIFT-NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
E V + H + +F N ++ + + +VM
Sbjct: 85 NEHVIAQWHHPTPTMFVRNGKDAEGEASGR----------------------KSVM---- 118
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+++ LR K+ K V HR VMVVG+PNVGKS
Sbjct: 119 ------KLLDLLREHAQKRWKLV---------------GHR-------VMVVGMPNVGKS 150
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKI--SEKPL----------------- 222
+++NALR+ + KGK G + GVTR V S VKI SE +
Sbjct: 151 TLLNALRAQGIGKGKVAATGAQPGVTRKVSSSGVKIIPSEDDVESVDVGARRKLQGVGGG 210
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
+Y+LDTPG+ +P + + E M+LA C +++D ++ + +ADY+L++LN Y ++
Sbjct: 211 VYLLDTPGVFIPYVPDAEAMMKLALCGSVKDTIIPPVMLADYLLYHLNLQSPTLYSEYA- 269
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
P+++I+ LL++ A K + + + + ++ I+ +R G+ G +L
Sbjct: 270 --PPTNEIIELLSEIAKKTGRLGKGGAIDTEATSLW---------LIQKWRSGNMGRFLL 318
Query: 343 D 343
D
Sbjct: 319 D 319
>gi|451850276|gb|EMD63578.1| hypothetical protein COCSADRAFT_37354 [Cochliobolus sativus ND90Pr]
Length = 361
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 165/361 (45%), Gaps = 89/361 (24%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ ++ L +D+VIE D R+P T RN L + +++ + V+V KRDL ++
Sbjct: 27 GLQKMKSLLATIDLVIECRDYRVPLTSRNPLFESALEG-KERVIVYTKRDLGGGSRDNR- 84
Query: 64 EEKVRKEQSHISEVIFT-NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
E V + H + +F N ++ + + +VM
Sbjct: 85 NEHVIAQWHHPTPTMFVRNGKDAEGEASGR----------------------KSVM---- 118
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+++ LR K+ K V HR VMVVG+PNVGKS
Sbjct: 119 ------KLLDLLREHAQKRWKLV---------------GHR-------VMVVGMPNVGKS 150
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKI--SEKPL----------------- 222
+++NALR+ + KGK G + GVTR V S VKI SE +
Sbjct: 151 TLLNALRAQGIGKGKVAATGAQPGVTRKVSSSGVKIIPSEDDVESTDVGARRKLQGVGGG 210
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
+Y+LDTPG+ +P + + E M+LA C +++D ++ + +ADY+L++LN Y ++
Sbjct: 211 VYLLDTPGVFIPYVPDAEAMMKLALCGSVKDTIIPPVMLADYLLYHLNLQSPTLYSEYA- 269
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
P+++++ LL++ A K + + + + ++ I+ +R G+ G +L
Sbjct: 270 --PPTNEVIELLSEIAKKTGRLGKGGTIDTEATSLW---------LIQKWRSGNMGRFLL 318
Query: 343 D 343
D
Sbjct: 319 D 319
>gi|302505842|ref|XP_003014878.1| mitochondrial GTPase (YlqF), putative [Arthroderma benhamiae CBS
112371]
gi|291178449|gb|EFE34238.1| mitochondrial GTPase (YlqF), putative [Arthroderma benhamiae CBS
112371]
Length = 344
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 159/344 (46%), Gaps = 73/344 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL+ ++ L +VD VIE D R+P T N L ++++ + +V KRDL +SK ES
Sbjct: 28 GLEKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGG-KSRTIVYTKRDLGADSKPESR 86
Query: 63 IEEK-VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
++EK + + + ++V F + N + P ++I D + +++VG
Sbjct: 87 MKEKLISRWEQKTTKVFFASRSLTNS-----VTPLAKYIKD--LPVAANSIIGYRMLIVG 139
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+PNVGKS++IN LRS + + NV K
Sbjct: 140 MPNVGKSTLINKLRS------------------------------------MTNIKNVRK 163
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLPRIDNL 239
S+++ G G+TR + + +K+ EK IY+ DTPG+ +P + N
Sbjct: 164 SAVVR--------------TGADPGITRKIGTPIKLFEKDDVGIYVYDTPGVFVPYMSNP 209
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+ +++A C ++D LV I +ADY+LF +N+ N + P++DI+ LL+ +
Sbjct: 210 DSMLKMALCGIIKDSLVPIITLADYLLFQMNQ--NLLMDMYGAYCAPTNDIMELLSAISR 267
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + D PD AR+FI +R+G G MLD
Sbjct: 268 KAGRLVKGGD---------PDYEAAARLFITQWREGKLGLFMLD 302
>gi|302663617|ref|XP_003023449.1| mitochondrial GTPase (YlqF), putative [Trichophyton verrucosum HKI
0517]
gi|291187446|gb|EFE42831.1| mitochondrial GTPase (YlqF), putative [Trichophyton verrucosum HKI
0517]
Length = 344
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 159/344 (46%), Gaps = 73/344 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL+ ++ L +VD VIE D R+P T N L ++++ + +V KRDL +SK ES
Sbjct: 28 GLEKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGG-KSRTIVYTKRDLGADSKPESR 86
Query: 63 IEEK-VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
++EK + + + ++V F + N + P ++I D + +++VG
Sbjct: 87 MKEKLISRWEQKTTKVFFASRSLKNS-----VTPLAKYIKD--LPVAANSIIGYRMLIVG 139
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+PNVGKS++IN LRS + + NV K
Sbjct: 140 MPNVGKSTLINKLRS------------------------------------MTNIKNVRK 163
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLPRIDNL 239
S+++ G G+TR + + +K+ EK IY+ DTPG+ +P + N
Sbjct: 164 SAVVR--------------TGADPGITRKIGTPIKLFEKDDVGIYVYDTPGVFVPYMSNP 209
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+ +++A C ++D LV I +ADY+LF +N+ N + P++DI+ LL+ +
Sbjct: 210 DSMLKMALCGIIKDSLVPIITLADYLLFQMNQ--NLLMDMYGAYCAPTNDIMELLSAISR 267
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + D PD AR+FI +R+G G MLD
Sbjct: 268 KAGRLVKGGD---------PDYEAAARLFITQWREGKLGLFMLD 302
>gi|347442010|emb|CCD34931.1| similar to mitochondrial GTPase 1 [Botryotinia fuckeliana]
Length = 344
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 158/347 (45%), Gaps = 80/347 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L ++D++IE D R+P T RN L +QS+ R V+V KRDL ++ L
Sbjct: 28 GLSRMKTMLSSIDLIIECRDYRVPLTSRNPLFEQSLAG-RERVIVYTKRDL---GYQGLA 83
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+K R E I + P S + H+++ T++
Sbjct: 84 VDKKR-------EAIIKDWHKP---------------SSTLFSNHKSKSDIQTIL----- 116
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+L H L H S +R +++VG+PNVGKSS
Sbjct: 117 ---------SLCKEH-----------GLAHQSLTGSR----------ILIVGMPNVGKSS 146
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI------SEKPLIYILDTPGISLPRID 237
++NALR + + +GKA G + G+TR + S VKI + +Y++DTPG+ +P +
Sbjct: 147 LLNALRMAGVNRGKAAFTGAQPGITRKIASGVKIVDPDPEAGTEGVYLVDTPGVFVPFVP 206
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFFNLDEPSDDIVMLLAK 296
+ + ++LA +++D ++ +ADY+LF++N + G Y ++ E ++DIV L
Sbjct: 207 DTDSMLKLALVGSVKDTIIAPTTLADYLLFHINLKVGGSVYKEYC---EETNDIVQFLDA 263
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + PD A I+ +R+G+ G +LD
Sbjct: 264 VCRKTGRLGKG---------GVPDVEAAALWVIQRWRQGNLGKFVLD 301
>gi|345562996|gb|EGX46002.1| hypothetical protein AOL_s00112g19 [Arthrobotrys oligospora ATCC
24927]
Length = 339
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 149/346 (43%), Gaps = 77/346 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
G+ + + L +V+++IE D R+P + RN + ++++ R ++V KRDL +
Sbjct: 31 GITKMRQLLGSVELIIECRDYRVPLSSRNPMFEKNLVG-RERMIVYTKRDLGAESLDEKT 89
Query: 64 EEKVRKEQSHISEVIFTNCR-NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
E +R+ +V+FT+C+ + + K V K + DN V T +M+ G+
Sbjct: 90 RETIRRWHKP-QKVLFTDCKSDADIKKVIKYAKDIATSVDN--------VLGTRMMLAGM 140
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKSS++NALR M KGKA + G P V
Sbjct: 141 PNVGKSSLLNALRRVGMGKGKA--------------------------AITGGQPGV--- 171
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
TRS+ + V+I P I +LDTPG+ +P + N +
Sbjct: 172 -------------------------TRSIGTTVRICSDPDIMLLDTPGVFIPYVPNTQTM 206
Query: 243 MRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302
++LA ++D L+ + + DY+LF +N Y + P++DI LL AI+
Sbjct: 207 LKLALVGCVKDTLIDPVTLCDYLLFRVNLVDPTLYSAYHT---PTNDITQLLTATAIQIG 263
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ PD A I+ +R G G +LD LE
Sbjct: 264 RLGKGG---------VPDLTATAIWLIQRYRAGDLGRFILDDVDLE 300
>gi|154322421|ref|XP_001560525.1| hypothetical protein BC1G_00553 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 158/347 (45%), Gaps = 80/347 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L ++D++IE D R+P T RN L +QS+ R V+V KRDL ++ L
Sbjct: 28 GLSRMKTMLSSIDLIIECRDYRVPLTSRNPLFEQSLAG-RERVIVYTKRDL---GYQGLA 83
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+K R E I + P S + H+++ T++
Sbjct: 84 VDKKR-------EAIIKDWHKP---------------SSTLFSNHKSKSDIRTIL----- 116
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+L H L H S +R +++VG+PNVGKSS
Sbjct: 117 ---------SLCKEH-----------GLAHQSLTGSR----------ILIVGMPNVGKSS 146
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI------SEKPLIYILDTPGISLPRID 237
++NALR + + +GKA G + G+TR + S VKI + +Y++DTPG+ +P +
Sbjct: 147 LLNALRMAGVNRGKAAFTGAQPGITRKIASGVKIVDPDPEAGTEGVYLVDTPGVFVPFVP 206
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFFNLDEPSDDIVMLLAK 296
+ + ++LA +++D ++ +ADY+LF++N + G Y ++ E ++DIV L
Sbjct: 207 DTDSMLKLALVGSVKDTIIAPTTLADYLLFHINLKVGGSVYKEYC---EETNDIVQFLDA 263
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + PD A I+ +R+G+ G +LD
Sbjct: 264 VCRKTGRLGKG---------GVPDVEAAALWVIQRWRQGNLGKFVLD 301
>gi|13358918|dbj|BAB33072.1| hypothetical protein [Macaca fascicularis]
Length = 144
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + I +++ E
Sbjct: 5 LKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQRLEGE- 62
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ VIFTNC + V++I+P + + + RYHR E +MV+GVPNVGKSS+I
Sbjct: 63 -GLKNVIFTNCLKD--ENVKQIIPMVTELMGSSPRYHRGENLEYCIMVIGVPNVGKSSLI 119
Query: 132 NALRSSHMKKGKAVPILPTL 151
N+LR H++KGKA + +L
Sbjct: 120 NSLRRQHLRKGKAARWVASL 139
>gi|154285722|ref|XP_001543656.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407297|gb|EDN02838.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 340
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 133 ALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH 192
A +S VPI+ L+ + ++ ++ +MVVG+PN+GKSS+INALR+
Sbjct: 102 AFFTSRFDNNTIVPIVKALK-----LQPFNLNKLTGARIMVVGMPNIGKSSLINALRNYA 156
Query: 193 MKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLECGMRLAACAT 250
MKKGKA G GVTR V +KI E+ +Y+ DTPG+ +P + + E ++LA C
Sbjct: 157 MKKGKAAKTGADPGVTRRVGGGIKILERAQGSVYVHDTPGVFMPYMPDSESMLKLALCGC 216
Query: 251 LQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDV 310
++ +V I +ADY+L+ +N Y + P++DI+ L + K F +
Sbjct: 217 VKHTIVPSITLADYLLYQINLHKPRVYEKY---SPPTNDIIPFLESYSAKTGCFAKG--- 270
Query: 311 SSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD AR + +R+G FG+ ++D
Sbjct: 271 ------GVPDLDAAARKMVHMYREGKFGAFIMD 297
>gi|326474306|gb|EGD98315.1| mitochondrial GTPase [Trichophyton tonsurans CBS 112818]
gi|326479264|gb|EGE03274.1| hypothetical protein TEQG_02308 [Trichophyton equinum CBS 127.97]
Length = 345
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 71/343 (20%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL+ ++ L +VD VIE D R+P T N L ++++ + +V KRDL +SK ES
Sbjct: 29 GLEKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGG-KSRTIVYTKRDLGADSKPESR 87
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
++EK+ S +F R+ + P ++I D + +++VG+
Sbjct: 88 MKEKLISRWEQKSTKVFFASRSLK----NSVTPLAKYIKD--LPVAANSIIGYRMLIVGM 141
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKS++IN LRS + + NV KS
Sbjct: 142 PNVGKSTLINKLRS------------------------------------MTNIKNVRKS 165
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLPRIDNLE 240
+++ G G+TR + + +K+ EK IY+ DTPG+ +P + N
Sbjct: 166 AVVR--------------TGADPGITRKIGTPIKLFEKDDVGIYVYDTPGVFVPYMSNPG 211
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+ +A C ++D LV I +ADY+LF +N+ N + P++DI+ LL+ + K
Sbjct: 212 SMLNMALCGIIKDSLVPIITLADYLLFQMNQ--NLLMNMYGAYCAPTNDIMELLSAISRK 269
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ D PD AR+FI +R+G G MLD
Sbjct: 270 AGRLVKGGD---------PDYEAAARLFITQWREGKLGLFMLD 303
>gi|453085133|gb|EMF13176.1| GTPase [Mycosphaerella populorum SO2202]
Length = 344
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 71/342 (20%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH--ES 61
GL ++ L +D +IE D R+P T RN + + S+ R ++V K+DL SK E
Sbjct: 29 GLAKMKTMLSQIDHIIECRDYRIPLTSRNPMFEDSLAG-RERMVVYTKKDLGGSKGTVED 87
Query: 62 LIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
++ +E S+VIF+N ++ K V++IL ++ N +R T Y +MVVG
Sbjct: 88 TKRHQLIREWHEPSKVIFSNHKD--RKDVRRILDVIKDA--NRSRGGLTGSY---LMVVG 140
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+PNVGKSS++NALR + KGK ++ + T T V ++ G
Sbjct: 141 MPNVGKSSLLNALRREGVNKGK----------VAHTGAQPGVTRKIGTGVKIIEADETGL 190
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
S +Y+LDTPG+ +P + + E
Sbjct: 191 SG---------------------------------------VYMLDTPGVFMPYVPDSEA 211
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
++LA C +++D +V N+ADY+LF++N Y ++ +P++D + LL A K
Sbjct: 212 MLKLALCGSVKDTVVPPFNLADYLLFHINLHDPTVYKEY---SQPTNDAMQLLDAVARKT 268
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + PD +A I+ +R G G+ LD
Sbjct: 269 GRLMKGGE---------PDLESIALWMIQKWRNGHLGAFTLD 301
>gi|290988049|ref|XP_002676734.1| predicted protein [Naegleria gruberi]
gi|284090338|gb|EFC43990.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 151/359 (42%), Gaps = 76/359 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K I++ LK +D VIEV D+R+P + +N + + + + ++L NK DLI+ +H+
Sbjct: 29 MAKATKQIKEKLKYIDFVIEVRDARVPISSKNKTINEIFIHKKRLIL-FNKCDLISKEHQ 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ E S + P K+L TL + + +
Sbjct: 88 EQIKKYFSSESSSAT------IEGP------KVLGTL---------------FTSAKQGL 120
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V + + + N KK K +P T ++ GVPNVG
Sbjct: 121 NVNKIVQECLHNKNIEVAPKKFKTIPY----------------------TFLIAGVPNVG 158
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K A+P GVTR M + + +LDTPGI P I+ E
Sbjct: 159 KSSIINKLIEKKKAKEGALP-----GVTRG-MGFFPMKTRENCLLLDTPGIFQPDIETNE 212
Query: 241 CGMRLAACATLQDHLVGEINIA-----------DYILFYLNRTGNYRYVDFFNLDEPSDD 289
G +L+ L DHL G + A DY+LF LNR Y YV+ L P+ +
Sbjct: 213 QGFKLSLINALPDHLFGGDSAAGGNATDLTPLIDYMLFQLNRNECYDYVEILGLKGPTKN 272
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
I LL A K K F + PD + + FR G G V+LD + LE
Sbjct: 273 IDDLLLAACKKWKMFTSGGE---------PDLNKALSHLLFWFRTGKLGQVVLDCELLE 322
>gi|328874749|gb|EGG23114.1| hypothetical protein DFA_05244 [Dictyostelium fasciculatum]
Length = 400
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 181/393 (46%), Gaps = 66/393 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR----PMVLVLNKRDLIN 56
M + K++ + LK +DIV+E+ DSR P + N LL ++ + V++ NK DL N
Sbjct: 22 MIKASKEVRETLKRIDIVLEIRDSRAPISSENPLLSDIIKEEQRENTSHVIIFNKADLSN 81
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNC----------------------RNP--------- 85
+ I++K +S V FT R+P
Sbjct: 82 HNLQKKIQQKFENRDKGVS-VAFTQAAMSKAASHAGQSAAALSQISHPRHPYNAVVTAIK 140
Query: 86 ------NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 139
N K Q+ LQ + + R E N + G N +IN ++
Sbjct: 141 FHKDWLNEKKRQQQEIQLQRLQEQKDEKERIEQLNNNNNINGSTN-----MINTTTTTTT 195
Query: 140 KKGKAVPILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPNVGKSSIINALRSSHMKKGKA 198
+ PI P N T+ +++ +MV+G+PN+GKSSIIN++R++ K+
Sbjct: 196 ----STPIQPK----KINTTKIDSSKLKKELNLMVIGLPNLGKSSIINSIRTAS-SMAKS 246
Query: 199 VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP-RIDNLECGMRLAACATLQDHLVG 257
G GVT+ + S ++ + P +++DTPGI +P + ++E + LAA ++ + ++
Sbjct: 247 AKTGALPGVTKHI-SGFRVLDDPPAFLVDTPGIMIPGSMKDIEHALTLAAIGSISERIID 305
Query: 258 EINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAIKKKWFK-----RAFDVS 311
+AD++LF +N+ G YV + E P+DDI LL+ +K + + S
Sbjct: 306 IKVVADFLLFKMNQLGQTTYVKALDYPEGPTDDIHKLLSHMCMKHGFINNHNTLESLKNS 365
Query: 312 SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
S+S + D + +++F++ +R G FG LD+
Sbjct: 366 SSSHNSY-DYNQASKLFLQMYRDGKFGHFSLDK 397
>gi|171685079|ref|XP_001907481.1| hypothetical protein [Podospora anserina S mat+]
gi|170942500|emb|CAP68152.1| unnamed protein product [Podospora anserina S mat+]
Length = 479
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 157/358 (43%), Gaps = 72/358 (20%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-----RPMVLVLNKRDLINSKH 59
L + + L NV +++E+ D R+P + N +L++S+ + R ++V KRDL
Sbjct: 128 LNKMRQSLSNVGLILELRDFRVPISSWNPVLEESLSSTSAGVPRSRIIVYTKRDLAPPAQ 187
Query: 60 ESLIEEKVRKEQ--SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
+ V Q H+ V+ T R P V+ I+
Sbjct: 188 MTSHGRPVPGTQPPGHVVRVLRTFHRPPRVNNVKDII----------------------- 224
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+G+ G S P+L ++ ++ M + VMVVG+P
Sbjct: 225 -FLGMGPHGAS---------------LQPLLDGIRDVAREMD-----SLTGLRVMVVGMP 263
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEKPL-------IYI 225
N GKS+++N LRS + GKA G + GVTR + + V+I S P ++I
Sbjct: 264 NAGKSTLLNRLRSHSLHLGKAAKTGAQPGVTRKLGTPVRILPGEDSGDPESMGLGEGVFI 323
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE 285
+DTPG+ +P + E ++LA ++D ++ + +ADY+L+ LN Y+ F +
Sbjct: 324 VDTPGVFVPYVSEPEAMLKLALVGCVKDGIIPAVTVADYLLYRLNLVRETTYLQRFGMGR 383
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P++D+ L AA + ++ D S A I+ +RKG+ G ++LD
Sbjct: 384 PTNDVHQFLRAAARRTGKLRKGGDESME---------HAADWVIQEWRKGNLGRLLLD 432
>gi|392865781|gb|EAS31607.2| mitochondrial GTPase [Coccidioides immitis RS]
Length = 340
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 154/345 (44%), Gaps = 77/345 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ + L ++D VIE D R+PFT N L + VL KR +I +K +
Sbjct: 29 GLRRMRSMLDSIDHVIECRDFRIPFTSINPLFEH--------VLGDKKRTIIYTKRDLAG 80
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ K+ +Q I + R+ + T V +
Sbjct: 81 DRKL----------------------------AMQKIESQVLRWDKR-----TSKVFVID 107
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
N KSS+ + +K + +P+ D +T Y ++VVG+PNVGKSS
Sbjct: 108 NFSKSSM-----APFIKYLRTIPL------AQDQVTGYR--------MLVVGMPNVGKSS 148
Query: 184 IINALRSSHM---KKGKAVPVGPKAGVTRSVMSQVKI--SEKPLIYILDTPGISLPRIDN 238
IN LR M KA G + GVTR V S +K+ ++ +Y+ DTPG+ +P +
Sbjct: 149 FINYLRQQCMDLPSMSKAASTGDEPGVTRKVGSPIKVLNRKQCGMYVYDTPGVFVPYVAE 208
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LA C ++ LV ++ I+DY+L+++N+ Y Y + EP++DI+ LL A
Sbjct: 209 PESMVKLATCGIIKRSLVSDLTISDYLLYHINKNKPYAYRKYC---EPTNDIMELLNAFA 265
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K + PD +R F +R+G F ++D
Sbjct: 266 LKSGCLAKG---------GVPDINMASRKFNHMWREGKFKYFVMD 301
>gi|402881901|ref|XP_003904497.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Papio anubis]
Length = 283
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+LF LNR +
Sbjct: 140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLFTLNRHQRF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
YV + L+ D I +L A+K K + F + + + PD AR F+ FR
Sbjct: 200 GYVQHYGLESACDSIERVLKSVAVKLGKTQKVKVFTGTGDVNVIQPDYPAAARDFLHTFR 259
Query: 334 KGSFGSVMLDRDFL 347
+G G +MLD D L
Sbjct: 260 RGLLGPMMLDLDIL 273
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E + VIFTNC + V++I+P + + + RYHR EV +M +
Sbjct: 94 QKIMQRLEGEG--LKNVIFTNCLKD--ENVKQIIPMVTELMGSSPRYHRGEVSERPLMFL 149
>gi|315049829|ref|XP_003174289.1| mitochondrial GTPase 1 [Arthroderma gypseum CBS 118893]
gi|311342256|gb|EFR01459.1| mitochondrial GTPase 1 [Arthroderma gypseum CBS 118893]
Length = 344
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 73/344 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL+ ++ L +VD VIE D R+P T N L ++++ + +V KRDL + K ES
Sbjct: 28 GLEKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGG-KSRTIVYTKRDLGADLKPESR 86
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
++EK+ S +F R+ + P ++I D + ++VVG+
Sbjct: 87 MKEKLISHWEQKSTRVFFASRSLR----NSVTPLAKYIKD--LPVAANSIIGYRMLVVGM 140
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKS++IN LRS + + NV KS
Sbjct: 141 PNVGKSTLINKLRS------------------------------------MTNIKNVRKS 164
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLPRIDNLE 240
+++ G G+TR + + +K+ EK IY+ DTPG+ +P + N +
Sbjct: 165 AVVR--------------TGADPGITRKIGTPIKLFEKDDVGIYVYDTPGVFVPYMSNPD 210
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF-NLDEPSDDIVMLLAKAAI 299
+++A C ++D LV I +ADY+LF +N+ + D + + P++DI+ LL +
Sbjct: 211 SMLKMALCGIIKDSLVPIITLADYLLFQMNQ---HLLSDLYGSYCAPTNDIIDLLGAISR 267
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + + PD AR+FI +R+G G MLD
Sbjct: 268 KAGRLVKGGE---------PDYEAAARLFITQWREGKLGLFMLD 302
>gi|403259231|ref|XP_003922124.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 283
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LNR +
Sbjct: 140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHQRF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFR 333
YV + L D+I +L A+K K K + V + PD AR F+ FR
Sbjct: 200 EYVQHYGLGSACDNIERMLKHVAVKLGKTKKVKMLTGTGDVNVIQPDYSAAARDFLHTFR 259
Query: 334 KGSFGSVMLDRDFL 347
+G G VMLD D L
Sbjct: 260 RGLLGPVMLDLDVL 273
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 5/120 (4%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQNSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E + V+FTNC + VQ+I+PT+ + ++ RYHR EV +M +
Sbjct: 94 QKIMQRLEGEG--LKNVVFTNCVKD--ESVQQIIPTVTELIESSHRYHRGEVSERPLMFL 149
>gi|193784968|dbj|BAG54121.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + + I + +
Sbjct: 1 MQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQHL 59
Query: 68 RKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
E + VIFTNC ++ N V++I+P + + RYHR E +MV+GVPNVG
Sbjct: 60 EGEG--LKNVIFTNCVKDEN---VKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 114
Query: 127 KSSIINALRSSHMKKGKA 144
KSS+IN+LR H++KGKA
Sbjct: 115 KSSLINSLRRQHLRKGKA 132
>gi|255952779|ref|XP_002567142.1| Pc21g00690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588853|emb|CAP94966.1| Pc21g00690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 339
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 79/345 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL ++ L +D V+E D R P T N + ++++ IR +V V KRDL + S
Sbjct: 28 GLTKMKSMLSTIDYVVECRDYRAPVTSINPMFEEALGKIRRLV-VYTKRDLGSIPQSSAQ 86
Query: 64 EEKVRKEQSH--ISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
+ RK QS S V FT+ + Q + ++H+ ++ + + V+VVG
Sbjct: 87 KATERKLQSFDPKSAVFFTSSSS-----RQDVSQIIRHLRNDAEAPDK--LVGCRVLVVG 139
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+PNVGKS++IN LR+S K KA
Sbjct: 140 MPNVGKSTLINNLRNSGTGKAKA------------------------------------- 162
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILDTPGISLPRIDN 238
+K G+ + G+TR V +QVKI ++ +Y+LDTPG+ +P + +
Sbjct: 163 -----------LKTGQ------QPGITRKVATQVKIIDRENGSHVYVLDTPGVFMPYVPD 205
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LA C ++D+++ I +ADY+L+++N Y + +P++D+V L+ A
Sbjct: 206 AENMLKLALCGCVKDNVISPITLADYLLYHINLNDPTVYKRW---SDPTNDVVPLIESFA 262
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++A ++ V M A +FI+ +R+G G ++D
Sbjct: 263 ------RQAGLLAKGGVPMM---DGAALLFIQRWRQGELGRFLVD 298
>gi|426366664|ref|XP_004050368.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Gorilla gorilla
gorilla]
Length = 283
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LN+ +
Sbjct: 140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
YV + L D+I +L A+K K + + N + P+ AR F++ FR
Sbjct: 200 GYVQHYGLGSACDNIERVLKSVAVKLGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFR 259
Query: 334 KGSFGSVMLDRDFL 347
+G GSVMLD D L
Sbjct: 260 RGLLGSVMLDLDVL 273
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 7/121 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I + + E + VIFTNC ++ N V++I+P + ++ RYHR EV +M
Sbjct: 94 QKIMQHLEGEG--LKNVIFTNCVKDEN---VKQIIPMVTELTGRSHRYHRREVSERPLMF 148
Query: 120 V 120
+
Sbjct: 149 L 149
>gi|296816673|ref|XP_002848673.1| mitochondrial GTPase 1 [Arthroderma otae CBS 113480]
gi|238839126|gb|EEQ28788.1| mitochondrial GTPase 1 [Arthroderma otae CBS 113480]
Length = 327
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 83/349 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL ++ L +VD VIE D R+P T N L ++++ + +V KRDL N K ES
Sbjct: 28 GLDKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGE-KSRTIVYTKRDLGANLKLESQ 86
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR--TEVYNTTVMVV 120
++EK+ ++R+ + T+V+ +
Sbjct: 87 MKEKL------------------------------------ISRWEKKPTKVFFAS---- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+LR+S K + LP ++ N +R ++VVG+PNVG
Sbjct: 107 -----------RSLRNSVTPLAKYIQALP----VATNSIIGYR-------MLVVGMPNVG 144
Query: 181 KSSIINALRS----SHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP 234
KS++IN LRS +++K V G G+TR + + +K+ EK IY+ DTPG+ +P
Sbjct: 145 KSTLINKLRSMTNIRNVRKSAVVRTGADPGITRKIGTPIKLFEKNDVGIYVYDTPGVFVP 204
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ N +++A C ++D LV I +ADY+LF +NR + + N P++DI+ LL
Sbjct: 205 YMSNPNSMLKMALCGIIKDSLVPIITLADYLLFQMNR--HLLMNKYQNYCPPTNDIMELL 262
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + + PD AR+FI +R+G G MLD
Sbjct: 263 GAISRRAGRLVKGGE---------PDYEAAARLFITQWREGKLGLFMLD 302
>gi|261202068|ref|XP_002628248.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
gi|239590345|gb|EEQ72926.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 145 VPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPK 204
VPI+ ++ N+ + + ++VVG+PNVGKSS+INALR+ MKKGKA G
Sbjct: 117 VPIVKAIKRQPFNLDK-----LTGARILVVGMPNVGKSSLINALRNFVMKKGKAAKTGAD 171
Query: 205 AGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIA 262
GVTR V + +KI E+ +Y+ DTPG+ +P + + E ++LA C ++ ++ I +A
Sbjct: 172 PGVTRKVGTGIKILERARGSVYLHDTPGVFVPYMPDSESMLKLALCGCVKHTIIPTITLA 231
Query: 263 DYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTG 322
DY+L+ +N Y + EP++DI+ L K F + + D
Sbjct: 232 DYLLYQINLHKPRLYGKY---TEPTNDIIHFLKSFGAKAGCFAKGGTI---------DLE 279
Query: 323 EVARIFIEHFRKGSFGSVMLD 343
AR I +R+G FG+ ++D
Sbjct: 280 GAARKMIHMYREGKFGAFIMD 300
>gi|332835421|ref|XP_003312883.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Pan troglodytes]
gi|397490623|ref|XP_003816298.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Pan paniscus]
Length = 283
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LN+ +
Sbjct: 140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
YV + L D+I +L A+K K + + N + P+ AR F++ FR
Sbjct: 200 GYVQHYGLGSACDNIERVLKSVAVKLGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFR 259
Query: 334 KGSFGSVMLDRDFL 347
+G GSVMLD D L
Sbjct: 260 RGLLGSVMLDLDVL 273
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I + + E + VIFTNC ++ N V++ILP + + RYHR EV +M
Sbjct: 94 QKIMQHLEGEG--LKNVIFTNCVKDEN---VKQILPMVTELIGRSHRYHRREVSERPLMF 148
Query: 120 V 120
+
Sbjct: 149 L 149
>gi|239612055|gb|EEQ89042.1| mitochondrial GTPase [Ajellomyces dermatitidis ER-3]
gi|327352786|gb|EGE81643.1| mitochondrial GTPase [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 145 VPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPK 204
VPI+ ++ N+ + + ++VVG+PNVGKSS+INALR+ MKKGKA G
Sbjct: 117 VPIVKAIKRQPFNLDK-----LTGARILVVGMPNVGKSSLINALRNFVMKKGKAAKTGAD 171
Query: 205 AGVTRSVMSQVKISE--KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIA 262
GVTR V + +KI E + +Y+ DTPG+ +P + + E ++LA C ++ ++ I +A
Sbjct: 172 PGVTRKVGTGIKILERVRGSVYLHDTPGVFVPYMPDSESMLKLALCGCVKHTIIPTITLA 231
Query: 263 DYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTG 322
DY+L+ +N Y + EP++DI+ L K F + + D
Sbjct: 232 DYLLYQINLHKPRLYGKY---TEPTNDIIHFLKSFGAKAGCFAKGGTI---------DLE 279
Query: 323 EVARIFIEHFRKGSFGSVMLD 343
AR I +R+G FG+ ++D
Sbjct: 280 GAARKMIHMYREGKFGAFIMD 300
>gi|303320017|ref|XP_003070008.1| hypothetical protein CPC735_031990 [Coccidioides posadasii C735
delta SOWgp]
gi|240109694|gb|EER27863.1| hypothetical protein CPC735_031990 [Coccidioides posadasii C735
delta SOWgp]
gi|320034347|gb|EFW16292.1| mitochondrial GTPase [Coccidioides posadasii str. Silveira]
Length = 340
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 153/345 (44%), Gaps = 77/345 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ + L ++D VIE D R+PFT N L + VL KR +I +K +
Sbjct: 29 GLRRMRSMLDSIDHVIECRDFRIPFTSINPLFEH--------VLGDKKRTIIYTKRDLAG 80
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ K+ +Q I + R+ + T V V
Sbjct: 81 DRKL----------------------------AMQKIESQVLRWDKR-----TSKVFVVD 107
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
KSS+ + +K + +P+ D +T Y ++VVG+PNVGKSS
Sbjct: 108 KFSKSSM-----APFIKYLRTIPL------AQDQVTGYR--------MLVVGMPNVGKSS 148
Query: 184 IINALRSSHM---KKGKAVPVGPKAGVTRSVMSQVKI--SEKPLIYILDTPGISLPRIDN 238
IN LR M KA G + GVTR V S +K+ ++ +Y+ DTPG+ +P +
Sbjct: 149 FINYLRQQCMDLPSMSKAASTGDEPGVTRKVGSPIKVLNRKQCGMYVYDTPGVFVPYVAE 208
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E ++LA C ++ LV ++ I+DY+L+++N+ Y Y + EP++DI+ LL A
Sbjct: 209 PESMVKLATCGIIKRSLVSDLTISDYLLYHINKNKPYAYRKYC---EPTNDIMELLNAFA 265
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K + PD +R F +R+G F ++D
Sbjct: 266 LKSGCLAKG---------GVPDINMASRKFNHMWREGKFKYFVMD 301
>gi|194376020|dbj|BAG57354.1| unnamed protein product [Homo sapiens]
Length = 283
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++SE+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LN+ +
Sbjct: 140 EVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
YV + L D++ +L A+K K + + N + P+ AR F++ FR
Sbjct: 200 GYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLTGTGNVNVIQPNYPAAARDFLQTFR 259
Query: 334 KGSFGSVMLDRDFL 347
+G GSVMLD D L
Sbjct: 260 RGLLGSVMLDLDVL 273
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I + + E + VIFTNC ++ N V++I+P + + RYHR EV +M
Sbjct: 94 QKIMQHLEGEG--LKNVIFTNCVKDEN---VKQIIPMVTELIGRSHRYHRKEVSERPLMF 148
Query: 120 V 120
+
Sbjct: 149 L 149
>gi|449303274|gb|EMC99282.1| hypothetical protein BAUCODRAFT_120558 [Baudoinia compniacensis
UAMH 10762]
Length = 344
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP- 221
R + + +MV G+PNVGKSS++NALRS + KGKA G + G+TR + + VKI E
Sbjct: 126 RGSLTGSHLMVAGMPNVGKSSLLNALRSVSLHKGKAARTGAQPGITRKIGTSVKIIEPED 185
Query: 222 ---LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
+Y+LDTPG+ +P + + E ++LA C +++D+++ +ADY+L+++N Y
Sbjct: 186 GGGGVYLLDTPGVFIPYVPDAEAMLKLALCGSVKDNIIPPFTLADYLLYHVNLKSPELYS 245
Query: 279 DFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ P++D++ LL A K ++ + DT A ++ +R G G
Sbjct: 246 QYHT---PTNDVMELLDAVARKTGRLQKGGE---------SDTEGAALWMVQRWRSGHLG 293
Query: 339 SVMLD 343
+LD
Sbjct: 294 RFLLD 298
>gi|395842571|ref|XP_003794090.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Otolemur garnettii]
Length = 283
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
++ E+PL+++LDTPG+ PRI+++E G++LA C T+ DHLVGE +ADY+L+ LNR +
Sbjct: 140 EVCERPLMFLLDTPGVLSPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHQLF 199
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIK-KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFR 333
YV + L DDI +L A+K +K K + V + P+ AR F++ FR
Sbjct: 200 AYVQHYGLGGACDDIEHVLKSVAVKLRKTQKVKVLTGTGDVNIIQPNYPAAARDFLQTFR 259
Query: 334 KGSFGSVMLDRDFLE 348
+G G VMLD D L+
Sbjct: 260 RGQLGPVMLDLDVLQ 274
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD V+EVHD+R+P +GRN L Q+++ I+P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQNSLKRVDCVVEVHDARIPLSGRNPLFQETL-GIKPHLLVLNKMDLADLTEK 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC-RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I + + E + VIFTNC ++ N +++++P + + N RY R EV +M
Sbjct: 94 QKIMQHL--EGQGLKNVIFTNCVKDEN---IKQVIPMVTELIGNSCRYQRGEVCERPLMF 148
Query: 120 V 120
+
Sbjct: 149 L 149
>gi|294892063|ref|XP_002773876.1| protein phsophatase-2a, putative [Perkinsus marinus ATCC 50983]
gi|239879080|gb|EER05692.1| protein phsophatase-2a, putative [Perkinsus marinus ATCC 50983]
Length = 1110
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 60/333 (18%)
Query: 15 VDIVIEVHDSRMPFTGR----NHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
VD++IEV D+R+P T N L++S P ++VLNK DL+ +E + +
Sbjct: 386 VDVIIEVRDARIPLTSAQTELNTTLRESGIRKLPRLIVLNKCDLVTPSMARRAQEMI-EA 444
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
S+ V+ T+ KGV KI + ++ R+ +Y +++G+PN GKS+
Sbjct: 445 HSNTQCVLATSVMK---KGVVKIKEFM--LASREIRFKSLGIYG---LILGLPNTGKSTT 496
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
INAL+ + K TRY + S+I R+
Sbjct: 497 INALKRLSLLASK---------------TRYD-----------------SRDSMIGVSRA 524
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
V + P T ++ ++S P +Y++DTPG++ ++ N E ++LAA T
Sbjct: 525 Q-----ARVTMSPG---TTELIRAYQLSHNPTLYLVDTPGVTFHKVLNPERNLKLAAVGT 576
Query: 251 LQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDV 310
DH+ GE+ IADYIL+ LN ++YV+ L+ P++DI ++ ++ ++ D
Sbjct: 577 FPDHIFGELYIADYILWRLNNARLFQYVNVCALNAPTNDI-----RSVCREIAYQLCSDP 631
Query: 311 SSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+S M D AR F++ +R G G LD
Sbjct: 632 CRDSGAM--DVLSGARTFLKFYRNGLLGRYCLD 662
>gi|70929512|ref|XP_736805.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56511656|emb|CAH87394.1| hypothetical protein PC302442.00.0 [Plasmodium chabaudi chabaudi]
Length = 261
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 53/274 (19%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIE 64
I+ L D++IEV D+R+PFT N+ + ++ +N + +++LNK DLI SK +L
Sbjct: 34 IKNKLDICDVIIEVRDARVPFTSTNYFITDNLKKYKNTKKNIILLNKVDLI-SKELALKA 92
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+++ +E+++ ++ ++ N N ++ I ++ + + + M++G+PN
Sbjct: 93 QRLIEEKTNSICLLTSSKYNKNISKIRDICKEIK---------PKFKAFGLFCMLIGLPN 143
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
VGKSSIIN+ + I+ N+ +Y G N +
Sbjct: 144 VGKSSIINSFK-----------------EITYNLGKY-------------GYKNNKIAYE 173
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
+N K V AG T+ ++ Q K+S PL+Y +DTPGI LP++ + E ++
Sbjct: 174 VNR---------KKVKTNILAGTTK-LIEQYKVSNNPLLYFIDTPGIYLPKMADKEISLK 223
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
L+A + D+ ++ + DYILF LN+ NY YV
Sbjct: 224 LSAIGNVLDYKYNDMYVGDYILFILNKNKNYNYV 257
>gi|56759274|gb|AAW27777.1| SJCHGC02137 protein [Schistosoma japonicum]
Length = 392
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 156/380 (41%), Gaps = 92/380 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +G+ I+ + V++++EVHD+R+PF+GR LQ+ + RP +L++NK DL
Sbjct: 49 MRKGMDTIQSKMPLVNVIVEVHDARIPFSGRPEFLQK-FEMTRPTILLMNKIDL------ 101
Query: 61 SLIEEKVRKEQSHISEVIFTN---CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
E + +Q+++ ++ + R P EVY T
Sbjct: 102 ---AEPIGDQQAYMDRIVEESRIINRGP------------------------LEVYFT-- 132
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
L + +K ++ +L H++ N + + + TVMVVG+P
Sbjct: 133 ---------------QLNAPEKQKRTLKRLMSSLPHLATNSGHHVSSTI---TVMVVGIP 174
Query: 178 NVGKSSIINALRS-SHMKKGKAVPVGPKAGVTRSVM------------------SQVKIS 218
N GKS++INALRS + G A VG AG TRSV + VK
Sbjct: 175 NSGKSTLINALRSIGNGGSGGAAKVGRIAGQTRSVGQPIILYRGNSSHAQDDVNNGVKGF 234
Query: 219 EKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
I +LDTPGI PR L + L C + V + + DY+LF+ N YV
Sbjct: 235 VDYKIQVLDTPGILEPRTRTLSERLSLCVCGAVDYSSVQQELLVDYLLFWWNHRRRTEYV 294
Query: 279 DFFNLDEPSDDIVMLLAKAAIKKKWF--KRAFDVSSNSVR--------------MFPDTG 322
+L P+ D LL +K +F K N + + PD
Sbjct: 295 TLLDLPGPTTDTDELLINVCVKNNFFVTKSKATWQPNEIENLDELLKNNITRKMIAPDIR 354
Query: 323 EVARIFIEHFRKGSFGSVML 342
A + F KG FGSV
Sbjct: 355 RAASHILNLFNKGYFGSVTF 374
>gi|224086974|ref|XP_002308022.1| predicted protein [Populus trichocarpa]
gi|222853998|gb|EEE91545.1| predicted protein [Populus trichocarpa]
Length = 376
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 131/288 (45%), Gaps = 71/288 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV DSR+P + N LQ + R V+ LNK+DL N
Sbjct: 32 MAAATRAIRDRLKLADLVIEVRDSRIPLSSTNEDLQPQLAAKR-RVIALNKKDLANP--- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + +R F +C+ Q +P H
Sbjct: 88 NIMHKWIR---------YFDSCK-------QDCIPISAH--------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
KSS+ L K + + PTL VMVVGVPNVG
Sbjct: 111 -----SKSSVQKLLEVVEFKLKEVISREPTL------------------LVMVVGVPNVG 147
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN++ R + K K VGP GVT+ + + KI+ KP IY+LDTPG+ +P
Sbjct: 148 KSALINSIHQIALSRFAVQGKKKRATVGPLPGVTQDI-AGYKIAHKPSIYVLDTPGVLVP 206
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
I ++E G++L+ +++D +VGE IA Y+L LN G + +N
Sbjct: 207 SIPDIETGLKLSLAGSVKDSVVGEERIARYLLAVLNTRGTPLHWKHWN 254
>gi|121713144|ref|XP_001274183.1| mitochondrial GTPase (YlqF), putative [Aspergillus clavatus NRRL 1]
gi|119402336|gb|EAW12757.1| mitochondrial GTPase (YlqF), putative [Aspergillus clavatus NRRL 1]
Length = 359
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 15/176 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ ++KGKAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 157 VMVVGMPNVGKSTLINNLRNQGVRKGKAVQTGGQPGITRKIGTPVKIIEREDGAHVYVLD 216
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N +Y + +P+
Sbjct: 217 TPGVFMPYVPDAEKMLKLALCGCVKDSVISPVTLADYLLYHINLHNPEQYQRW---SQPT 273
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++I LL A + P+T A FI+ +R G G +LD
Sbjct: 274 NEISPLLNDFARHTGLLAKG---------GIPNTDLAALHFIQKWRSGDLGRFILD 320
>gi|85112121|ref|XP_964281.1| hypothetical protein NCU02123 [Neurospora crassa OR74A]
gi|28926057|gb|EAA35045.1| predicted protein [Neurospora crassa OR74A]
Length = 427
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 162/362 (44%), Gaps = 69/362 (19%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLI----N 56
L + + + NV ++IE D R+P N LL++S+ R ++V K DL N
Sbjct: 62 LNKMRQTISNVGLIIECRDFRVPICSWNPLLERSLAASAAGERSRIIVYTKHDLGPPSGN 121
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ IE +TN R N K + K L +YH+
Sbjct: 122 FSKETSIEG-------------YTNGRYQNGKDMVKTL----------KKYHKNSYTTKD 158
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT--EVYNTTVMVV 174
VM +G + G S +A + +H+ +++ R R + MVV
Sbjct: 159 VMFLGT-SAGARSRNDAPNND--------------KHLLESIKRIAREADSLTGMRAMVV 203
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEKPL------- 222
G+PN GKS+++N LR+ M KA G GVTR + + V+I ++ P
Sbjct: 204 GMPNSGKSTLLNRLRAKGMGLPKAAQTGATPGVTRKIGTPVRIIAGESADDPSSAGLGEG 263
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
++I+DTPG+ +P + + E +RLA ++D ++ + +ADY+L++LN Y F+
Sbjct: 264 VFIMDTPGVFIPYVSDPEDMLRLALVGCVKDGVIPSVTVADYLLYHLNLVDPKLYTRKFD 323
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
L +P++D+ L A + ++ +++ + A ++ +R+G G L
Sbjct: 324 LGKPTNDVHEFLRAVATRTGKLRKGSELNLEN---------AADWVVQAWRRGDLGRFAL 374
Query: 343 DR 344
+R
Sbjct: 375 ER 376
>gi|327293768|ref|XP_003231580.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
gi|326466208|gb|EGD91661.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892]
Length = 352
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 79/347 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESL 62
GL+ ++ L +VD VIE D R+P T N L ++++ + +V KRDL +SK ES
Sbjct: 36 GLEKMKAMLDSVDHVIECRDFRVPATSINPLFEEALGG-KSRTIVYTKRDLGADSKPES- 93
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
R ++ IS R E +T V
Sbjct: 94 -----RMKEKLIS---------------------------------RWEQKSTKVFFAS- 114
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+L++S K + LP + V +++VG+PNVGKS
Sbjct: 115 ---------RSLKNSVTPLAKYIKYLPMAAN-----------SVIGYRMLIVGMPNVGKS 154
Query: 183 SIINALRS----SHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLPRI 236
++IN LRS +++K V G G+TR + + +K+ EK IY+ DTPG+ +P +
Sbjct: 155 TLINKLRSMTNIKNVRKSAVVRTGADPGITRKIGTPIKLFEKDDIGIYVYDTPGVFVPYV 214
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
N + +++A C ++D LV I +ADY+LF +N+ N + P++DI+ LL
Sbjct: 215 SNPDSMLKMALCGIIKDSLVPIITLADYLLFQMNQ--NLLMDMYGAYCAPTNDIMELLGA 272
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ K + + PD AR+FI +R+G G MLD
Sbjct: 273 ISRKAGRLVKGGE---------PDYEAAARLFITQWREGKLGLFMLD 310
>gi|358368568|dbj|GAA85184.1| mitochondrial GTPase [Aspergillus kawachii IFO 4308]
Length = 336
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 111/196 (56%), Gaps = 17/196 (8%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
L+H+ D+ ++ VM+VG+PNVGKS++IN LR+ + K KAV G + G+TR
Sbjct: 118 LKHLRDDAE--GPDKLVRCRVMIVGMPNVGKSTLINHLRNQGVGKAKAVRTGGQPGITRK 175
Query: 211 VMSQVKISEKPL---IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+ + VKI E+ +Y+LDTPG+ +P + + E ++LA C ++D ++ + +ADY+L+
Sbjct: 176 IGTPVKIIEREGGSHVYVLDTPGVFMPYVPDAENMLKLALCGCVKDSVISPVTLADYLLY 235
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
++N Y + EP+++IV LL A + A ++ + P+T A
Sbjct: 236 HINLNDAEVYKRW---SEPTNEIVPLLNNFA------RHAGLLAKGGI---PNTDLAALH 283
Query: 328 FIEHFRKGSFGSVMLD 343
FI+ +R G G MLD
Sbjct: 284 FIQKWRAGDLGRFMLD 299
>gi|406863867|gb|EKD16914.1| hypothetical protein MBM_05383 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 833
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 20/191 (10%)
Query: 161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK 220
+ R + + ++VVG+PNVGKSS++NALR + + K KA G + GVTR + S VKI EK
Sbjct: 206 WQRQSLLGSRILVVGMPNVGKSSLLNALRMAGVHKAKAAITGAQPGVTRKIASGVKIVEK 265
Query: 221 ------PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT-- 272
+Y++DTPG+ +P + N E M+LA +++D ++ + + DY+L+++N+
Sbjct: 266 DEDKGTEGVYLVDTPGVFVPFVPNAEAMMKLALVGSVKDTIISPVTLCDYLLYHINKQQG 325
Query: 273 GNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHF 332
G Y D+ P+++I LL K + PD A I+ +
Sbjct: 326 GETWYGDYCT---PTNEIEELLEGLCRKTGRLGKG---------GVPDIEAAALWMIQRW 373
Query: 333 RKGSFGSVMLD 343
R+GS G LD
Sbjct: 374 RQGSLGHFTLD 384
>gi|296414191|ref|XP_002836786.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295631625|emb|CAZ80977.1| unnamed protein product [Tuber melanosporum]
Length = 362
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 74/341 (21%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL +++ + +VD++IE D R+P + RN + ++++Q + ++V KRDL + +
Sbjct: 50 GLDRMKQLVSSVDLIIECRDYRVPLSSRNPMFEEALQE-KERLIVYTKRDLAAEE----L 104
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+ KV K+ F PN + +P QH+ V+V+ P
Sbjct: 105 DLKVCKK--------FPLTATPN----RGPIPC-QHMH---------------VLVLNAP 136
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
SS G A +DN + ++VVG+PNVGKS+
Sbjct: 137 ------------SSQKLVGTAT--------AADN--------TIGSRMLVVGMPNVGKST 168
Query: 184 IINALRSSHMKKGK-AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
+INA+R K A G + GVTR + +KIS+ PLIY++D+PG+ +P + N +
Sbjct: 169 LINAMRRVGTGNSKKAAITGGQPGVTRKISMTIKISDDPLIYLIDSPGVFVPYMPNPQTM 228
Query: 243 MRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302
+ LA ++D L+ +ADY+LF+LN Y + P++DIV LL A K
Sbjct: 229 LSLALVGCVKDSLLNPTALADYLLFHLNLRDPSLYSGYC---PPTNDIVELLTATA---K 282
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R + PD A ++ +R + G +LD
Sbjct: 283 ATGRLLKGGT------PDFDATAYWLVQRYRASALGKFILD 317
>gi|405119273|gb|AFR94046.1| mitochondrial GTPase 1 [Cryptococcus neoformans var. grubii H99]
Length = 447
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 69/363 (19%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L+++ L+N+++VIE D+R+P T +I P+ + +R +K E
Sbjct: 1 MARSLRELPPLLENINLVIEARDARLPLT-----------SINPIFDGVLRRWKARAKVE 49
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E V + ++E F P+ G L I +TR + N ++
Sbjct: 50 GERERIVVYTKRALAEARFEGVSYPSQTGAIAFNDILGAILKPLTRAF---MQNANQKIM 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I + LR + K+ P PT +++V+G+PNVG
Sbjct: 107 FADTRKNPDISHILRYAVDLAQKSAPFSPTY------------------SILVLGMPNVG 148
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP----RI 236
KSS++NALR ++KGKA G AGVT+ + V+I E+P +Y+ DTPG+ +P
Sbjct: 149 KSSLLNALRRVGLRKGKAFQTGALAGVTKKLTGTVRIYEEPQVYVYDTPGVMMPYLGKGE 208
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD------------ 284
+ E G++LA A +++ L I+DY+L+ LNR RYV +L
Sbjct: 209 EGGEKGLKLALTAGIKEDLFELDAISDYLLWKLNR----RYVSEPSLPSYLSSLPLPPSF 264
Query: 285 EPSDDIVMLLA----KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSV 340
EP+D + LL+ + A K+K + D V R F+ +R+G G
Sbjct: 265 EPTDHLPTLLSALSNRLAAKQKGGEE-------------DWESVMRWFVRAWREGKMGEW 311
Query: 341 MLD 343
LD
Sbjct: 312 TLD 314
>gi|145237832|ref|XP_001391563.1| hypothetical protein ANI_1_1750064 [Aspergillus niger CBS 513.88]
gi|134076040|emb|CAK39399.1| unnamed protein product [Aspergillus niger]
gi|350635626|gb|EHA23987.1| hypothetical protein ASPNIDRAFT_39964 [Aspergillus niger ATCC 1015]
Length = 336
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 17/196 (8%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
L+H+ D+ + + VM+VG+PNVGKS++IN LR+ + K KAV G + G+TR
Sbjct: 118 LKHLRDDAEGPDK--LVGCRVMIVGMPNVGKSTLINHLRNQGVGKAKAVRTGGQPGITRK 175
Query: 211 VMSQVKISEKPL---IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+ + VKI E+ +Y+LDTPG+ +P + + E ++LA C ++D ++ + +ADY+L+
Sbjct: 176 IGTPVKIIEREGGSHVYVLDTPGVFMPYVPDAENMLKLALCGCVKDSVISPVTLADYLLY 235
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
++N Y + EP+++I+ LL A + A ++ + P+T A
Sbjct: 236 HINLNDAEVYKRW---SEPTNEILPLLNNFA------RHAGLLAKGGI---PNTDLAALH 283
Query: 328 FIEHFRKGSFGSVMLD 343
FI+ +R G G MLD
Sbjct: 284 FIQKWRAGDLGRFMLD 299
>gi|430812733|emb|CCJ29854.1| unnamed protein product [Pneumocystis jirovecii]
Length = 262
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 148/343 (43%), Gaps = 87/343 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M GLKDI+ L N+D+VIE DSR+P + +N L+++ ++N +++ NK DL + ++
Sbjct: 1 MYSGLKDIKSLLNNIDLVIETRDSRVPVSSQNKLVEEIIKNKE-KIIIFNKHDLSGTYYD 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ++ + I + N +MV+
Sbjct: 60 KVFQDFYKDGILCIKALELNQASGMN------------------------------IMVL 89
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS+++N+ R M +S N R R
Sbjct: 90 GMPNVGKSTLLNSFRCIGM--------------LSKNTGRKTR----------------- 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
K G + G+T+ V ++KI E PL+Y +DTPGI +P I +
Sbjct: 119 ----------------KVAKTGAQPGITKKVTQKIKIMENPLVYCMDTPGIMIPSIKDPI 162
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++LA +++D+++ + +ADY+LF LN Y+ F + +P++++ LL AI
Sbjct: 163 TFIKLALVGSIKDNILDNVILADYLLFRLNLIDPKLYLIPFKMSQPTNNVEELLNAIAIG 222
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ P+ A FI +R G+ G +LD
Sbjct: 223 TGRLQKG---------GIPNIHAAAAFFINKYRLGNLGKFILD 256
>gi|449463330|ref|XP_004149387.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
gi|449503786|ref|XP_004162176.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
Length = 375
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 71/276 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV DSR+P + N LQ + + R V+ LNK+DL N
Sbjct: 31 MAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKR-RVIALNKKDLANP--- 86
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + V F +C N +C +P H
Sbjct: 87 NIMNKWVN---------FFDSC-NQDC------VPINAH--------------------- 109
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
KSS+ L K +A+ PTL VMVVGVPNVG
Sbjct: 110 -----SKSSVRKLLELVEFKLKEAISREPTL------------------LVMVVGVPNVG 146
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN++ R +K K VGP GVT+ + + KI+ +P IY+LDTPG+ +P
Sbjct: 147 KSALINSIHQIASERFPVQEKRKRATVGPLPGVTQDI-AGYKIAHQPSIYVLDTPGVLVP 205
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
I ++E G++LA +++D +VGE IA Y+L LN
Sbjct: 206 SIQDIETGLKLALAGSVKDAVVGEERIAQYLLAVLN 241
>gi|67537076|ref|XP_662312.1| hypothetical protein AN4708.2 [Aspergillus nidulans FGSC A4]
gi|40741560|gb|EAA60750.1| hypothetical protein AN4708.2 [Aspergillus nidulans FGSC A4]
gi|259482454|tpe|CBF76953.1| TPA: mitochondrial GTPase (YlqF), putative (AFU_orthologue;
AFUA_5G08680) [Aspergillus nidulans FGSC A4]
Length = 354
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 66/344 (19%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL + L ++D VIE D+R+PFT N + ++++ R ++ V KRD L
Sbjct: 29 GLNKMRNMLSSIDYVIECRDTRVPFTSVNPMFEEALGKTRRLI-VYTKRD--------LG 79
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD-NMTRYHRTEVYNTTVMVVGV 122
E +EQ + + I + R G + H+ + +R + NT +
Sbjct: 80 SEAGSREQKSLEKQIRSFNR-----GTPVFFVSPHHLDPRSKSRTNNRPDVNTIL----- 129
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+H+++ P + VMVVG+PNVGKS
Sbjct: 130 --------------THLREDAQGP-----------------DRLVGCRVMVVGMPNVGKS 158
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILDTPGISLPRIDNL 239
++IN LR+ + K KAV G + G+TR + + VKI E+ +Y+LDTPG+ +P + +
Sbjct: 159 TLINNLRNRGVGKAKAVHTGDQPGITRKIGTPVKIIERDNGAHVYVLDTPGVFMPYVPDA 218
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E ++LA C ++D ++ + +ADY+L+++N Y + P++++ LL
Sbjct: 219 ENMLKLALCGCVKDSVISPVTLADYLLYHINLHDPTVYQRW---SLPTNEVHPLLDS--- 272
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
F R+ + + P+ A FI+ +R G G +LD
Sbjct: 273 ----FARSTGLLAKG--GIPNMDLAALHFIQKWRGGGLGRFILD 310
>gi|221060002|ref|XP_002260646.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193810720|emb|CAQ42618.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 422
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 150/332 (45%), Gaps = 72/332 (21%)
Query: 20 EVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSK----HESLIEEKVRKEQS 72
EV D+R+PFT N + S++ + +++LNK DLI K +S+IEEK K
Sbjct: 119 EVRDARLPFTSTNDFIMDSIEKKNKDKQRIIILNKADLIPKKVALSAKSIIEEKT-KHMC 177
Query: 73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 132
++ F K + KI + + M R+ ++VG+PNVGKSSIIN
Sbjct: 178 LLTSAKFN-------KSISKI----RDLCREMKPQFRS--LGLFTLLVGLPNVGKSSIIN 224
Query: 133 ALRSSHMKKGKAVPILPTLQHISDNMTRY-HRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
+ + ++ N+ +Y H+ N + K+++I
Sbjct: 225 SFKD-----------------VTHNLAKYGHK----NNKIAFEVNRKRAKTNVI------ 257
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
AG T+ V K+S PL+Y +DTPGI LP++++ E ++L A
Sbjct: 258 -------------AGTTQMV-DTYKVSNNPLLYFIDTPGIYLPKMEDKEISLKLCAIGNA 303
Query: 252 QDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVS 311
++ + + DYIL+ LN+ N+ YV L+EP++DI + A K ++
Sbjct: 304 LEYKYDHMYVGDYILYTLNKRMNFNYVKVIGLEEPTNDIRFVCNVIATK-------LNLC 356
Query: 312 SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
N + D R FI+ FR G FG + LD
Sbjct: 357 RNYKYL--DMNGGCRYFIDMFRLGLFGRICLD 386
>gi|336463374|gb|EGO51614.1| hypothetical protein NEUTE1DRAFT_89174 [Neurospora tetrasperma FGSC
2508]
Length = 427
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 69/362 (19%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLI----N 56
L + + + NV ++IE D R+P N LL++S+ R ++V K DL N
Sbjct: 62 LNKMRQTISNVGLIIECRDFRVPICSWNPLLERSLAASAAGERSRIIVYTKHDLGPPSGN 121
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ IE +TN R + K + K L +YH+
Sbjct: 122 FSKETSIEG-------------YTNGRYQSGKDMVKTL----------KKYHKNSYTTKD 158
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT--EVYNTTVMVV 174
VM +G + G S +A + +H+ +++ R R + MVV
Sbjct: 159 VMFLGT-SAGARSRNDAPNND--------------KHLLESIKRIAREADSLTGMRAMVV 203
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEKPL------- 222
G+PN GKS+++N LR+ M KA G GVTR + + V+I ++ P
Sbjct: 204 GMPNSGKSTLLNRLRAKGMGLPKAAQTGATPGVTRKIGTPVRIIAGESADDPSSAGLGEG 263
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
++I+DTPG+ +P + + E +RLA ++D ++ + +ADY+L++LN Y F+
Sbjct: 264 VFIMDTPGVFIPYVSDPEDMLRLALVGCVKDGVIPSVTVADYLLYHLNLVDPKLYTRKFD 323
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
L +P++D+ L A + ++ +++ + A ++ +R+G G L
Sbjct: 324 LGKPTNDVHEFLRAVATRTGKLRKGSELNLEN---------AADWVVQAWRRGDLGRFAL 374
Query: 343 DR 344
+R
Sbjct: 375 ER 376
>gi|350297412|gb|EGZ78389.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 687
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 69/362 (19%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLI----N 56
L + + + NV ++IE D R+P N LL++S+ R ++V K DL N
Sbjct: 322 LNKMRQTISNVGLIIECRDFRVPICSWNPLLERSLAASAAGERSRIIVYTKHDLGPPSGN 381
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ IE +TN R + K + K L +YH+
Sbjct: 382 FSKETSIEG-------------YTNGRYQSGKDMVKTL----------KKYHKNSYTTKD 418
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT--EVYNTTVMVV 174
VM +G + G S +A + +H+ +++ R R + MVV
Sbjct: 419 VMFLGT-SAGARSRNDAPNND--------------KHLLESIKRIAREADSLTGMRAMVV 463
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEKPL------- 222
G+PN GKS+++N LR+ M KA G GVTR + + V+I ++ P
Sbjct: 464 GMPNSGKSTLLNRLRAKGMGLPKAAQTGATPGVTRKIGTPVRIIAGESADDPSSAGLGEG 523
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
++I+DTPG+ +P + + E +RLA ++D ++ + +ADY+L++LN Y F+
Sbjct: 524 VFIMDTPGVFIPYVSDPEDMLRLALVGCVKDGVIPSVTVADYLLYHLNLVDPKLYTRKFD 583
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
L +P++D+ L A + ++ +++ + A ++ +R+G G L
Sbjct: 584 LGKPTNDVHEFLRAVATRTGKLRKGSELNLEN---------AADWVVQAWRRGDLGRFAL 634
Query: 343 DR 344
+R
Sbjct: 635 ER 636
>gi|58260806|ref|XP_567813.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117243|ref|XP_772848.1| hypothetical protein CNBK2190 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255466|gb|EAL18201.1| hypothetical protein CNBK2190 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229894|gb|AAW46296.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 448
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 108/372 (29%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLL---------QQSVQNIRPMVLVLNK 51
M R L+++ L+N+++VIE D+R+P T N + + V+ R ++V K
Sbjct: 23 MARSLRELPPLLENINLVIEARDARLPLTSINPIFDGVLRRWKARAKVEGERERIVVYTK 82
Query: 52 RDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTE 111
RDL ++ E + + S +++F + R
Sbjct: 83 RDLAETRFEGPLARAFVQNGSQ--KIMFADTRK--------------------------- 113
Query: 112 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV 171
S + + LR + K+VP PT ++
Sbjct: 114 ---------------NSDVSHILRYAVDLAQKSVPFSPTY------------------SI 140
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
+V+G+PNVGKSS++NALR ++KGKA G AGVT+ + V+I E+P +Y+ DTPG+
Sbjct: 141 LVLGMPNVGKSSLLNALRRVGLRKGKAFQTGALAGVTKKLTGTVRIYEEPQVYVYDTPGV 200
Query: 232 SLP----RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD--- 284
+P + E G++LA A +++ L I+DY+L+ LNR RYV +L
Sbjct: 201 MMPYLGKGEEGGEKGLKLALTAGIKEDLFELDAISDYLLWKLNR----RYVSEPSLPSYL 256
Query: 285 ---------EPSDDIVMLLA----KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEH 331
EP+D + LL+ + A K+K + ++ V R F+
Sbjct: 257 SSLPLPPSFEPTDHLPTLLSALSNRLAAKQKGGEEDWE-------------SVMRWFVRA 303
Query: 332 FRKGSFGSVMLD 343
+R+G G LD
Sbjct: 304 WREGKMGEWTLD 315
>gi|356572022|ref|XP_003554169.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 130/288 (45%), Gaps = 71/288 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+PF+ N LQ + R V+ LNK+DL N
Sbjct: 33 MAAATRAIRHRLKLADLVIEVRDARIPFSSANADLQPHLSAKR-RVVALNKKDLANPN-- 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F +C N NC + N M
Sbjct: 90 ------IMHKWTHY----FESC-NQNCVAI-----------------------NAHSM-- 113
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
SS+ L K + + PTL VMVVGVPNVG
Sbjct: 114 -------SSVKKLLEVVEFKLKEVICREPTL------------------LVMVVGVPNVG 148
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN++ R +K K VGP GVT+ + + KI+ KP IY+LDTPG+ +P
Sbjct: 149 KSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVTQDI-AGFKIAHKPSIYVLDTPGVLVP 207
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
I ++E G++LA +++D +VGE IA Y+L L+ G + + N
Sbjct: 208 SISDIETGLKLALAESVKDSVVGEERIAQYLLAVLDTRGTPLHWNHLN 255
>gi|242790766|ref|XP_002481621.1| mitochondrial GTPase (YlqF), putative [Talaromyces stipitatus ATCC
10500]
gi|218718209|gb|EED17629.1| mitochondrial GTPase (YlqF), putative [Talaromyces stipitatus ATCC
10500]
Length = 357
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 112/202 (55%), Gaps = 17/202 (8%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
L+H+ ++ + HR + MVVG+PN+GKSS+IN LR+ + K KA+ G GVTR
Sbjct: 117 LRHLKNDKSTAHR--IAACRAMVVGMPNIGKSSLINTLRNQGVHKAKALKTGEHPGVTRK 174
Query: 211 VMSQVKISEK---PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+ + VK+ E+ +Y+LDTPG+ +P + + E ++LA C ++D ++ + +ADY+L+
Sbjct: 175 IGTPVKVVERQDGSSVYVLDTPGVFVPYMPDAERMLKLALCGCVKDTIIPPVTLADYLLY 234
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
++N Y + P+++I+ LL + +++ V S P+ + A
Sbjct: 235 HINLINPEIYGRW---SGPTNEIMPLLTRFSLQ---------VGLLSKGAVPNIEQAAIN 282
Query: 328 FIEHFRKGSFGSVMLDRDFLEL 349
F++ +R G G +LD EL
Sbjct: 283 FVQKWRSGDLGKFVLDDIRAEL 304
>gi|19112864|ref|NP_596072.1| mitochondrial GTPase involved in translation Mtg1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74626913|sp|O74776.1|MTG1_SCHPO RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|3738207|emb|CAA21262.1| mitochondrial GTPase involved in translation Mtg1 (predicted)
[Schizosaccharomyces pombe]
Length = 328
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 155/344 (45%), Gaps = 59/344 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK ++ + DI +EV D+R+P T RN++++ + N + ++V NK DL ++ H
Sbjct: 22 MNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFL-NKKNRIIVYNKCDLADTFH- 79
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KV K + +Q + Q++ + T + +
Sbjct: 80 --TKAKVSKHR------------------IQNLAQQFQNVE---CWFKETSTPEKSAFIT 116
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
P V K+ A +L ++ + D + R VY VG+PN G
Sbjct: 117 --PYVSKAPYF------------AKELLRLIRTLVDQASANGRVYVY-----FVGMPNTG 157
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSI+N+LR+ ++K K+ VG GVT+ + V++ +Y+LDTPGI P I E
Sbjct: 158 KSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPE 217
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++L+ +++ +V + + DY+LF+LNR Y + P++D+ L A K
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKW---SLPTNDVDEFLQNTAYK 274
Query: 301 -KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K K F D V+ I+ +R G G LD
Sbjct: 275 ARKLTKGGF-----------DENFVSNYVIQQYRIGRLGRFQLD 307
>gi|402219071|gb|EJT99146.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 384
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 150/364 (41%), Gaps = 99/364 (27%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI--------RPMVLVLNKRDLINSK 58
+ K L IV+EV D+R+P T N + +++ + +++ KRDL +
Sbjct: 29 SLPKLLSTTSIVLEVRDARLPLTSVNPAFETALRRYWASAELEGKERIIIYAKRDLAERR 88
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+E ++ +K F N R VM
Sbjct: 89 YEEPLKTMFKK---------FANQR---------------------------------VM 106
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH-RTEVYNTTVMVVGVP 177
N G+ +G +L + +I++N H R EV +VVG+P
Sbjct: 107 FA---NTGQ-------------RGDVRRVLDAITNIAENNKETHPRAEV-----LVVGMP 145
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS++NALRSS ++KGKA AG+TR VKI E+P IY+ DTPG+ +P +
Sbjct: 146 NVGKSSLLNALRSSGIQKGKAFRTSATAGLTRKFTGHVKIHEEPDIYVSDTPGVMVPYLG 205
Query: 238 NLEC----GMRLAACATLQDHLVGEINIADYILFYLNRTGN--------YRYV------D 279
E GM+LA A +++ L +A Y+L L N YR +
Sbjct: 206 RGEAGSEKGMKLAVTAGIKESLYDPELLASYLLHILPIKANMPFDLPHPYRGLLPEYGGS 265
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
F NL PS D LL A +R V FP+T A ++ FRKG G
Sbjct: 266 FANLVPPSHDQTPLLEALA------QRLGRVRKGG---FPNTNLAAIWLLDWFRKGGAGR 316
Query: 340 VMLD 343
D
Sbjct: 317 WTSD 320
>gi|356504771|ref|XP_003521168.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 126/288 (43%), Gaps = 71/288 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + R V+ LNK+DL N
Sbjct: 33 MAAATRAIRHRLKLADLVIEVRDARIPLSSANADLQPHLSAKR-RVVALNKKDLANPN-- 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F C N NC V
Sbjct: 90 ------IMHKWTHY----FETC-NQNC--------------------------------V 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ KSS+ L K + + PTL VMVVGVPNVG
Sbjct: 107 AINAHSKSSVKKLLEVVEFKLKEVICKEPTL------------------LVMVVGVPNVG 148
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN++ R +K K VGP GVT+ + + KI+ KP IY+LDTPG+ +P
Sbjct: 149 KSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVTQDI-AGFKIAHKPSIYVLDTPGVLVP 207
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
I ++E G++LA +++D +VGE I Y+L LN G + N
Sbjct: 208 SISDIETGLKLALAGSVKDSVVGEERIVQYLLAVLNTRGTPLHWKHLN 255
>gi|391872065|gb|EIT81208.1| conserved ATP/GTP binding protein [Aspergillus oryzae 3.042]
Length = 337
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 15/176 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ + K KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 136 VMVVGMPNVGKSTLINNLRNQGVHKAKAVQTGGQPGITRKIGTPVKIIERENGSHVYVLD 195
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N Y + P+
Sbjct: 196 TPGVFMPYVPDAENMLKLALCGCVKDSVISPVTLADYLLYHINLHDTQVYERW---SPPT 252
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++I+ LL F R V + P+T A FI+ +R G G +LD
Sbjct: 253 NEIMPLLND-------FARHTGVLAKG--GIPNTDLAALHFIQKWRAGGLGKFILD 299
>gi|15615039|ref|NP_243342.1| hypothetical protein BH2476 [Bacillus halodurans C-125]
gi|4514314|dbj|BAA75361.1| YlqF [Bacillus halodurans]
gi|10175096|dbj|BAB06195.1| BH2476 [Bacillus halodurans C-125]
Length = 284
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 160/343 (46%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +D+VIE+ D+R+P + RN ++ + V + +P +++LNK DL +
Sbjct: 10 MAKARREVTEKLKLIDVVIELLDARVPLSSRNPMMDEIVAH-KPRLVLLNKDDLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S +E R + + V+ N + +GV +I P Q ++
Sbjct: 66 SKTKEWTRFFEEGGATVLPINAQT--GQGVSRISPACQTLA------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++I R+ MK +A+ M++G+PNVG
Sbjct: 105 -------QALIEKQRAKGMKP-RAI------------------------RAMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L S + K VG + G+T+ +K+ ++ + +LDTPGI P+ D+
Sbjct: 133 KSTLINRLASKRIAK-----VGDRPGITKQ-QQWIKVGKE--LELLDTPGILWPKFDDQA 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA ++D L+ ++A ++L Y+ R +D + L+E +D V L AI
Sbjct: 185 TGFRLAATGAIKDELLDFQDVALFVLRYMREMYPDRLMDRYKLNELPEDGVTLF--DAIG 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K KR +S + D + A + + R G+ G + L+
Sbjct: 243 K---KRGHLLSGGYI----DYDKTAEMILRELRAGTLGRITLE 278
>gi|119479577|ref|XP_001259817.1| mitochondrial GTPase (YlqF), putative [Neosartorya fischeri NRRL
181]
gi|119407971|gb|EAW17920.1| mitochondrial GTPase (YlqF), putative [Neosartorya fischeri NRRL
181]
Length = 280
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 100/178 (56%), Gaps = 19/178 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ ++K KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 78 VMVVGMPNVGKSTLINNLRNQGVRKAKAVQTGGQPGITRKIGTPVKIIERDNGAHVYVLD 137
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDE 285
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N G Y+ +
Sbjct: 138 TPGVFMPYVPDAEKMLKLALCGCVKDSVISPVTLADYLLYHINLHNPGQYQ-----RWSQ 192
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P+++I LL A + + P+ A FI+ +R G G +LD
Sbjct: 193 PTNEISPLLDSFARQTGLLAKGG---------IPNIDLAALHFIQKWRSGELGRFILD 241
>gi|317151567|ref|XP_001824749.2| hypothetical protein AOR_1_758084 [Aspergillus oryzae RIB40]
Length = 337
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 15/176 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ + K KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 136 VMVVGMPNVGKSTLINNLRNQGVHKAKAVQTGGQPGITRKIGTPVKIIERENGSHVYVLD 195
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N Y + P+
Sbjct: 196 TPGVFMPYVPDAENMLKLALCGCVKDSVISPVTLADYLLYHINLHDTQVYERW---SPPT 252
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++I+ LL A + P+T A FI+ +R G G +LD
Sbjct: 253 NEIMPLLNDFARHTGLLAKG---------GIPNTDLAALHFIQKWRAGGLGKFILD 299
>gi|83773489|dbj|BAE63616.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 371
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 15/176 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ + K KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 170 VMVVGMPNVGKSTLINNLRNQGVHKAKAVQTGGQPGITRKIGTPVKIIERENGSHVYVLD 229
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N Y + P+
Sbjct: 230 TPGVFMPYVPDAENMLKLALCGCVKDSVISPVTLADYLLYHINLHDTQVYERW---SPPT 286
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++I+ LL A + P+T A FI+ +R G G +LD
Sbjct: 287 NEIMPLLNDFARHTGLLAKGG---------IPNTDLAALHFIQKWRAGGLGKFILD 333
>gi|70998074|ref|XP_753769.1| mitochondrial GTPase (YlqF) [Aspergillus fumigatus Af293]
gi|66851405|gb|EAL91731.1| mitochondrial GTPase (YlqF), putative [Aspergillus fumigatus Af293]
gi|159126495|gb|EDP51611.1| mitochondrial GTPase (YlqF), putative [Aspergillus fumigatus A1163]
Length = 338
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 15/176 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ +K+ KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 136 VMVVGMPNVGKSTLINNLRNQGVKRAKAVQTGGQPGITRKIGTPVKIIERDNGAHVYVLD 195
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA C ++D ++ + +ADY+L+++N +Y + +P+
Sbjct: 196 TPGVFMPYVPDAEKMLKLALCGCVKDSVISPVTLADYLLYHINLHNPGQYERW---SQPT 252
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++I LL A + + P+ A I+ +R G G MLD
Sbjct: 253 NEISPLLDSFARQTGLLAKGG---------IPNIDLAALHLIQKWRSGELGRFMLD 299
>gi|357509687|ref|XP_003625132.1| Mitochondrial GTPase [Medicago truncatula]
gi|355500147|gb|AES81350.1| Mitochondrial GTPase [Medicago truncatula]
Length = 373
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 137/303 (45%), Gaps = 79/303 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + +++ V+ LNK+DL N
Sbjct: 31 MAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHL-SLKRRVVALNKKDLANP--- 86
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + V F +C+ Q +P H
Sbjct: 87 NIMHKWVN---------YFESCK-------QDCIPINAH--------------------- 109
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
KSS+ L +K +A+ PTL VMVVGVPNVG
Sbjct: 110 -----SKSSVTKLLELVELKLKEAISKEPTL------------------LVMVVGVPNVG 146
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS +IN++ R +K K VGP GVT+ + + KI+ KP IY+LDTPG+ +P
Sbjct: 147 KSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDI-AGFKIANKPSIYVLDTPGVLVP 205
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG--------NYRYVDFFNLDEP 286
I ++E G++LA +++D +VGE IA Y+L LN G N R VD +
Sbjct: 206 SISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRGTPLHWKHINNRRVDGITYEAK 265
Query: 287 SDD 289
+D
Sbjct: 266 END 268
>gi|403221616|dbj|BAM39748.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 392
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 147/357 (41%), Gaps = 91/357 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL--INSK 58
M G ++ K VD ++EV D+R P T N + + P +++LNK DL ++S
Sbjct: 80 MASGKLNLSNRKKAVDCLLEVRDARAPLTSSNFSITEQYPAHLPRLVILNKSDLAPVDSL 139
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
L ++ S+I + + +N NP R+ + + +M
Sbjct: 140 KVVLCSTLTLRKLSNIKKFVVSNV-NP--------------------RFPKLGFW---LM 175
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
VVG+PNVGKSS+I +L+ + ++H
Sbjct: 176 VVGLPNVGKSSLIKSLKHHSF------------------VEQWH---------------- 201
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP---- 234
S + M++ K + K G T+ V I KP IY DTPGI LP
Sbjct: 202 ----SKVPLSEQETMRRTKP-KIENKPGSTKMV-DFFNICLKPKIYCFDTPGIMLPKYLM 255
Query: 235 ------RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD 288
R+ N E ++LAA + + + GE +ADYIL+ LN+ + YV L P D
Sbjct: 256 HTILTYRMSNPEINLKLAALGCVDNTVAGEDYVADYILYRLNKANLFTYVKALELPGPCD 315
Query: 289 DI--VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
DI + L I+KKW NSV D +IF FR G FG + LD
Sbjct: 316 DISKIALHIANLIEKKW---------NSV----DPCNCYKIFTNQFRMGFFGKICLD 359
>gi|255585496|ref|XP_002533440.1| GTP binding protein, putative [Ricinus communis]
gi|223526714|gb|EEF28947.1| GTP binding protein, putative [Ricinus communis]
Length = 375
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 130/288 (45%), Gaps = 71/288 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV DSR+P + N+ LQ + + R V+ LNK+D
Sbjct: 32 MAAATRAIRSRLKLADLVIEVRDSRIPLSSANNDLQPHLNSKR-RVIALNKKD------- 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L V + H F +C+ Q +P H
Sbjct: 84 -LANANVMHKWVHY----FNSCK-------QDSIPVNSH--------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
KSS++ L +K + + PTL VMVVGVPNVG
Sbjct: 111 -----SKSSVMKLLELVELKLKEVISREPTL------------------LVMVVGVPNVG 147
Query: 181 KSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN++ R +K K VGP GVT+ + + KI+ +P IY+LDTPG+ +P
Sbjct: 148 KSALINSIHQIASSRFPVQEKKKRATVGPLPGVTQDI-AGYKIAHQPSIYVLDTPGVLVP 206
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
I ++E G++LA +++D VGE IA Y+L LN G + +N
Sbjct: 207 SIPDIETGLKLALAGSVKDSAVGEERIAQYLLAVLNTRGTPLHWRHWN 254
>gi|321263973|ref|XP_003196704.1| hypothetical protein CGB_K2670W [Cryptococcus gattii WM276]
gi|317463181|gb|ADV24917.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 448
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 160/372 (43%), Gaps = 108/372 (29%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLL---------QQSVQNIRPMVLVLNK 51
M R L+++ L+N+++VIE D+R+P T N + + ++ R ++V K
Sbjct: 23 MARSLRELPPLLENINLVIEARDARLPLTSINPIFDGVLRRWKARAKIEGERERIVVYTK 82
Query: 52 RDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTE 111
RDL ++ E + + + S +++F + R P + HI
Sbjct: 83 RDLAETRFEGPLTKAFMRNGSQ--KIMFADTRK---------NPDVSHI----------- 120
Query: 112 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV 171
LR + ++ P PT ++
Sbjct: 121 ----------------------LRYAVDLAQESAPFSPTY------------------SI 140
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
+V+G+PNVGKSS++NALR ++KGKA G AGVT+ + V+I E P +Y+ DTPG+
Sbjct: 141 LVLGMPNVGKSSLLNALRRVGLRKGKAFQTGAIAGVTKKLTGTVRIYEDPQVYVYDTPGV 200
Query: 232 SLP----RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD--- 284
+P + E G++LA A +++ L I+DY+L+ +NR RYV +L
Sbjct: 201 MMPYLGKGEEGGEKGLKLALTAGIKEDLFELDAISDYLLWKMNR----RYVSEPSLPSYL 256
Query: 285 ---------EPSDDIVMLLA----KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEH 331
EP+D + LL+ + A K+K + D V R F+
Sbjct: 257 SSLPLPPSFEPTDHLPTLLSALSNRLAAKQKGGEE-------------DWESVMRWFVRA 303
Query: 332 FRKGSFGSVMLD 343
+R+G G LD
Sbjct: 304 WREGKMGEWTLD 315
>gi|399047108|ref|ZP_10739240.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|433546085|ref|ZP_20502423.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
gi|398054941|gb|EJL47039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|432182701|gb|ELK40264.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
Length = 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + V + +P +++LNK DL + K
Sbjct: 10 MAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSD-KPRLILLNKADLADEKAT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RKE + + KGV K+ + ++ +M
Sbjct: 69 EEWIAYFRKEGIRTLPIDALSG-----KGVNKLPELCKELAADML--------------- 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A RS +G+A+ +M++G+PNVG
Sbjct: 109 ------------AKRSERGMQGRAI------------------------RIMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN + K G + VT++ VK+ + + +LDTPGI P+ ++
Sbjct: 133 KSSLIN-----RLSKRSVAATGDRPAVTKA-QQWVKMGDT--LELLDTPGILWPKFEDQM 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLAA ++D L+ +A +++ Y+ R ++ F L E DD + +L + I
Sbjct: 185 VGLRLAASGAIKDELIDFTEVALFVISYMMHYYPERLIERFKLKELPDDRIAMLEE--IG 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR +S ++ D + A IF+ R G G + ++R
Sbjct: 243 K---KRGCLISGGNI----DYDKAAEIFLRELRSGKLGPISVER 279
>gi|2618702|gb|AAB84349.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + R ++ LNK+DL N
Sbjct: 33 MAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKR-RIIALNKKDLAN---- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
PN V + +H + +
Sbjct: 88 ------------------------PNVLNVIRFFKWTRHFESSKQD------------CI 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ +SS++ L +K + + PTL VMVVGVPNVG
Sbjct: 112 AINAHSRSSVMKLLDLVELKLKEVIAREPTL------------------LVMVVGVPNVG 153
Query: 181 KSSIIN------ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN A R ++ K VGP GVT+ + + KI+ +P IY+LD+PG+ +P
Sbjct: 154 KSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDSPGVLVP 212
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG---NYRYV 278
I ++E G++LA +++D +VGE IA Y L LN G +++Y+
Sbjct: 213 SIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHWKYL 259
>gi|212534658|ref|XP_002147485.1| mitochondrial GTPase (YlqF), putative [Talaromyces marneffei ATCC
18224]
gi|210069884|gb|EEA23974.1| mitochondrial GTPase (YlqF), putative [Talaromyces marneffei ATCC
18224]
Length = 356
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
L+H+ + + HR + + MVVG+PN+GKSS+IN LR+ + K KA+ G GVTR
Sbjct: 117 LRHLKADKSTAHR--IAASRAMVVGMPNIGKSSLINTLRNQGVHKAKALKTGEHPGVTRK 174
Query: 211 VMSQVKISEK---PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+ + VK+ E+ +++LDTPG+ +P + + E ++LA C ++D ++ + +ADY+L+
Sbjct: 175 IGTPVKVVEREDGSSVHVLDTPGVFVPYMPDAERMLKLALCGCVKDTIIPPVTLADYLLY 234
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
+N Y + EP+++++ LL + A V S P+ + A
Sbjct: 235 QINLFDPKVYEKW---SEPTNEVMPLLTRF---------AHQVGLLSKGAVPNIEQAAIN 282
Query: 328 FIEHFRKGSFGSVMLD 343
++ +R G G +LD
Sbjct: 283 LVQKWRSGDLGKFVLD 298
>gi|389647281|ref|XP_003721272.1| mitochondrial GTPase 1 [Magnaporthe oryzae 70-15]
gi|86196198|gb|EAQ70836.1| hypothetical protein MGCH7_ch7g243 [Magnaporthe oryzae 70-15]
gi|351638664|gb|EHA46529.1| mitochondrial GTPase 1 [Magnaporthe oryzae 70-15]
gi|440464898|gb|ELQ34250.1| mitochondrial GTPase 1 [Magnaporthe oryzae Y34]
gi|440479978|gb|ELQ60701.1| mitochondrial GTPase 1 [Magnaporthe oryzae P131]
Length = 423
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 166/356 (46%), Gaps = 56/356 (15%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR-----PMVLVLNKRDLINSKHESL 62
+ K L N+ ++IE D R+P + N +L+ +Q++ P ++V KRDL + L
Sbjct: 57 MSKVLSNIGLIIECRDFRVPISSWNPILEHKLQSLGGHQAIPRIVVYTKRDLGPGRPRDL 116
Query: 63 -IEEKVRKEQSHISEVIFTN----CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
I + +R+ S + T R P G ++ + E+ +
Sbjct: 117 PIVDALRRFHGAESSSVDTPGGFVAREPAVDGGRE--------RSRRGKADGGEIPSALF 168
Query: 118 MVVGVPNV-GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ G N G ++++A+R+ + K A H + + +V+G+
Sbjct: 169 LGKGESNASGDRALMSAIRA--LAKSDA----------------SHSSHLLGLRAIVIGM 210
Query: 177 PNVGKSSIINALRSSHMKKG-KAVPVGPKAGVTRSVMSQVKI----SEKPL----IYILD 227
PN GKSS++N LR +K KA G + G+TR + + V+I +++ L ++++D
Sbjct: 211 PNAGKSSLLNRLRHRGVKANTKAASTGAQPGITRKLGTPVRILSNEADEDLPDRGVFVMD 270
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPG+ +P + + E ++LA ++D LV + +ADY+L++LN G + ++ P+
Sbjct: 271 TPGVFVPYVGDPESMLKLALVNCVRDGLVNPVTLADYLLYHLNLRGQTKAYEWL-CATPT 329
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+D+ + L AA +R + V P +A I +R+G G ++LD
Sbjct: 330 NDVNVFLESAA------RRTGKLLPGGV---PAIDAIAEYVISLYRRGELGKLVLD 376
>gi|440635065|gb|ELR04984.1| hypothetical protein GMDG_00241 [Geomyces destructans 20631-21]
Length = 344
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 158 MTRYHRTEVYNTT---VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ 214
+ H E+ + T +++VG+PNVGKSS++NALR + +GKA G + G+TR + S
Sbjct: 119 FAKQHAQELDSLTGSRMLIVGMPNVGKSSLLNALRMEGVNRGKAAYTGAQPGITRKIASG 178
Query: 215 VKISEKPL------IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFY 268
VKI ++ +Y++DTPG+ +P + + E +RLA C +++D ++ + DY+LF+
Sbjct: 179 VKIVDRDPEAGSEGVYLVDTPGVFVPFVPDPESMLRLALCGSVKDTIIAPTTLVDYLLFH 238
Query: 269 LNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIF 328
+N+ Y ++ P++D+ +L K ++ PD A
Sbjct: 239 INKHDPKIYREYC---PPTNDVHEMLNAVCHKTGRLQKG---------GVPDIEAAALWL 286
Query: 329 IEHFRKGSFGSVMLD 343
I+ +R+G+ G +LD
Sbjct: 287 IQRWRQGNLGCFVLD 301
>gi|320589495|gb|EFX01956.1| mitochondrial GTPase [Grosmannia clavigera kw1407]
Length = 467
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 160 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM----KKGKAVPVGPKAGVTRSVMSQV 215
R+ + + +VVG+PN GKS+++N LR+ M ++ +A G + GVTR + +
Sbjct: 236 RHGQQSLTGLRALVVGMPNAGKSTLLNRLRAHGMADPSRRARAAKTGSQPGVTRKLGTPT 295
Query: 216 KISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY 275
S + ++DTPG+ +P + + E ++LA +++ LV + +ADY+LF LNR
Sbjct: 296 PTSSDDTLLLMDTPGVFVPYVQDPESMLKLALAGCVREGLVPSVALADYLLFQLNRRDPA 355
Query: 276 RYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKG 335
RYVD F L +P+ D+ +LL A + R + P A + +R+G
Sbjct: 356 RYVDAFGLRQPTTDVHVLLDAVARRTGKLARHGE---------PALDAAALHLVHAWRRG 406
Query: 336 SFGSVMLD 343
G LD
Sbjct: 407 RLGRFCLD 414
>gi|281202659|gb|EFA76861.1| hypothetical protein PPL_09613 [Polysphondylium pallidum PN500]
Length = 423
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 106/183 (57%), Gaps = 11/183 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++V+GVPNVGKSS+IN++R++ + K+ G GVTR++ + ++S+ P +++DTPG
Sbjct: 205 MLVIGVPNVGKSSLINSIRNA-CRMTKSAKTGALPGVTRNI-TGFRVSDDPPAFLVDTPG 262
Query: 231 ISLPRI-DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD 289
I +P + +++E + L+ + + +V +ADY+LF +N+ YV LD P+DD
Sbjct: 263 IMIPGVLEDVERALTLSLVGAISEKIVDHTVVADYLLFKMNQMRITTYVTVLKLDAPTDD 322
Query: 290 IVMLLAKAAIKKKWF---KRAF-DVSSNSVRMFP----DTGEVARIFIEHFRKGSFGSVM 341
I LL K + ++ F + N+ R+ DT + +R I FR+G FG+
Sbjct: 323 INRLLEHICQLKGMYLTNQQQFQQIKLNNDRLNSNKTNDTEQASRYLINLFREGKFGNFT 382
Query: 342 LDR 344
LD+
Sbjct: 383 LDK 385
>gi|218188297|gb|EEC70724.1| hypothetical protein OsI_02108 [Oryza sativa Indica Group]
Length = 370
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 122/277 (44%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+V+EV D+R+P + N LQ + + R +L LNK+DL
Sbjct: 30 MAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQPVLASKR-RILALNKKDLA----- 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRY-HRTEVYNTTVMV 119
NPN M R+ H E +
Sbjct: 84 -----------------------NPNI----------------MNRWLHHFESCKQDCIS 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + SS+ L K +A+ PTL VMVVGVPNV
Sbjct: 105 INAHST--SSVSQLLGLVEFKLKEAISKEPTL------------------LVMVVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KIS +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDI-AGYKISSQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L LN
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
>gi|115485369|ref|NP_001067828.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|62701701|gb|AAX92774.1| short integuments 2 [Oryza sativa Japonica Group]
gi|77550521|gb|ABA93318.1| GTP-binding proteins, putative, expressed [Oryza sativa Japonica
Group]
gi|113645050|dbj|BAF28191.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|222628343|gb|EEE60475.1| hypothetical protein OsJ_13737 [Oryza sativa Japonica Group]
Length = 370
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 122/277 (44%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+V+EV D+R+P + N LQ + + R +L LNK+DL
Sbjct: 30 MAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQPVLASKR-RILALNKKDLA----- 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRY-HRTEVYNTTVMV 119
NPN M R+ H E +
Sbjct: 84 -----------------------NPNI----------------MNRWLHHFESCKQDCIS 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + SS+ L K +A+ PTL VMVVGVPNV
Sbjct: 105 INAHST--SSVSQLLGLVEFKLKEAISKEPTL------------------LVMVVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KIS +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDI-AGYKISSQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L LN
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
>gi|401882505|gb|EJT46761.1| hypothetical protein A1Q1_04504 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701360|gb|EKD04508.1| hypothetical protein A1Q2_01205 [Trichosporon asahii var. asahii
CBS 8904]
Length = 471
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 26/204 (12%)
Query: 157 NMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK 216
N+ + + + V+VVG+PNVGKSS++NALR +KKGKA G GVTR + VK
Sbjct: 132 NIAKERGETLTDLKVLVVGMPNVGKSSLLNALRRVGVKKGKAFTTGATPGVTRKLTGTVK 191
Query: 217 ISEKPLIYILDTPGISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLNR- 271
+ EKP +Y+ DTPG+ +P + E G++LA A ++ L E +ADY+L+ +N
Sbjct: 192 VYEKPNVYVFDTPGVMVPYLGKGEVGAERGLKLALTAGIKTGLFEEEVVADYLLYKMNLR 251
Query: 272 -------TGNYR---YVDFFNLD--EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP 319
++R Y F L SDD+ L A + K+ + + S +
Sbjct: 252 LAAEEMVGSDHRHAPYTQFLGLQATAASDDLNEFLESLAARLGGLKKGGALDTESALTY- 310
Query: 320 DTGEVARIFIEHFRKGSFGSVMLD 343
+ FR+G G LD
Sbjct: 311 --------LLRVFREGKLGPWTLD 326
>gi|297824129|ref|XP_002879947.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
gi|297325786|gb|EFH56206.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 74/287 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + R ++ LNK+DL N
Sbjct: 33 MAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKR-RIIALNKKDLANP--- 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + R +S + I N +
Sbjct: 89 NVLNKWTRHFESSKQDCIAINAHS------------------------------------ 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+SS++ L +K + + PTL VMVVGVPNVG
Sbjct: 113 ------RSSVMKLLDLVELKLKEVIAREPTL------------------LVMVVGVPNVG 148
Query: 181 KSSIIN------ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN A R ++ K VGP GVT+ + + KI+ +P IY+LD+PG+ +P
Sbjct: 149 KSALINSVHQIAAARFPVQERLKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDSPGVLVP 207
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG---NYRYV 278
I ++E G++LA +++D +VGE IA Y L LN G +++Y+
Sbjct: 208 SIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHWKYL 254
>gi|336276309|ref|XP_003352908.1| hypothetical protein SMAC_05022 [Sordaria macrospora k-hell]
gi|380093027|emb|CCC09264.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 424
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 157/360 (43%), Gaps = 65/360 (18%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLI----N 56
L + + + NV ++IE D R+P N LL++S+ R ++V K DL N
Sbjct: 62 LNKMRQTISNVGLIIECRDFRVPICSWNPLLERSLAASAAGERSRIVVYTKHDLGPPSGN 121
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ IE +T+ R + K + K L ++H+
Sbjct: 122 FSKETSIES-------------YTDGRYQSGKDIVKTL----------RKFHKNSHTTKD 158
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
VM +G RS + +L ++ I+ + MVVG+
Sbjct: 159 VMFLGTSA--------GARSRNDAPNNDKNLLAAIKRIA-----LEAESLTGMRAMVVGM 205
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEKPL-------IY 224
PN GKS+++N LR+ M KA G GVTR + + V+I ++ P ++
Sbjct: 206 PNSGKSTLLNRLRAKGMGLPKAAQTGSTPGVTRKIGTPVRIIAGESADDPSSAGLGEGVF 265
Query: 225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
I+DTPG+ +P + + E MRLA ++D ++ + +ADY+L++LN Y F+L
Sbjct: 266 IMDTPGVFIPYVSDPEDMMRLALVGCVKDGVIPSVTVADYLLYHLNLVDPKLYTRKFDLG 325
Query: 285 EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+P++D+ L A + ++ +++ + A ++ +R+G G L++
Sbjct: 326 KPTNDVHEFLRAVATRTGKLRKGSELNLEN---------AADWVVQAWRRGDLGRFALEK 376
>gi|168023788|ref|XP_001764419.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684283|gb|EDQ70686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 79/288 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M K I + +K VD+V+EV D+R+P + N Q DL+ K
Sbjct: 26 MASATKAIRERIKVVDLVVEVRDARIPLSSANSEFQ----------------DLLERKKR 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ K+ + NPN TL+ S H ++ V V
Sbjct: 70 LIVCNKM-------------DLANPNM--------TLKWES------HFQKLNQRLVFV- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
NA ++ ++K + ++ ++ R + +M+VG+PNVG
Sbjct: 102 -----------NAHQTKSVRK---------MLEVAWDLLREKLAKEPTLLLMIVGIPNVG 141
Query: 181 KSSIINAL----------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
KS++IN L H+KK K VGP GVT+ + S KI EKP +Y+LDTPG
Sbjct: 142 KSALINTLFRHAHAIAKSEQEHLKKAK---VGPLPGVTQHI-SGFKIGEKPSVYVLDTPG 197
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRY 277
+ +P IDN++ G++LA ++D +VGE +A Y+L LN R+ + R+
Sbjct: 198 VLVPNIDNIDTGLKLALTGAVKDSVVGEERVARYLLSVLNARSSHLRW 245
>gi|30688739|ref|NP_850353.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|20466544|gb|AAM20589.1| unknown protein [Arabidopsis thaliana]
gi|23198342|gb|AAN15698.1| unknown protein [Arabidopsis thaliana]
gi|32396052|gb|AAP41843.1| short integuments 2 [Arabidopsis thaliana]
gi|330254920|gb|AEC10014.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 386
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 74/287 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + R ++ LNK+DL N
Sbjct: 33 MAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKR-RIIALNKKDLANP--- 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + R +S + I N +
Sbjct: 89 NVLNKWTRHFESSKQDCIAINAHS------------------------------------ 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+SS++ L +K + + PTL VMVVGVPNVG
Sbjct: 113 ------RSSVMKLLDLVELKLKEVIAREPTL------------------LVMVVGVPNVG 148
Query: 181 KSSIIN------ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN A R ++ K VGP GVT+ + + KI+ +P IY+LD+PG+ +P
Sbjct: 149 KSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDSPGVLVP 207
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG---NYRYV 278
I ++E G++LA +++D +VGE IA Y L LN G +++Y+
Sbjct: 208 SIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRGTPLHWKYL 254
>gi|258597779|ref|XP_001348519.2| conserved protein, unknown function [Plasmodium falciparum 3D7]
gi|255528843|gb|AAN36958.2| conserved protein, unknown function [Plasmodium falciparum 3D7]
Length = 431
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 151/349 (43%), Gaps = 60/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I+K D++IEV D+R+PFT N + ++ + N +
Sbjct: 102 MHKSSLNIKKKFDISDLIIEVRDARLPFTCTNDFIIDDLKKKLAINYNNNNKKKKRIIIL 161
Query: 61 SLIEEKVR----KEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
+ ++ R K QS I E T C + K K + ++ I M ++ +
Sbjct: 162 NKVDLIPRRLALKAQSLIEEKTNTMCLLTSSK-YNKNISKIRDICKEMKPKFKS--FGLF 218
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
M++G+PNVGKSSIIN+ + I+ N+++Y G
Sbjct: 219 AMLIGLPNVGKSSIINSFKD-----------------ITYNLSKY-------------GY 248
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
N + +N K V AG T+ ++ K+S PL+Y++DTPGI LP++
Sbjct: 249 KNNKIAFEVNR---------KRVKTNVLAGTTK-MIDTYKVSNNPLLYLIDTPGIFLPKL 298
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
++ E ++L++ D+ + + DYILF LN+ +Y YV LD PS+DI
Sbjct: 299 EDKEISLKLSSIGNTLDYKYDHMYVGDYILFTLNKHKHYNYVKILGLDSPSNDI------ 352
Query: 297 AAIKKKWFKRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFGSVMLD 343
++ N R + D R FI+ FR G G V L+
Sbjct: 353 -----RFISNVISTKLNLCRNYKYLDINGGCRFFIDMFRLGLLGHVCLE 396
>gi|226313197|ref|YP_002773091.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
gi|226096145|dbj|BAH44587.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
Length = 297
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + V + +P +++LNK DL + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSD-KPRLILLNKADLADERAT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RK+ + + KGV K+ + ++ +M
Sbjct: 69 DEWIAYFRKQGIRTLPIDALSG-----KGVSKLPEMCKELAADML--------------- 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A RS +G+A+ +M++G+PNVG
Sbjct: 109 ------------AKRSERGMQGRAI------------------------RIMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN + K G + VT++ VK+ + + +LDTPGI P+ ++
Sbjct: 133 KSSLIN-----RLSKRSVAATGDRPAVTKA-QQWVKMGDT--LELLDTPGILWPKFEDQM 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLAA ++D L+ +A +++ Y+ R ++ F L E +D V +L + I
Sbjct: 185 VGLRLAASGAIKDELIDFTEVALFVISYMMHYYPERLIERFKLKELPEDRVEMLEE--IG 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR VS ++ D + A IF+ R G G+V ++R
Sbjct: 243 K---KRGCLVSGGNI----DYDKAAEIFLRELRSGKLGTVSVER 279
>gi|414871398|tpg|DAA49955.1| TPA: GTPase family protein, mRNA [Zea mays]
Length = 373
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ V + + +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQ-PVLSAKRRILALNKKDLANPNI- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F +C+ +C +
Sbjct: 88 ------MNRWLNH-----FESCKQ-DCISI------------------------------ 105
Query: 121 GVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N SS +N L + +K +A+ PTL +M+VGVPNV
Sbjct: 106 ---NAHSSSSVNQLLGFAELKLKEAISKEPTL------------------LIMLVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KI+ +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDI-AGYKIATQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L N
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFN 240
>gi|392574882|gb|EIW68017.1| hypothetical protein TREMEDRAFT_15554, partial [Tremella
mesenterica DSM 1558]
Length = 323
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V+VVG+PNVGKSS++NALR M KGKA G +AG+TR + VKI E PL+Y+ DTPG
Sbjct: 139 VLVVGMPNVGKSSLLNALRRVGMHKGKAFRTGAEAGITRRLTGTVKIFESPLVYVYDTPG 198
Query: 231 ISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLN-----------RTGNY 275
+ +P + E G++LA A +++ L + DY+L+ +N +
Sbjct: 199 VMIPYLGHGIIGAERGLKLALTAGIKEGLFERDVMVDYLLWRMNIKLTQQQHLPLDQRDP 258
Query: 276 RYVDFFNL----DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEH 331
Y+D L +P++D LL+ A + ++ + PD A I
Sbjct: 259 TYLDLLPLPLTFTQPTEDPQTLLSALAQRLGALRKGGE---------PDLEASATYLIRA 309
Query: 332 FRKGSFGSVMLD 343
FR+G G LD
Sbjct: 310 FREGKLGPWTLD 321
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 27/158 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRN----HLLQQSV--------QNIRPMVLV 48
M R L+ + L+++D+VIE D+R+ T N ++L ++ + R V+V
Sbjct: 22 MVRSLRALPALLEDIDLVIEARDARLALTSINPTFDNILAKAWGSRKGKERADEREKVVV 81
Query: 49 LNKRDLINSKHESLIEEKVRKEQSHISE-VIFTNCR-NPNCKGVQKILPTLQHISDNMTR 106
KRDL + E + ++ +SH+++ V F + R + + K + L+H D
Sbjct: 82 YTKRDLAEGRFEVPL---IKAFKSHMNQQVFFADTRSDADVKSI------LRHAID---- 128
Query: 107 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKA 144
+ + V+VVG+PNVGKSS++NALR M KGKA
Sbjct: 129 FAKGREEGLKVLVVGMPNVGKSSLLNALRRVGMHKGKA 166
>gi|402300897|ref|ZP_10820338.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
gi|401723983|gb|EJS97390.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
Length = 287
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +D+VIE+ D+R+P + RN ++ + V++ +P +++LNK DL +
Sbjct: 10 MAKARREVTEQLKMIDVVIELVDARIPLSSRNPMIDKLVEH-KPRLILLNKADLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNC--RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
E + K +S+ ++ ++ + N KG +KI Q ++ M
Sbjct: 65 ---ESRTAKWKSYFEKLGYSVLVINSQNGKGTEKISGECQKLATPM-------------- 107
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ +++ MK +A+ M++G+PN
Sbjct: 108 ------------LEKMKAKGMKP-RAI------------------------RAMILGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L + + VG + GVT+ +K+ ++ + +LDTPGI P+ ++
Sbjct: 131 VGKSTLINRLAAK-----RTAQVGDRPGVTKR-QQWIKVGKQ--LELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
+ G RLAA ++D ++ +IA + + YL R + + LDE S D V LL +
Sbjct: 183 QQTGFRLAATGAIKDEILDFQDIALFAVTYLREHYPKRLQERYKLDELSTDNVELLDQIG 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR F S + D +VA + R G G + +
Sbjct: 243 -----EKRGFLASGGYI----DYDKVAETILRELRGGLLGRLSFE 278
>gi|398814561|ref|ZP_10573242.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
gi|398036830|gb|EJL30039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
Length = 297
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 154/344 (44%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + V + +P +++LNK DL + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSD-KPRLILLNKADLADERAT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RK+ + + KGV K+ + ++ +M
Sbjct: 69 DEWIAYFRKQGIRTLPIDALSG-----KGVSKLPEMCKELAADML--------------- 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A RS +G+A+ +M++G+PNVG
Sbjct: 109 ------------AKRSERGMQGRAI------------------------RIMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN + K G + VT++ VK+ + + +LDTPGI P+ ++
Sbjct: 133 KSSLIN-----RLSKRSVAATGDRPAVTKA-QQWVKMGDT--LELLDTPGILWPKFEDQM 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLAA ++D L+ +A +++ Y+ R ++ F L E +D V +L + I
Sbjct: 185 VGLRLAASGAIKDELIDFTEVALFVISYMMHYYPERLIERFKLKELPEDRVEMLEE--IG 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR VS ++ D + A IF+ R G G++ ++R
Sbjct: 243 K---KRGCLVSGGNI----DYDKAAEIFLRELRSGKLGTISVER 279
>gi|116193381|ref|XP_001222503.1| hypothetical protein CHGG_06408 [Chaetomium globosum CBS 148.51]
gi|88182321|gb|EAQ89789.1| hypothetical protein CHGG_06408 [Chaetomium globosum CBS 148.51]
Length = 419
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 154/366 (42%), Gaps = 76/366 (20%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM----VLVLNKRDLINSKH 59
GL + + L V ++IE D R+P T N LL+QS+ P ++V RDL H
Sbjct: 51 GLARMRQSLATVGLIIECRDFRVPITSWNPLLEQSLAGSSPAERARIIVYTHRDLGPDSH 110
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
S +SE + RN + LQH H TEV T+
Sbjct: 111 PS-----DDPSTPSLSESAAHHLRNFH----------LQH-------NHATEVLFTST-- 146
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G P+ K P L I+ R + +VVG+PN
Sbjct: 147 -GTPS--------------SKSPTNTPTAALLSAIT--RVARDRDSLTGLRALVVGMPNA 189
Query: 180 GKSSIINALRSSHMKK---------GKAVPVGPKAGVTRSVMSQVKI-----SEKPL--- 222
GKS+++NALR +K K G GVTR + S V+I + L
Sbjct: 190 GKSTLLNALRRRSVKGTGAAVRASGAKVARTGANPGVTRKLSSPVRIVPAEGQDASLAGV 249
Query: 223 ---IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTG--NYRY 277
++++DTPG+ +P + + E ++LA ++D ++ +ADY+LF LN G Y
Sbjct: 250 GEGVFVVDTPGVFIPYVSDPEKMLKLALVGCVRDGILPRETLADYLLFRLNLDGEAGRGY 309
Query: 278 VDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSF 337
V+ + P++D+ L A+ K+ K A +N DT A ++ +R G F
Sbjct: 310 VERLGMAGPTNDVTEFL--EAVAKRVGKLAKGGGANY-----DT--AAEWAVQAWRGGGF 360
Query: 338 GSVMLD 343
G V+LD
Sbjct: 361 GKVLLD 366
>gi|414871397|tpg|DAA49954.1| TPA: GTPase family protein [Zea mays]
Length = 368
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ V + + +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQ-PVLSAKRRILALNKKDLANPNI- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F +C+ +C +
Sbjct: 88 ------MNRWLNH-----FESCKQ-DCISI------------------------------ 105
Query: 121 GVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N SS +N L + +K +A+ PTL +M+VGVPNV
Sbjct: 106 ---NAHSSSSVNQLLGFAELKLKEAISKEPTL------------------LIMLVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KI+ +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDI-AGYKIATQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L N
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFN 240
>gi|223973159|gb|ACN30767.1| unknown [Zea mays]
Length = 369
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ V + + +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQ-PVLSAKRRILALNKKDLANPNI- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F +C+ +C +
Sbjct: 88 ------MNRWLNH-----FESCKQ-DCISI------------------------------ 105
Query: 121 GVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N SS +N L + +K +A+ PTL +M+VGVPNV
Sbjct: 106 ---NAHSSSSVNQLLGFAELKLKEAISKEPTL------------------LIMLVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KI+ +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDI-AGYKIATQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L N
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFN 240
>gi|408356881|ref|YP_006845412.1| GTP-binding protein [Amphibacillus xylanus NBRC 15112]
gi|407727652|dbj|BAM47650.1| putative GTP-binding protein [Amphibacillus xylanus NBRC 15112]
Length = 283
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 76/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK VD VIE+ D+R P +N +LQ+ +Q +P + VL K+DL + +
Sbjct: 11 MAKARREVQEKLKLVDFVIELVDARAPLASQNPMLQEILQQ-KPKMQVLMKKDLADPELT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTVMV 119
++ EK+R+++ V N ++ +QK++ T + + ++ M R + V
Sbjct: 70 NIWLEKLREDEIEAVAVDVQNRQD-----IQKVIETAKKMTAEKMERLKKKGVR------ 118
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
P G++ M++G+PNV
Sbjct: 119 ---PRAGRA-------------------------------------------MIIGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L + + K G + G+T +Q I K +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLANKKIAK-----TGDRPGIT---TAQQWIKVKKDFELLDTPGILWPKFEDQ 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G +LAA T++D ++ +IA + L ++ ++ + L +P D + ++ +
Sbjct: 185 NVGYQLAAIGTIKDQILSIEDIARFTLKFIQEEYPQLLLERYQLLDPEADYIEIIEQIG- 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+R SV D + A + I FR G G + L++
Sbjct: 244 ----RQRGALAQGGSV----DLEKTAELVIRDFRTGKLGPITLEK 280
>gi|407795754|ref|ZP_11142712.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
gi|407020095|gb|EKE32809.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
Length = 279
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 148/344 (43%), Gaps = 75/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++++++LK VD VIE+ D+R P + +N +LQ+ +Q+ +P ++V+ K+DL +
Sbjct: 10 MAKARREVKENLKLVDFVIELVDARAPLSSQNPMLQEEIQD-KPKLVVMMKQDLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E + S S + + NP K +QKI + I++ R + N
Sbjct: 66 GVTKEWIDYFDSTFSHAVAVDVNNP--KNIQKIAEASRQITEEKLEKQRAKGVNPR---- 119
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N M+VG+PNVG
Sbjct: 120 -----------------------------------------------NPRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN R +H KK + G K GVT+ Q I K +LDTPGI P+ +
Sbjct: 133 KSSLIN--RLAHKKKAE---TGDKPGVTKK---QQWIKVKNEFELLDTPGILWPKFEEEV 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA T++D ++ + +A +IL +L + + F + +D+V K K
Sbjct: 185 TGFRLAAIGTIKDQVLPQDEVAIFILNHLKERYPEQLEERFGFSD-FEDVVEAFDKIGKK 243
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + V D +VA I I+ R G + +R
Sbjct: 244 RGALEAGGVV---------DYEKVAEIIIQDLRSNRIGRISFER 278
>gi|226499776|ref|NP_001151234.1| GTPase family protein [Zea mays]
gi|195645228|gb|ACG42082.1| GTPase family protein [Zea mays]
Length = 369
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 126/277 (45%), Gaps = 73/277 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D++IEV D+R+P + N LQ V + + +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLIIEVRDARIPLSSANEDLQ-PVLSAKRRILALNKKDLANPNI- 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +H F +C+ +C +
Sbjct: 88 ------MNRWLNH-----FESCKQ-DCISI------------------------------ 105
Query: 121 GVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N SS +N L + +K +A+ PTL +M+VGVPNV
Sbjct: 106 ---NAHSSSSVNQLLGFAELKLKEAISKEPTL------------------LIMLVGVPNV 144
Query: 180 GKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
GKS++IN++ R K K VGP GVT+ + + KI+ +P IY+LDTPG+ +
Sbjct: 145 GKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDI-AGYKIATQPSIYVLDTPGVLV 203
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P I ++E G++LA ++D +VGE IA Y+L N
Sbjct: 204 PSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFN 240
>gi|295666478|ref|XP_002793789.1| mitochondrial GTPase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277442|gb|EEH33008.1| mitochondrial GTPase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 345
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 76/343 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KHESL 62
GL+ +++ L +D VIE D R+P T N L ++++ + +V KRDL K E+
Sbjct: 29 GLERMKEMLSTIDHVIECRDFRIPATSINPLFEEALGE-KSRSIVYTKRDLGGDLKLENQ 87
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
EK+ + + S+V F + N N I+P ++ + + + + ++VVG+
Sbjct: 88 KREKMIQRWNRGSKVFFASKFNNNT-----IVPIVKSLKRQPFKIDKITGFR--ILVVGM 140
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PN+GKSS+IN+LR MK I + + R
Sbjct: 141 PNIGKSSLINSLRKYAMK-------------IKNKVAR---------------------- 165
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLPRIDNLE 240
G GVTR V + +KI E+ +Y+ DTPG+ +P + + E
Sbjct: 166 ------------------TGADPGVTRRVGTGIKIIERRQGSVYVHDTPGVFMPYMPDSE 207
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++L C L+ ++ I +ADY+L+ +N ++ + + P++DI+ L A K
Sbjct: 208 SMLKLGLCGCLKQSIIPIITLADYLLYQINL---HKPIIYGKYSPPTNDIIQFLKAFAAK 264
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ PD A I F+KG G+ ++D
Sbjct: 265 TGCLSKG---------GIPDVNTAANKMINMFQKGKLGTFIMD 298
>gi|441505950|ref|ZP_20987929.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium sp.
AK15]
gi|441426416|gb|ELR63899.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium sp.
AK15]
Length = 316
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 155/348 (44%), Gaps = 85/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKH 59
M + K+IE+ L +D++IEV D+R+PF+ N L++ +N +P+V VLNKRDL + +
Sbjct: 12 MHKARKEIEEVLPKIDVIIEVLDARIPFSSENPLIKTFREKNDKPVVKVLNKRDLADPEM 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ E + KE +GV+ I T ++N+ H+
Sbjct: 72 TQMWIEHLEKE-----------------QGVKAIAIT----TENVNEVHK---------- 100
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPN 178
I++ R K P HR E+ N M++G+PN
Sbjct: 101 ----------IMDLCR-------KLAP---------------HREEMGKNIRTMIMGIPN 128
Query: 179 VGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+IIN L G+ V V G + VTR Q +I+ + I + DTPGI P+++
Sbjct: 129 VGKSTIINTL------AGRTVAVTGNQPAVTRQ---QQRINLQNGIVLSDTPGILWPKVE 179
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAK 296
N G RLAA ++D + I++A + + YL +NLD E + + L+ +
Sbjct: 180 NPHSGFRLAATGAVKDTAMDYIDVAFFTVEYLKEAYPELIKARYNLDNELPETEIELMEE 239
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K+ K V D + + I I R G+ G + ++R
Sbjct: 240 IGRKRGCLKAGGRV---------DMHKASEILINELRNGTLGHITMER 278
>gi|50551909|ref|XP_503429.1| YALI0E01760p [Yarrowia lipolytica]
gi|49649298|emb|CAG79008.1| YALI0E01760p [Yarrowia lipolytica CLIB122]
Length = 398
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 30/185 (16%)
Query: 171 VMVVGVPNVGKSSIINALR----------SSHMKKGKAVPVGPKAGVTRSVMSQVKISEK 220
+++ G+PNVGKS+++N +R KK PVG +AGVTR++ +++K+ +
Sbjct: 189 MLICGMPNVGKSTLVNTMRRLVVEKTNDWKMQGKKRSVAPVGQQAGVTRALSNRIKVCDS 248
Query: 221 PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF 280
P I++ D+PG+ +P I N E ++LA +++ LV I ADY+L+ LNR Y D
Sbjct: 249 PNIFVFDSPGLFMPSIANSETMIKLALLKCIKESLVDPIVQADYLLYALNRDDPKSYRD- 307
Query: 281 FNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFG 338
L P++DI +L A+++KW R P D G R +I + G G
Sbjct: 308 --LCPPTNDINDIL--VALRRKW------------RSTPNQDAGTALR-WINEWVSGKKG 350
Query: 339 SVMLD 343
VMLD
Sbjct: 351 KVMLD 355
>gi|242034429|ref|XP_002464609.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
gi|241918463|gb|EER91607.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
Length = 369
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 124/279 (44%), Gaps = 77/279 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ V + + +L LNK+DL
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQ-PVLSAKRRILALNKKDLA----- 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRY--HRTEVYNTTVM 118
NPN M R+ H +
Sbjct: 84 -----------------------NPNI----------------MNRWLNHFESCKQDCIS 104
Query: 119 VVGVPNVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
V N S+ +N L + +K +A+ PTL +M+VGVP
Sbjct: 105 V----NAHSSNSVNQLLGFAELKLKEAISKEPTL------------------LIMLVGVP 142
Query: 178 NVGKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
NVGKS++IN++ R K K VGP GVT+ + + KI+ +P IY+LDTPG+
Sbjct: 143 NVGKSALINSIHRIATSRFPVKDKKKRATVGPLPGVTQDI-AGYKIATQPSIYVLDTPGV 201
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
+P I ++E G++LA ++D +VGE IA Y+L LN
Sbjct: 202 LVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
>gi|431794549|ref|YP_007221454.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784775|gb|AGA70058.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 303
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 86/337 (25%)
Query: 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
L+ VD+VIE+ D+R+P + RN LLQ+ + + +P +++LNK DL + L +++R
Sbjct: 20 QLRWVDVVIELGDARLPESSRNPLLQEMLGD-KPKIVILNKSDLADPIQTELWIKELR-- 76
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
K+ P L V VGK
Sbjct: 77 ---------------------KVSPVL------------------AVSAATGAGVGK--- 94
Query: 131 INALRSSHMKKGKAVPILPTLQHI-SDNMTRYHRTEVYNTT--VMVVGVPNVGKSSIINA 187
I+PTL+ + +D + ++ + VMVVG+PN GKSS++N
Sbjct: 95 ----------------IVPTLERLMADKIEKWAAKGIRARAIRVMVVGIPNCGKSSLVNN 138
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L S K G K GVTR ++I +K + ++DTPG+ P+ ++ E G++L A
Sbjct: 139 LIGSAKAK-----TGNKPGVTRG-NQWIRIHDK--VELMDTPGLLWPKFEDTEVGIKLGA 190
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRA 307
++D ++ ++ ++L +L ++ Y D +L ++++ L + + KR
Sbjct: 191 AGAIRDEVLNLEELSIWLLAWLKQS----YPD--SLQRYTENVQDLDLEGIGR----KRG 240
Query: 308 FDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V V +F + A+IFI FR GS G LDR
Sbjct: 241 CLVKGGQVDIF----KAAQIFIREFRAGSLGRFTLDR 273
>gi|399218726|emb|CCF75613.1| unnamed protein product [Babesia microti strain RI]
Length = 399
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 53/344 (15%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M RG + + + ++ +IEV DSR+P + N + + P ++VLNK DL+
Sbjct: 71 MSRGKLKMAQRIDTINCIIEVRDSRVPLSSSNPEIYRQFPPKIPRLIVLNKADLVPKNDL 130
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K + T R+ V KI+ I+ N+ + ++++
Sbjct: 131 KRTLDLFEKANLKVLHTDATKNRH-----VGKIV-DFCKINCNI----KFASIGIAMLLI 180
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKSS+I + MK+ +Q+I+ R +R + GV ++
Sbjct: 181 GLPNVGKSSLITS-----MKR--------YVQNIAKYADRRNR--------ITEGV-SMS 218
Query: 181 KSSIINAL-RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
+I N L RS H VP G ++ ++ ++S P I+ DTPGI P+ D+L
Sbjct: 219 LCNIENTLPRSCH------VP-----GTSKH-LNMFQLSSNPKIFCFDTPGIMTPKSDDL 266
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E ++LA+ ++Q++ + I+DY+L++LN+ ++ YVD F+L P++ I + + A+
Sbjct: 267 ELNLKLASLGSIQENYQDILYISDYVLYWLNKHQHFSYVDHFHLSYPTNSIRHVASAASK 326
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR V D A +F++ FR G+ G +D
Sbjct: 327 IANMVKRDEFVG--------DEIAGANLFLKLFRNGTLGKFTMD 362
>gi|254569670|ref|XP_002491945.1| Cell-wall L-asparaginase II, involved in asparagine catabolism
[Komagataella pastoris GS115]
gi|238031742|emb|CAY69665.1| Cell-wall L-asparaginase II, involved in asparagine catabolism
[Komagataella pastoris GS115]
Length = 338
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTR 209
+Q I + R H V++ G+PNVGKS+++N LR + + K V G + GVTR
Sbjct: 107 IQMIREKHDRMHPKPPLGVRVIITGMPNVGKSTLVNTLRKIGLNRTKNVARTGGQPGVTR 166
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
S +++ + P I + DTPG+ LP++ ++E M LA T++ + + +ADY+LF L
Sbjct: 167 STSEIIRVHQNPEILVYDTPGVFLPKMKDVETMMSLALVGTIKPIKIDPVMVADYLLFVL 226
Query: 270 N---RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVAR 326
N TG+ +Y + + P++DI LL K A + K +R + N +++ D +
Sbjct: 227 NLQDPTGS-KYRKY--IKHPTNDIYELLEKIAERIKRVRR----TKNGIQI--DEIGSSL 277
Query: 327 IFIEHFRKGSFGSVMLDRDFL-ELD 350
FI+ +++G G + D D + E+D
Sbjct: 278 HFIDEWKQGRMGKCLFDLDAIKEID 302
>gi|149197591|ref|ZP_01874641.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
gi|149139161|gb|EDM27564.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
Length = 318
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 147/346 (42%), Gaps = 78/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +DI K LK VD+V+ + D+R P + N L + + + +P ++VLNK DL
Sbjct: 19 MLKATRDIRKQLKLVDVVMILTDARTPVSALNEGLIK-ITSTKPTLIVLNKADLAE---- 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+EK H+ + NC V I++ + R ++ NT ++
Sbjct: 74 ---DEKTLDWAEHLK------SKYENCDYV---------ITETINRRGLKQITNTARQLI 115
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ KKG P+ ++ +M+ GVPNVG
Sbjct: 116 --------------KEDRKKKGATRPLFRPIR------------------LMIAGVPNVG 143
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INAL + K+ GP+ GVTRS Q I+ + +LDTPGI P +E
Sbjct: 144 KSSLINALN-----RKKSARTGPRPGVTRS---QQWITLADDMELLDTPGIMPPGNPLVE 195
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP---SDDIVMLLAKA 297
CG+RL ++ L+G+ + Y++ + NY Y+ + P DDI+ +A
Sbjct: 196 CGLRLGLINAVKQDLIGKSLLVTYLMSQAFKHENYAYLKSLGVAFPVKDYDDILTTIAA- 254
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + + + PD + + + G FG + LD
Sbjct: 255 -------KMGYKLPGDE----PDIRKTEEFILRSYTDGKFGKMTLD 289
>gi|407716755|ref|YP_006838035.1| 50S ribosomal subunit maturation GTPase RbgA [Cycloclasticus sp.
P1]
gi|407257091|gb|AFT67532.1| 50S ribosomal subunit maturation GTPase RbgA [Cycloclasticus sp.
P1]
Length = 306
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 81/353 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I++ L VD+ IEV D+R+P++ N +L S++ +P + +LNK DL +
Sbjct: 10 MHKAQKEIKQRLPEVDMFIEVLDARIPYSSENPMLA-SIRADKPCIKILNKTDLAQADKT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E + + ++ ++ + N PN ++I Q +
Sbjct: 69 KAWQEYLERNKN--TKTLALNLNQPN--KSEQIFSLCQKL-------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
VPN G T++ T ++ G+PNVG
Sbjct: 105 -VPNKG-------------------------------------TKISPITCLITGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT++ Q +I I + DTPG+ P+++N +
Sbjct: 127 KSTLINTLAGRTIAK-----TGNEPAVTQT---QQRIDLGNNIILFDTPGLLWPKVENED 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLA ++D + +IA Y Y + + ++ ++LDEP + LL +I
Sbjct: 179 SGYRLAITGAIKDTAIEYDDIAYYAAEYFLKEHSDALMERYSLDEPPKNETALL--ESIG 236
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR-DFLELDIS 352
K KR VS V + + + IFI +R G+ G++ L+ +EL+I+
Sbjct: 237 K---KRGALVSGGRVNL----NKASAIFIHDYRSGTLGNITLETPKMIELEIA 282
>gi|156065401|ref|XP_001598622.1| hypothetical protein SS1G_00711 [Sclerotinia sclerotiorum 1980]
gi|154691570|gb|EDN91308.1| hypothetical protein SS1G_00711 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 265
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 114/215 (53%), Gaps = 22/215 (10%)
Query: 143 KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG 202
K+ P + T+ + H++ + + +++VG+PNVGKSS++NALR + + +GKA G
Sbjct: 28 KSKPDIQTILSLCKEHGLAHQS-LTGSRILIVGMPNVGKSSLLNALRMAGVNRGKAAFTG 86
Query: 203 PKAGVTRSVMSQVKI------SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLV 256
+ G+TR + S VKI + +Y++DTPG+ +P + + + ++LA +++D ++
Sbjct: 87 AQPGITRKIASGVKIVDPDPEAGTEGVYLVDTPGVFVPFVPDTDSMLKLALVGSVKDTII 146
Query: 257 GEINIADYILFYLN-RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSV 315
+ADY+LF++N + G Y ++ ++DIV L K +
Sbjct: 147 APTTLADYLLFHINLKVGGGVYKEYCG---ETNDIVEFLEAVCRKTGRLGKG-------- 195
Query: 316 RMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
PD A I+ +R+G+ G +LD +E+D
Sbjct: 196 -GVPDVEAAALWVIQRWRQGNLGKFVLDE--VEVD 227
>gi|299473288|emb|CBN77688.1| Mtg1, mitochondrial YlqF-like GTPase [Ectocarpus siliculosus]
Length = 445
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 148/351 (42%), Gaps = 74/351 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K I + LK VD+V EV D+R+PFT N L + V + ++VLNK DL N E
Sbjct: 78 MVKATKVIREKLKQVDMVFEVRDARIPFTSANEDLDKIVGPSKARLIVLNKADLSNQALE 137
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT---V 117
+ ++ KEQ + ++ R V K+L + R R ++TT
Sbjct: 138 QRVLQRF-KEQGKAA--VYACGR--TGTNVNKLLAWARE------RGARRGEFSTTGAIA 186
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
MVVG+PNVGKSS+IN LR
Sbjct: 187 MVVGMPNVGKSSLINLLR------------------------------------------ 204
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
GK++ + VG GVTR V S +I+ P +Y++DTPG+ +PR++
Sbjct: 205 --GKANRGGGGGGDGEGAKQVARVGAMPGVTRQV-SAFRIASNPPLYLVDTPGVMVPRVE 261
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYL--NRTGNYRYVDFFNLDEP--SDDIVML 293
+ G+ LA + D V + ++L + R+ R L P DD+ L
Sbjct: 262 SKTAGLFLALTRAVPDSAVPSDVLVGFMLRVVRSRRSSGARDRSVTALSAPRREDDMEAL 321
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV-ARIFIEHFRKGSFGSVMLD 343
L A++++ S + P+ + R ++ FR G FG + LD
Sbjct: 322 L--EAVERE--------SGAEGKPAPEARRICCRFLLDAFRDGQFGRITLD 362
>gi|444726797|gb|ELW67317.1| Mitochondrial GTPase 1 [Tupaia chinensis]
Length = 269
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 55/204 (26%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
++P + + ++ RYHR E + +MVVGVPNVGKSS+IN+LR H++KG
Sbjct: 110 VIPMVTELIESSHRYHRGENLDYCIMVVGVPNVGKSSLINSLRRQHLRKG---------- 159
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
T+ DHLVGE +ADY+L
Sbjct: 160 -------------------------------------------TVLDHLVGEETMADYLL 176
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEV 324
+ LN+ +RYV + L DDI +L A+K K + + + N + P+
Sbjct: 177 YTLNKQQLFRYVQHYGLAGACDDIERVLKSVAVKLGKTYKVKVLTGTGNVNVIQPNYPAA 236
Query: 325 ARIFIEHFRKGSFGSVMLDRDFLE 348
A+ F+ FR G G VMLD D L+
Sbjct: 237 AQDFLRTFRSGLLGPVMLDSDILQ 260
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 47/173 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFT---------------GRNHLLQQSVQNIRPM 45
M +GLK ++ LK VD +IEVHD+R+ FT GRN L ++++ +RP
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARISFTVQGKPLFESWHVPLSGRNPLFKETL-GLRPH 93
Query: 46 VLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105
+LVLNK DL + ++E Q+++P + + ++
Sbjct: 94 LLVLNKMDLAD-----------------LTE--------------QQVIPMVTELIESSH 122
Query: 106 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNM 158
RYHR E + +MVVGVPNVGKSS+IN+LR H++KG + L + ++D +
Sbjct: 123 RYHRGENLDYCIMVVGVPNVGKSSLINSLRRQHLRKGTVLDHLVGEETMADYL 175
>gi|328351560|emb|CCA37959.1| Probable tRNA-splicing endonuclease subunit sen54 [Komagataella
pastoris CBS 7435]
Length = 727
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 13/199 (6%)
Query: 151 LQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTR 209
+Q I + R H V++ G+PNVGKS+++N LR + + K V G + GVTR
Sbjct: 496 IQMIREKHDRMHPKPPLGVRVIITGMPNVGKSTLVNTLRKIGLNRTKNVARTGGQPGVTR 555
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
S +++ + P I + DTPG+ LP++ ++E M LA T++ + + +ADY+LF L
Sbjct: 556 STSEIIRVHQNPEILVYDTPGVFLPKVKDVETMMSLALVGTIKPIKIDPVMVADYLLFVL 615
Query: 270 N---RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVAR 326
N TG+ +Y + + P++DI LL K A + K +R + N +++ D +
Sbjct: 616 NLQDPTGS-KYRKY--IKHPTNDIYELLEKIAERIKRVRR----TKNGIQI--DEIGSSL 666
Query: 327 IFIEHFRKGSFGSVMLDRD 345
FI+ +++G G + D D
Sbjct: 667 HFIDEWKQGRMGKCLFDLD 685
>gi|402574090|ref|YP_006623433.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
gi|402255287|gb|AFQ45562.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
Length = 275
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 80/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VD+V+E+ D+R+P + RN +L + + + + +L+LNK DL N
Sbjct: 10 MAKTRRLLTEQLKWVDVVLELADARIPVSSRNPMLHKLLGS-KARLLLLNKADLANPNWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S K KE + V T+ G+++I+P L+ +
Sbjct: 69 SKWV-KYLKESGPVYAVSATSG-----VGIKQIVPELERM-------------------- 102
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ A ++ +KG I M R VM+VG+PN+G
Sbjct: 103 ----------VLAKQARQAEKG-----------IRQQMIR----------VMIVGIPNIG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L G VG K GVTR V+I E+ + +LDTPG+ P+ D+LE
Sbjct: 132 KSSLINQLTG-----GAQAKVGNKPGVTRG-NQWVRIHER--VELLDTPGMLWPKFDDLE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAA ++D + ++ +++ + N+ + + + + EP + +I
Sbjct: 184 VGRKLAALGAIKDDVFDIEELSTWVIEWFNQY-SPDSLARYKISEPE------VTLESIG 236
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ KR + V DT + ARIF+ R G GS+ +D
Sbjct: 237 R---KRGCLIHGGRV----DTLKAARIFLRDLRMGQLGSITMD 272
>gi|388581262|gb|EIM21571.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 375
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 20/192 (10%)
Query: 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIY 224
EV V++ G+PNVGKS+ +NALR + KGKA G GVTR + VKI+E P +Y
Sbjct: 133 EVPKLNVLITGMPNVGKSTFLNALRRVGVHKGKAAITGSDPGVTRKLTGTVKINENPNVY 192
Query: 225 ILDTPGISLPRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF 280
I DTPGI +P + LE G++LA + ++ L+ I DY+LF LN + F
Sbjct: 193 IYDTPGIMVPFLGHDEQGLEMGLKLALTSGIKPDLIDTETILDYLLFKLNLRDPKSHPPF 252
Query: 281 ---FNLDE---PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRK 334
L E P++DI LL + ++ V ++ F + R
Sbjct: 253 TGQLPLGETYPPTNDIHTLLEDLGRRVGALRKGGHVDMDNASQF---------LMNAMRN 303
Query: 335 GSFGSVMLDRDF 346
G FG LD DF
Sbjct: 304 GKFGRWTLD-DF 314
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 22/156 (14%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQN----------IRPMVLVLN 50
M +G++ + + L +D++IE D+R+P TG N+ ++ ++N + ++V
Sbjct: 23 MTKGMRMMTEQLNTIDVIIEARDARIPLTGINYEFEKMIKNGWSERAKSGGLTERIIVYT 82
Query: 51 KRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHR 109
KRDL K+E + ++ V+FTN +N + + VQK L ++ + H
Sbjct: 83 KRDLAEEKYERPLTRSLKSLTGQ--HVVFTNSKNDRDPRIVQKQLVSI-------AKNH- 132
Query: 110 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
EV V++ G+PNVGKS+ +NALR + KGKA
Sbjct: 133 -EVPKLNVLITGMPNVGKSTFLNALRRVGVHKGKAA 167
>gi|374997103|ref|YP_004972602.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
gi|357215469|gb|AET70087.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
Length = 277
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 150/345 (43%), Gaps = 84/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E+ LK VD+V+E+ D+R+P + RN +L + + N + +L+LNK DL
Sbjct: 10 MAKTRRLLEEQLKWVDVVLELADARIPASSRNPMLHKLLGN-KTRLLLLNKADLAAPNET 68
Query: 61 SLIEEKVRKEQSHISEV--IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
S K +H+ E +F G+++I+P L+ +
Sbjct: 69 S-------KWLTHLKESSPVFAVSATKGM-GIKQIVPELEQM------------------ 102
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ A ++ KG I P L M+VG+PN
Sbjct: 103 ------------VRAKQAKQAAKG----IRPQL-----------------IKAMIVGIPN 129
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+GKSS+IN L G V V K GVTR V+I E+ + +LDTPG+ P+ D+
Sbjct: 130 IGKSSLINQLTG-----GAQVKVANKPGVTRG-NQWVRIHER--VELLDTPGMLWPKFDD 181
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
L+ G +LAA ++D + +A ++L +LN + E S+ + L +
Sbjct: 182 LDVGRKLAALGAVKDDVFDLEELAAWVLEWLNLNSPNSLSRYKA--EDSEVTLESLGR-- 237
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR + V DT + ARIF++ R G G V +D
Sbjct: 238 ------KRGCLIHGGRV----DTLKAARIFLKELRTGQLGPVTMD 272
>gi|297739639|emb|CBI29821.3| unnamed protein product [Vitis vinifera]
Length = 362
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 121/274 (44%), Gaps = 67/274 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ S+ R V+ LNK+DL N
Sbjct: 17 MAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPSLSGKR-RVIALNKKDLANP--- 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT---- 116
+ + +H F +C+ +C + + + EV +
Sbjct: 73 -----NIMHKWTH----YFDSCKQ-DCISINAHSRSSVKKLLELVELKLREVISREPTLL 122
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
VMVVGVPNVGKS++IN++ H P+
Sbjct: 123 VMVVGVPNVGKSALINSI---HQIATSRFPV----------------------------- 150
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
+K K VGP GVT+ + + KI+ +P IY+LDTPG+ +P I
Sbjct: 151 ----------------QEKMKRATVGPLPGVTQDI-AGFKIAHQPSIYVLDTPGVLVPSI 193
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
++E G++LA +++D +VGE IA Y+L LN
Sbjct: 194 PDIETGLKLALAGSVKDSVVGEERIAQYLLAVLN 227
>gi|381204932|ref|ZP_09912003.1| GTPase YlqF [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 294
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 88/352 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ + +K VD+VIE+ D+R+P T +N LQ + N +P +++ NK L +S
Sbjct: 22 MRKALRGVGDQIKRVDVVIELRDARLPITSQNPDLQNLLNN-KPSLILFNKSGLADSSQI 80
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K + E + +F + + KG+ +I+P I +R+ +
Sbjct: 81 KKWESKFKNESTK--PFVFVDVKK--RKGLSQIIPI--SIRLVQSRWENLK--------- 125
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++G P+L +MV+G+PNVG
Sbjct: 126 -------------------RRGIRPPVL---------------------RLMVIGIPNVG 145
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INAL ++G A GPK GVTR V L LDTPGI P+I N
Sbjct: 146 KSSLINAL----ARRG-ATQTGPKPGVTRHPEWIVLGQNAEL---LDTPGILWPKIQNTI 197
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN--------LDEPSDDIVM 292
G+ L +++D +VG ++++Y++ + G R+ + F+ + S +I+
Sbjct: 198 DGLNLTLIGSIRDEIVGAESLSNYLI----QIGKIRFPEKFSERYSIKGYESQSSQEILH 253
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+AK KR F + D V+ + + FR+G FG + LD+
Sbjct: 254 QIAK--------KRGFFRTGGHA----DIQRVSEMLLCDFREGLFGPINLDQ 293
>gi|392394720|ref|YP_006431322.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525798|gb|AFM01529.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 276
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 153/344 (44%), Gaps = 80/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ VD+VIE+ D+R+P + RN LLQ+ + + +P +++LNK DL +
Sbjct: 10 MAKAKRLLVEQLRWVDVVIELGDARLPESSRNPLLQEMLGD-KPKIVILNKVDLADPYWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K+R + S + V T GV KI+P ++ + H+ E +
Sbjct: 69 EIWTRKLR-QSSPVLAVSATGG-----AGVGKIVPEVERLM-----AHKIEKWTA----- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+R+ ++ VM+ G+PN G
Sbjct: 113 -----------KGIRARSIR------------------------------VMIAGIPNCG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS++N L S K G K GVTR ++I ++ + +LDTPG+ P+ ++ E
Sbjct: 132 KSSLVNNLIGSAKAK-----TGNKPGVTRG-NQWIRIHDR--VELLDTPGLLWPKFEDPE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L A ++D ++ ++ ++L +L NY L ++D+ L + +
Sbjct: 184 VGRKLGAVGAIRDEVLNLEELSLWVLEHLKE--NYPEA----LKRYTEDVQGLDLEGIGR 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR V V DT + A+IFI FR GS G LDR
Sbjct: 238 ----KRGCLVKGGQV----DTLKAAQIFIREFRAGSLGKFTLDR 273
>gi|225683386|gb|EEH21670.1| mitochondrial GTPase [Paracoccidioides brasiliensis Pb03]
Length = 350
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 76/343 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KHESL 62
L+ ++ L +D VIE D R+P T N L ++++ + ++ KRDL + E+
Sbjct: 29 ALERMKNMLSTIDHVIECRDFRIPATSINPLFEEALGE-KSRWIIYTKRDLGGDLRLENQ 87
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
EK+ + + S+V F + N N I+P ++ + + H+ + ++VVG+
Sbjct: 88 KREKMIQRWNRGSKVFFASQFNNNT-----IVPIVKSLKRHPFNIHK--ITGVRILVVGM 140
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKSS+INALR MK+
Sbjct: 141 PNVGKSSLINALRKYAMKR----------------------------------------- 159
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLE 240
K K G GVTR V + +KI E+ +Y+ DTPG+ +P + + E
Sbjct: 160 ------------KNKVARTGADPGVTRRVGTGIKIIERSRGSVYVHDTPGVFVPYMPDSE 207
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++L C L+ ++ I +ADY+L+ +N Y + P++DIV L A K
Sbjct: 208 SMLKLGICGCLKHSIIPIITLADYLLYQINLHKPSIYAKY---SPPTNDIVHFLEAFAAK 264
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ PD A I F+ G G+ ++D
Sbjct: 265 TGSLAKG---------GIPDMDIAADKMIHMFQNGKLGTFIMD 298
>gi|326516022|dbj|BAJ88034.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 370
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 59/270 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV D+R+P + N LQ + R +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQPVLAAKR-RILALNKKDLANP--- 85
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + QS + I N + N + L + + R + VMVV
Sbjct: 86 NIMNMWLDHFQSRKQDCISLNAHSSNS------INQLLGLVELKLRESILKEPTLLVMVV 139
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GVPNVGKS++INA+ HR + N+ V
Sbjct: 140 GVPNVGKSALINAI---------------------------HR--IANSRFPV------- 163
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+ +K+ + VGP GVT+ + + KI+ +P IY+LDTPG+ +P I ++E
Sbjct: 164 ---------NDKIKRAR---VGPLPGVTQDI-AGYKIASQPSIYVLDTPGVLVPSIPDME 210
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLN 270
G++LA ++D +VGE IA Y+L LN
Sbjct: 211 TGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
>gi|406602893|emb|CCH45557.1| hypothetical protein BN7_5139 [Wickerhamomyces ciferrii]
Length = 349
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 155/345 (44%), Gaps = 79/345 (22%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ L + + +D+V EV D+R P + RN L ++ + N +P V++ +K+DL S
Sbjct: 30 KALNKLTQIAPQLDLVFEVRDARAPLSTRNVLFEKILGN-KPKVVLYSKKDL------ST 82
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
I+ ++ +T++H+ E + M V
Sbjct: 83 IDVEL------------------------------------LTKWHKDEKF----MFVNC 102
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+ ++ I + +H ++ + P L +++ G+PNVGKS
Sbjct: 103 KSRTDATNIIEIAKAHYEEMEPRPPL-------------------GLRMIITGMPNVGKS 143
Query: 183 SIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
+++N LR+ + + V G + GVTRS S +KI+E P I + DTPG+ +PR++N E
Sbjct: 144 TLVNTLRAVGLNSTRKVAKTGGQPGVTRSTSSIIKINENPEILLYDTPGVFIPRVENSER 203
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK- 300
+ L+ + +V + ADY+L+ +N Y + L P++D+ LL + K
Sbjct: 204 MIVLSLVGAVSPTIVDPVIQADYLLYLINLQNPTLYSQY--LKTPTNDVYTLLRAISKKI 261
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
KK+ R D F + G A +I+ F++G G + D D
Sbjct: 262 KKYNSRTKD--------FDEKG-TALHWIDGFKQGKTGRLKFDVD 297
>gi|288553082|ref|YP_003425017.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
gi|288544242|gb|ADC48125.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
Length = 285
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 154/348 (44%), Gaps = 81/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL----IN 56
M + +++ + LK +D+VIE+ D+R+P + RN ++ + V +P +++LNK DL +
Sbjct: 10 MAKARREVTEKLKLIDVVIELVDARLPLSSRNPMMDEIVGQ-KPRLVLLNKADLADPHMT 68
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
K EEK + V+ N + KGV+KI + ++
Sbjct: 69 KKWAGYFEEKG-------ATVLAINAQT--GKGVEKISGACRKLA--------------- 104
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
S +I +S MK R R M++G+
Sbjct: 105 -----------SPLIEKWKSKGMK------------------PRAIRG-------MILGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS++IN L S + K VG + GVT+ +K+ L +LDTPGI P+
Sbjct: 129 PNVGKSTLINRLASKKIAK-----VGDRPGVTKK-QQWIKVGNDEL-ELLDTPGILWPKF 181
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
++ G RLAA ++D L+ +IA ++L Y+ R + + L+E ++ + L
Sbjct: 182 EDQVIGYRLAATGAIKDELLDFQDIALFVLNYMKDHYPERIAERYKLEEVPEEGLALF-- 239
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
AI K KR + + D + A I + R G+ G V L++
Sbjct: 240 DAIGK---KRGCLLPGGYI----DYDKAAEIILRELRSGTLGQVTLEQ 280
>gi|374582895|ref|ZP_09655989.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
gi|374418977|gb|EHQ91412.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
Length = 276
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 82/339 (24%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
+ LK VD+V+E+ D+R+P + RN +L + + N + +L+LNK DL +S S K K
Sbjct: 19 EQLKWVDVVLELADARIPASSRNPMLHKLLGN-KARLLLLNKADLADSNWTSKWL-KYLK 76
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
E S + V T G+++I+P L+ +
Sbjct: 77 ESSPVYAVSATTG-----VGIKQIVPELERM----------------------------- 102
Query: 130 IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+ A ++ +KG I M R VM+VG+PN+GKSS+IN L
Sbjct: 103 -VLAKQAKQAQKG-----------IRPQMIR----------VMIVGIPNIGKSSLINQLT 140
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
G VG K GVTR V+I E+ + +LDTPG+ P+ D+L+ G +LAA
Sbjct: 141 G-----GAQAKVGNKPGVTRG-NQWVRIHER--VELLDTPGMLWPKFDDLDVGRKLAALG 192
Query: 250 TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD 309
++D + ++ +I+ +LN + N D + ++ KR
Sbjct: 193 AIKDDVFDIEELSIWIIDWLNLHSPSSLARYQNED----------TEVTLEGLGRKRGCL 242
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+ + DT + A+IF+ R G G + + D+LE
Sbjct: 243 IHGGRI----DTLKAAQIFLRELRMGQLGPITM--DYLE 275
>gi|399155736|ref|ZP_10755803.1| GTPase YlqF [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 306
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 84/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K++ K LK VD+V+E+ D+R+P + NH ++ +Q + +L+ NK +L +
Sbjct: 30 MLKATKELAKQLKRVDVVLEMRDARIPVSSANHDFEKLLQQ-KKRILLFNKTNLAD---- 84
Query: 61 SLIEEKVRKEQSHISEV----IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ RK +++ ++ +F + N + +Q+ILP ++R E +
Sbjct: 85 ---EDTTRKWKAYFKKMDTPSLFVDALN--KQNLQEILP--------LSRKLMQEKW--- 128
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
S+ K+G P L +++ G+
Sbjct: 129 -------------------SNFRKRGIRPPSL---------------------KLLITGI 148
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS+IN + + KA GP GVT+ +K+ + + +LDTPGI P+I
Sbjct: 149 PNVGKSSLIN-----RLSRRKAAETGPTPGVTKH-QDWIKLGKD--VELLDTPGILWPKI 200
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM--LL 294
+N E G+RL ++D +VG ++DY+L L + + + L E + +++ LL
Sbjct: 201 ENREAGLRLTITGAIKDSIVGTSLLSDYLLGILMLKAPEQLLQNYQLTEENLELLPADLL 260
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K A K+ K + D + + FR G G + D
Sbjct: 261 EKIAEKRGCLKGGGAI---------DHPRAESLVLRDFRAGKLGRLSFD 300
>gi|89895336|ref|YP_518823.1| hypothetical protein DSY2590 [Desulfitobacterium hafniense Y51]
gi|89334784|dbj|BAE84379.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 276
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 150/349 (42%), Gaps = 92/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ VD+VIE+ D+R+P + RN LLQ+ + + +P +++LNK DL +
Sbjct: 10 MAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEMLGD-KPKIIILNKVDLADPYWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K+R+ ++ N GV KI+P ++ + H+ E +
Sbjct: 69 EIWTRKLRQANPVLA------VSATNGAGVGKIVPEVERLM-----AHKIEKWTA----- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+R+ ++ VM+VG+PN G
Sbjct: 113 -----------KGIRARSIR------------------------------VMIVGIPNCG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS++N L S K G K GVTR ++I E+ + +LDTPG+ P+ ++ E
Sbjct: 132 KSSLVNNLIGSAKAK-----TGNKPGVTRG-NQWIRIHER--VELLDTPGLLWPKFEDPE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYV-DFFNLDEPSDDIVMLL 294
G +L A ++D ++ ++ ++L L NY RY D NLD
Sbjct: 184 VGKKLGAVGAIRDEVLNLEELSLWVLEQLKE--NYPEALTRYTEDVQNLD---------- 231
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I + KR V V D + A+IF+ FR GS G LD
Sbjct: 232 -LEGIGR---KRGCLVKGGQV----DILKAAQIFLREFRAGSLGKFTLD 272
>gi|423074823|ref|ZP_17063547.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
hafniense DP7]
gi|361854213|gb|EHL06301.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
hafniense DP7]
Length = 267
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 92/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ VD+VIE+ D+R+P + RN LLQ+ + + +P +++LNK DL +
Sbjct: 1 MAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEMLGD-KPKIIILNKVDLADPYWT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K+R+ ++ N GV KI+P ++ + H+ E +
Sbjct: 60 EIWTRKLRQANPVLA------VSATNGAGVGKIVPEVERLM-----AHKIEKWTA----- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+R+ ++ VM+VG+PN G
Sbjct: 104 -----------KGIRARSIR------------------------------VMIVGIPNCG 122
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS++N L S K G K GVTR ++I E+ + +LDTPG+ P+ ++ E
Sbjct: 123 KSSLVNNLIGSAKAK-----TGNKPGVTRG-NQWIRIHER--VELLDTPGLLWPKFEDPE 174
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYV-DFFNLDEPSDDIVMLL 294
G +L A ++D ++ ++ ++L L NY RY D NLD
Sbjct: 175 VGKKLGAVGAIRDEVLNLEELSLWVLEQLKE--NYPEALTRYTEDVQNLD---------- 222
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ KR V V D + A+IF+ FR GS G LD
Sbjct: 223 ----LEGIGRKRGCLVKGGQV----DILKAAQIFLREFRAGSLGKFTLD 263
>gi|226287003|gb|EEH42516.1| mitochondrial GTPase [Paracoccidioides brasiliensis Pb18]
Length = 350
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 144/343 (41%), Gaps = 76/343 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KHESL 62
L+ ++ L +D VIE D R+P T N L ++++ + ++ KRDL + E+
Sbjct: 29 ALERMKNMLSTIDHVIECRDFRIPATSINPLFEEALGE-KSRWIIYTKRDLGGDLRLENQ 87
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
EK+ + + S+V F + N N I+P ++ + + H+ + ++VVG+
Sbjct: 88 KREKMIQRWNRGSKVFFASQFNNNT-----IVPIVKSLKRHPFNIHK--ITGVRILVVGM 140
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKSS+INALR MK+
Sbjct: 141 PNVGKSSLINALRKYAMKR----------------------------------------- 159
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISLPRIDNLE 240
K K G GVTR V + +KI E+ +Y+ DTPG+ +P + + E
Sbjct: 160 ------------KNKVARTGADPGVTRRVGTGIKIIERSRGSVYVHDTPGVFVPYMPDSE 207
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++L C L+ ++ I +ADY+L+ +N Y + P++DIV L A K
Sbjct: 208 SMLKLGICGCLKHSIIPIITLADYLLYQINLHKPSIYAKY---SPPTNDIVHFLEAFAAK 264
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ P+ A I F+ G G+ ++D
Sbjct: 265 TGSLAKG---------GIPNIDIAADKMIRMFQNGKLGTFIMD 298
>gi|167527406|ref|XP_001748035.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773453|gb|EDQ87092.1| predicted protein [Monosiga brevicollis MX1]
Length = 506
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 157 NMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK 216
++ R + +++ G+PNVGKS++INA+R + +GK G + GVTR+V + ++
Sbjct: 98 DLADASREDAPELRLLIAGIPNVGKSTLINAMRQTFAGRGKCAITGDQPGVTRAVQTSIR 157
Query: 217 ISEKPLIYILDTPGISLPRIDNLECGMRLAA---------CATLQDHLVGEINIADYILF 267
I + P +Y++DTPGI LP ++N + M+LAA C + + +AD
Sbjct: 158 IHDDPPVYVIDTPGIMLPNVENPDDAMKLAAIDARLWVDSCRATTMPITRAVTLADRAPR 217
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSS 312
+ +RYV++F L PSD++ ++L A + ++ + ++
Sbjct: 218 IVTAFA-FRYVEYFGLPGPSDELHVVLPYVAQRVGALRKVLEAAT 261
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 52/142 (36%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL+ +++ +++ D ++E+HD+R+P TGRN P +L+LNK DL ++ E
Sbjct: 51 GLRRMQQLMRSCDCILEIHDARLPMTGRNPKFDHLAG--LPRILLLNKADLADASREDAP 108
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E + +++ G+P
Sbjct: 109 ELR--------------------------------------------------LLIAGIP 118
Query: 124 NVGKSSIINALRSSHMKKGKAV 145
NVGKS++INA+R + +GK
Sbjct: 119 NVGKSTLINAMRQTFAGRGKCA 140
>gi|310658878|ref|YP_003936599.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
gi|308825656|emb|CBH21694.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
Length = 328
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 155/344 (45%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KH 59
M + + I +++K VD+V+E+ D+R P++ N + V+N+ P V+VLNK DL +S K
Sbjct: 53 MKKTKEQILENIKLVDVVLEIVDARAPYSTSNPDIDDMVKNL-PKVVVLNKEDLADSNKT 111
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ IE K + H S +I + KG+ ++L +L + S ++ Y + E
Sbjct: 112 QQWIE--YYKTKGHESAMINSLT----GKGLNELLASLNNKSKDL--YKKLE-------- 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
K ALR VMVVG+PNV
Sbjct: 156 ------SKGRRKRALR-----------------------------------VMVVGIPNV 174
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKSSIIN + K+ G + GVT+ VK+ K + +LDTPG+ P+I++
Sbjct: 175 GKSSIINRIVGK-----KSAQTGDRPGVTKG-KQWVKL--KGDLELLDTPGVLWPKIEDQ 226
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
M+LA +++D ++ IA ++ YL + + F LD+ D+ + I
Sbjct: 227 SVAMKLAFLGSIKDQVMEIEEIAMELIKYLKEIKPQIFSERFELDKDISDMEAIAIADFI 286
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
FKR + + N V F ++ + FR G G++ L+
Sbjct: 287 A---FKRGYILPGNQVDYF----RLSSSLLMEFRAGKLGTITLE 323
>gi|339009353|ref|ZP_08641925.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
gi|338773831|gb|EGP33362.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
Length = 298
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 150/348 (43%), Gaps = 82/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VD+VIE+ D+R+P + RN ++ + V +P +++LNK DL +
Sbjct: 10 MAKARRQVTEKLKQVDVVIELLDARLPLSSRNPMIDEIVAE-KPRLILLNKADLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ RY + + T
Sbjct: 66 --------------------------------------SVTEMWIRYFKEQGLRT----- 82
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTL-QHISDNM--TRYHRTEVYNTT-VMVVGV 176
+P I+AL G+ V LP L Q ++ +M R R + +M++G+
Sbjct: 83 -LP-------IDAL------SGRGVNKLPELCQELASDMLQKRADRGMLARAVRIMILGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS+IN + K G + VT+S VK+ + + +LDTPGI P+
Sbjct: 129 PNVGKSSLIN-----RLAKRSVAQTGDRPAVTKS-QQWVKMGDT--LELLDTPGILWPKF 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
++ G+RLAA ++D L+ +A Y + Y+ R D F L + +D V LL
Sbjct: 181 EDQMVGLRLAASGAIKDELIDFSEVALYAVRYMMHYYPERLKDRFKLTDLPEDGVELL-- 238
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
I K KR S + D + + + + R G G + L+R
Sbjct: 239 EMIGK---KRGCMASGGYI----DYDKASELLLRELRSGKIGQISLER 279
>gi|262274122|ref|ZP_06051934.1| 50S ribosomal subunit maturation GTPase RbgA [Grimontia hollisae
CIP 101886]
gi|262221932|gb|EEY73245.1| 50S ribosomal subunit maturation GTPase RbgA [Grimontia hollisae
CIP 101886]
Length = 314
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 82/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+PF+ N ++++ ++ +P++ VLNKRDL + +
Sbjct: 13 MHKARKEIEEVIPKIDVIIEVLDARIPFSSENPMIRR-IRKDKPVIKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E + KE +GV+ + T +H S+
Sbjct: 72 VLWLEHLEKE-----------------QGVKAMAITTEHASE------------------ 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPNV 179
+ I++ R K P HR E+ N M++G+PNV
Sbjct: 97 ------VNKIMDLCR-------KLAP---------------HREEIGKNIRTMIMGIPNV 128
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K G + VTR Q +I+ + + + DTPGI P+++N
Sbjct: 129 GKSTIINTLAGRVVAK-----TGNQPAVTRQ---QQRINLQNGVVLSDTPGILWPKVENP 180
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G RLAA ++D + +A Y + YL + +N++E + V L+
Sbjct: 181 HSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPELLKKRYNIEELPETEVELMEAIGE 240
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ + + D + + I I R G+ G + L+
Sbjct: 241 KRGCLRSGGRI---------DLHKASEILINDLRNGALGLITLE 275
>gi|219669770|ref|YP_002460205.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
gi|219540030|gb|ACL21769.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
Length = 276
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 92/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ VD+VIE+ D+R+P + RN LLQ+ + + +P +++LNK DL +
Sbjct: 10 MAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEMLGD-KPKIIILNKVDLADPYWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K+R+ ++ + GV KI+P ++ + H+ E +
Sbjct: 69 EIWTRKLRQSNPVLAVSATSGA------GVGKIVPEVERLM-----AHKIEKWTA----- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+R+ ++ VM+VG+PN G
Sbjct: 113 -----------KGIRARSIR------------------------------VMIVGIPNCG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS++N L S K G K GVTR ++I E+ + +LDTPG+ P+ ++ E
Sbjct: 132 KSSLVNNLIGSAKAK-----TGNKPGVTRG-NQWIRIHER--VELLDTPGLLWPKFEDPE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYV-DFFNLDEPSDDIVMLL 294
G +L A ++D ++ ++ ++L L NY RY D NLD
Sbjct: 184 VGKKLGAVGAIRDEVLNLEELSLWVLEQLKE--NYPEALTRYTEDVQNLD---------- 231
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I + KR V V D + A+IF+ FR GS G LD
Sbjct: 232 -LEGIGR---KRGCLVKGGQV----DILKAAQIFLREFRAGSLGKFTLD 272
>gi|213402317|ref|XP_002171931.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275]
gi|338818319|sp|B6JW87.1|MTG1_SCHJY RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|211999978|gb|EEB05638.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275]
Length = 328
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG+PNVGKSS++NALR + + + K VG GVTR+V V++ E +Y++DTPG
Sbjct: 136 VFVVGMPNVGKSSVMNALRHASLHRRKVAVVGSHPGVTRNVGEVVRLFEGKNVYMVDTPG 195
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I LP I E ++ A ++D + + DY+L+ LN Y L P++D+
Sbjct: 196 IMLPTILQPEDAIKFALVHAMKDGRLHNAVVVDYLLYRLNLIDPNTYT---RLSSPTNDV 252
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L AA+ + V+ + +A ++ +R G FG+ +LD
Sbjct: 253 STFLHNAAVHTGKLGKGGTVNDDL---------IASYVLQLYRTGFFGAFVLD 296
>gi|164657139|ref|XP_001729696.1| hypothetical protein MGL_3240 [Malassezia globosa CBS 7966]
gi|159103589|gb|EDP42482.1| hypothetical protein MGL_3240 [Malassezia globosa CBS 7966]
Length = 405
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 151/397 (38%), Gaps = 105/397 (26%)
Query: 17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPM-------------------VLVLNKRDLINS 57
+VIEV D+R+PFT N ++++Q+ ++V KRD I
Sbjct: 9 LVIEVRDARLPFTSINPKFEEALQSAPSAKERVRISSQTYMSGWAARRLVVYTKRDQIER 68
Query: 58 KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
E I + K +H V+F + R N +Q + D + R ++ +
Sbjct: 69 AWEGPIVRALAK-HTHDDHVMFVDTRKKN---------DVQRVYDWVC--ARAKLLSKAA 116
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
GV N++R SH+ RY T ++VVG+P
Sbjct: 117 AKAGVRQAS-----NSMRHSHL----------------SGAARYTSTPETGVRLLVVGMP 155
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS------------------- 218
NVGKSS++NALR K A P G TR V V+I+
Sbjct: 156 NVGKSSLLNALRFVGTGKKSAASTHPHPGHTRKVTGTVRITPSAPSLAQLDMSEGIDMKR 215
Query: 219 -------EKPLIYILDTPGISLPRIDNLECG-----MRLAACATLQDHLVGEINIADYIL 266
P +Y+ DTPGI +P + + E G ++LA ++ L +ADY+L
Sbjct: 216 LVAREAHRPPSVYVYDTPGIMVPFLGSAEHGGPERALKLAITGCMKQTLFSAEELADYLL 275
Query: 267 FYLNRTGNYRYVDFFNLD----------EP--SDDIVMLLAKAAIKKKWFKRAFDVSSNS 314
F +NR Y Y D EP +DD L+ A K ++ + S
Sbjct: 276 FRMNR--RYLYARAHGSDALPAYTALMSEPKLTDDNTEFLSCVAGKAPGARQQGGTMNLS 333
Query: 315 VRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDI 351
V A I F++G GS LD E D+
Sbjct: 334 V--------AAEFVISQFQRGVLGSRELDLALNEEDL 362
>gi|358396175|gb|EHK45556.1| hypothetical protein TRIATDRAFT_197115 [Trichoderma atroviride IMI
206040]
Length = 335
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 159 TRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVK 216
T Y + ++VG+PNVGKS+++NALR S +K K G +AGVTR + + V+
Sbjct: 117 TAYEVDSITGLCALIVGMPNVGKSTLLNALRKSGTLGRKTKVAKTGDQAGVTRKIGTSVR 176
Query: 217 ISEK-------PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
+ E +Y+LD+PG+ +P +++ E M+++ ++ L+ + +ADY+L+ +
Sbjct: 177 VVEPEERGGVGAGVYVLDSPGVFMPYVEDGEAMMKISLVQGIKKGLIADEILADYLLYKM 236
Query: 270 NRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFI 329
N Y + EP++D+ L+ A KR + + V PD E A +
Sbjct: 237 NLWDPRLYGRYC---EPTNDVQEFLSAVA------KRDGKLKAGGV---PDMEESAARVL 284
Query: 330 EHFRKGSFGSVMLD 343
+RKG G +LD
Sbjct: 285 SEWRKGKLGKYVLD 298
>gi|297617099|ref|YP_003702258.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
lipocalidus DSM 12680]
gi|297144936|gb|ADI01693.1| ribosome biogenesis GTP-binding protein YlqF [Syntrophothermus
lipocalidus DSM 12680]
Length = 286
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 146/339 (43%), Gaps = 74/339 (21%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+++ K VD+VIEV D+R P + N L V+ +P++ VLNK DL + E
Sbjct: 15 REIQENAKVVDMVIEVVDARAPLSTTNPDLPHLVRG-KPIIKVLNKADLAD-------ER 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+ R+ F + N G V ++ G+P+V
Sbjct: 67 ETRR---------FISFFQKNGIGA---------------------VAADSLRGKGLPDV 96
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
+ A+ + P+ TL R V +M+ G+PNVGKSS +
Sbjct: 97 -----VRAVERVY------APLAKTLLE--------KRQRVRPARIMIAGLPNVGKSSFL 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N+L + K AVP GVTR ++I E I +LDTPG+ P+++N E G +L
Sbjct: 138 NSLAGKRVVKTGAVP-----GVTRG-RQWIRIKEG--IELLDTPGVMWPKVENDEQGTKL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
A A + + + +A Y++ L + + L+ + LL + K+ +F
Sbjct: 190 ALLAVVGEKAYEDEAVACYLISVLKHRKPEMLKERYRLESWDGEPGELLEEIGGKRGFFL 249
Query: 306 RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
R V D + AR +E FRKG G + LDR
Sbjct: 250 RGGTV---------DLNKTARAVLEDFRKGGLGRLTLDR 279
>gi|330840129|ref|XP_003292073.1| hypothetical protein DICPUDRAFT_89665 [Dictyostelium purpureum]
gi|325077708|gb|EGC31403.1| hypothetical protein DICPUDRAFT_89665 [Dictyostelium purpureum]
Length = 370
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 32/192 (16%)
Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
+PNVGKSS IN++RS+ K+ GP GVT+ ++ K + P I+I+D+PGI +
Sbjct: 158 TSLPNVGKSSFINSIRSAS-NMSKSAKTGPLPGVTKE-LTGFKCCDDPSIFIVDSPGIMI 215
Query: 234 P-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE------- 285
P +D E + LA + + +V + +AD++LF LN + N++Y++ F +
Sbjct: 216 PGNLDYDETTLTLALLNCISERIVSQTTLADFLLFKLNSSSNFKYLNLFKENGEGNQNTD 275
Query: 286 -------------PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHF 332
P+DDI L A + K + SSN+ PD + FI +
Sbjct: 276 ADNNNNNNNQEILPTDDIDQFLNMIAKRFKIY------SSNNK---PDLEMASVFFISQY 326
Query: 333 RKGSFGSVMLDR 344
R+G G+ LDR
Sbjct: 327 REGKLGNFTLDR 338
>gi|225441868|ref|XP_002284232.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Vitis vinifera]
Length = 377
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 7/106 (6%)
Query: 171 VMVVGVPNVGKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIY 224
VMVVGVPNVGKS++IN++ R +K K VGP GVT+ + + KI+ +P IY
Sbjct: 138 VMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDI-AGFKIAHQPSIY 196
Query: 225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
+LDTPG+ +P I ++E G++LA +++D +VGE IA Y+L LN
Sbjct: 197 VLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLN 242
>gi|340515780|gb|EGR46032.1| GTP-binding protein [Trichoderma reesei QM6a]
Length = 335
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 21/182 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISE-------KP 221
++VG+PNVGKS+++NALRSS + K G +AGVTR + + V++ E
Sbjct: 129 ALIVGMPNVGKSTLLNALRSSGTTGRTNKVAKTGDQAGVTRKIGTSVRVVEPEERGGVGA 188
Query: 222 LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
+Y+LD+PG+ +P +++ E M+++ ++ L+ + +ADY+L+ +N Y +
Sbjct: 189 GVYVLDSPGVFVPYVEDGETMMKISLVQGIKKGLIADEILADYLLYKMNLWDPQIYNRYC 248
Query: 282 NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM 341
+ P++DI LA A KR + + V PD GE A + +RKG G +
Sbjct: 249 D---PTNDIEEFLAAVA------KRDGKLKAGGV---PDMGESAARVLSEWRKGKLGRYV 296
Query: 342 LD 343
LD
Sbjct: 297 LD 298
>gi|225441866|ref|XP_002284228.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Vitis vinifera]
Length = 376
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 7/106 (6%)
Query: 171 VMVVGVPNVGKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIY 224
VMVVGVPNVGKS++IN++ R +K K VGP GVT+ + + KI+ +P IY
Sbjct: 137 VMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDI-AGFKIAHQPSIY 195
Query: 225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
+LDTPG+ +P I ++E G++LA +++D +VGE IA Y+L LN
Sbjct: 196 VLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLN 241
>gi|352517745|ref|YP_004887062.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
gi|348601852|dbj|BAK94898.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
Length = 282
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 91/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + +K+VDIV E+ D R+P + RN +L + +Q +P ++++NK DL +
Sbjct: 10 MAKAKRQVSEKIKHVDIVFELVDGRLPISSRNPMLDEILQQ-KPRLVLINKADLADPAQ- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNC--RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+K +++ +E + + + KG + ILP
Sbjct: 68 ------TKKWETYFNEQGYAALAINSQDNKGSKSILPKT--------------------- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
K ++ L+ K K I MV+G+PN
Sbjct: 101 --------KEALAEKLQREQEKGLKPRAI----------------------RAMVIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L M + G K GVT+ Q I K + +LDTPGI P+ ++
Sbjct: 131 VGKSTLLNRLAGKKMAQ-----TGNKPGVTKG---QQWIRYKKDLELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP-----SDDIVML 293
E G +LA ++D L + +IA Y L + + + D + L + + +++ML
Sbjct: 183 QEIGKKLALTGAIKDQLFHQDDIAIYALEFFKQFYPEQLADRYQLTQEDLAFSTAELLML 242
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ KK+ F+ +D S + I R+G G LDR
Sbjct: 243 IT----KKQGFQDDYDKGSQRI-------------IHDVREGKLGKYTLDR 276
>gi|331269648|ref|YP_004396140.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
gi|329126198|gb|AEB76143.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
BKT015925]
Length = 280
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VDIVIE+ D+R+ + N + +N +P +++LNK DL E
Sbjct: 10 MAKTRREIKENLKFVDIVIEIRDARIVKSSANPDIDDICKN-KPRIILLNKSDL---SEE 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E ++K + V NC KG+ I P I+D + + H +
Sbjct: 66 KVTKEWIKKLSNEFIRVASVNC--VTGKGLNSIKPM---INDLLKQKH------DRLRAK 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV N+ T MVVG+PNVG
Sbjct: 115 GVVNI------------------------------------------TTRAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN M K VG K GVT++ + I K I +LDTPG+ P+ ++ +
Sbjct: 133 KSSFIN-----KMAKNNTAKVGDKPGVTKN---KQWIKTKMGIELLDTPGVLWPKFEDEQ 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L R ++ + L+ SDD + +
Sbjct: 185 VGLNLAFTGAIKDEIMDIETLAFKLIGKLQEEYPKRLMERYKLNSLSDDTLENMDNIG-- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S ++ D V+ + ++ R G GS+ L+R
Sbjct: 243 ---RKRGAVISGGNI----DYNRVSVLILDELRGGKLGSISLER 279
>gi|149061482|gb|EDM11905.1| rCG47900, isoform CRA_b [Rattus norvegicus]
Length = 175
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
Query: 26 MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC-RN 84
+PF+GRN L Q+ + ++P +LVLNK DL + + I + + E+ + VIFTNC ++
Sbjct: 5 IPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQQKIVQHL--EEKGLRNVIFTNCIKD 61
Query: 85 PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKA 144
N +++I+P + + RYHR E +MVVGVPNVGKSS+IN+LR H++ GKA
Sbjct: 62 EN---IKQIIPKVTELIGCSYRYHRAENPEYCIMVVGVPNVGKSSLINSLRRQHLRTGKA 118
Query: 145 V 145
Sbjct: 119 A 119
>gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405]
gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|385778807|ref|YP_005687972.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|419723176|ref|ZP_14250311.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
gi|419724920|ref|ZP_14251975.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|125713506|gb|ABN51998.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum ATCC 27405]
gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|380771540|gb|EIC05405.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|380780943|gb|EIC10606.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
Length = 291
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 151/346 (43%), Gaps = 77/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V+E+ D+R+P + +N + V+N +P ++VLNK DL + K
Sbjct: 10 MAKTRRILAENLKMVDVVVELLDARIPASSKNPEIDGIVKN-KPKIVVLNKADLADEK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
IS+ ++++ ++ Y T+ +
Sbjct: 67 ---------------------------------------ISNEWSKWYNSQGY-ATIFID 86
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR-YHRTEVYNTT-VMVVGVPN 178
+ G + + +R + D + R R ++ M+VG+PN
Sbjct: 87 SIKGTGIKQLKDQMRDI----------------MKDRIERDRQRGRIFRPIRTMIVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN + K+ G + GVTR+ + I+ I ++DTPGI P+ ++
Sbjct: 131 VGKSSLINKIAGK-----KSAVTGDRPGVTRN---KQWINVNNEIQLMDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
G+ LA ++D ++ + +A +L +L++T + L+ D L + A
Sbjct: 183 KTVGINLAVTGAIKDEIIDTVELASILLEHLSKTYPENIKKRYKLESLQDKKGYELLEEA 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR +S V D +A I ++ FR G G + L+R
Sbjct: 243 GK----KRGCIISGGEV----DLTRIAAIVLDEFRGGKIGRITLER 280
>gi|153954033|ref|YP_001394798.1| ribosomal biogenesis GTPase [Clostridium kluyveri DSM 555]
gi|219854647|ref|YP_002471769.1| hypothetical protein CKR_1304 [Clostridium kluyveri NBRC 12016]
gi|146346914|gb|EDK33450.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
gi|219568371|dbj|BAH06355.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 280
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R ++I+++LK VD+V+E+ D+R+ +N ++ S+ +P +++LNK DL E
Sbjct: 10 MARTKREIKENLKLVDVVVEIRDARIIKASKNPDIE-SICGSKPRIILLNKSDL---SEE 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S+ ++ + V+ NC +G++ I P L + +
Sbjct: 66 SITKQWISYLLEDNVRVLAVNCNT--GQGLKSIRPMLNELLEE----------------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + MKK I+ MVVG+PNVG
Sbjct: 107 --------------KHNRMKKKGVAKIV--------------------DRAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN + S + K +G + GVT+S + I K I ++DTPGI P++++ E
Sbjct: 133 KSSFINKMAKSSIAK-----IGDRPGVTKS---KQWIKTKLGIELMDTPGILWPKLESEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+ LA ++D ++ N+A +L L R R ++ + LDE S++ + + A K
Sbjct: 185 TQLNLAFTGAIKDEIMDIENLALMLLKVLCRDYPDRVINRYKLDELSEEPLENMNNIAKK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ +++ N V + + ++ FR G G + L+R
Sbjct: 245 RGAILSGKEINYNRVSI---------MLLDEFRGGKLGPISLER 279
>gi|408390225|gb|EKJ69630.1| hypothetical protein FPSE_10167 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 24/185 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPL------ 222
M+VG+PNVGKSS++N LR S + K KA G + G+TR + + V+I E
Sbjct: 129 AMIVGMPNVGKSSLLNTLRRSGLPQKLAKAAKTGGQPGITRKIGTSVRILETEGKDSRRG 188
Query: 223 ----IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
+++LDTPG+ +P +DN E +++A ++ LV + DY+L+ LN+ Y
Sbjct: 189 VGEGVFVLDTPGVFVPYVDNAETMIKIALVQGIKIGLVPAEVLVDYLLYRLNKLNPAFYK 248
Query: 279 DFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +P++ + LL A+K K + P+ A +F++ +R G G
Sbjct: 249 QY---SKPTNSVQELLTSVAVKTGKLKAGGE---------PNLHGAASVFLKDWRTGKLG 296
Query: 339 SVMLD 343
ML+
Sbjct: 297 KFMLE 301
>gi|344304077|gb|EGW34326.1| hypothetical protein SPAPADRAFT_59741 [Spathaspora passalidarum
NRRL Y-27907]
Length = 368
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 69/287 (24%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV--RKEQS 72
+D+V+EV D R P N L + + + +VL +K+DL S+I K+ + S
Sbjct: 37 IDLVVEVRDGRAPLATSNVLFDRVLSGKKKLVL-YSKKDL------SIINTKLLDKWHSS 89
Query: 73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV---YNTTVMVVGVPNVGKSS 129
+ ++ NC N V+KI+ ++ YH ++ M++G+PNVGKS+
Sbjct: 90 SNEDYMYVNCNNNT--DVKKIINKIKQ------EYHDYDLPPPLGLRAMIIGMPNVGKST 141
Query: 130 IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
++N LR VG P V K++I
Sbjct: 142 LVNKLRE-------------------------------------VGNP-VNKNAI----- 158
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
K+ K VG + GVTR+ ++I + P +++ DTPG+ LP + + E + L
Sbjct: 159 --SQKQTKVAKVGGQPGVTRNTSEVIRICKNPDLFVYDTPGVFLPTVKDPETMLTLGLVG 216
Query: 250 TLQDHLVGEINIADYILFYLNRTG--NYRYVDFFNLDEPSDDIVMLL 294
+ + + I +ADY+L+ LN Y DF +D P++DI LL
Sbjct: 217 CVHESFIDPIILADYLLYLLNLQDPRGVLYADF--MDHPTNDIYELL 261
>gi|167750815|ref|ZP_02422942.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702]
gi|167656250|gb|EDS00380.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium siraeum
DSM 15702]
Length = 282
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 146/346 (42%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE LK VD V E+ DSR+P + RN ++ + +P +++LNK D + E
Sbjct: 14 MTKTKRQIEADLKLVDAVAEIVDSRIPESSRNPVIS-DITGSKPRIILLNKCDYAD---E 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + + + + +CR+ KGV+ P ++++ ++ + +
Sbjct: 70 KVTAEWQKYYTAQGYKAMICDCRS--GKGVKAFTPNVKNLLSDLLAKRKAK--------- 118
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ VG+S LR VMVVG+PNVG
Sbjct: 119 GI--VGQS-----LR-----------------------------------VMVVGIPNVG 136
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN + K V + GVTR +S + +LDTPGI P+ D+ +
Sbjct: 137 KSSFIN-----RISKAGKTKVEDRPGVTRGAQW---VSLDKELELLDTPGILWPKFDDQQ 188
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD--DIVMLLAKAA 298
++L ++D ++ +AD +L YL + + LDE ++ D+ M+
Sbjct: 189 VAIKLGYTGAIKDDVMDVCELADSLLGYLWENYKGNVITRYKLDENTEKPDLEMIAR--- 245
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S PD A ++ FR G G + L+R
Sbjct: 246 ------KRGMLISGGE----PDIERAAAAVLDEFRSGKLGRISLER 281
>gi|23098994|ref|NP_692460.1| hypothetical protein OB1539 [Oceanobacillus iheyensis HTE831]
gi|22777222|dbj|BAC13495.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 285
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 146/344 (42%), Gaps = 75/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++E+ LK VD VIE+ D+R P + +N +L+Q + N +P ++VL K+DL +
Sbjct: 10 MAKAKREVEEKLKLVDFVIELVDARAPLSSQNPMLKQVLNN-KPKLIVLMKKDLADQ--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EV N G Q I + H D + ++
Sbjct: 66 ---------------EVTKRWVDKFNEDGTQAIDVNVNHKGDIQKVIQQAKL-------- 102
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L M+K K I P R R M+VG+PNVG
Sbjct: 103 -------------LGQDKMEKLKRKGIQP----------RPARA-------MIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + K G + G+T+ Q+ I K +LDTPGI P+ +
Sbjct: 133 KSTLINRLANKKIAK-----TGDRPGITKQ---QLWIKVKKDFELLDTPGILWPKFEEEV 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA T++D L+ ++ +I+ Y++ + D + L+E D + + + I
Sbjct: 185 VGYRLAAIGTIKDQLLPLPDVTAFIIRYMSEHYPNQLKDRYQLEEIEDMVEVFESIGRI- 243
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
R S V + +VA I I R G G++ L++
Sbjct: 244 -----RGALESGGQV----NYDKVADIVIRDLRVGRLGTITLEQ 278
>gi|256092631|ref|XP_002582009.1| GTP-binding protein-related [Schistosoma mansoni]
Length = 301
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 86/208 (41%), Gaps = 35/208 (16%)
Query: 170 TVMVVGVPNVGKSSIINALRS-SHMKKGKAVPVGPKAGVTRSVMSQVKI----------- 217
TVMV+G+PN GKS++INALRS H G A VG AG TRSV + +
Sbjct: 79 TVMVLGIPNSGKSTLINALRSIGHGGPGGAARVGRTAGQTRSVGHPIILYRGNSSHISDD 138
Query: 218 -------SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
S I + DTPGI PR L + L C + + + DY+LF+ N
Sbjct: 139 IDGSVMGSPDYKIQVFDTPGILEPRARTLSERLSLCVCGAVDYSSLQPEVLVDYLLFWFN 198
Query: 271 RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK---------WFKRAFDVSSNSVR----- 316
R YV F+L P+ D+ LL K K W + S +
Sbjct: 199 RHQRTEYVSLFDLPGPTTDVNELLISVCFKNKFFVTVSKPSWLPNEIETSDELFKSNITQ 258
Query: 317 --MFPDTGEVARIFIEHFRKGSFGSVML 342
PDT A + F +G FG V
Sbjct: 259 KMSIPDTKRAAFHILRLFNQGYFGPVTF 286
>gi|402834432|ref|ZP_10883034.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
gi|402278050|gb|EJU27116.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. CM52]
Length = 276
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 73/336 (21%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+E++LK VD+V+E+ D+R+P N +L++ V + +P V+ LNKRDL + K E
Sbjct: 1 MEENLKLVDVVVELLDARIPAASANPMLREIVGD-KPRVVALNKRDLADEKMTKCWLEYF 59
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
R ++ + V + KG++++L ++ + HRTE
Sbjct: 60 RAQK--LPAVALDSV---TGKGMRELLALIEKAAK-----HRTERL-------------- 95
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
+ KG A VM++G+PNVGKSS+IN
Sbjct: 96 -----------VSKGVAA---------------------RKARVMILGIPNVGKSSLINR 123
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L + K K GVTR+ ++I + +LDTPGI P+ ++ G++LA
Sbjct: 124 LAGAAKAK-----TADKPGVTRA-KQWIRIGAD--VDLLDTPGILWPKFEDRAVGLKLAF 175
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRA 307
+ D + N+A +L L R R + F E + L +A + KR
Sbjct: 176 TGAVNDEIYDLENVAHLLLAALRRDHPERLQERFKFKEALPETTEELMEAIGR----KRG 231
Query: 308 FDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + D +V I + FR G FG + LD
Sbjct: 232 CLLKGGRI----DFEKVQHILLTEFRMGKFGKISLD 263
>gi|353229395|emb|CCD75566.1| GTP-binding protein-related [Schistosoma mansoni]
Length = 294
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 86/208 (41%), Gaps = 35/208 (16%)
Query: 170 TVMVVGVPNVGKSSIINALRS-SHMKKGKAVPVGPKAGVTRSVMSQVKI----------- 217
TVMV+G+PN GKS++INALRS H G A VG AG TRSV + +
Sbjct: 72 TVMVLGIPNSGKSTLINALRSIGHGGPGGAARVGRTAGQTRSVGHPIILYRGNSSHISDD 131
Query: 218 -------SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
S I + DTPGI PR L + L C + + + DY+LF+ N
Sbjct: 132 IDGSVMGSPDYKIQVFDTPGILEPRARTLSERLSLCVCGAVDYSSLQPEVLVDYLLFWFN 191
Query: 271 RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK---------WFKRAFDVSSNSVR----- 316
R YV F+L P+ D+ LL K K W + S +
Sbjct: 192 RHQRTEYVSLFDLPGPTTDVNELLISVCFKNKFFVTVSKPSWLPNEIETSDELFKSNITQ 251
Query: 317 --MFPDTGEVARIFIEHFRKGSFGSVML 342
PDT A + F +G FG V
Sbjct: 252 KMSIPDTKRAAFHILRLFNQGYFGPVTF 279
>gi|357156842|ref|XP_003577594.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 372
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 117/270 (43%), Gaps = 59/270 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I LK D+VIEV DSR+P + N LQ V + + +L LNK+DL N
Sbjct: 30 MAAASRAIRDRLKLADLVIEVRDSRIPLSSANEDLQ-PVLSAKRRILALNKKDLANPNMM 88
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + + +C + N I L + + E VMVV
Sbjct: 89 NMWLDHFESRKQ--------DCISINSHSSNSINQLLGLVELKLKEAILKE-PTLLVMVV 139
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GVPNVGKS++IN++ HR
Sbjct: 140 GVPNVGKSALINSI---------------------------HR----------------- 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
I R K K VGP GVT+ + + KI+ +P IY+LDTPG+ +P I ++E
Sbjct: 156 ----IARSRFPVNDKIKRATVGPLPGVTQDI-AGYKIASQPSIYVLDTPGVLVPSIPDME 210
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLN 270
G++LA ++D +VGE IA Y+L LN
Sbjct: 211 TGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
>gi|331703423|ref|YP_004400110.1| hypothetical protein MLC_4040 [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801978|emb|CBW54132.1| Conserved hypothetical GTP binding protein [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 316
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 158/357 (44%), Gaps = 93/357 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 12 MNKTLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKD-KPIVYIFSKADIADSKIT 70
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ V+ E S + + Y+R T++ N +
Sbjct: 71 QQWVDYYVKNENSKV-----------------------------IVLYNRHTDIVNDLI- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L + +K KA I TL +V+G+PN
Sbjct: 101 ----------NVINELTAKKREKDKAKGIKNTL-----------------INALVIGIPN 133
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 134 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 185
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 186 ETVAVNICAINSIKDNVFPKERVAAKLMSYV--YNNYDDVIEKYYKINLRLQKPISVIDS 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHFRKGSFGSVMLDR 344
+ I+KKW+ + D ++ RI F++ KG G + ++
Sbjct: 244 YKIFETIGIEKKWY------------VTEDILDMERILSSFLKDLEKGKLGKISFEK 288
>gi|291530691|emb|CBK96276.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum 70/3]
gi|291557800|emb|CBL34917.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum
V10Sc8a]
Length = 282
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 146/346 (42%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE LK VD V E+ DSR+P + RN ++ + +P +++LNK D + E
Sbjct: 14 MTKTKRQIEADLKLVDAVAEIVDSRIPESSRNPVIS-DITGSKPRIILLNKCDYAD---E 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + + + + +CR+ KGV+ P ++++ ++ + +
Sbjct: 70 KVTAEWQKYYTAQGYKAMICDCRS--GKGVKAFTPNVKNLLSDLLAKRKAK--------- 118
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ VG+S LR VMVVG+PNVG
Sbjct: 119 GI--VGQS-----LR-----------------------------------VMVVGIPNVG 136
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN + K V + GVTR +S + +LDTPGI P+ D+ +
Sbjct: 137 KSSFIN-----RISKAGKTKVEDRPGVTRGAQW---VSLDKELELLDTPGILWPKFDDQQ 188
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD--DIVMLLAKAA 298
++L ++D ++ +AD +L YL + + LDE ++ D+ M+
Sbjct: 189 VAIKLGYTGAIKDDVMDVCELADNLLGYLWENYKGNVIARYKLDENTEKPDLEMIAR--- 245
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S PD A ++ FR G G + L+R
Sbjct: 246 ------KRGMLISGGE----PDIERAAAAVLDEFRSGKLGRISLER 281
>gi|335038410|ref|ZP_08531661.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
gi|334181699|gb|EGL84213.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+PF+ +N ++ + V++ +P +++LNK+DL +
Sbjct: 10 MAKAKRQVMEKLKLIDVVIELLDARLPFSSQNPMMDELVKD-KPRLVLLNKKDLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S+ E+ +R + + + + ++ N G++ I Q ++ +
Sbjct: 66 SVTEKWLRFFEKKAFQALAVDAQSGN--GIKAIPSACQTLARD----------------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I+ + MK PI ++VG+PNVG
Sbjct: 107 ---------IMKKMTDKGMK---PRPI----------------------RALIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L H+ K G + GVT++ Q I + +LDTPGI P+ D+
Sbjct: 133 KSSLINRLAKRHVAK-----TGDRPGVTKA---QQWIKTGHGLELLDTPGILWPKFDDPL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LAA ++D ++ + +A + + +L R R + + L + V ++ K
Sbjct: 185 VGLKLAASGAIRDEILPKEEVALFAIDFLRRVYPERLKNRYTLQGLTGTNVEIMEAIGQK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ K V D G ++ I + R G G + +
Sbjct: 245 RGCLKAGASV---------DYGRISDIILNDLRSGKLGPISFE 278
>gi|256384293|gb|ACU78863.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256385126|gb|ACU79695.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455785|gb|ADH22020.1| ribosome biogenesis GTP-binding protein YlqF [synthetic Mycoplasma
mycoides JCVI-syn1.0]
Length = 316
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 93/357 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 12 MNKTLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKD-KPIVYIFSKADIADSKIT 70
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ V+ E S + + Y+R T++ N +
Sbjct: 71 QQWVDYYVKNENSKV-----------------------------IVLYNRHTDIVNDLI- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L + +K KA I TL +V+G+PN
Sbjct: 101 ----------NVINELTAKKREKDKAKGIKNTL-----------------INALVIGIPN 133
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 134 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 185
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 186 ETVAVNICAINSIKDNVFPKERVAAKLMSYV--YNNYDDVIEKYYKINLKLQKPISVIDS 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHFRKGSFGSVMLDR 344
+ I+KKW+ + D ++ RI F+ KG G + ++
Sbjct: 244 YKIFETIGIEKKWY------------VTEDILDMERILSSFLRDLEKGKLGKISFEK 288
>gi|241958362|ref|XP_002421900.1| mitochondrial GTPase, putative [Candida dubliniensis CD36]
gi|223645245|emb|CAX39882.1| mitochondrial GTPase, putative [Candida dubliniensis CD36]
Length = 368
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 63/300 (21%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D+++EV DSR P + N L + + + + ++L +K+DL K L EK K ++
Sbjct: 37 LDLILEVRDSRAPISTTNVLFDKVLPSKKKLILY-SKKDLSILKPRLL--EKWHKSKNE- 92
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+ +F +CR+ + +KI+ ++ + D+M M++G+PNVGKSS++N L
Sbjct: 93 -QYMFVDCRSK--RDGKKIITEIKKLYDSM---ETPPPLGLRTMIIGMPNVGKSSLVNTL 146
Query: 135 RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK 194
R + +G++ IS + + RT
Sbjct: 147 RYVGLSEGESA--------ISTKIRKVART------------------------------ 168
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDH 254
G + GVTR+ +++S P I + DTPG+ LP N E + LA + +
Sbjct: 169 -------GGQPGVTRNTSEIIRLSRDPEIMVYDTPGVFLPTTKNAETMLSLALVGCINES 221
Query: 255 LVGEINIADYILFYLN---RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK--RAFD 309
+ + +ADY+L+ LN TG Y D+ +D P++++ LL K+ K + FD
Sbjct: 222 FIDPVILADYLLYVLNLQDPTGKL-YTDY--IDHPTNNVYELLESINQKRNVLKIDKRFD 278
>gi|410658771|ref|YP_006911142.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. DCA]
gi|410661761|ref|YP_006914132.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. CF]
gi|409021126|gb|AFV03157.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. DCA]
gi|409024117|gb|AFV06147.1| 50S ribosomal subunit maturation GTPase RbgA [Dehalobacter sp. CF]
Length = 273
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 26/223 (11%)
Query: 124 NVGKSSIINALRS-SHMKKGKAVPILPTLQHISDNMTRYHRTEVYN--TTVMVVGVPNVG 180
+GK + A+ S + + K VP+L L ++D R V VMVVG+PN+G
Sbjct: 74 KLGKEGPVLAISSMTSIGVKKIVPLLEEL--MTDKRERLAARGVRGRPIRVMVVGIPNIG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L G G K GVTR ++I +K + +LDTPG+ P+ D+ E
Sbjct: 132 KSTLINQLTG-----GSQAKTGNKPGVTRG-NQWIRIHDK--VELLDTPGMLWPKFDDPE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D + + +A ++L +L + F+ L+E D+ I
Sbjct: 184 VGRKLAVTGAVRDEVFDQEELAQWLLAWLKQNYPQELQSFYKLEETDTDL------EGIG 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ KR VS + DT + A+IF+ FR G V +D
Sbjct: 238 R---KRGCLVSGGRI----DTFKAAQIFLREFRSGKIAKVTMD 273
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R + +E+ L VDIV+E+ D+R+P + RN LL+Q + N +L+LNK DL + K
Sbjct: 10 MTRAKRKLEEQLAWVDIVMELGDARLPLSSRNPLLKQLLGNKL-RLLLLNKSDLADKKRI 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYN--TTV 117
K+ KE ++ T+ GV+KI+P L+ + +D R V V
Sbjct: 69 DQWLVKLGKEGPVLAISSMTSI------GVKKIVPLLEELMTDKRERLAARGVRGRPIRV 122
Query: 118 MVVGVPNVGKSSIINALRSSHMKK 141
MVVG+PN+GKS++IN L K
Sbjct: 123 MVVGIPNIGKSTLINQLTGGSQAK 146
>gi|114567011|ref|YP_754165.1| GTP-binding protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337946|gb|ABI68794.1| Ras superfamily GTP-binding protein YlqF [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 278
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++IEK++K VDI + + D+R PF+ RN L++ +N + +V+VLNK DL +
Sbjct: 10 MVKARREIEKNIKLVDIALILLDARAPFSCRNSDLEKIARN-KKVVMVLNKADLASP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +R+ + + F ++ T+ +S
Sbjct: 66 ----EAIRRYMQALEQEGF-------------LVATMDSLSGK----------------- 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ +++ +S+ +K ++ + R R MV+GVPN+G
Sbjct: 92 -----GRQAVLRMAKSAFREK-------------AEELQRKGRRP-RAIRAMVMGVPNIG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ +N L K G K GVTR V++ E I +LDTPG+ PR+++ E
Sbjct: 133 KSTFLNCLVGQ-----KIAQTGAKPGVTRG-KQWVRLHED--IELLDTPGLMWPRVESEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA + ++ E + Y+L L ++ LD + +LA A K
Sbjct: 185 QGLKLALLDIVGENAYSEYEVGLYLLSILKDKHPQILLEKLGLDVGNQLEEEMLAAIARK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + PD + ++ ++ FR+G G++ LD
Sbjct: 245 RGYLLKGG---------VPDLDKTCQVLLQEFRRGKLGTISLD 278
>gi|224534458|ref|ZP_03675034.1| GTP-binding protein [Borrelia spielmanii A14S]
gi|224514135|gb|EEF84453.1| GTP-binding protein [Borrelia spielmanii A14S]
Length = 279
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKTNIVLEILDARAPFSSKNPLAEKIIKN-QTKIILLHKSDI------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 79 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKISE+ I + D PGI I +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKISEE--INLFDMPGILWHNIVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + GE ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIHKKNELNL----GEASKILIKEFREGKFGKIILDKNY 276
>gi|380488494|emb|CCF37335.1| hypothetical protein CH063_08699 [Colletotrichum higginsianum]
Length = 359
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 78/350 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
L++I L +V +V+E D R+P T N +L +++ R ++V RDL +
Sbjct: 34 ALREISSRLSDVGLVLECRDYRVPITSWNPVLDRAIAG-RERIVVYTHRDL-GADSPXXX 91
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E +R R+HR +V G P
Sbjct: 92 EHALR-------------------------------------RFHRGHS-----VVGGTP 109
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+I + + + + ++ H D++T +VVG+PNVGKS+
Sbjct: 110 Q----RVIFWRKDDPASTKQLLSEIRSVAHSVDSLT--------GMRALVVGMPNVGKST 157
Query: 184 IINALRSSHM-KKGKAVPVGPKAGVTRSVMSQVKISEKPL---------IYILDTPGISL 233
++N LR M KK VG + GVTR + S V+I + +++LDTPG+ +
Sbjct: 158 LLNKLRVHGMHKKPNVARVGAQPGVTRKLGSPVRILDSEGDGGMGLGEGVFVLDTPGVFM 217
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
P + E ++LA +++D + +ADY+L+ LN T Y + EP++++ L
Sbjct: 218 PYVSEAENMVKLALVGSVKDDRIPMEILADYLLYRLNLTDPSAYAKY---SEPTNEVNDL 274
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L A K K + +++S A I+ +R G+ G +LD
Sbjct: 275 LLGVARKTGKLKAGGEANADS---------AADWIIKQWRAGNLGKFVLD 315
>gi|156089643|ref|XP_001612228.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799482|gb|EDO08660.1| hypothetical protein BBOV_III011080 [Babesia bovis]
Length = 373
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+MVVG+PN ++ +AG TR M+ +SEKP +Y DTPG
Sbjct: 187 MMVVGLPNATTAA--------------------EAGSTRH-MNAFFVSEKPKLYCFDTPG 225
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
+ LP+++ E + LAA + DH G IADYIL+ LNR ++YVD + P+DD+
Sbjct: 226 VMLPKMNCPEINLVLAAIGCVNDHRAGVDYIADYILYRLNRNRMFKYVDILGMQGPTDDV 285
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFP--DTGEVARIFIEHFRKGSFGSVMLD 343
++ +S + R + + RIFI FR G FG + +D
Sbjct: 286 TEIMEH-------------ISQIAERKYGTIEPSNCYRIFINQFRLGRFGRICMD 327
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I K + VD ++EV D+R P T N L + + P ++VLNK DL+ K
Sbjct: 81 MAKAKLNIGKKKQAVDCILEVRDARAPLTSSNCSLVEEYPDHIPRLVVLNKSDLVLPKDI 140
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + K H V ++ G+++I + ++ +T ++T +MVV
Sbjct: 141 KRSCELLEKTGRH--AVAYSAL------GLRRITQIIDFVTSKVTPKYKT--LGVWMMVV 190
Query: 121 GVPNVGKSSIINALRSSHM 139
G+PN ++ + R HM
Sbjct: 191 GLPNATTAAEAGSTR--HM 207
>gi|338813257|ref|ZP_08625386.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
gi|337274616|gb|EGO63124.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
Length = 281
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 147/346 (42%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +HLK +D+VIE+ D+R+P + N ++Q+ V + +P V+ NK DL +S+
Sbjct: 10 MAKARRVISEHLKLIDVVIELLDARIPESSANPMIQEIVGD-KPRVIAFNKADLADSR-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H M R+
Sbjct: 67 --------------------------------------HTEQWMARFKEQ---------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+P + I A+ +K+ I Q ++ + ++ + + V MV+G+PN
Sbjct: 79 GLP----VAAIEAVSGKGLKQ----LIQYVEQAAAEKLAKWEAKGIKSRPVRAMVLGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN L + K P GVTR +KI + + +LDTPG+ P++D+
Sbjct: 131 VGKSSLINRLLGTATVKTANRP-----GVTRG-QQWIKIGNR--LELLDTPGVLWPKMDD 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
+LA ++D + + ++ +L + R ++ F+L E P+D+ +L
Sbjct: 183 QAVAFKLAVTGAVKDDVYDYDTVLKQLVDFLRQEYPGRLIERFSLTEIPADNQALLGLIG 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A KR S V D + +I ++ FR G G + LD
Sbjct: 243 A------KRGCLKSGGLV----DYEKAGKILLQEFRNGKLGKITLD 278
>gi|68485571|ref|XP_713268.1| hypothetical protein CaO19.9920 [Candida albicans SC5314]
gi|68485678|ref|XP_713217.1| hypothetical protein CaO19.2384 [Candida albicans SC5314]
gi|46434698|gb|EAK94100.1| hypothetical protein CaO19.2384 [Candida albicans SC5314]
gi|46434750|gb|EAK94151.1| hypothetical protein CaO19.9920 [Candida albicans SC5314]
gi|238879798|gb|EEQ43436.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 368
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 61/283 (21%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D+++EV DSR P + N L + + + + ++L +K+DL K L EK K ++
Sbjct: 37 LDMILEVRDSRAPISTTNVLFDKVLPSKKKLILY-SKKDLSILKPRLL--EKWHKSKNE- 92
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+ +F +CR+ + +KI+ ++ + D+M M++G+PNVGKSS++N L
Sbjct: 93 -QYMFVDCRSK--RDGKKIINEIKKLYDSM---ETPPPLGLRTMIIGMPNVGKSSLVNTL 146
Query: 135 RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK 194
R VG+ + G++++ +R
Sbjct: 147 R-------------------------------------YVGLSD-GENAVSTKIR----- 163
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDH 254
K G + GVTRS +++S P I + DTPG+ LP N E + LA + +
Sbjct: 164 --KVARTGGQPGVTRSTSEIIRLSRDPEIMVYDTPGVFLPTTKNAETMLSLALVGCINES 221
Query: 255 LVGEINIADYILFYLN---RTGNYRYVDFFNLDEPSDDIVMLL 294
+ + +ADY+L+ LN TG Y D+ +D P++++ LL
Sbjct: 222 FIDPVILADYLLYVLNLQDPTGKL-YTDY--IDHPTNNVYELL 261
>gi|78043127|ref|YP_360259.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77995242|gb|ABB14141.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 276
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 155/340 (45%), Gaps = 79/340 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIE- 64
K + +K VD+V+E+ D+R+P + +N +++ +N +P ++ L N K + +E
Sbjct: 14 KALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKN-KPRIV------LFNKKDLADVEK 66
Query: 65 -EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E++ K+ V + + G++ EV+N
Sbjct: 67 TEEILKKLPWPEGVYYCLVESKATGGLK-------------------EVWN--------- 98
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
II + + +K + P R R MVVG+PNVGKS+
Sbjct: 99 ------IIEKVYGQYKEKWSGKGLRP----------RPLRG-------MVVGIPNVGKST 135
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM 243
+IN L ++V G K GVTR V +K+S+K + ++DTPG+ P++ ++E G+
Sbjct: 136 VINRLLK------RSVKTGAKPGVTRGV-QWIKLSDK--LELMDTPGVLWPKLGDMEVGL 186
Query: 244 RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKW 303
+L A ++ D ++ I +A+++L L + + FNL+ S+++ + K ++
Sbjct: 187 KLGATGSISDEVLPVIEVANWLLKILCTYRKPEFFNRFNLNG-SENLNEIYEKIGRRRGL 245
Query: 304 FKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
F R ++ D +VA + ++ FR+G G LD
Sbjct: 246 FLRGEEI---------DYQKVALVILKEFRQGLLGKYTLD 276
>gi|433454544|ref|ZP_20413111.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma sp. G5847]
gi|431933320|gb|ELK19913.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma sp. G5847]
Length = 316
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 93/357 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 12 MNKTLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKD-KPIVYIFSKADIADSKVT 70
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ ++ E S + + Y+R T+V N +
Sbjct: 71 QQWVDYYIKNENSKV-----------------------------IVLYNRHTDVVNDLI- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L +K KA I TL +V+G+PN
Sbjct: 101 ----------NVINELTVKKREKDKAKGIKNTL-----------------INALVIGIPN 133
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 134 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 185
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 186 ETVAVNICAINSIKDNVFPKERVAAKLMSYV--YNNYDDVIEKYYKINLRLQKPISVADS 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHFRKGSFGSVMLDR 344
+ I+KKW+ + D ++ RI F+ KG G + ++
Sbjct: 244 YKIFETIGIEKKWY------------VTEDILDMERILSSFLRDLEKGKLGKISFEK 288
>gi|414871399|tpg|DAA49956.1| TPA: hypothetical protein ZEAMMB73_838371 [Zea mays]
Length = 237
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 172 MVVGVPNVGKSSIINAL------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYI 225
M+VGVPNVGKS++IN++ R K K VGP GVT+ + + KI+ +P IY+
Sbjct: 1 MLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDI-AGYKIATQPSIYV 59
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
LDTPG+ +P I ++E G++LA ++D +VGE IA Y+L N
Sbjct: 60 LDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFN 104
>gi|386714315|ref|YP_006180638.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
gi|384073871|emb|CCG45364.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
Length = 280
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 65/270 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ ++LK VD VIE+ D+R P + +N +LQ + +P ++VL K+DL + K
Sbjct: 10 MAKAKREASENLKLVDFVIELVDARAPLSSQNPMLQ-GILGDKPKMMVLMKKDLADPK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
V KE L+H +N E N +
Sbjct: 67 ------VTKEW-------------------------LEHFKENGFPSIAIEA-NNKQDIQ 94
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V N+GKS + + ++K KA + P R R M++G+PNVG
Sbjct: 95 AVINLGKS-----IGNEKIEKLKAKGVRP----------RASRA-------MILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + K G K GVT+ Q I K +LDTPGI P+ + E
Sbjct: 133 KSTLINRLANKSIAK-----TGDKPGVTKK---QQWIKVKNEFDLLDTPGILWPKFEEEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLN 270
G RLA+ T++D ++ ++A Y+L YL
Sbjct: 185 VGYRLASIGTIKDQILPTEDVAAYVLDYLQ 214
>gi|448509063|ref|XP_003866050.1| Mtg1 protein [Candida orthopsilosis Co 90-125]
gi|380350388|emb|CCG20610.1| Mtg1 protein [Candida orthopsilosis Co 90-125]
Length = 385
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 60/283 (21%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D+++EV D R P N L + + R ++L +K+DL K + L + K +
Sbjct: 53 LDLILEVRDCRAPVATTNVLFDKLLSTKRKLILY-SKKDLSILKPDLLKKWHSSKNE--- 108
Query: 75 SEVIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 133
E +F +CR+ +CK +I+ + I DN + M++G+PNVGKS+++N
Sbjct: 109 -EFMFIDCRHRGDCK---RIINKMTQIYDN---FDAKPPLGLRAMIIGMPNVGKSTLVNT 161
Query: 134 LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 193
+R VG+ + S+ +R
Sbjct: 162 MRQ-------------------------------------VGLGRENRDSVSTKVR---- 180
Query: 194 KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQD 253
K G + GVTRS +++S P I + DTPGI LP + + E + L + D
Sbjct: 181 ---KVAKTGGQPGVTRSTSEIIRLSRDPDIMVYDTPGIFLPTVKSPETMLTLGLVGCIHD 237
Query: 254 HLVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLL 294
+ + +ADY+LF LN + Y D+ + P++DI L+
Sbjct: 238 SYIDPVVLADYLLFLLNLQDSSGKPYEDY--MSHPTNDIYELM 278
>gi|326803549|ref|YP_004321367.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650327|gb|AEA00510.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
Length = 293
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK+VD V+E+ D+R+P +N L+ Q +Q + ++ VLNK DL +
Sbjct: 11 MAKAKRQVQEQLKSVDWVVEIRDARIPIASKNPLIDQIIQQKKRLI-VLNKADLADPNQN 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L +R + + + I + +N K ++K+ R++ EV
Sbjct: 70 KLWLNHLRNKDT---DAIAIDSKN--NKEIKKL------------RHYLLEV-------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R + KG + +MV+G+PNVG
Sbjct: 105 ----------TGGERQKWLDKGMKQKTI---------------------RLMVLGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L +H K K VG + GVT+ V+I + +LDTPGI P+ ++
Sbjct: 134 KSTLINQL--THKKSAK---VGNRPGVTKG-QQWVQIDKD--FSLLDTPGILWPKFEDPL 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVMLLA 295
GM LA ++D +IA Y + ++ + FFNL E P +++M L
Sbjct: 186 VGMNLALTGAIKDTHYYSDDIALYAMQFMMDYYMEDFCQFFNLSEEEAQPPYPELMMSL- 244
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+N + M D + I FR G + LDR
Sbjct: 245 ----------------TNKMGMKDDYERFSDWLIREFRSGKIAPMTLDR 277
>gi|66827199|ref|XP_646954.1| hypothetical protein DDB_G0268990 [Dictyostelium discoideum AX4]
gi|60475148|gb|EAL73084.1| hypothetical protein DDB_G0268990 [Dictyostelium discoideum AX4]
Length = 435
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 50/214 (23%)
Query: 171 VMVVGVPNVGKSSIINALR-SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
V++ G+PNVGKSS IN++R +S + K+ VG GVTR + V E P I+I+DTP
Sbjct: 193 VLICGLPNVGKSSFINSVRNASKIGNSKSAKVGALPGVTRHISGFVA-CEDPPIFIVDTP 251
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF------- 281
GI +P +D+ E + LA + + +V I+++D++LF LN N+ Y+
Sbjct: 252 GIMIPGNLDSNETTLTLALLGCITEKIVPIISLSDFLLFKLNSISNFNYLKLIENENTKE 311
Query: 282 ---------------------------NLD----EPSDDIVMLLAKAAIKKKWFKRAFDV 310
NLD EP+DDI L + + K
Sbjct: 312 EEKQEEKQNNNNNNNNNNNNDDNLIPTNLDKFSNEPTDDINKFLKLVSKRNKMLLSG--- 368
Query: 311 SSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
PD A+ FI +R+G G LD+
Sbjct: 369 ------GLPDLELAAKYFIAQYREGKLGCFTLDK 396
>gi|317129226|ref|YP_004095508.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
gi|315474174|gb|ADU30777.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
Length = 282
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 88/350 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK +D+VIE+ D+R+P + RN ++ + V++ +P +++LNK DL +
Sbjct: 10 MAKAKRQVQEKLKVIDVVIELVDARVPLSSRNPMIDELVKS-KPRLILLNKSDLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
Q ++D +Y T+ +
Sbjct: 65 -------------------------------------QKVTDLWVKYFETKGF------- 80
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTL-QHISDNMTRYHRTEVYN---TTVMVVGV 176
A++ + +KG V +P + + ++ +T R + N +++G+
Sbjct: 81 ------------AVQQINAQKGTGVKKIPAIVEKLAKPITDKMRAKGMNPRAVRALILGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+IIN L + + VG K GVT++ +K+ ++ + +LDTPGI P+
Sbjct: 129 PNVGKSTIINRLANKRI-----ATVGDKPGVTKA-QQWIKVGKE--MELLDTPGILWPKF 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML--- 293
++ G RLA +++ L ++L YL R D + L+ ++IV +
Sbjct: 181 EDESVGFRLALTGAIKEELFDFNETTLFLLRYLAEKYPERLKDRYKLENIPENIVEIYDH 240
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ K R +S + D V+ I FR G G++ L+
Sbjct: 241 IGKL--------RGTLMSGGLI----DYDRVSEILFREFRSGMLGNITLE 278
>gi|225454936|ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
gi|297744953|emb|CBI38545.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 167 YNTTVMVVGVPNVGKSSIINAL----RSSHMKKGKA--VPVGPKAGVTRSVMSQVKISEK 220
Y T+M+VG+PNVGKS++ N+L R S +KGK V P G TR + S +KI
Sbjct: 131 YTATIMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPIPGETRDI-SSLKIGSH 189
Query: 221 PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF 280
P +Y+LDTPGI P I ++ +LA ++D LVGE +A Y L LNR+ Y+ +
Sbjct: 190 PNVYVLDTPGILPPDILDVVVCSKLALTGAIKDCLVGEKELAQYFLSILNRSDEYKKWEK 249
Query: 281 FNLDE 285
+ +E
Sbjct: 250 LSAEE 254
>gi|56964050|ref|YP_175781.1| GTPase [Bacillus clausii KSM-K16]
gi|56910293|dbj|BAD64820.1| GTPase [Bacillus clausii KSM-K16]
Length = 288
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 149/353 (42%), Gaps = 90/353 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I++ LK +D+VIE+ D+R+P + RN L+ + Q +P +++LNK DL +
Sbjct: 11 MAKARREIKEKLKLIDVVIELVDARLPQSSRNPLIDELAQQ-KPRLMLLNKADLADPAET 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + EV+ N + GV+ I P + ++
Sbjct: 70 ERWRAFFKRTGA---EVLAINAQT--GAGVKNIAPACKTLA------------------- 105
Query: 121 GVPNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+AL +KG K P+ +++G+PNV
Sbjct: 106 -----------SALYQKWEQKGMKPRPL----------------------RAIILGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L + K VG + GVT+ Q I K + +LDTPGI P+ D+
Sbjct: 133 GKSTLINRLVNKRQAK-----VGDRPGVTKQ---QQWIKVKQELELLDTPGILWPKFDDQ 184
Query: 240 ECGMRLAACATLQDHLVGEINIADY--ILFYLNRTGNYRYVDFFNL------DEPSDDIV 291
E G+RLAA ++D L+ DY + Y R Y D + DD+V
Sbjct: 185 EVGLRLAATGAIKDELL------DYGDVAAYALRYLAAEYPDLLEARYGIERNSEEDDVV 238
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L AI K KR V V D + A + + R G+ G V L++
Sbjct: 239 PLF--EAIGK---KRGCIVRGGLV----DFDKTAELILRELRSGTIGKVTLEK 282
>gi|268611247|ref|ZP_06144974.1| GTP-binding protein YlqF [Ruminococcus flavefaciens FD-1]
Length = 293
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 72/343 (20%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +LK VD V+E+ D+R P + RN + +N +P ++VLNK DL + K
Sbjct: 16 MAKTRRLIAANLKLVDAVVEIVDARTPLSSRNPEMDSMTRN-KPRLIVLNKCDLADKKA- 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + +++ SE I +C++ KG++ +LP + RT+V
Sbjct: 74 --TQKWINYFRNNGSEAIAVDCKS--GKGLKNLLPVV-----------RTKVL------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ S MK G AV +M+VG+PNVG
Sbjct: 112 -------KELMEKRERSGMK-GAAV------------------------RLMIVGIPNVG 139
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN M GK V + GVTR+ VK+ +LD PG+ P+ ++
Sbjct: 140 KSSLIN-----RMAGGKRAKVEDRPGVTRT-KQWVKLDNN--TELLDMPGVLWPKFEDQS 191
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+RLA + D ++ +A +L +L+ + + + DD ++L + K
Sbjct: 192 AAVRLAFTGAISDDILDIETLAMKLLVFLSENYPSSLTERYKIGYSDDDTGLILLEKVGK 251
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR +S + +T A ++ FR G G + L+
Sbjct: 252 ----KRGMMISGGEI----NTERAAITVLDEFRSGKLGHITLE 286
>gi|340500070|gb|EGR26973.1| ribosomal biogenesis gtpase, putative [Ichthyophthirius
multifiliis]
Length = 294
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 100/356 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L+ + +N+D IE+ DSR+P + RN Q + ++V NK DL N +
Sbjct: 22 MYRALRLMRDKQENIDYFIEIRDSRIPISSRNQEFDDLCQFYNKKKIIVFNKYDLSNQRV 81
Query: 60 -ESLIEE--KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
+L+E+ KV + +S + TN N N ++IL +Q +Y ++
Sbjct: 82 INNLVEKYTKVGIDCFSVSALKGTNMPNVN----EQILKRIQG------KYSTVGIW--- 128
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+M+ G+PNVGKS+IIN LR+
Sbjct: 129 LMICGMPNVGKSTIINQLRT---------------------------------------- 148
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
+R + K +A P T+S++ VKIS+ PLIY++DTPG+ +P I
Sbjct: 149 ----------LIRQKSINKSEATPC-----TTKSIVG-VKISQDPLIYLVDTPGVMIPNI 192
Query: 237 DNLEC------GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP---S 287
+ E ++L+ ++D + G+ I DY+++ LN+ +Y +++ + +
Sbjct: 193 QDDEVFTYKLKSLKLSLVGCIKDVIPGKEIILDYLVYVLNKYKIQKYKEYYGIKQEIKCG 252
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
DD+ I+ K+ + + + + I+ FR+G G +D
Sbjct: 253 DDLFCF-----IRDKYRHYNYQTTYDMI-------------IDDFRQGKLGKFTMD 290
>gi|328859396|gb|EGG08505.1| hypothetical protein MELLADRAFT_84686 [Melampsora larici-populina
98AG31]
Length = 453
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 170/412 (41%), Gaps = 112/412 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------------------- 40
M + +K+I+ L +D++IE D+R+P + N ++ +Q
Sbjct: 21 MAKAIKEIQSKLNQIDLIIETRDARLPLSSINPKFEKLIQTHSNNRDQEREQEYDQGNDQ 80
Query: 41 ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR-NPNCKGVQKI 93
++ ++V NK+DL + + E ++E K V+FTN R + + K V
Sbjct: 81 RRTIKKSLPSRLIVYNKKDLADPRLEKPLKEAFAKSGQR---VLFTNTRLDQDIKSV--- 134
Query: 94 LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
Q I +RYH T SS IN +H + +
Sbjct: 135 --LYQSIEIVKSRYHSTGPLT-------------SSDINDQSKNHHHRNQ---------- 169
Query: 154 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS 213
SD++++ + +MV G+PNVGKSS++NALR +KGK P G TRS+
Sbjct: 170 -SDSLSKGFK-------IMVCGMPNVGKSSLLNALRRVGCQKGKTASEAPMPGHTRSIGG 221
Query: 214 QVKISEK------PLIYILDTPG---ISLPRIDNLEC-GMRLAACATLQDHLVGEINIAD 263
VKI E +Y++DTPG I L + D ++A A ++D L +++
Sbjct: 222 MVKILEACKMSYGKSVYMIDTPGIMPIYLGQGDEASAIAFKIAITAGIKDSLFDSFDLSS 281
Query: 264 YIL--------------------FYLNRTGNYRYVDFF-NLDEPSDDIVMLLAKAAIKKK 302
Y+L LN + + V NL+ P +D L +I+ K
Sbjct: 282 YLLHILIQRYSILPHTPNEISQTLSLNSSPDLTLVSSNPNLELPIED---FLKSISIRIK 338
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD---RDFLELDI 351
++ P+ ++ ++ FR G FG LD +D +++D+
Sbjct: 339 ALEKG---------AIPNLEIASQYLLKSFRDGKFGRWTLDELGQDEVDMDL 381
>gi|367003693|ref|XP_003686580.1| hypothetical protein TPHA_0G03050 [Tetrapisispora phaffii CBS 4417]
gi|357524881|emb|CCE64146.1| hypothetical protein TPHA_0G03050 [Tetrapisispora phaffii CBS 4417]
Length = 392
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Query: 171 VMVVGVPNVGKSSIINALR------SSHMKKGKAVPVGPKAGVTRSVMSQVKI---SEKP 221
V+V G+PNVGKS+++NALR +S +K K G +AGVTRS ++I SE
Sbjct: 155 VLVSGMPNVGKSTLVNALRGISGATNSQKRKNKVARTGGQAGVTRSTSELIRISPDSESS 214
Query: 222 LIYILDTPGISLP-RIDNLECGM-RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
IY++D+PGISLP R+ N M L+ C ++ +LV IADY+L+ LN + +
Sbjct: 215 AIYLIDSPGISLPGRMTNSTNKMLPLSLCGCVKSNLVDPTIIADYLLYLLNLQTSKAFER 274
Query: 280 F-FNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNS-VRMFPDTGEVARIFIEHFRKGSF 337
+ L++PS+DI +L + S + PD +A I++ +R+
Sbjct: 275 YPGELEDPSNDINEVLTRLDKSSSRKTSKKTRYSRFIIDGEPDYNSIAAIWVNKWRQHQK 334
Query: 338 GSV 340
G V
Sbjct: 335 GDV 337
>gi|399924188|ref|ZP_10781546.1| putative GTPase [Peptoniphilus rhinitidis 1-13]
Length = 282
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 75/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++DIEK LK VD VIE+ DSR+P++ RN L + ++N + +L+ NK DL + K
Sbjct: 10 MKKTIEDIEKKLKLVDFVIEIIDSRIPYSSRNPLFDELLKN-KKRLLIFNKSDLSDPK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L EE ++K + I N PN V K L +S+ + +Y
Sbjct: 67 -LNEEWMKKLTDENNFAISYNATKPNVNIVVKKAEDL--MSEEIKKYE------------ 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+KKG P+ M+VG+PN G
Sbjct: 112 ---------------EKGLKKG---PL----------------------RAMIVGIPNSG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN++ + K+ G + GVT++ +KI P +++LDTPG+ P+ +
Sbjct: 132 KSTFINSISGT-----KSAKTGNRPGVTKT-NQWIKIH--PKLHLLDTPGVLWPKFEE-N 182
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L + + + +NL + + L+ I
Sbjct: 183 VGLNLAFTGAIKDEIMDRETLALKLIEKLVKIDSTLIENRYNLKD-----IKELSSIEIM 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ KR + F D +V+ I ++ FRKG G V L+
Sbjct: 238 DEIGKRRGALMRGG---FIDYEKVSGIILDEFRKGLMGKVTLE 277
>gi|389748023|gb|EIM89201.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 509
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 62/273 (22%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR-PMVLVLNKRDLINSKHESLIEEKVRKE 70
L + DIV+E+ D+R+P T N + ++Q R V + + +++ + + E++
Sbjct: 36 LSSTDIVLELRDARLPLTSINRTFEGALQKWRTERVRLSTQASVVSPTAAARVCERI--- 92
Query: 71 QSHISEVIFTNCR-------NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
V+FT +P C+ ++ P D + +NT +V
Sbjct: 93 ------VVFTKRDLVQEWGIDPFCRAMEAKFP------DQRVMFAS---WNTRTDLV--- 134
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
++ K+ + A + SHM P L V+VVG+PNVGKS+
Sbjct: 135 SLNKTLVNIAKKHSHM---------PELN------------------VLVVGMPNVGKST 167
Query: 184 IINALRSSHMK--KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID---- 237
++NALR+ ++ KA+ P+ G+TR++ +++K+S PL+Y DTPGI LP +
Sbjct: 168 LLNALRNVGIQGPTPKAMRTSPQPGLTRALSTRLKLSLDPLLYAFDTPGIMLPFLGRGER 227
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLN 270
E G++LA A +++ L ++A Y+L+ LN
Sbjct: 228 GAERGIKLALIAGIKEGLYDIEDLAAYLLYRLN 260
>gi|304316920|ref|YP_003852065.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778422|gb|ADL68981.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 278
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 150/345 (43%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE++LK VDIV E+ D+R+P + RN L+ + V+N + ++L LNK DL +S
Sbjct: 9 MAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDELVKNKKRLIL-LNKADLSDS--- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
V K+ +N +
Sbjct: 65 ----------------------------AVNKM-------------------WNEYFKKL 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPNV 179
G+ ++ IN+L SS +K+ + TL+ S+ + R + + M+VG+PNV
Sbjct: 78 GIASLN----INSLNSSSIKEIYEL----TLKECSNIIDRKRQKGIKAKLRAMIVGIPNV 129
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN+L K K+ G K GVT++ + P +LDTPGI P+ ++
Sbjct: 130 GKSTLINSL-----SKTKSAKTGNKPGVTKAK----QWIRTPYFDLLDTPGILWPKFEDE 180
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G+ LA A ++D L+ +A +L L + + + + D+ LL +
Sbjct: 181 HVGIMLALTAAIKDELLNHEELAFSLLKILKQEYPELLMQRYKIQNIDIDLYDLLREIGK 240
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + DT ++I +E FR G G + L+R
Sbjct: 241 MRGCLSSGGHI---------DTERTSKIIVEDFRTGKLGKISLER 276
>gi|365904024|ref|ZP_09441783.1| GTP-binding protein, GTPase [Lactobacillus versmoldensis KCTC 3814]
Length = 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 71/286 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ LK VDIV+E+ D+R+P++ RN +L+Q + N + +++LNK DL + K
Sbjct: 10 MNKAKNQVQDRLKVVDIVLEIVDARLPYSSRNPVLEQII-NQKKHIIILNKADLADPK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + + Q + I + + H T++
Sbjct: 67 -LTSDWILSYQQEGTAAIEVDAK------------------------HDTKL-------- 93
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ + N +RS +SD + +Y R V N + M +G+PN
Sbjct: 94 -------TKLNNLIRS----------------ELSDKIAKYERNGVKNFQIRAMCIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+I+N + GK V V G K GVT++ Q + I +LDTPGI P+I
Sbjct: 131 VGKSTILNKMV------GKKVAVTGNKPGVTKN---QNWLKTDYGIDLLDTPGILWPKIS 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL 283
+ + GM+LA ++D + ++A Y L +L R + +NL
Sbjct: 182 DPKVGMKLALSGAIKDKIYPPDDVAIYALDFLQANYLDRVMSVYNL 227
>gi|15895038|ref|NP_348387.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum ATCC 824]
gi|15024731|gb|AAK79727.1|AE007685_3 Predicted GTPase, YLQF B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
Length = 283
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I ++LK VD VIE+ D+R+ ++ N + S+ +P +++LNK DL +
Sbjct: 13 MAKTTREIRENLKLVDAVIEIRDARIVYSSSNPDIN-SICKDKPRIILLNKFDL---AEK 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S+ + V+ S I N +G+ I P L +
Sbjct: 69 SITDNWVKALSSESIRAIPVNALE--GRGLNSIKPALNEL-------------------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ P L DNM + Y VMVVG+PNVG
Sbjct: 107 --------------------------LKPKL----DNMA-AKGIQNYIIRVMVVGIPNVG 135
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN M K K VG K GVT+S + I I ++DTPG+ P+ + +
Sbjct: 136 KSSFIN-----KMAKNKVAKVGNKPGVTKS---KQWIKTNIGIELMDTPGVLWPKFQDQK 187
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ +L + + ++ + L++ ++D ++ + A K
Sbjct: 188 VGLNLAFTGAIKDEIMDIEELALKLVQFLQKNYPEKLMERYKLEDINEDPLINMNNIAAK 247
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + ++ N V + I ++ FR G G + L+R
Sbjct: 248 RGALLKGGEIDYNRVSI---------IIVDEFRSGKIGKISLER 282
>gi|429861850|gb|ELA36514.1| mitochondrial gtpase [Colletotrichum gloeosporioides Nara gc5]
Length = 359
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 95/349 (27%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL-INSKHESLI 63
L+DI L V +V+E D R+P T N +L +++ R ++V RDL +S E I
Sbjct: 52 LRDISSRLSEVGLVLECRDYRVPITSWNPILDRAIAG-RARIVVYTHRDLGTDSPRE--I 108
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E+ +R+ + T P ++H++ + + +VVG+P
Sbjct: 109 EQALRRFHRGQTAAGGTPA------------PEIRHVAQGID-----SLTGVRALVVGMP 151
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
NVGKS+++N LR M+K P+V +
Sbjct: 152 NVGKSTLLNKLRKHGMQK----------------------------------KPSVAR-- 175
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEK-------PLIYILDTPGISLP 234
VG + GVTR + S V+I SEK +++LDTPG+ +P
Sbjct: 176 -----------------VGAQPGVTRKLSSPVRILDSEKDGGAGLGEGVFVLDTPGVFMP 218
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ E ++LA +++D + + +ADY+L+ +N Y + +P++++ L
Sbjct: 219 YVSEAESMVKLALVGSVKDDRIPMVILADYLLYRMNLADPSVYAKY---SDPTNEVNDFL 275
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K K + ++ S A ++ +R G G V+LD
Sbjct: 276 QGVASKTGKLKSGGEANAES---------AADWIVKQWRVGQLGKVVLD 315
>gi|167768003|ref|ZP_02440056.1| hypothetical protein CLOSS21_02546 [Clostridium sp. SS2/1]
gi|317498403|ref|ZP_07956698.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429761259|ref|ZP_19293689.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
gi|167710332|gb|EDS20911.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
SS2/1]
gi|291561005|emb|CBL39805.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SSC/2]
gi|316894297|gb|EFV16484.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429184283|gb|EKY25306.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
Length = 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 159/346 (45%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +DI+IE+ D+R+P + RN + Q N + +++LNK D+ + +
Sbjct: 10 MTKAKRMMQENMKLIDIMIELVDARIPLSSRNPDIDQLAAN-KSRLILLNKTDMADERVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ EE +++ +++ TN R+ KGV+
Sbjct: 69 AQWEEYFKEKGFYVAR---TNARS--GKGVK----------------------------- 94
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G +I+ + + + R + + N + M+ G+PN
Sbjct: 95 -----GTQAIV-------------------MDACKEKLERDRKRGIKNRPIRAMIAGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN+L GKA G K GVT+ +K+++ I +LDTPGI P+ +
Sbjct: 131 VGKSTFINSLV------GKACTKTGNKPGVTKG-KQWIKLNKN--IELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + G+RLA +++D ++ + +A ++ YL D + +DE ++D V +L +
Sbjct: 182 DQQVGLRLALIGSIRDEILNQDEMAIELIEYLKNHYQGILADRYQVDE-NEDKVKILEQI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+ R + N + D + ++I +E FR G G + L+
Sbjct: 241 AL-----NRNCKMKGNEL----DYEKASKIVLEEFRNGKLGKISLE 277
>gi|393201741|ref|YP_006463583.1| GTPase [Solibacillus silvestris StLB046]
gi|406664618|ref|ZP_11072393.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
gi|327441072|dbj|BAK17437.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387466|gb|EKB46890.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
Length = 317
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 151/351 (43%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VDIV E+ D+R+P + RN ++ + + +P +L+LNK+D+ +
Sbjct: 10 MAKARRQVSESLKLVDIVFELVDARLPLSSRNPMIDEVIHQ-KPRLLILNKQDMAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNC--RNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV 117
E++ R+ + ++ F + KG+Q + Q I +D R
Sbjct: 65 ---EQETRRWIQYFADRGFKAVAINSLEGKGLQAVTKAAQEILADKWER----------- 110
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
++S MK +A+ M+VG+P
Sbjct: 111 ----------------MKSKGMKP-RAI------------------------RAMIVGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN L ++ K +P GVT++ +K+ ++ I +LDTPGI P+ +
Sbjct: 130 NVGKSTLINRLAKKNLAKTGNMP-----GVTKA-QQWIKVGKE--IELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ E G +LA ++D ++ ++A Y L +L R + + + S+++V
Sbjct: 182 DQEVGYKLALTGAIKDTIMNMEDLAVYGLRFLETHYPTRMEERYKISSVSEELV------ 235
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGE-----VARIFIEHFRKGSFGSVMLD 343
FD R+F GE V+ + + R+ + G + D
Sbjct: 236 --------ETFDAIGKLRRVFGQGGEIDYDQVSVLIVRDIREQNLGKLTFD 278
>gi|168188038|ref|ZP_02622673.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
gi|169294120|gb|EDS76253.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
Length = 280
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD+VIE+ D+R+ + N + S+ N +P +++LNK DL E
Sbjct: 10 MAKTRREIKENLKFVDVVIEIRDARIVKSSANPDID-SICNNKPRIILLNKSDL---SEE 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + + K + +V+ NC KG+ I PT
Sbjct: 66 KITRKWIDKLSNDSVKVLSVNC--VTGKGLNNIKPT------------------------ 99
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
IN L + KA ++ N+T T MVVG+PNVG
Sbjct: 100 ----------INELLKEKHDRLKAKGLV--------NIT---------TRAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN M K VG + GVT+ ++ I K I +LDTPG+ P+ ++
Sbjct: 133 KSSFIN-----KMAKNNTAKVGDRPGVTK---NKQWIKTKMGIELLDTPGVLWPKFEDES 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L + ++ + LD S D + +
Sbjct: 185 VGLDLAFTGAIKDEIMDIETLAFKLIGKLQEEYPEKLMERYKLDSLSQDTLENMDNIG-- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S ++ D V+ + ++ FR G G++ L+R
Sbjct: 243 ---RKRGAVISGGNI----DYNRVSVMILDEFRGGKLGAISLER 279
>gi|138894725|ref|YP_001125178.1| ribosomal biogenesis GTPase [Geobacillus thermodenitrificans
NG80-2]
gi|134266238|gb|ABO66433.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
Length = 286
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 128/297 (43%), Gaps = 70/297 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +D+ E+ D+R+P + RN ++ + + +++LNK D+ +
Sbjct: 11 MAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMID-DILGQKTRLILLNKADMAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +++ RY R + T + +
Sbjct: 66 -------------------------------------EAVTEQWIRYFRDQ-GRTAIAID 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYN---TTVMVVGVP 177
G I+ A + + + D + + N ++VG+P
Sbjct: 88 AQSGTGVKQIVAAAK----------------EMVKDKFEKMRAKGIKNPRPVRALIVGIP 131
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN L H+ K G K GVT++ +K+ ++ + +LDTPGI P+ +
Sbjct: 132 NVGKSTLINRLAGRHIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPGILWPKFE 183
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ + G RLA ++D ++ ++A Y L +L+ R + + LD DDIV L
Sbjct: 184 DEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF 240
>gi|358064079|ref|ZP_09150668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
gi|356697712|gb|EHI59283.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
Length = 283
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 148/346 (42%), Gaps = 82/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D++IEV D+R+PF+ RN + + QN + +++LNK DL N +
Sbjct: 10 MTKAKRAMKEDIKLIDLIIEVVDARVPFSSRNPDIDELGQN-KARIVLLNKSDLSNERWN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + + H VI N R+ G+++I +Q
Sbjct: 69 DAWAEWFKSQDCH---VIKVNSRS--GAGLKQINSVVQ---------------------- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ + + R R + N V MVVG+PN
Sbjct: 102 -------------------------------EACKEKIERDRRRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAV-PVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN+ GKA G K GVT+ +++++ + +LDTPGI PR +
Sbjct: 131 VGKSTFINSF------AGKACTKTGNKPGVTKG-NQWIRLNKS--LELLDTPGILWPRFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
N E G+ LA ++ D ++ + +A +L ++ NYR V +D L +
Sbjct: 182 NQEVGLHLAFIGSINDEILNKEEMAVELLKFM--MENYRPVMEERYQIEGEDPYKALEQI 239
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A + + ++ D + A +F++ FR G G V L+
Sbjct: 240 ARVRSCLAKGGEL---------DVSKAANLFVDDFRSGKLGRVTLE 276
>gi|323702666|ref|ZP_08114327.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333923310|ref|YP_004496890.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532329|gb|EGB22207.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333748871|gb|AEF93978.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 282
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++ LK VD IE+ D+R+P + RN ++ Q V N +P +++LNK DL +
Sbjct: 12 MAKAKRQVQDALKLVDAAIELLDARIPVSSRNPMIDQIVGN-KPRLVILNKSDLADP--- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
N+T+ + ++ V V+
Sbjct: 68 ------------------------------------------NLTKQWQKQLERPNVKVI 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRT--EVYNTTVMVVGVPN 178
+ + I K VP + +L ++D M + T MV+G+PN
Sbjct: 86 AIDTIKGEGI------------KEVPRMASL-LVADQMAKLAAKGRRPRATRCMVLGIPN 132
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS IN L KA G GVT+ +K++ + +LDTPGI P+ ++
Sbjct: 133 VGKSSFINRLVGR-----KATKTGNLPGVTKG-QQWIKVAGS--LELLDTPGILWPKFED 184
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E G +LA +++ + +A +L +L + + L + + DI LL
Sbjct: 185 PEVGFKLAVTGAIKEQVFNFYEVALKLLQWLTEKNPDQIKVRYKLTDLAPDIPTLLQDIG 244
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+R ++ V D + A++ I+ FR+G G LD
Sbjct: 245 A-----RRGLLMAGGVV----DELKAAQLIIKEFREGLLGRYTLD 280
>gi|196247656|ref|ZP_03146358.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
gi|196212440|gb|EDY07197.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
Length = 288
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 128/297 (43%), Gaps = 70/297 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +D+ E+ D+R+P + RN ++ + + +++LNK D+ +
Sbjct: 13 MAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMID-DILGQKTRLILLNKADMAD---- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +++ RY R + T + +
Sbjct: 68 -------------------------------------EAVTEQWIRYFRDQ-GRTAIAID 89
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYN---TTVMVVGVP 177
G I+ A + + + D + + N ++VG+P
Sbjct: 90 AQSGTGVKQIVAAAK----------------EMVKDKFEKMRAKGIKNPRPVRALIVGIP 133
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN L H+ K G K GVT++ +K+ ++ + +LDTPGI P+ +
Sbjct: 134 NVGKSTLINRLAGRHIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPGILWPKFE 185
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ + G RLA ++D ++ ++A Y L +L+ R + + LD DDIV L
Sbjct: 186 DEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSSHYPERITERYGLDRIPDDIVALF 242
>gi|424780492|ref|ZP_18207365.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
gi|422842894|gb|EKU27341.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
Length = 285
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 152/352 (43%), Gaps = 94/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDIVIEV D+R+P + +N +L + +Q +P +++LNK DL +
Sbjct: 11 MAKARREVIEKLKLVDIVIEVVDARLPKSSQNPMLDKIIQQ-KPRLVLLNKADLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E+ +K Q+H E +
Sbjct: 67 ----EETKKWQAHF------------------------------------EAQGMACLA- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHI-SDNMTRYHRTEVYNTTV--MVVGVP 177
INA +K+ I PT + + +D + R + + + M++G+P
Sbjct: 86 ----------INAQEGKGIKQ-----ITPTCEKVLADKIQRRREKGMKDKAIRAMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L ++ K G K GVT++ +KI +K + +LDTPGI P+ +
Sbjct: 131 NVGKSTVLNRLIRKNVAK-----TGNKPGVTKA-QQWLKIDKK--LELLDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIV 291
E G +LA ++D L+ +IA + L + +R Y ++ + P +++
Sbjct: 183 EEETGYKLALTGAIKDDLLHFDDIALFGLEFFDRHYHEALWKRYAFIPEEDRTLPYPELL 242
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
ML+ + KR F D +++ FI+ R G LD
Sbjct: 243 MLMTE--------KRGFR---------DDYERMSKQFIQDVRTNKLGRYTLD 277
>gi|433655064|ref|YP_007298772.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293253|gb|AGB19075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 278
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 150/345 (43%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE++LK VDIV E+ D+R+P + RN L+ + V+N + +++LNK DL +S
Sbjct: 9 MAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDELVKN-KKRIILLNKADLSDS--- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
V K+ +N +
Sbjct: 65 ----------------------------AVNKM-------------------WNEYFKKL 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPNV 179
G+ ++ IN+L SS +K+ + TL+ S+ + R + + M+VG+PNV
Sbjct: 78 GIASLN----INSLNSSSIKEIYEL----TLKECSNIIDRKRQKGIKAKLRAMIVGIPNV 129
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN+L K K+ G K GVT++ + P +LDTPGI P+ ++
Sbjct: 130 GKSTLINSL-----SKTKSAKTGNKPGVTKAK----QWIRTPYFDLLDTPGILWPKFEDE 180
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G+ LA A ++D L+ +A +L L + + + + D+ LL +
Sbjct: 181 HVGIMLALTAAIKDELLNHEELAFSLLKILKQEYPELLMQRYKIQYIDIDLYDLLREIGK 240
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + DT ++I +E FR G G + L+R
Sbjct: 241 MRGCLSSGGHI---------DTERTSKIIVEDFRTGKLGKISLER 276
>gi|337736979|ref|YP_004636426.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
gi|384458486|ref|YP_005670906.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|325509175|gb|ADZ20811.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|336292584|gb|AEI33718.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
Length = 283
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I ++LK VD VIE+ D+R+ ++ N + S+ +P +++LNK DL +
Sbjct: 13 MAKTRREIRENLKLVDAVIEIRDARIVYSSSNPDIN-SICKDKPRIILLNKFDL---AEK 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S+ + V+ S I N +G+ I P L +
Sbjct: 69 SITDNWVKALSSESIRAIPVNALE--GRGLNSIKPALNEL-------------------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ P L DNM + Y VMVVG+PNVG
Sbjct: 107 --------------------------LKPKL----DNMA-AKGIQNYIIRVMVVGIPNVG 135
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN M K K VG K GVT+S + I I ++DTPG+ P+ + +
Sbjct: 136 KSSFIN-----KMAKNKVAKVGNKPGVTKS---KQWIKTNIGIELMDTPGVLWPKFQDQK 187
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ +L + + ++ + L++ ++D ++ + A K
Sbjct: 188 VGLNLAFTGAIKDEIMDIEELALKLVQFLQKNYPEKLMERYKLEDINEDPLINMNNIAAK 247
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + ++ N V + I ++ FR G G + L+R
Sbjct: 248 RGALLKGGEIDYNRVSI---------IIVDEFRSGKIGKISLER 282
>gi|310791093|gb|EFQ26622.1| hypothetical protein GLRG_02442 [Glomerella graminicola M1.001]
Length = 359
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 78/350 (22%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
L++I L +V +V+E D R+P T N +L ++V R ++V DL + + +
Sbjct: 34 ALREISSRLSDVGLVLECRDYRVPLTSWNPVLDRAVAG-RERIVVYTHCDL-GADSPAAV 91
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E +R+ S V T Q+++ + R + +T
Sbjct: 92 EHALRRFHRGHSAVSSTP---------QRVV------------FWRKDDPAST------- 123
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+++ +RS + H D++T +VVG+PNVGKS+
Sbjct: 124 ----KQLLSEIRS--------------VAHSVDSLT--------GMRALVVGMPNVGKST 157
Query: 184 IINALRSSHM-KKGKAVPVGPKAGVTRSVMSQVKISEKPL---------IYILDTPGISL 233
++N LR M KK VG + GVTR + S V+I + +++LDTPG+ +
Sbjct: 158 LLNKLRVHGMHKKPNVAKVGAQPGVTRKLGSPVRILDSEGDGGLGLGEGVFVLDTPGVFM 217
Query: 234 PRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
P + E ++LA +++D + +ADY+L+ LN T Y + EP++++ L
Sbjct: 218 PYVSEAEDMVKLALVGSVKDDRIPMEILADYLLYRLNLTDPGAYAKY---SEPTNEVNDL 274
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L A + K + +++S A I+ +R G+ G +LD
Sbjct: 275 LLGVARRTGKLKAGGEANADS---------AADWIIKQWRAGNLGKFVLD 315
>gi|452995936|emb|CCQ92337.1| ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 286
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 144/347 (41%), Gaps = 82/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL----IN 56
M + + +E+ LK +DIV E+ D+R+P +N ++ + V + +P +++LNK DL +
Sbjct: 10 MAKARRQVEERLKIIDIVFELLDARIPSASQNPMMDEIVGH-KPRIILLNKYDLSDPAVT 68
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
+ S E K H + + R L T+ +++++T+
Sbjct: 69 KEWVSFFERK----GGHALPIDSLSGRG---------LETIPKLAESLTQS--------- 106
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ R + KG+A+ M+VG+
Sbjct: 107 --------------VQDKRQAKGMKGRAI------------------------RAMIVGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSS+IN + K G + GVT+S Q I + +LDTPGI P+
Sbjct: 129 PNVGKSSLIN-----RLAKRSVAQTGDRPGVTKS---QQWIKTGKNLDLLDTPGILWPKF 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
G LAA ++D ++ ++A + L + R V+ + L+E D + +L +
Sbjct: 181 GEERVGYLLAATGAIRDEILDIYDVALFTLKIMKERYEKRLVERYGLEEGVSDPLQILEE 240
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ +R +V D A +F++ R G G + L+
Sbjct: 241 IGRKRGILRRGGEV---------DMERSADLFLKELRNGKLGPISLE 278
>gi|342320651|gb|EGU12590.1| Hypothetical Protein RTG_01140 [Rhodotorula glutinis ATCC 204091]
Length = 528
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++V G+PNVGKSSI+NALR + + +GKA + G TR + + +KI+ P +YI DTPG
Sbjct: 147 MLVAGMPNVGKSSILNALRRTGVGRGKAASTSSEPGHTRRLSTVIKIATSPPVYIYDTPG 206
Query: 231 ISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
I +P + E M+LA +++ L + + +Y+L+ L R + N DE
Sbjct: 207 IMVPYLGKGVYGQEAAMKLALTGGIKESLFEKELVGEYLLWRLRLRHEMRDEGWSN-DEL 265
Query: 287 SDDIVMLLAKAAIKKKWFKRAFD--VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + F A +S+ PDT R I FR+G G LD
Sbjct: 266 WRRLALPSGTPLEDPEEFYSALARRLSAMQRGGIPDTDFAGRWLIRAFREGKLGRWTLD 324
>gi|258511349|ref|YP_003184783.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478075|gb|ACV58394.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 152/354 (42%), Gaps = 86/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ +D+V+E+ D+R+P + R+ +L + +N +P ++VL + DL +
Sbjct: 10 MAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARN-KPRLMVLTRVDLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P+C T Q + R+ R V +
Sbjct: 65 ------------------------PHC--------TEQWVE----RFQREGV-------I 81
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P +NA +++ + L N R E T M+ G+PNVG
Sbjct: 82 AIP-------VNARTGQGLREFRRA--LDEFVEAKMNRARARGIERAVTRGMICGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ +N L + K G + GVTRS + +++ L LDTPG+ P++ N E
Sbjct: 133 KSTFVNQLAGRAVAK-----TGDRPGVTRS-LQWIRVGRTEL---LDTPGVLAPKLANDE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNY------RYVDFFNLDEPSDDIVMLL 294
G++LAA +++ + + Y+L YL +G Y RY ++ P + +
Sbjct: 184 QGLKLAASGAVKEEIFEAYEVCAYVLAYL--SGRYPDALAKRY--GLRVETPIEWTNLQD 239
Query: 295 AKAAIKKKWFK-----RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+ + WF+ R V+ +V D VA++ I F++G G V L+
Sbjct: 240 VWPAV-QPWFEHIGRARGALVAGGAV----DEERVAKMVIRDFQEGRLGPVSLE 288
>gi|302794602|ref|XP_002979065.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
gi|302819739|ref|XP_002991539.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300140741|gb|EFJ07461.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300153383|gb|EFJ20022.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
Length = 348
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 64/258 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++DI++ K VD+V+E+ D+R+P + N L + + + V+V+NK DL +S
Sbjct: 18 MVKAMRDIQQRFKYVDLVLEIRDARIPLSSANDELGEFISK-KKHVIVMNKMDLASS--- 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++I + ++ I+ N + + + + I + + + E VM+
Sbjct: 74 NMIHNWKKYFEAQGQVPIYVNAHSKHS-----VHSMVVDIKERLAGAIQKEA-TLLVMIA 127
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS + NAL Y TV G P
Sbjct: 128 GIPNVGKSVLTNAL--------------------------------YQATVQ--GRP--- 150
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
K VGP GVT+ ++S KI + P IY+LDTPG+ +P I ++E
Sbjct: 151 ----------------KKAQVGPLPGVTK-IISGFKIGQCPSIYLLDTPGVLIPNIKSVE 193
Query: 241 CGMRLAACATLQDHLVGE 258
G++LA ++D ++GE
Sbjct: 194 TGLKLAITGAVKDSVIGE 211
>gi|319649583|ref|ZP_08003739.1| GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398745|gb|EFV79427.1| GTPase [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VDI+ E+ D+R+P++ RN ++ + +Q+ +P +++LNK D+ +
Sbjct: 10 MAKARRQVTEKLKLVDIIFELVDARIPYSSRNPMIDEIIQH-KPRLVLLNKADMAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E +K H + KG++ + Q
Sbjct: 65 ---KEATKKWIKHFED-----------KGIRALAINSQA--------------------- 89
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G I++A +S LQ D M + + M+VG+PN G
Sbjct: 90 ---GQGMKEIVSASQS-------------ILQEKFDRM-KAKGVKPRAIRAMIVGIPNAG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + P GVT++ +K+ ++ + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIARTGNTP-----GVTKA-QQWIKVGKE--LELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA ++D ++ ++A Y L +L R + + LDE +DIV + K
Sbjct: 185 VGLKLALTGAIKDTILNLQDVAVYALRFLGLRYPDRLHERYQLDEIPEDIVEVFDKIGRL 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ D +V + I FR G + L+
Sbjct: 245 RGCLMGGGEI---------DYDKVTELVIREFRSEKLGPITLE 278
>gi|345859699|ref|ZP_08812033.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
gi|344327156|gb|EGW38600.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
Length = 274
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 80/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + ++ VD+V+E+ D+R+P + RN +L + + N +P +L+LNK DL ++
Sbjct: 10 MAKARRLLIEQIRWVDVVLELADARIPISSRNPMLDKLLGN-KPRILLLNKADLADTNWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S ++R + T GV++I
Sbjct: 69 SKWLTQLRASSPAFAVSATTGT------GVKQI--------------------------- 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
VP + + + +R ++ + I M + VM+VG+PN+G
Sbjct: 96 -VPELERMVLAKQIRQAN-------------KGIRPQMIK----------VMIVGIPNIG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L K VG K GVTR V+I E+ + +LDTPG+ P+ + E
Sbjct: 132 KSSLINQLTGGAQAK-----VGNKPGVTRG-NQWVRIHER--VELLDTPGMLWPKFEVPE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAA ++D + ++I + L+ +D+ P + ++ A +
Sbjct: 184 VGQKLAALGAIKDDV---LDIEELSLW---------IIDWLKAYSPDALLRYQISDAEVT 231
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ R + R+ DT + A+I + R G G + +DR
Sbjct: 232 LETLGRKRGCLIHGGRV--DTLKAAQILLRELRMGQLGPITMDR 273
>gi|452822796|gb|EME29812.1| GTP-binding protein [Galdieria sulphuraria]
Length = 319
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 151/361 (41%), Gaps = 81/361 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKH 59
M + ++I++ L DI+IEV D+R+P T + Q P +++LNK DL
Sbjct: 19 MYKASREIKEKLALADIIIEVRDARIPLTSAAVAEVSQLPSRTIPRIILLNKADLSEPLL 78
Query: 60 ESLIEEKVRK---EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
S ++ K + S+ S + F+ CK VQ+ HIS
Sbjct: 79 LSKAMCRLAKGGLKSSYCSILPFS------CKQVQR-----NHIS--------------- 112
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
S+++ L AVP+ L+ + T V+V+GV
Sbjct: 113 ------------SVLDTL--------AAVPVRKRLKSLP-------------TKVIVIGV 139
Query: 177 PNVGKSSIINALRSSHMKKGKAVPV------------GPKAGVTRSVMSQVKISEKPLIY 224
PNVGKSS IN L+ + K +PV G GVT++V V +S +P IY
Sbjct: 140 PNVGKSSFINLLQRHCRNQWKDIPVEHTIDDGGVAKVGKHPGVTKNVAGFV-VSHQPYIY 198
Query: 225 ILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
+LD+PG+ PR+D+ E GM+L ++D V I ++L L + + +D
Sbjct: 199 MLDSPGVMYPRLDSWESGMKLIITGCIRDQSVDSIAACQFLLNMLIERNDSVAMSRLGID 258
Query: 285 EPSDDIV--MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
+I ++ K A + + F++ D ++ FR+GS G L
Sbjct: 259 INDWNISAHQVVRKVAHRIRAFQKE---DKEHTHENEDLLRTCIYILKKFRQGSLGCFTL 315
Query: 343 D 343
D
Sbjct: 316 D 316
>gi|149246640|ref|XP_001527745.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447699|gb|EDK42087.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 372
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 59/296 (19%)
Query: 14 NVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV--RKEQ 71
+D+++EV DSR P N L + + + R ++L +K+DL S+++ KV R
Sbjct: 38 QLDLILEVRDSRAPIATTNVLFDKLLASKRKLILY-SKKDL------SILKPKVLQRWHG 90
Query: 72 SHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
+ + +F +CR+ +CK +I+ + I + + ++++G+PNVGKS++
Sbjct: 91 AKNEDYMFIDCRSRRDCK---RIIDEINKIYNGI---EDKPPLGLRLIIIGMPNVGKSTL 144
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
+N +R ++ + K +I +R
Sbjct: 145 VNTMREVGLRDPEQ------------------------------------KDAISTKIR- 167
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
K G + GVTRS +++S P + + DTPGI LP + + E + L
Sbjct: 168 ------KVAKTGGQPGVTRSTSEIIRLSRDPDLMVYDTPGIFLPTVKDAETMLTLGLIGC 221
Query: 251 LQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
+ D + + +ADY+LF LN + +D P++DI L+ A K+ K+
Sbjct: 222 VHDSFIDPVILADYLLFVLNLQDPSGKLYSAYMDRPTNDIYELMYNIAKKRNTLKK 277
>gi|167758981|ref|ZP_02431108.1| hypothetical protein CLOSCI_01327 [Clostridium scindens ATCC 35704]
gi|336422972|ref|ZP_08603111.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
gi|167663388|gb|EDS07518.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium scindens
ATCC 35704]
gi|336006818|gb|EGN36850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 282
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N M+L LNK D
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKSRMIL-LNKAD------- 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E+K +D Y R + + VV
Sbjct: 62 -LAEDK---------------------------------WNDAWAEYFREKGF----FVV 83
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+N+ + +K + V + + M R + + N V MVVG+PN
Sbjct: 84 K---------LNSKKGGGLKSIQGV----IQEACKEKMERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ INAL K G K GVT+ ++++++ + +LDTPGI P+ ++
Sbjct: 131 VGKSTFINALAGKACAK-----TGNKPGVTKG-KQWIRLNKQ--VELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDEPSDDIVMLLAK 296
+ G+RLA +++D ++ +A ++ +LN NY V + +++ EPSDD ++LA
Sbjct: 183 QKVGLRLAFIGSIKDEILNTEELAAELIKFLN--ANYPGVLEEKYSV-EPSDDAYVMLAG 239
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A + + ++ DT + A + ++ FR G G + L+
Sbjct: 240 IARSRNCLLKGSEL---------DTEKAALLLLDDFRNGKLGRLTLE 277
>gi|253681828|ref|ZP_04862625.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
gi|253561540|gb|EES90992.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
Length = 280
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 80/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VDIVIE+ D+R+ + N + +N +P +++LNK DL
Sbjct: 10 MAKTRREIKENLKFVDIVIEIRDARIVKSSANPDIDDICKN-KPRIILLNKSDLS----- 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNC---KGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
EEKV KE F N NC KG+ I P I+D + H +
Sbjct: 64 ---EEKVTKEWIKKLSNEFIRVANVNCVTGKGLNSIKPM---INDLLKEKH------DRL 111
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
GV N+ T MVVG+P
Sbjct: 112 RAKGVVNI------------------------------------------TTRAMVVGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS IN M + VG K GVT+ ++ I K I +LDTPG+ P+
Sbjct: 130 NVGKSSFIN-----KMARNNTAKVGDKPGVTK---NKQWIKTKMGIELLDTPGVLWPKFQ 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + G+ LA ++D ++ +A ++ L R ++ + L+ S+D + +
Sbjct: 182 DEQVGLNLAFTGAIKDEIMDIETLAFKLIEKLQEEYPERLMERYKLNSLSEDTLENMNNI 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S ++ D V+ + ++ R G G + L+R
Sbjct: 242 G-----RKRGAVISGGNI----DYNRVSVLILDELRGGKLGPISLER 279
>gi|315640708|ref|ZP_07895810.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
gi|315483463|gb|EFU73957.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
Length = 298
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 146/349 (41%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VD+V E+ D+R+P + RN +L Q VQ+ +P V++LNK DL +
Sbjct: 18 MAKARREVGEKIKFVDLVFELVDARLPLSSRNPMLDQIVQH-KPRVVLLNKADLAD---- 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + RK Q+ Y + Y T
Sbjct: 73 ---ESQTRKWQA----------------------------------YFESLGYETLACNA 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N K+ + A R+ K+ + + + I R MV+G+PNVG
Sbjct: 96 KETNTTKAVLAKAKRTLKEKRARDLE-----RGIQARAIR----------AMVLGIPNVG 140
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+I+N L K G K GVT+ +++ + + +LDTPGI P+ ++ E
Sbjct: 141 KSTIMNRLVGK-----KIAQTGNKPGVTKG-QQWLRVGNE--LELLDTPGILWPKFEDQE 192
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL---DE--PSDDIVMLLA 295
G +LA ++D L+ +IA Y L + R + L DE P D++M +
Sbjct: 193 IGKKLALTGAIKDQLLHLDDIALYGLEFFTTYYPGRISQRYGLKIEDEQLPVPDLLMSVT 252
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K ++ ++RA + F+ R+G G LDR
Sbjct: 253 KKMGLREDYERA-----------------SERFLLEVRQGKLGRFTLDR 284
>gi|373454398|ref|ZP_09546264.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
gi|371935673|gb|EHO63416.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
succinatiphilus YIT 11850]
Length = 285
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 78/338 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE HLK VD+V E+ D+R+P + N ++++ V+ +P +++LNK DL + +
Sbjct: 17 IEDHLKAVDVVAELLDARIPASSANPMVEELVKG-KPRIVILNKADLADPRQ-------- 67
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
+D ++R M VG K
Sbjct: 68 ---------------------------------TDRWVSFYRKRNIPVVPMSVGN-GKNK 93
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSII 185
+++ +R + A PIL +++R + N +V M++G+PNVGKSS+I
Sbjct: 94 KKLLSLIRET------AKPIL----------DKWYRKGLKNRSVRLMILGIPNVGKSSLI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N L + + P G TR V++SE + +LDTPG+ P+ D+ +RL
Sbjct: 138 NFLAGTAAARTANTP-----GHTRG-KQWVRLSEG--LDLLDTPGVLWPKFDDQTAALRL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
AA + + + +L L T + +++D+ + D +LL A +
Sbjct: 190 AATGAIAGDVFNPDEVVPVLLSSLAETEPQVLKEVYHIDDVNQDPQLLLEAAG-----RR 244
Query: 306 RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R + ++ D E A + FR G G + LD
Sbjct: 245 RGCLLPGGAIDY--DRAETA--VLHDFRSGKLGKITLD 278
>gi|302920338|ref|XP_003053049.1| hypothetical protein NECHADRAFT_77664 [Nectria haematococca mpVI
77-13-4]
gi|256733989|gb|EEU47336.1| hypothetical protein NECHADRAFT_77664 [Nectria haematococca mpVI
77-13-4]
Length = 337
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKP------- 221
M+VG+PNVGKS+++NALR + + + KA G +AGVTR + + V+I E
Sbjct: 129 AMIVGMPNVGKSTLLNALRRAGIPGQTAKAAKTGDQAGVTRKMSTPVRILEPEDRGGVGD 188
Query: 222 LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
+ILDTPGI P ID+ E +++A ++ LV ++ +ADY+L+ +N Y +
Sbjct: 189 GAFILDTPGIFQPYIDDGETMIKIALTQGIKKGLVRDVILADYLLYRMNLVDPTLYEKYC 248
Query: 282 NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM 341
P+++I LL A ++ KR P A + H+R+G+ G +
Sbjct: 249 ---PPTNEIDELLGAIARREGKVKRG---------NHPVLSHAADRLLFHWREGNMGKFV 296
Query: 342 LD 343
LD
Sbjct: 297 LD 298
>gi|260887867|ref|ZP_05899130.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|330838732|ref|YP_004413312.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|260862373|gb|EEX76873.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|329746496|gb|AEB99852.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
Length = 302
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 140/336 (41%), Gaps = 73/336 (21%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+E++LK VD+V+E+ D+R+P N +L++ + + +P V+ LNKRDL + E
Sbjct: 27 VEENLKLVDVVVELLDARIPAASSNPMLREIIGD-KPRVVALNKRDLADENMTRRWLEHF 85
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
R ++ I V + + KG++++L T R Y T +V
Sbjct: 86 RAKK--IPAVALDSV---SGKGMKELL----------TLIEREAKYRTERLV-------- 122
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
KG A VM++G+PNVGKSS+IN
Sbjct: 123 ------------SKGVAA---------------------RKARVMILGIPNVGKSSLINR 149
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L + K K GVTR+ ++I + +LDTPGI P+ ++ G++LA
Sbjct: 150 LAGAAKAK-----TADKPGVTRA-KQWIRIGAD--VDLLDTPGILWPKFEDPRVGLKLAF 201
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRA 307
+ D + ++A +L L R R + F E + L A + KR
Sbjct: 202 TGAVNDEIYDLESVAHLLLATLRRDHQERLQERFKFKEALPETTEGLMDAIGR----KRG 257
Query: 308 FDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + D +V I + FR G FG + LD
Sbjct: 258 CLLKGGRI----DFEKVQHILLAEFRMGKFGKISLD 289
>gi|315302907|ref|ZP_07873643.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
gi|313628721|gb|EFR97118.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
Length = 287
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 76/353 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L + R ++ +++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLEQHYPDRLENWLKVEKVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELDIS 352
K+ R D PD A + R+ G + D E DI
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFDFPNWEEDIE 287
>gi|297544724|ref|YP_003677026.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842499|gb|ADH61015.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 277
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 148/344 (43%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD++ E+ D+R+P + RN + V+N + ++L LNK DL +
Sbjct: 9 MAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDDIVKNKKRLIL-LNKADLADDVIT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E ++ KG++ I +++T + E+ T V
Sbjct: 68 DLWIEYFKE------------------KGIEAIK------VNSITGFGLKEINEATQRVC 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I+ R M +P L+ I +VGVPNVG
Sbjct: 104 -------QDILEKKRQKGM--------IPRLRGI------------------IVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P ILDTPGI P+ D+ E
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRT-LHWIKT---PYFDILDTPGILWPKFDDKE 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + + +D+ + LL +
Sbjct: 182 TGIMLAITGAIKDEILNIEEIALNLVAVLKKYYPHYLMSRYKIDKIVMEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---KKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGKISLER 276
>gi|160947173|ref|ZP_02094340.1| hypothetical protein PEPMIC_01106 [Parvimonas micra ATCC 33270]
gi|158446307|gb|EDP23302.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas micra ATCC
33270]
Length = 293
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 77/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +I LK VDIV E+ DSR+P + +N ++ +++ +P +++LNK D+ +
Sbjct: 10 MKKTMDNIRSSLKLVDIVGEIIDSRIPISSKNPVIDDVLKD-KPRIMILNKSDMAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + +K S Y+R + Y V
Sbjct: 65 ---ENETKKWLS----------------------------------YYRKKGYGAVV--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
++AL S + K +V + ++D + + T+ M+VG+PN
Sbjct: 85 ----------VDALHSKGLDKIYSV----AKEMLADKFKKLEEKNLSAKTIRMMIVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN++ K K+ +G + GVT+ V I K + +LDTPG+ P+ ++
Sbjct: 131 VGKSTFINSI-----SKRKSAKIGDRPGVTKQVQW---IKTKNDLELLDTPGVLWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
G+ LA ++D ++ N+A + LN+ + +NL E S + + L
Sbjct: 183 ERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRDVNILKNRYNLSEDSYEDTLYLMDEI 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K R + N + F +VA + ++ FRK G + L+
Sbjct: 243 GK----NRGAILKKNEIDYF----KVANLVLDDFRKVKLGRITLE 279
>gi|384175346|ref|YP_005556731.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594570|gb|AEP90757.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 282
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AVVTQQW-KEHFEKQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|354544939|emb|CCE41664.1| hypothetical protein CPAR2_802140 [Candida parapsilosis]
Length = 370
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 64/285 (22%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE--QS 72
+D+++EV D R P N L + + R ++L +K+DL S+++ + K+ S
Sbjct: 38 LDLILEVRDCRAPLATTNVLFDKLLSTKRKLILY-SKKDL------SILKPDLLKKWHNS 90
Query: 73 HISEVIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
E +F +CR+ +CK +I+ + I ++ + M++G+PNVGKS+++
Sbjct: 91 KNEEFMFIDCRHRGDCK---RIINKMTQIYES---FENKPPLGLRSMIIGMPNVGKSTLV 144
Query: 132 NALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSS 191
N +R VG+ + S+ +R
Sbjct: 145 NTMRQ-------------------------------------VGLGRDNRDSVSTKVR-- 165
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
K G + GVTRS +++S P I + DTPGI LP + + E + L +
Sbjct: 166 -----KVAKTGGQPGVTRSTSEIIRLSRDPDIMVYDTPGIFLPTVKSPETMLSLGLVGCI 220
Query: 252 QDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLL 294
D + + +ADY+LF LN + Y D+ + P++DI L+
Sbjct: 221 HDSFIDPVVLADYLLFLLNLQDSSGKLYGDY--MSHPTNDIYELM 263
>gi|289578448|ref|YP_003477075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
gi|289528161|gb|ADD02513.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
Length = 277
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 148/344 (43%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD++ E+ D+R+P + RN + V+N + ++L LNK DL +
Sbjct: 9 MAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDDIVKNKKRLIL-LNKADLADDVIT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E ++ KG++ I +++T + E+ T V
Sbjct: 68 DLWIEYFKE------------------KGIEAIK------VNSITGFGLKEINEATQRVC 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I+ R M +P L+ I +VGVPNVG
Sbjct: 104 -------QDILEKKRQKGM--------IPRLRGI------------------IVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P ILDTPGI P+ D+ E
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRT-LHWIKT---PYFDILDTPGILWPKFDDKE 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + + +D+ + LL +
Sbjct: 182 TGIMLAITGAIKDEILNIEEIALNLVAILKKYYPHYLMSRYKIDKIVMEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---KKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGKISLER 276
>gi|46128279|ref|XP_388693.1| hypothetical protein FG08517.1 [Gibberella zeae PH-1]
Length = 327
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 37/185 (20%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPL------ 222
M+VG+PNVGKSS++N LR S + K KA G + G+TR + + V+I E
Sbjct: 129 AMIVGMPNVGKSSLLNTLRRSGLPQKLAKAAKTGGQPGITRKIGTSVRILETEGKDSRRG 188
Query: 223 ----IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV 278
+++LDTPG+ +P +DN E +++A ++ LV + DY+L+ LN+ Y
Sbjct: 189 VGEGVFVLDTPGVFVPYVDNAETMIKIALVQGIKIGLVPAEVLVDYLLYRLNKLNPAFYK 248
Query: 279 DFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +P++ + LL A+K A +F++ +R G G
Sbjct: 249 QY---SKPTNSVEELLTSVAVK----------------------TAASVFLKDWRTGKLG 283
Query: 339 SVMLD 343
ML+
Sbjct: 284 KFMLE 288
>gi|322701293|gb|EFY93043.1| hypothetical protein MAC_00826 [Metarhizium acridum CQMa 102]
Length = 337
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISE-------KP 221
+VVG+PNVGKS+++NALR + +K KA G +AGVTR V + V++ E
Sbjct: 129 ALVVGMPNVGKSTLLNALRRAGTPGRKAKAARTGDQAGVTRRVGTAVRVVEPEDRGGVAA 188
Query: 222 LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
+ +LDTPGI P +++ E +++A ++ L+ + +ADY+LF +NR Y +
Sbjct: 189 GVLVLDTPGIFQPYVEDGETMVKVALAHGVKKGLIPDELLADYLLFRMNRWDPSLYRRYC 248
Query: 282 NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM 341
EP++D+ L A +R + + P+ E A + +R G G +
Sbjct: 249 ---EPTNDVNEFLTAVA------RRDGKLKAGGA---PNWQEAAARVLSQWRDGKLGRHV 296
Query: 342 LDRDFLELDI 351
LD + E DI
Sbjct: 297 LD-ELGEADI 305
>gi|255722093|ref|XP_002545981.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136470|gb|EER36023.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 368
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 63/284 (22%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV--RKEQS 72
+D+VIEV D R P N L + + + ++L +K+DL S+++ +V + +S
Sbjct: 37 LDMVIEVRDCRAPLATTNVLFDRVLVGKKKLIL-YSKKDL------SILKTRVLDKWHKS 89
Query: 73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 132
+ +F +CR+ K ++++ ++ + ++M + M++G+PNVGKS+++N
Sbjct: 90 KNEDYMFIDCRSQ--KDGKRVISEIKKLYNSM---EQPPPLGLRSMIIGMPNVGKSTLVN 144
Query: 133 ALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH 192
LR + G IS + + RT
Sbjct: 145 TLRQVGLSDGDYA--------ISSKIKKVART---------------------------- 168
Query: 193 MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQ 252
G + GVTR+ +++S P I + DTPG+ LP N+E + L +
Sbjct: 169 ---------GNQPGVTRNTSEIIRLSRDPDIMVYDTPGVFLPTAKNVETMLALGLVGCIH 219
Query: 253 DHLVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLL 294
D + + +ADY+LF LN Y ++ +D P++DI LL
Sbjct: 220 DSFIDPVVLADYLLFVLNLQDPSGKLYAEY--IDHPTNDIYELL 261
>gi|333371168|ref|ZP_08463130.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
gi|332976612|gb|EGK13453.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
Length = 296
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 85/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E+ L VD+V E+ D+R+P + RN ++ ++ +P +++L K DL + +
Sbjct: 10 MAKARRQVEEKLNQVDLVFELLDARLPLSSRNPMIGDLIRE-KPRLILLTKSDLADREAT 68
Query: 61 SLIEEKVRKEQSHISEV-IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
L R ++ V I + G+Q+I P + +
Sbjct: 69 RLWAGFFRSDKVRAQPVDILSGA------GIQQIGPISREL------------------- 103
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ +S +KG R HR MVVGVPNV
Sbjct: 104 -----------VKEKLASQTRKG----------------IRRHRIRA-----MVVGVPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L K G + GVTR+ +K+ + +LDTPGI P+ D+
Sbjct: 132 GKSALINRLAGRSTAK-----TGDRPGVTRN-QQWIKLGNG--MELLDTPGILWPKFDDP 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FNLDEPSD-DIVMLL 294
+ G+RLAA +++ ++ I Y+L Y+ RY D + L+ + + +LL
Sbjct: 184 KVGLRLAASGAIKEEVLSVEEIGLYLLNYIAE----RYPDLIRDRYRLNPGENPEARLLL 239
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ ++ ++ D + A + + +R G G + L+
Sbjct: 240 EEVGRRRGCMRKGGEI---------DLEKAAEVVLRDYRSGRLGRISLE 279
>gi|358380989|gb|EHK18665.1| hypothetical protein TRIVIDRAFT_43679 [Trichoderma virens Gv29-8]
Length = 335
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 159 TRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVK 216
T Y + ++VG+PNVGKS+++NALRS+ K G +AGVTR + + V+
Sbjct: 117 TAYEVDSITGLCALIVGMPNVGKSTLLNALRSTGTTGRTTKVAKTGDQAGVTRKIGTSVR 176
Query: 217 ISEK-------PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
+ E +Y+LD+PG+ LP +++ E ++++ ++ L+ + +ADY+L+ +
Sbjct: 177 VVEPEERGGVGAGVYVLDSPGVFLPYVEDGETMIKISLVQGIKKGLIPDEILADYLLYKM 236
Query: 270 NRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFI 329
N + Y + + P++DI L A KR + + V PD GE A +
Sbjct: 237 NLWDPHLYHRYCS---PTNDIHEFLLAVA------KRDGKLKAGGV---PDMGESAARVL 284
Query: 330 EHFRKGSFGSVMLD 343
+RKG G +LD
Sbjct: 285 SEWRKGKLGKYVLD 298
>gi|449450556|ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
Length = 366
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 167 YNTTVMVVGVPNVGKSSIINAL----RSSHMKKGKA--VPVGPKAGVTRSVMSQVKISEK 220
+ TT+M+VG+PNVGKS++ N+L R S +KGK V + G T+++ S +KI+
Sbjct: 137 HATTMMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHAVVSSQPGETKNI-SSLKIASH 195
Query: 221 PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
P IY+LDTPGI P+ID++E +LA ++D LVGE I Y+L +N + Y+
Sbjct: 196 PNIYVLDTPGIFPPKIDDIEVCSKLALTGAIRDILVGEHVIVQYLLTIVNSSVKYK 251
>gi|52080207|ref|YP_078998.1| ribosomal biogenesis GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646014|ref|ZP_08000244.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|404489095|ref|YP_006713201.1| GTPase YlqF [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682148|ref|ZP_17656987.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
gi|81609173|sp|Q65JP4.1|RBGA_BACLD RecName: Full=Ribosome biogenesis GTPase A
gi|52003418|gb|AAU23360.1| GTP-binding domain protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348086|gb|AAU40720.1| GTPase RbgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391764|gb|EFV72561.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|383438922|gb|EID46697.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
Length = 283
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 65/301 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D +S
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKADKADSSVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ E+ I + + N +G+ +ILP +
Sbjct: 69 KAWKQHF--EKDGIPTLAINSV---NGQGLNQILPASKE--------------------- 102
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L K KA + P R R ++VG+PNVG
Sbjct: 103 -------------LLKEKFDKMKAKGVKP----------RAIRA-------LIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + GVT + VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGVT-TAQQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLAA ++D ++ ++A Y L +L R ++L+E ++I L + K
Sbjct: 185 VGLRLAATGAIKDSIINLQDVAVYGLRFLEENYPERLKKRYDLEEIPEEIAALFDEIGKK 244
Query: 301 K 301
+
Sbjct: 245 R 245
>gi|428279199|ref|YP_005560934.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|291484156|dbj|BAI85231.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
Length = 282
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQRW-KEHFEKQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|348029840|ref|YP_004872526.1| ribosomal biogenesis GTPase [Glaciecola nitratireducens FR1064]
gi|347947183|gb|AEP30533.1| ribosomal biogenesis GTPase [Glaciecola nitratireducens FR1064]
Length = 333
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 82/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK+I++ L VDI+IEV D+R+P++ N + + ++ +P + +LNK DL +
Sbjct: 10 MHKALKEIKEALGQVDILIEVLDARIPYSSENPEIAK-IRGDKPCLKILNKADLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K Q+H+ E +GV+ T +DN + +
Sbjct: 66 ----ETTAKWQAHLEEE----------RGVK----TFTTSTDNTAKTKQ----------- 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
II +R + +K +V + M++G+PNVG
Sbjct: 97 ---------IIELIRKTCAQKDASVKTI---------------------NAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT++ Q +I+ I + DTPG+ P+++N
Sbjct: 127 KSTLINILADRVIAK-----TGNEPAVTKN---QQRINLGSGIVLFDTPGVLWPKLENPN 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAI 299
G RLAA ++D + ++ Y YL + + F +D+ P+ +I L AA
Sbjct: 179 TGYRLAASGAVKDTAMEYDDVGFYAADYLIKAYPDLMKERFKIDDLPNTEIEFLELAAA- 237
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR ++ V + ++ + I R G G + L+
Sbjct: 238 -----KRGALMAGGRVNLH----KICEVLINELRSGKLGRITLE 272
>gi|343520555|ref|ZP_08757524.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397513|gb|EGV10047.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 293
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 79/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +I LK VDIV E+ DSR+P + +N ++ +++ +P +++LNK D+ +
Sbjct: 10 MKKTMDNIRASLKLVDIVGEIIDSRIPISSKNPVIDDVLKD-KPRIMILNKSDMAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + +K S Y+R + Y V
Sbjct: 65 ---ENETKKWLS----------------------------------YYRKKGYGAVV--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
++AL S + K +V + ++D + + T+ M+VG+PN
Sbjct: 85 ----------VDALHSKGLDKIYSV----AKEMLADKFKKLEEKNLSAKTIRMMIVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN++ K K+ +G + GVT+ V I K + +LDTPG+ P+ ++
Sbjct: 131 VGKSTFINSI-----SKRKSAKIGDRPGVTKQVQW---IKTKNDLELLDTPGVLWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS-DDIVMLLAKA 297
G+ LA ++D ++ N+A + LN+ + +NL E S +D + L+ +
Sbjct: 183 ERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRDVNILKNRYNLSEDSYEDTLYLMDEI 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R + N + F +VA + ++ FRK G + L+
Sbjct: 243 G-----RNRGAILKKNEIDYF----KVANLVLDDFRKVKLGRITLE 279
>gi|188588618|ref|YP_001920596.1| ribosomal biogenesis GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251780773|ref|ZP_04823693.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188498899|gb|ACD52035.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|243085088|gb|EES50978.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 285
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 151/350 (43%), Gaps = 86/350 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N + +Q +P +++LNK DL
Sbjct: 10 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQG-KPRIILLNKSDLT----- 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E KV K+ ++H++ + R
Sbjct: 64 ---EGKVTKDW-------------------------IKHLTKDEVRVLE----------- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+N L+ +K K P+L +L + R T VMVVG+PNVG
Sbjct: 85 ----------VNCLKGDGLKAIK--PMLLSLLKEKHDRLRAKGMVNITTRVMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + + + K G + GVT+ S+ I I +LDTPG+ PR ++ E
Sbjct: 133 KSTFINKMARNSIAK-----TGDRPGVTK---SKQWIKTSIGIELLDTPGVLWPRFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYIL------FYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ LA ++D ++ +I Y L FY T N + + + +DE S+D + L
Sbjct: 185 TALNLAFTGAIKDEIM-DIEELSYKLVERLQSFY---TANLK--ERYKIDEVSEDPLETL 238
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A K+ +++ N +A I ++ FR G G + L+R
Sbjct: 239 NAIARKRGTLVSGGEINYN---------RIAVILLDEFRAGRIGKISLER 279
>gi|313246496|emb|CBY35398.1| unnamed protein product [Oikopleura dioica]
Length = 600
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 146/348 (41%), Gaps = 78/348 (22%)
Query: 2 GRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLIN-SKHE 60
GR +I ++ V+ VIEV D+R+P + RN + Q P +++ NK DL + S E
Sbjct: 40 GRNAANISSQVQKVNCVIEVVDARLPLSSRN--CNFAAQGRAPRLVLFNKADLASISPAE 97
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + N ++P+ +LP L +TR R+E ++
Sbjct: 98 KKYFTNLELESAEAVVWGSANEKHPS------LLPELIEQVVKITRRWRSERGTIECLIS 151
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PN GKS++IN LR +H++K
Sbjct: 152 GIPNTGKSTLINNLRRTHIEKN-------------------------------------- 173
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI----SLPRI 236
IN ++G + G +TR + ++ + E P I++ DTPG+ + RI
Sbjct: 174 ----IN-------QRGVCL-TGDAPAITRKLSERILVHESPRIFVRDTPGVYSFEDVARI 221
Query: 237 DNLECGMRLAACATLQDHLV--GEINIADYILFYLNRTGNY-RYVDFFNLDEPSDDIVML 293
+ LAA L+ G I +ADYI + LN+ + Y F +L PSD+I L
Sbjct: 222 KQVA----LAAGNLFPIDLIPDGYIQVADYIQYILNQRECWDDYTKFASLSLPSDNINTL 277
Query: 294 LAKAAIKKKWF-------KRAFDVSSNSVRMFPDTGEVARIFIEHFRK 334
L K + + R D + VR+ T + A +F++ F++
Sbjct: 278 LTAICEKYQLYHDPVELLNRHMDSENRQVRVMRKT-KAAELFVKEFQE 324
>gi|304384965|ref|ZP_07367311.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|418069181|ref|ZP_12706461.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
gi|304329159|gb|EFL96379.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|357537914|gb|EHJ21937.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
Length = 287
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 83/343 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ +E+ LK VD+V E+ D+R+P + RN +++ +++ +P +L+L K DL + +
Sbjct: 11 MAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKD-KPHLLILTKADLADPQET 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E RK H + N + P+ +KI+
Sbjct: 70 QRWLEYFRKNGDH---AVALNSKEPST---EKII-------------------------- 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+K +A+ ++D + + + T + M +G+PN
Sbjct: 98 ------------------LKHTRAI--------LADKLENWESRGIKKTEIKSMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N H+ K G + GVT+ Q + + +Y+LDTPGI P+ ++
Sbjct: 132 VGKSTLLN-----HLVNKKVAITGDRPGVTKK---QQWLKSRQGLYLLDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLN---RTG---NYRYVDFFNLDEPSDDIVM 292
G +LA ++D+L ++A + L + R G Y D + D+P ++++
Sbjct: 184 QSVGSKLAFTGAIKDNLYANDDVALFGLQIFSEKYRNGLMERYHLTD-EDFDQPLPELLL 242
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHF 332
L+ +K + +D +S + + G++ R F+E
Sbjct: 243 LIT----QKLGMRDDYDRASQRILLDARKGKLGRFNLDFVEEL 281
>gi|418033249|ref|ZP_12671726.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351469397|gb|EHA29573.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 282
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFEKQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|443632726|ref|ZP_21116905.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347549|gb|ELS61607.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 282
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D ++
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKADKADAAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E KE + + + N +G+ +I+P + I
Sbjct: 69 QQWKEHFEKEG-----IRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ +
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFQDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|427439148|ref|ZP_18923890.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
gi|425788526|dbj|GAC44678.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus lolii
NGRI 0510Q]
Length = 277
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 151/341 (44%), Gaps = 79/341 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ +E+ LK VD+V E+ D+R+P + RN +++ +++ +P +L+L K DL + +
Sbjct: 1 MAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKD-KPHLLILTKADLADPQET 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E RK H + N + P+ + + L+H TR ++V
Sbjct: 60 QRWLEYFRKNGDH---AVALNSKEPSTEKI-----ILKH-----TR---------AILVD 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ N I +TE+ + M +G+PNVG
Sbjct: 98 KLENWESRGI-------------------------------KKTEIKS---MCIGIPNVG 123
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ K G + GVT+ Q + + +Y+LDTPGI P+ ++
Sbjct: 124 KSTLLN-----HLVNKKVAITGDRPGVTKK---QQWLKSRQGLYLLDTPGILWPKFEDQS 175
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLN---RTG---NYRYVDFFNLDEPSDDIVMLL 294
G +LA ++D+L ++A + L + R G Y D + D+P ++++L+
Sbjct: 176 VGSKLAFTGAIKDNLYANDDVALFGLQIFSDKYRNGLMERYHLTD-EDFDQPLPELLLLI 234
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHF 332
+K + +D +S + + G++ R F+E
Sbjct: 235 T----QKLGMRDDYDRASQRILLDARKGKLGRFNLDFVEEL 271
>gi|366987921|ref|XP_003673727.1| hypothetical protein NCAS_0A07880 [Naumovozyma castellii CBS 4309]
gi|342299590|emb|CCC67346.1| hypothetical protein NCAS_0A07880 [Naumovozyma castellii CBS 4309]
Length = 380
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 147/316 (46%), Gaps = 71/316 (22%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ--SVQNIRPMVLVLNKRDLINSKHE 60
+ LK EK +++++E+ D R P + RN L + + ++ P ++V K+DLI + +
Sbjct: 50 KALKKFEKLAPQLNMLLELRDVRAPLSTRNILFDKVMAPESRLPRLIVYTKKDLIINNNA 109
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVM 118
L ++++ I E + +C+N V+ ++ ++ S + + + + ++
Sbjct: 110 YL--KRLKTWHEEIGEKFLLMDCKN--SVDVKNLMKVIEWESYSAIKSNNIPLPMGYRIL 165
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
V G+PNVGKS+++N+L+S
Sbjct: 166 VAGMPNVGKSTLVNSLKSL----------------------------------------- 184
Query: 179 VGKSSIINALRSSHMKKGKAVPV---GPKAGVTRSVMSQVKISEKPL----IYILDTPGI 231
A ++ + GKA V G +AGVTRS ++IS + IY++D+PGI
Sbjct: 185 --------ARKNDYTLSGKAKKVARTGGQAGVTRSTSECIRISPRSAQSQGIYLIDSPGI 236
Query: 232 SLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN----RTGNYRYVDFFNLDEP 286
P R+ N+ + L+ C ++ L+ I ADY+L+ +N + G+Y Y +++ P
Sbjct: 237 GTPGRVANVNRMLSLSLCGCVKSDLIDPIIQADYLLYLMNLQDAKKGDYFYPG--DVESP 294
Query: 287 SDDIVMLLAKAAIKKK 302
S+DI +L + K+K
Sbjct: 295 SNDIYEVLKRVKNKRK 310
>gi|187934506|ref|YP_001885449.1| ribosomal biogenesis GTPase [Clostridium botulinum B str. Eklund
17B]
gi|187722659|gb|ACD23880.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
Length = 285
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N + +Q +P +++LNK DL
Sbjct: 10 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQG-KPRIILLNKSDLT----- 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E KV KE ++H++ + +
Sbjct: 64 ---EGKVTKEW-------------------------IKHLTKDDVKVLE----------- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+N L+ +K K P+L +L + R T VMVVG+PNVG
Sbjct: 85 ----------VNCLKGDGLKAIK--PMLLSLLKEKHDRLRAKGMVNITTRVMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + + + K G K GVT+ S+ I I +LDTPG+ PR ++ E
Sbjct: 133 KSTFINKMARNSIAK-----TGDKPGVTK---SKQWIKTSIGIELLDTPGVLWPRFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+ LA ++D ++ ++ ++ L + + +DE S+D + L AI
Sbjct: 185 TALNLAFTGAIKDEIMDIEELSYKLVERLQSFYKDNLKERYKIDEVSEDPLETL--NAIA 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR VS + + +A I ++ FR G G + L+R
Sbjct: 243 K---KRGTLVSGGEI----NYNRIAVILLDEFRAGRIGKISLER 279
>gi|343127944|ref|YP_004777875.1| hypothetical protein BbiDN127_0654 [Borrelia bissettii DN127]
gi|342222632|gb|AEL18810.1| conserved hypothetical protein [Borrelia bissettii DN127]
Length = 268
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 156/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 1 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKIIKN-QAKIILLHKSDI------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ISE+I +Y
Sbjct: 54 -----------AQISEII------------------------KWKKYFE----------- 67
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 68 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 119 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 170
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 171 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 228
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 229 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 265
>gi|417837634|ref|ZP_12483872.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
gi|338761177|gb|EGP12446.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
Length = 279
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +DI+IEV D+R+P + RN ++ Q + +P ++VLNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDILIEVLDARLPVSSRNPMIGQLTKK-KPHIIVLNKADLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I+ K TRY++ E N + +
Sbjct: 67 --IQTK------------------------------------KWTRYYQDE-GNFVISMD 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N +S+ ++ + +K + + S+ M R V + G+PN G
Sbjct: 88 AQHNTNMTSLFKIIKLAGKEKTDKL----IAKGASNPMIR----------VAIAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN + + A VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 134 KSTIINRMVGRN-----AAIVGDKPGVTRG---QSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--YVDFFNLDEPSDDIV----MLL 294
G +LAAC ++ + ++A +++ +L + NYR V F + D + +LL
Sbjct: 186 VGYKLAACGAIKADIFHPDDVALFVIEFLKQ--NYRDDLVKFARISSEEMDSMSNPDLLL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +N M D + + ++ RKG G + D
Sbjct: 244 A---------------MTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|452914121|ref|ZP_21962748.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
gi|452116541|gb|EME06936.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
Length = 282
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLKEHYPERLKERYGLDEIPEDIAELF 238
>gi|376261100|ref|YP_005147820.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
gi|373945094|gb|AEY66015.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
Length = 292
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 79/348 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I ++LK VD++IE+ D+R+PF+ RN + + N +P ++ NK DL + +
Sbjct: 10 MAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLINN-KPRLVAFNKSDLADDR-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
+ + ++ + I N + N KG+ +I + + S+ + R T V
Sbjct: 67 -ISRQWIKWYADQGIDCILIN--SINGKGLNEIKARARELMSEKIERNKAKGKLFTPVRT 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
MVVG+PNVGKSS IN +
Sbjct: 124 MVVGIPNVGKSSFINKI------------------------------------------- 140
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGK++ + G + GVTR ++I+ + + +LDTPGI P+ +
Sbjct: 141 -VGKATAV---------------TGDRPGVTRG-KQWIRINSE--MELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAK 296
+ E GM LA ++D ++ +A +L L++T N F LD E D+ L
Sbjct: 182 DQEVGMNLAFTGAIKDDIMDTGEVAMELLHRLSKTYNTELCTRFKLDPEAIKDMEPLELL 241
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + KR VS + D ++ I ++ FR G G + L++
Sbjct: 242 ETVGR---KRGCIVSKGQI----DYSRISAIVLDEFRGGKIGRITLEK 282
>gi|16078668|ref|NP_389487.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309480|ref|ZP_03591327.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313805|ref|ZP_03595610.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318729|ref|ZP_03600023.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323000|ref|ZP_03604294.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|350265918|ref|YP_004877225.1| hypothetical protein GYO_1956 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386758328|ref|YP_006231544.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402775850|ref|YP_006629794.1| ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|430758972|ref|YP_007209693.1| hypothetical protein A7A1_3480 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81555913|sp|O31743.1|RBGA_BACSU RecName: Full=Ribosome biogenesis GTPase A
gi|33358156|pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
gi|2633977|emb|CAB13478.1| ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|349598805|gb|AEP86593.1| YlqF [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|384931610|gb|AFI28288.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402481032|gb|AFQ57541.1| Ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|407959011|dbj|BAM52251.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|407964588|dbj|BAM57827.1| ribosomal biogenesis GTPase [Bacillus subtilis BEST7003]
gi|430023492|gb|AGA24098.1| Hypothetical protein YlqF [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 282
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|379795610|ref|YP_005325608.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872600|emb|CCE58939.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 294
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK+D+ N
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNKKDMSN---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++E + EQ I KG Y+ V
Sbjct: 65 --LKEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A + T + ++ + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAMKATAEKFEREKSKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDIERLKAHYKIEVPEDAEILAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|386859876|ref|YP_006272582.1| GTP-binding protein [Borrelia crocidurae str. Achema]
gi|384934757|gb|AFI31430.1| Conserved hypothetical GTP-binding protein [Borrelia crocidurae
str. Achema]
Length = 283
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 157/345 (45%), Gaps = 83/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L+ I+ ++K +IV+E+ D+R PF+ +N L++ ++N + +++LNK DL+
Sbjct: 12 MKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLV---Q 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK-ILPTLQHISDNMTRYHRTEVYNTTVM 118
E I + + ++ + V+ TN KG++K I+ ++ I++ T+ +T V+
Sbjct: 69 EGEILKWKKYFETLGNNVLITNIYK---KGIKKQIINNIRKIAN--TKKIKTYKEKIKVL 123
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
V+GVPNVGKSSIIN L
Sbjct: 124 VIGVPNVGKSSIINLL-------------------------------------------- 139
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGK S V K G T+++ +K++E I I D PGI ++N
Sbjct: 140 VGKKS---------------TSVANKPGHTKNI-QILKVNED--INIFDMPGILWHNLEN 181
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E +LA +++ ++ +A Y+L ++ + + +N+ S D + +L + A
Sbjct: 182 QEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNI--ISTDALKILEEFA 239
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + + + D ++I I+ +R+G FG ++LD
Sbjct: 240 TIRGFINKKYGM---------DIESASKILIKEYREGKFGKIILD 275
>gi|270290221|ref|ZP_06196446.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
gi|270281002|gb|EFA26835.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
Length = 287
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 151/340 (44%), Gaps = 77/340 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ +E+ LK VD+V E+ D+R+P + RN +++ +++ +P +L+L K DL + +
Sbjct: 11 MAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKD-KPHLLILTKADLADPQET 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E RK H + N + P+ + + L+H
Sbjct: 70 QRWLEYFRKNGDH---AVALNSKEPSTEKI-----ILKHT-------------------- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + N L + + K +TE+ + M +G+PNVG
Sbjct: 102 ------RAILANKLENWESRGIK-------------------KTEIKS---MCIGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ K G + GVT+ Q + + +Y+LDTPGI P+ ++
Sbjct: 134 KSTLLN-----HLVNKKVAITGDRPGVTKK---QQWLKSRQGLYLLDTPGILWPKFEDQS 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-----DEPSDDIVMLLA 295
G +LA ++D+L ++A + L + ++ ++L D+P ++++L+
Sbjct: 186 VGSKLAFTGAIKDNLYANDDVALFGLQIFSEKYRNGLIERYHLTDEDFDQPLPELLLLIT 245
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHF 332
+K + +D +S + + G++ R F+E
Sbjct: 246 ----QKLGMRDDYDRASQRILLDARKGKLGRFNLDFVEEL 281
>gi|401840491|gb|EJT43292.1| MTG1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 369
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 73/312 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ LK EK + ++++IE+ D R P + RN +
Sbjct: 40 KALKKFEKLIPQMNMIIELRDIRAPLSTRN----------------------------VI 71
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
+ RKE + V++T + ++P + D + ++H E+ V++
Sbjct: 72 FDRIARKEHDMVKLVVYTR---------KDLMPGNKPYIDKLKQWHE-ELGEKFVLLDCR 121
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+ +++ L + + K+ LP M+ G+PNVGKS
Sbjct: 122 SKIEVENLLKILEWQNYELEKSGGYLPM-----------------GYRAMITGMPNVGKS 164
Query: 183 SIINALRS-------SHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDT 228
++IN+LR+ HM ++ K G +AGVTRS ++++ K IY++DT
Sbjct: 165 TLINSLRAIFHERDREHMGSERKKVARTGAEAGVTRSTSEVIRVASKTTESKNEIYLIDT 224
Query: 229 PGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---RYVDFFNLD 284
PGI LP RI + + LA C ++++L+ I ADY+L+ +N Y R + N
Sbjct: 225 PGIGLPGRISDHNRMLGLALCGGVKNNLIDPIFQADYLLYLMNLQNFYNKKRELYPGNYA 284
Query: 285 EPSDDIVMLLAK 296
P++DI +L +
Sbjct: 285 SPTNDIYEVLRR 296
>gi|296330820|ref|ZP_06873295.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674338|ref|YP_003866010.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|338819266|sp|E0TTS5.1|RBGA_BACPZ RecName: Full=Ribosome biogenesis GTPase A
gi|296151825|gb|EFG92699.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412582|gb|ADM37701.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 282
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYALDEIPEDIAELF 238
>gi|367021522|ref|XP_003660046.1| hypothetical protein MYCTH_2297831 [Myceliophthora thermophila ATCC
42464]
gi|347007313|gb|AEO54801.1| hypothetical protein MYCTH_2297831 [Myceliophthora thermophila ATCC
42464]
Length = 412
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 147/372 (39%), Gaps = 92/372 (24%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH 59
GL + + L + ++IE D R+P T N LL+QS+ + R ++V RDL H
Sbjct: 51 GLARMRQTLSTIGLIIECRDFRVPITSWNPLLEQSLAASSASERARIIVYTHRDLGPDDH 110
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ V T R H+ D +H + V+
Sbjct: 111 PPV-------------SVSSTAAR---------------HLRD----FHLRHNHAVEVLF 138
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G KS AL S+ + + R + +VVG+PN
Sbjct: 139 TGTGPSYKSPT-GALLSAVKRVAR------------------ERDSLTGLRALVVGMPNA 179
Query: 180 GKSSIINALR--------SSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEKP-------- 221
GKS+++NALR ++ K G GVTR + S V+I E P
Sbjct: 180 GKSTLLNALRRRSGIGRPAAAAAAPKVARTGANPGVTRKLSSPVRIVPPETPDDPSLRGV 239
Query: 222 --LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN--------R 271
++++DTPG+ +P + + E ++LA ++D ++ +ADY+L+ LN
Sbjct: 240 GEGVFVVDTPGVFIPYVSDPEKMLKLALVGCVRDGILPRETLADYLLYRLNLDYGTGTGA 299
Query: 272 TGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEH 331
G YV +D P++D+ L A+ ++ K A +N A ++
Sbjct: 300 GGEPAYVARLGMDGPTNDVTEFL--EAVARRLGKLAKGGRAN-------YDAAAEWAVQE 350
Query: 332 FRKGSFGSVMLD 343
+R G G +LD
Sbjct: 351 WRSGGLGKALLD 362
>gi|145527192|ref|XP_001449396.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416984|emb|CAK81999.1| unnamed protein product [Paramecium tetraurelia]
Length = 286
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 150/353 (42%), Gaps = 96/353 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH 59
M R ++ +EK + +V + +E+ D+R+PF+ +N+ +Q + + +++ NK DL N
Sbjct: 14 MKRAMEHLEKRITDVQLFLELRDARVPFSSKNYHFDNLMQAHNKEKIIIFNKFDLCNQDI 73
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD-----NMTRYHRTEVYN 114
+ I EK +K G+Q I + + + MT +++ +
Sbjct: 74 TNKIIEKYKKV------------------GIQCIATSARERLNLRELIMMTNTYKSAKFA 115
Query: 115 TT---VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV 171
T +M+ G+PNVGKS+IIN LR +
Sbjct: 116 TVGMWLMICGMPNVGKSTIINQLRQT---------------------------------- 141
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
+ + K KA+ + T ++ +KI ++PL Y++DTPG+
Sbjct: 142 ------------------TPKLNKRKALAKSTASPCTTKNVAGIKICDEPLAYLVDTPGV 183
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDI 290
+P I E G++L ++D +V + + DY++ +N+ +Y + L++ P
Sbjct: 184 MIPNITEEEQGLKLGLVGCIKDKIVTKERMLDYLVREMNQQQMEKYYKIYGLNQRPKTGG 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+L A+++++ ++ + + + + FR G G++ LD
Sbjct: 244 EYML---AVRERYNHYNYETTIDFI-------------LNGFRIGKLGNITLD 280
>gi|46907499|ref|YP_013888.1| ribosomal biogenesis GTPase [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093920|ref|ZP_00231659.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|226223875|ref|YP_002757982.1| hypothetical protein Lm4b_01282 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824667|ref|ZP_05229668.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|254852674|ref|ZP_05242022.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|254932411|ref|ZP_05265770.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|255520254|ref|ZP_05387491.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-175]
gi|300765308|ref|ZP_07075292.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|386732012|ref|YP_006205508.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404280827|ref|YP_006681725.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404286688|ref|YP_006693274.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749616|ref|YP_006673082.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|405752491|ref|YP_006675956.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|405755402|ref|YP_006678866.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|406704045|ref|YP_006754399.1| GTPase family protein [Listeria monocytogenes L312]
gi|417313732|ref|ZP_12100439.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|417317426|ref|ZP_12104044.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|424714147|ref|YP_007014862.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823037|ref|ZP_18248050.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|46880767|gb|AAT04065.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017706|gb|EAL08500.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|225876337|emb|CAS05046.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605992|gb|EEW18600.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|293583968|gb|EFF96000.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|293593906|gb|EFG01667.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|300513991|gb|EFK41054.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|328468562|gb|EGF39562.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|328475116|gb|EGF45900.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|332311717|gb|EGJ24812.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|384390770|gb|AFH79840.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404218816|emb|CBY70180.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|404221691|emb|CBY73054.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|404224602|emb|CBY75964.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|404227462|emb|CBY48867.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404245617|emb|CBY03842.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361075|emb|CBY67348.1| GTPase family protein [Listeria monocytogenes L312]
gi|424013331|emb|CCO63871.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 287
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L + R ++ ++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLKVETVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|408671252|ref|YP_006871323.1| ribosomal biogenesis GTPase [Borrelia garinii NMJW1]
gi|407241074|gb|AFT83957.1| ribosomal biogenesis GTPase [Borrelia garinii NMJW1]
Length = 268
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 1 MKRALDLIKNNLQKTNIVLEILDARAPFSSKNPLTEKIIKN-QAKIILLHKSDI------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 54 -----------AQIAEII------------------------KWKKYFE----------- 67
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 68 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 119 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQS 170
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 171 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 228
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 229 ------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 265
>gi|15924233|ref|NP_371767.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926826|ref|NP_374359.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
N315]
gi|148267734|ref|YP_001246677.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH9]
gi|150393792|ref|YP_001316467.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH1]
gi|156979564|ref|YP_001441823.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315601|ref|ZP_04838814.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006030|ref|ZP_05144631.2| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795701|ref|ZP_05644680.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|258415925|ref|ZP_05682195.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|258421687|ref|ZP_05684611.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|258434843|ref|ZP_05688917.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|258444581|ref|ZP_05692910.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|258447586|ref|ZP_05695730.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|258449428|ref|ZP_05697531.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|258454807|ref|ZP_05702771.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282892731|ref|ZP_06300966.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|282927585|ref|ZP_06335201.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|295406178|ref|ZP_06815985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297244406|ref|ZP_06928289.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|384864470|ref|YP_005749829.1| hypothetical protein ECTR2_1099 [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150386|ref|YP_005741950.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|415691093|ref|ZP_11453332.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650895|ref|ZP_12300658.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|417802680|ref|ZP_12449737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|417892142|ref|ZP_12536196.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|418424383|ref|ZP_12997505.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427378|ref|ZP_13000390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430219|ref|ZP_13003135.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433184|ref|ZP_13005961.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436855|ref|ZP_13008657.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439727|ref|ZP_13011434.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442779|ref|ZP_13014381.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445838|ref|ZP_13017314.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448782|ref|ZP_13020174.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451606|ref|ZP_13022940.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454662|ref|ZP_13025924.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457538|ref|ZP_13028741.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418638136|ref|ZP_13200439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654623|ref|ZP_13216519.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|418661562|ref|ZP_13223147.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878092|ref|ZP_13432327.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880920|ref|ZP_13435139.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883849|ref|ZP_13438044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418894942|ref|ZP_13449037.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914341|ref|ZP_13468313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920320|ref|ZP_13474253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931313|ref|ZP_13485154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418991105|ref|ZP_13538766.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419785002|ref|ZP_14310760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768073|ref|ZP_18195366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|443636965|ref|ZP_21121058.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
gi|13701043|dbj|BAB42338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247013|dbj|BAB57405.1| similar to GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|147740803|gb|ABQ49101.1| Ras superfamily GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus JH9]
gi|149946244|gb|ABR52180.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
aureus JH1]
gi|156721699|dbj|BAF78116.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789673|gb|EEV28013.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|257839261|gb|EEV63735.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|257842373|gb|EEV66798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|257849204|gb|EEV73186.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|257850074|gb|EEV74027.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|257853777|gb|EEV76736.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|257857416|gb|EEV80314.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|257863190|gb|EEV85954.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282590588|gb|EFB95665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|282764728|gb|EFC04853.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|285816925|gb|ADC37412.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|294968766|gb|EFG44788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297178436|gb|EFH37682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|312829637|emb|CBX34479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131037|gb|EFT87021.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727079|gb|EGG63535.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|334274316|gb|EGL92638.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|341858109|gb|EGS98910.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|375014448|gb|EHS08129.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023360|gb|EHS16823.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038744|gb|EHS31705.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694214|gb|EHT18579.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694748|gb|EHT19112.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714595|gb|EHT38794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714936|gb|EHT39134.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723227|gb|EHT47352.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377731813|gb|EHT55866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757843|gb|EHT81731.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765679|gb|EHT89528.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383363603|gb|EID40935.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718614|gb|EIK06572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718965|gb|EIK06921.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720290|gb|EIK08202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725624|gb|EIK13228.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727959|gb|EIK15459.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730689|gb|EIK18050.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735766|gb|EIK22876.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737444|gb|EIK24510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|387737998|gb|EIK25052.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744487|gb|EIK31251.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745777|gb|EIK32527.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747270|gb|EIK33979.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348710|gb|EJU83689.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|408423435|emb|CCJ10846.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408425425|emb|CCJ12812.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408427413|emb|CCJ14776.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408429400|emb|CCJ26565.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408431388|emb|CCJ18703.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408433382|emb|CCJ20667.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408435373|emb|CCJ22633.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408437358|emb|CCJ24601.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443406942|gb|ELS65512.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
Length = 294
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ +K+S + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ-QQWIKVSN--ALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|398310701|ref|ZP_10514175.1| GTPase YlqF [Bacillus mojavensis RO-H-1]
Length = 282
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKDI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>gi|392426853|ref|YP_006467847.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
acidiphilus SJ4]
gi|391356816|gb|AFM42515.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
acidiphilus SJ4]
Length = 276
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + LK VD+VIE+ D+R+P + RN LL + + + +L+LNK DL +
Sbjct: 10 MAKARRLLTDQLKWVDVVIELADARIPASSRNPLLHE-MLGKKQKLLLLNKADLADPAWT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EK+R + + T GV++I+P L+
Sbjct: 69 QKWLEKLRTKSPAYALSAATG------NGVKQIVPALE---------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S++ + ++ +KG + P L VM+VG+PN+G
Sbjct: 101 --------SLVRSKQAKLAEKG----VRPQL-----------------IKVMIVGIPNIG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L K VG K GVTR V+I ++ + +LDTPG+ P+ ++ E
Sbjct: 132 KSSLINQLTGGSQAK-----VGNKPGVTRG-NQWVRIHDR--VELLDTPGMLWPKFEDQE 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAA ++D + ++ +I+ +L + + + ++ + EP DI + I
Sbjct: 184 IGRKLAALGAIKDEVFDVEELSIWIMDWL-KANSPQSLNRYQ--EPVPDINL----ETIG 236
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
+ KR + V DT + A+IF+ R G G + +D +F
Sbjct: 237 R---KRGCLIRGGQV----DTLKSAQIFLRELRTGQLGPITMDINF 275
>gi|452991215|emb|CCQ97470.1| Ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 282
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 86/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+K+L VDIV EV D+R+PF+ +N + + + +++LNK DL +
Sbjct: 10 MKKTKESIKKNLSLVDIVYEVIDARIPFSSQNPEID-GILGRKSRIIILNKSDLADM--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +K Q + + KG+ + I D + EV + +
Sbjct: 66 ----ESNKKWQDYFGK-----------KGISSV------IVDCINNRGLEEVIKLSYRLT 104
Query: 121 GVPNVGKSSIINALRSSHM-KKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
G R H+ KKG K PI VM+VGVPN
Sbjct: 105 GE------------RRRHLAKKGIKNRPI----------------------RVMIVGVPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN+L K K VG K GVTR V +++ K + +LDTPGI P+ ++
Sbjct: 131 VGKSTLINSL-----SKRKGTKVGNKPGVTR-VNQWIRL--KGDLELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY----RYVDFFNLDEPSDDIVMLL 294
E G+ LA ++D L+ N+A ++ LN RY D ++ DI++ +
Sbjct: 183 KEVGLNLAFTGAIKDELLDIENLAIKLVERLNAMSKAFIEERY-DILVENKAPHDIILEI 241
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K KR V + D + + I ++ FRKG G + L+
Sbjct: 242 GK--------KRGCIVKGGEI----DFSKASNIILDEFRKGIIGRITLE 278
>gi|422418869|ref|ZP_16495824.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|422421929|ref|ZP_16498882.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
gi|313633473|gb|EFS00297.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|313638163|gb|EFS03419.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
Length = 287
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L + R ++ +++ S++ + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLENWLKVEKVSENPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ + R D PD A + R+ G + D
Sbjct: 244 KRGFLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|289434556|ref|YP_003464428.1| HSR1-related GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170800|emb|CBH27342.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 287
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L + R ++ +++ S++ + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLENWLKVEKVSENPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ + R D PD A + R+ G + D
Sbjct: 244 KRGFLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|51573469|gb|AAU07494.1| conserved hypothetical GTP-binding protein [Borrelia garinii PBi]
Length = 268
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 1 MKRALDLIKNNLEKTNIVLEILDARAPFSSKNPLTEKIIKN-QTKIILLHKSDI------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 54 -----------AQIAEII------------------------KWKKYFE----------- 67
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 68 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 119 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQS 170
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 171 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 228
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 229 ------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 265
>gi|217964585|ref|YP_002350263.1| ribosomal biogenesis GTPase [Listeria monocytogenes HCC23]
gi|290894531|ref|ZP_06557481.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|386008041|ref|YP_005926319.1| GTPase family protein [Listeria monocytogenes L99]
gi|386026640|ref|YP_005947416.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404407706|ref|YP_006690421.1| GTPase family protein [Listeria monocytogenes SLCC2376]
gi|217333855|gb|ACK39649.1| GTPase family protein [Listeria monocytogenes HCC23]
gi|290555912|gb|EFD89476.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|307570851|emb|CAR84030.1| GTPase family protein [Listeria monocytogenes L99]
gi|336023221|gb|AEH92358.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404241855|emb|CBY63255.1| GTPase family protein [Listeria monocytogenes SLCC2376]
Length = 287
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ +IA Y L +L R ++ ++ S+D V LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEDIAGYGLRFLENHYPDRLQNWLKVETVSEDPVETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|120555289|ref|YP_959640.1| ribosomal biogenesis GTPase [Marinobacter aquaeolei VT8]
gi|120325138|gb|ABM19453.1| Ras superfamily GTP-binding protein YlqF [Marinobacter aquaeolei
VT8]
Length = 307
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 106/213 (49%), Gaps = 21/213 (9%)
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
+ A+ +H ++ +A+ IL +++ MT H + VM++G+PNVGKS++IN L
Sbjct: 81 VRAVTLTHNQRQEALGIL----KLAEEMTPGHDRQKSALRVMILGIPNVGKSTLINTLAG 136
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
K G + VTR+ + +K+ + L+Y DTPG P++ ++CG RLA
Sbjct: 137 RPAAK-----TGNEPAVTRAQQA-IKLPDNVLLY--DTPGFLWPKLSPVQCGYRLAVTGA 188
Query: 251 LQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDV 310
++ ++ ++A + YL V+ + LDE D + L+ A+K+++ R
Sbjct: 189 IRSAVLDFEDVALFEADYLIAHYPELVVNRYGLDETPVDGLALMDAIAVKRRFLGRGG-- 246
Query: 311 SSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD +V+ + + R G+ G + L+
Sbjct: 247 -------VPDLHKVSEVLLNELRAGTLGRISLE 272
>gi|365924909|ref|ZP_09447672.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266411|ref|ZP_14768882.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425487|gb|EJE98450.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 286
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 94/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ +++++K VDIV+E+ D+R+P + RN L Q +QN +P +LVL K+DL +S+
Sbjct: 11 MAKALRQVKENIKQVDIVLELVDARLPESSRNPQLAQILQN-KPSILVLTKKDLADSQTT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT--TVM 118
+ VR +S I N + K +++ + Q ++D + + + + VM
Sbjct: 70 A---GWVRYYESQKQPAIAVNSTTGSLKIIEEKIK--QVLADKIALQAQKGILHKRIKVM 124
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+G+PNVGKS+++N L V V P
Sbjct: 125 CIGIPNVGKSTLLNHL-------------------------------VKKNVAQVGNRPG 153
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
V KS +K GK + +LDTPGI P+ ++
Sbjct: 154 VTKS-------QQWLKAGKD------------------------MLLLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD------DIVM 292
G +LA +++ L + +IA Y+L + + +++ L + SD D+++
Sbjct: 183 PMIGKKLALTGAIKETLYAKDDIALYLLEHFCQFAPANLKEYYKLTD-SDLSLSTVDLLL 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L+ KK FK +D +S R+ +E RKG G LD
Sbjct: 242 LIT----KKIGFKDDYDRASE------------RMILE-CRKGKLGRYTLD 275
>gi|386854045|ref|YP_006203330.1| Ribosomal biogenesis GTPase [Borrelia garinii BgVir]
gi|365194079|gb|AEW68977.1| RbgA [Borrelia garinii BgVir]
Length = 279
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKTNIVLEILDARAPFSSKNPLTEKIIKN-QAKIILLHKSDI------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQIAEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 79 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|357141159|ref|XP_003572110.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 373
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 170 TVMVVGVPNVGKSSIINAL----RSSHMKKGKA--VPVGPKAGVTRSVMSQVKISEKPLI 223
TV++VG+PNVGKS+IINA+ R +KGK V G TR + S K++ P I
Sbjct: 140 TVLLVGIPNVGKSAIINAMHQIGRIGAAEKGKLKHAIVSSHPGETRDI-SGYKVASHPNI 198
Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL 283
Y+LDTPGI + ECG RLA ++D L+ E +IA ++L LN YR D+ NL
Sbjct: 199 YVLDTPGILCRTFASDECGPRLALTGAIKDSLLEEHDIAKFLLALLNLRKEYR--DWDNL 256
Query: 284 DEPSD 288
+ D
Sbjct: 257 NRMGD 261
>gi|333985347|ref|YP_004514557.1| ribosome biogenesis GTP-binding protein YlqF [Methylomonas
methanica MC09]
gi|333809388|gb|AEG02058.1| ribosome biogenesis GTP-binding protein YlqF [Methylomonas
methanica MC09]
Length = 302
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 151/348 (43%), Gaps = 90/348 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I++ L N+D++IE+ D+R+PF+ +N +L + ++ +P + VL+K DL +
Sbjct: 11 MHKASKEIKETLPNIDLLIEILDARIPFSSQNPMLAE-LRGDKPTIRVLSKIDLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E R+ Q+H+ +GV+ + T QH
Sbjct: 67 ----ELTRQWQTHLELE----------QGVKTLAVTTQH--------------------- 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
P+ K II+ GK +P + +V T M++G+PNVG
Sbjct: 92 --PDKIKQ-IIDLC-------GKMLP------------EKSESNKVIRT--MIMGIPNVG 127
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT+ Q +I+ K I + DTPG+ P ++N
Sbjct: 128 KSTIINVLAGRTIAK-----TGNEPAVTKM---QQRINLKNNIVLSDTPGVLWPNVENRN 179
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN-----LDEPSDDIVMLLA 295
G RLA ++D +IA + L YL + Y D D P+D A
Sbjct: 180 SGYRLAVTGAIKDTAFQHDDIALFALDYLLKA----YPDLLQTRYQLADLPTD------A 229
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+A+ KR + V D + A++F+ R G+ G + L+
Sbjct: 230 TSALHAIGQKRGCLRAGRQV----DLDKAAKLFLTELRAGTLGLISLE 273
>gi|385825991|ref|YP_005862333.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|329667435|gb|AEB93383.1| hypothetical protein LJP_1058c [Lactobacillus johnsonii DPC 6026]
Length = 279
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 147/349 (42%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN ++ Q + +P ++VLNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKK-KPHIIVLNKADLADPIQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ +R Q + VI + QH + NMT + ++
Sbjct: 70 ---KKWIRYYQDDGNFVISMDA---------------QHTT-NMTSLFK---------II 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ K+ + A KG + P++ V + G+PN G
Sbjct: 102 KLAGKKKTDKLIA-------KGASNPMI---------------------RVAIAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN + + A VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 134 KSTIINRMVGRN-----AAIVGDKPGVTRG---QSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--YVDFFNLDEPSDDIV----MLL 294
G +LAAC ++ + ++A +++ +L + NYR V F + D + +LL
Sbjct: 186 VGYKLAACGAIKADIFHPDDVALFVIEFLKQ--NYRDDLVKFARISSEEMDSMSNPDLLL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +N M D + + ++ RKG G + D
Sbjct: 244 A---------------MTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|333979537|ref|YP_004517482.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823018|gb|AEG15681.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 282
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 151/346 (43%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R + ++++LK VD+VIE+ D+R+P + RN L+ + V +P ++VLNK DL +
Sbjct: 10 MARARRLVQENLKLVDVVIELLDARIPASSRNPLIGKIVGG-KPHLVVLNKEDLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H++ + R + LP L + + TR R V ++V
Sbjct: 66 ------------HLTRLWLDWFRG-------RGLPAL---AVDSTR--RKGVAEVPMLV- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ +S +G+ P N MVVG+PNVG
Sbjct: 101 -------RRLVEDKMASLAARGRRPP---------------------NPRCMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS INAL S + + G + GVTR V+++ + + +LDTPG+ P+ D+
Sbjct: 133 KSFFINALAGSRVTR-----TGNRPGVTRG-QQWVRLARE--VELLDTPGVLWPKFDDPR 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDD--IVMLLAKA 297
G++LAA +++ + +A ++ +L ++ + + L+E P+ +V L+
Sbjct: 185 VGLKLAATGAIKEEVFDVEEVAAWLAEWLLQSFPASLKERYRLEELPAQGHRVVELIGA- 243
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+R V D+ A ++ FR+G G LD
Sbjct: 244 -------RRGLVGPGGVV----DSYRAAVHLLKEFREGRLGRFTLD 278
>gi|216263714|ref|ZP_03435709.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
ACA-1]
gi|384207131|ref|YP_005592853.1| hypothetical protein BafPKo_0667 [Borrelia afzelii PKo]
gi|215980558|gb|EEC21379.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia afzelii
ACA-1]
gi|342857015|gb|AEL69863.1| conserved hypothetical protein [Borrelia afzelii PKo]
Length = 279
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLEKTNIVLEILDARAPFSSKNPLTEKIIKN-QTKIILLHKSDI------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQIAEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 79 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNI-QIVKINEE--INLFDMPGILWHNLVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + D + A+I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIHKKNEL----DIEKAAKILIKEFREGKFGKIILDKNY 276
>gi|421872826|ref|ZP_16304443.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus
laterosporus GI-9]
gi|372458241|emb|CCF13992.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus
laterosporus GI-9]
Length = 273
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 141/332 (42%), Gaps = 82/332 (24%)
Query: 17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISE 76
+VIE+ D+R+P + RN ++ + V +P +++LNK DL +
Sbjct: 1 MVIELLDARLPLSSRNPMIDEIVAE-KPRLILLNKADLADP------------------- 40
Query: 77 VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 136
+++ RY + + T +P I+AL
Sbjct: 41 ----------------------SVTEMWVRYFKEQGLRT------LP-------IDAL-- 63
Query: 137 SHMKKGKAVPILPTL-QHISDNM--TRYHRTEVYNTT-VMVVGVPNVGKSSIINALRSSH 192
G+ V LP L Q ++ +M R R + +M++G+PNVGKSS+IN
Sbjct: 64 ----SGRGVNKLPELCQELASDMLQKRADRGMLARAVRIMILGIPNVGKSSLIN-----R 114
Query: 193 MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQ 252
+ K G + VT+S VK+ + + +LDTPGI P+ ++ G+RLAA ++
Sbjct: 115 LAKRSVAQTGDRPAVTKS-QQWVKMGDT--LELLDTPGILWPKFEDQMVGLRLAASGAIK 171
Query: 253 DHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSS 312
D L+ +A Y + Y+ R D F L + +D V LL I K KR S
Sbjct: 172 DELIDFSEVALYAVRYMMHYYPERLKDRFKLTDLPEDGVELL--EMIGK---KRGCMASG 226
Query: 313 NSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ D + + + + R G G + L+R
Sbjct: 227 GYI----DYDKASELLLRELRSGKIGQISLER 254
>gi|111115476|ref|YP_710094.1| ribosomal biogenesis GTPase [Borrelia afzelii PKo]
gi|110890750|gb|ABH01918.1| hypothetical protein BAPKO_0687 [Borrelia afzelii PKo]
Length = 268
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 1 MKRALDLIKNNLEKTNIVLEILDARAPFSSKNPLTEKIIKN-QTKIILLHKSDI------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 54 -----------AQIAEII------------------------KWKKYFE----------- 67
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 68 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 119 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 170
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 171 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 228
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + D + A+I I+ FR+G FG ++LD+++
Sbjct: 229 ------RKLIHKKNEL----DIEKAAKILIKEFREGKFGKIILDKNY 265
>gi|420156939|ref|ZP_14663779.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
gi|394756949|gb|EJF40008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
Length = 289
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 147/352 (41%), Gaps = 87/352 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R + IEK LK VDI E+ D+R+P + RN +L +QN +P V+++NK DL +S
Sbjct: 14 MTRTKRQIEKSLKLVDIAAEMIDARVPVSSRNPVLDSLIQN-KPRVILMNKSDLADSAQ- 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +R QS + + R+ K ++ P ++ +
Sbjct: 72 --TERWIRFYQSQGISAVALDSRS--GKNLKAFFPLVRDVL------------------- 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S I A R+ M G+ V VMVVGVPNVG
Sbjct: 109 -------SDRIAAWRAKGMV-GRPV------------------------RVMVVGVPNVG 136
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN L SH G V + GVTR + + +LDTPG+ P+ ++
Sbjct: 137 KSSFINKL--SH---GGKANVEDRPGVTR---NNQWFTLGGGFELLDTPGVLWPKFEDPL 188
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTG----NYRY----VDFFNLDEPSDDIVM 292
G RLA ++D +V ++A +L L + RY VDF + +++
Sbjct: 189 VGERLAFTGAVKDDVVDTEHLAARLLEVLCVSYPAPLKERYKLQDVDFTGMK--GHEVLA 246
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+AK KR +S V DT A ++ FR G V L++
Sbjct: 247 LIAK--------KRGMLISGGEV----DTERAAITVLDEFRGAKLGRVTLEQ 286
>gi|387813286|ref|YP_005428768.1| hypothetical protein MARHY0863 [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338298|emb|CCG94345.1| conserved hypothetical protein, putative GTPase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 307
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 106/213 (49%), Gaps = 21/213 (9%)
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
+ A+ +H ++ +A+ IL +++ MT H + VM++G+PNVGKS++IN L
Sbjct: 81 VRAVTLTHNQRQEALGIL----KLAEEMTPGHDRQKSALRVMILGIPNVGKSTLINTLAG 136
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
K G + VTR+ + +K+ + L+Y DTPG P++ ++CG RLA
Sbjct: 137 RPAAK-----TGNEPAVTRAQQA-IKLPDNVLLY--DTPGFLWPKLSPVQCGYRLAITGA 188
Query: 251 LQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDV 310
++ ++ ++A + YL V+ + LDE D + L+ A+K+++ R
Sbjct: 189 IRSAVLDFEDVALFEADYLIAHYPELVVNRYGLDETPVDGLALMDAIAVKRRFLGRGG-- 246
Query: 311 SSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD +V+ + + R G+ G + L+
Sbjct: 247 -------VPDLHKVSEVLLNELRAGTLGRISLE 272
>gi|256762585|ref|ZP_05503165.1| GTP-binding protein, partial [Enterococcus faecalis T3]
gi|256683836|gb|EEU23531.1| GTP-binding protein [Enterococcus faecalis T3]
Length = 278
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 137/320 (42%), Gaps = 74/320 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 25 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +K+ + + N + KG+ KI+P
Sbjct: 84 KKWQHYFQKKGY---QTLVINAQQ--NKGINKIVPA------------------------ 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K ++ L K K I M +G+PNVG
Sbjct: 115 -----AKEALKEKLAREQAKGLKPRAI----------------------RAMCIGIPNVG 147
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K G K GVT+ Q + + +LDTPGI P+ ++ E
Sbjct: 148 KSTLMNRLVGK-----KIAQTGNKPGVTKG---QQWLRSGSQLELLDTPGILWPKFEDEE 199
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVMLLA 295
G +LA ++D L+ ++A Y L + R R + + L E P+ + +ML++
Sbjct: 200 IGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQLMLIS 259
Query: 296 KAAIKKKWFKRAFDVSSNSV 315
+K+ F+ ++ +S +
Sbjct: 260 ----QKRGFRDDYNRASEMI 275
>gi|161898745|ref|YP_073086.2| ribosomal biogenesis GTPase [Borrelia garinii PBi]
Length = 279
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLEKTNIVLEILDARAPFSSKNPLTEKIIKN-QTKIILLHKSDI------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQIAEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPNVG
Sbjct: 79 ---NLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|410623484|ref|ZP_11334297.1| ribosome biogenesis GTPase A [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410156976|dbj|GAC29671.1| ribosome biogenesis GTPase A [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 333
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 144/343 (41%), Gaps = 80/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK+I++ L VDI+IEV D+R+P++ N + + ++ +P + +LNK DL +
Sbjct: 10 MHKALKEIKEALSQVDILIEVLDARIPYSSENPEIAK-IRGDKPCLKILNKADLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K Q+H+ ++ + T +D+ + +
Sbjct: 66 ----EMTAKWQAHLE--------------AERGVKTFTTSTDDTAKTKQ----------- 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
II +R + +K +V + M++G+PNVG
Sbjct: 97 ---------IIELIRKTCAQKDASVKTI---------------------NAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT++ Q +I+ I + DTPG+ P+++N
Sbjct: 127 KSTLINILADRVIAK-----TGNEPAVTKN---QQRINLGSGIVLFDTPGVLWPKLENPN 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA ++D + ++ Y YL + + F +D+ D + L AA K
Sbjct: 179 TGYRLAASGAVKDTAMEYDDVGFYAADYLIKAYPEMMKERFKIDQLPDTEIEFLELAAAK 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + V+ + ++ + I R G G + L+
Sbjct: 239 RGALRAGGRVNLH---------KICEVLINELRSGKLGRITLE 272
>gi|448083118|ref|XP_004195315.1| Piso0_005867 [Millerozyma farinosa CBS 7064]
gi|359376737|emb|CCE87319.1| Piso0_005867 [Millerozyma farinosa CBS 7064]
Length = 367
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 172 MVVGVPNVGKSSIINALRSS---------HMKKGKAVPVGPKAGVTRSVMSQVKISEKPL 222
M++G+PNVGKS+++N+LRS KK K G + GVTR+ +++SE+P
Sbjct: 130 MIIGMPNVGKSTLVNSLRSVGYSNQVDSISKKKRKVAQTGGQPGVTRTTSEVIRLSEEPD 189
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDF 280
I DTPG+ LP + + E + L+ + + + + ADY+L+ LN +Y ++
Sbjct: 190 ILAYDTPGVFLPTVKDNETMLALSLVGCVHNSFIDPVIQADYLLYILNLQDPSGSKYSEY 249
Query: 281 FNLDEPSDDIVMLLAKAAIKKK 302
+D P++ I LL A+K+K
Sbjct: 250 --MDHPTNSIEELLYHIALKRK 269
>gi|118443037|ref|YP_878280.1| ribosomal biogenesis GTPase [Clostridium novyi NT]
gi|118133493|gb|ABK60537.1| GTP-binding protein, putative [Clostridium novyi NT]
Length = 280
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 150/344 (43%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD+VIE+ D+R+ + N + S+ N + +++LNK DL E
Sbjct: 10 MAKTRREIKENLKFVDVVIEIRDARIVKSSANPDID-SICNNKSRIILLNKSDL---AEE 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + + K + +V+ NC KG+ I PT+ + + H
Sbjct: 66 KITRQWIEKLSNDSVKVLSVNC--VTGKGLNNIKPTINEL---LKEKH------------ 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ L+S M N+T T MVVG+PNVG
Sbjct: 109 -----------DRLKSKGMV----------------NIT---------TRAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN M K VG + GVT+ ++ I K I +LDTPG+ P+ ++
Sbjct: 133 KSSFIN-----KMAKNNTAKVGDRPGVTK---NKQWIKTKMGIELLDTPGVLWPKFEDES 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L + ++ + L+ S+D + +
Sbjct: 185 VGLDLAFTGAIKDEIMDIETLAFKLIGKLQEEYPEKLMERYKLNSLSEDTLENMDSIG-- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S ++ D V+ + ++ FR G G + L+R
Sbjct: 243 ---RKRGAVISGGNI----DYNRVSVMILDEFRGGKLGPISLER 279
>gi|333897176|ref|YP_004471050.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112441|gb|AEF17378.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 278
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 144/345 (41%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE++LK VDIV E+ D+R+P + RN L+ LV NK+ +I
Sbjct: 9 MAKTKRLIEENLKIVDIVYELLDARIPRSSRNPLIDD---------LVKNKKRIILLNKS 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +V K + N KG H+S N
Sbjct: 60 DLADLEVNKMWNDYF----------NLKG---------HVSIN----------------- 83
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPNV 179
IN+L S ++ + TL+ SD + + + + M+VG+PNV
Sbjct: 84 ----------INSLDSKCIQSIYEL----TLKECSDIIDKKRQKGIKAKLRAMIVGIPNV 129
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN+L K K G K GVT+S + + P +LDTPGI P+ ++
Sbjct: 130 GKSTLINSLT-----KTKNAKTGNKPGVTKSK----QWIKTPYFDLLDTPGILWPKFEDE 180
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
GM LA + ++D L+ +A +L L + + L++ S D+ LL
Sbjct: 181 HVGMMLALTSAIKDELLNHEELAYLLLDILKINYPELLIKRYKLEDISKDVYKLLTDIGK 240
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ S DT A+I I+ FR G G + L+R
Sbjct: 241 AR---------GCLSFGGIVDTERAAKIIIDDFRTGKIGKISLER 276
>gi|449094297|ref|YP_007426788.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
gi|449028212|gb|AGE63451.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
Length = 282
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFEKQGIRSLSINSVNGQGLNQIVPASREI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + L+E +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLEEIPEDIAELF 238
>gi|344229859|gb|EGV61744.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 369
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 66/298 (22%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D ++EV DSR P N LL++ + +P V++ +K+DL + L+E + H
Sbjct: 37 IDYILEVRDSRAPIATTNVLLERVLAR-KPKVVLYSKKDL-SVLSTPLLE---KWHNKHN 91
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTR-YHRTEV---YNTTVMVVGVPNVGKSSI 130
E + + R+ + I D MT+ Y++ +M+VG+PNVGKS++
Sbjct: 92 EEYMVIDARSKQ---------DAKRIIDRMTKEYNKMNPPPPLGMRLMIVGMPNVGKSTL 142
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
+N LR YH T+ +T
Sbjct: 143 VNTLREVGYN--------------------YHLTDTIST--------------------- 161
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
K+ K G + GVTR+ +KIS+ P I + DTPG+ LP + N E + LA
Sbjct: 162 ---KRRKVAKTGGQPGVTRNTSEIIKISQWPEISVHDTPGVFLPTVKNSETMLSLALVGC 218
Query: 251 LQDHLVGEINIADYILFYLNRTG--NYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
+ V + ADY+L+ LN RY ++ +D P++ + LL A + K+
Sbjct: 219 VNSSFVDPVIQADYLLYLLNLQDEPGARYSEY--MDHPTNSVDELLFNIAKTRNKLKK 274
>gi|167040344|ref|YP_001663329.1| HSR1-like GTP-binding protein [Thermoanaerobacter sp. X514]
gi|300914428|ref|ZP_07131744.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307724336|ref|YP_003904087.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
gi|166854584|gb|ABY92993.1| GTP-binding protein, HSR1-related [Thermoanaerobacter sp. X514]
gi|300889363|gb|EFK84509.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307581397|gb|ADN54796.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
Length = 277
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + V+N + ++L LNK DL +
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRLIL-LNKADLADDVIT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E + KG++ + +++T + E+ T
Sbjct: 68 DLWIEYFK------------------GKGIEAVK------VNSITGFGLKEINEAT---- 99
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N + ++K K ++P L+ M+VGVPNVG
Sbjct: 100 -----------NKVCQDILEKKKQKGMIPRLRG------------------MIVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P +LDTPGI P+ D+ +
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRA-LHWIKT---PYFDLLDTPGILWPKFDDKK 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + +D+ ++ LL +
Sbjct: 182 VGIMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVNEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---KKRGCLLARGEV----DTLKTSHILLEDFRKGKLGRISLER 276
>gi|428179013|gb|EKX47886.1| hypothetical protein GUITHDRAFT_106434 [Guillardia theta CCMP2712]
Length = 263
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 72/304 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M ++ IE+ +K D+VIEV D+R+P T +Q+ + R V+VLNK+DLI
Sbjct: 1 MAEAVRKIEQRIKVSDMVIEVRDARIPLTSECARIQELLARKR-RVIVLNKQDLILPSER 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EK RK FT+ KG D +T
Sbjct: 60 ----EKWRK--------FFTD------KG------------DTVT--------------- 74
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A+ +++K+ ++P+ H ++R RT + M+VG+PN G
Sbjct: 75 ---------FTQAVHGANIKE-----LMPSELHARGLISRLDRTLL----CMIVGIPNTG 116
Query: 181 KSSIINALRSSHMKKGKAVPVGPKA------GVTRSVMSQVKISEKPLIYILDTPGISLP 234
KS++IN LR+ K GK G A GVT+ V S ++ KP +++DTPGI
Sbjct: 117 KSTLINTLRNFGYKDGKQKSPGKVANTGALPGVTKHV-STIQFHVKPPSFLVDTPGIVKM 175
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+D ++ G++LA ++D L+ + +A++++ L+ + Y+ +L D+ +L
Sbjct: 176 DLDVID-GLKLALTGAIKDSLIDPLILAEFLIHMLSMRQSTNYLTELSLPTDCTDLGEIL 234
Query: 295 AKAA 298
A
Sbjct: 235 TAVA 238
>gi|221134847|ref|ZP_03561150.1| ribosomal biogenesis GTPase [Glaciecola sp. HTCC2999]
Length = 337
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 144/348 (41%), Gaps = 90/348 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL----IN 56
M + LK++++ L +VDI+IEV D+R+P++ N + + ++ P + +LNK DL I
Sbjct: 10 MHKTLKEVKETLPSVDILIEVLDARIPYSSENPEIAK-IRGDTPCLKILNKADLADPIIT 68
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
++ ++ +E N +G+Q
Sbjct: 69 AQWQASLE---------------------NERGIQ------------------------- 82
Query: 117 VMVVGVPNVGKS-SIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
M NVGKS II+ +RS +K +V N M++G
Sbjct: 83 TMTTTTDNVGKSKQIIDKIRSVCAQKNASV---------------------KNINAMIIG 121
Query: 176 VPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
+PNVGKS++IN L + K G + VTR++ +I+ I + DTPG+ P+
Sbjct: 122 IPNVGKSTLINILAERTIAK-----TGNEPAVTRNLQ---RINLGSGIVLYDTPGVLWPK 173
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA 295
+ N G RLAA ++D + ++ + YL + F LDE D + L
Sbjct: 174 LANPNTGYRLAASGAVKDTAMEYDDVGFFAADYLIKAYPELLKARFKLDEIPDTEIEFLE 233
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
AA KR +S V + ++ + + G G + L+
Sbjct: 234 MAA-----KKRGAVMSGGRVNLH----KICEVLLNELMSGKIGQITLE 272
>gi|418568992|ref|ZP_13133332.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
gi|371978177|gb|EHO95427.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
Length = 294
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGENLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|297813513|ref|XP_002874640.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320477|gb|EFH50899.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 373
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 73/285 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M ++ I + + VD V+E+ D+R+P + LL++ ++VLNK +L E
Sbjct: 33 MAAAVRAISERIPLVDFVLEIRDARIPLSSDYELLRKFSPFPSQRIIVLNKMELA----E 88
Query: 61 SLIEEKV---RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV--YNT 115
L +K +E+ ++S + N N C V++ L LQ + H+ + T
Sbjct: 89 PLELKKCIDYFEERKYLSYAV--NSHNKEC--VKQFLNFLQ---SQVRELHKAGYSGHTT 141
Query: 116 TVMVVGVPNVGKSSIINAL----RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV 171
T+M++G+PN+GKS++ N+L R S +KGK L+H +
Sbjct: 142 TMMLLGIPNIGKSALANSLHQIGRISAAEKGK-------LKHTT---------------- 178
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
V + G T+ +MS +KI P +Y+LDTPGI
Sbjct: 179 -----------------------------VSSQPGDTKDIMS-LKIGSHPNVYVLDTPGI 208
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
P +++ E +LA + D +VGEI +A L LN + Y+
Sbjct: 209 FPPTLNDAEICSKLALTGAIPDDIVGEIKLARLFLTILNSSYEYK 253
>gi|403386846|ref|ZP_10928903.1| GTPase YlqF [Clostridium sp. JC122]
Length = 282
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+++LK VD VIE+ D+R+ + N ++ QN +P +++LNK DL E
Sbjct: 10 MAKTRRQIKENLKLVDAVIEIRDARIVKSSANPDIEDICQN-KPRIILLNKSDL---SEE 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ++ V++ + ++V+ NC G++ I P L D M + + N
Sbjct: 66 KVTKQWVKELSNEHTKVLSVNCLK--GLGLKNIKPAL----DEMLKEKHDNLRNK----- 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV N+ +TR VMVVG+PNVG
Sbjct: 115 GVVNI--------------------------------VTR----------VMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L +++ K G K GVTR ++ I K I ++DTPG+ P+ ++
Sbjct: 133 KSTFINKLAKNNIAK-----TGDKPGVTR---NKQWIKTKIGIELMDTPGVLWPKFEDET 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L + R + + L E S+ + +
Sbjct: 185 VGLDLAFTGAIKDEIMDIEELALKLIETLQVSYPERLKERYKLPELSESALENMDNIG-- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ ++ D VA + ++ FR G G++ L++
Sbjct: 243 ---RKRGAVIARGNI----DYNRVAVMLLDEFRGGKLGNISLEK 279
>gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
Length = 283
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + V + +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGD-KPKLLILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P L I D + + +
Sbjct: 66 ----------------------------------PLL--IKDWQAYFEKQGI-------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +INA S +KK A L +SD + R + + M++G+P
Sbjct: 82 ------KTLLINAKEQSTVKKLTDAAKNL-----MSDKLERLREKGIQKEGLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ E G++LA ++D+L+ + + L Y R ++ F NL+E + +I+M L
Sbjct: 183 DQEVGLKLALTGAIKDNLLPMDEVTIFGLNYFKENYPQRLMERFKGINLEEEAPEIIMDL 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K F+ +D N +F++ R G G LD+
Sbjct: 243 T----QKLGFRDDYDRFYN-------------LFVKDVRDGKLGRYTLDK 275
>gi|422809350|ref|ZP_16857761.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
gi|378752964|gb|EHY63549.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
Length = 287
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L R ++ ++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQNWLKVETVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|321315371|ref|YP_004207658.1| GTPase YlqF [Bacillus subtilis BSn5]
gi|320021645|gb|ADV96631.1| GTPase YlqF [Bacillus subtilis BSn5]
Length = 282
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + L+E +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLEEIPEDIAELF 238
>gi|50411299|ref|XP_457034.1| DEHA2B01562p [Debaryomyces hansenii CBS767]
gi|49652699|emb|CAG85020.1| DEHA2B01562p [Debaryomyces hansenii CBS767]
Length = 369
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 128/298 (42%), Gaps = 74/298 (24%)
Query: 14 NVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNK------RDLINSKHESLIEEKV 67
+D+V+EV DSR P + +N L + + ++L K DLI H++ EE
Sbjct: 36 QIDLVLEVRDSRAPVSTKNVLFDRVLAQKEKIILYTKKDLSVLKSDLIRKWHDASNEE-- 93
Query: 68 RKEQSHISEVIFTNCRNPNCKG-VQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
+F + R+ KG QKI+ + MT +M++G+PNVG
Sbjct: 94 ---------CLFIDARS---KGDAQKIIDLVGKRYYAMTP---PPPLGLRLMIIGMPNVG 138
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS+++N LR NVG SS I
Sbjct: 139 KSTLVNTLR------------------------------------------NVGYSSKIT 156
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
S K K G + GVTR+ +++S KP I + DTPG+ LP + + E + L+
Sbjct: 157 GAISG--KNRKVAKTGGQPGVTRATSEIIRLSTKPDILVYDTPGVFLPTVKDNETMLALS 214
Query: 247 ACATLQDHLVGEINIADYILFYLN---RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
+ + + ADY+L+ LN TG+ +Y ++ +D P++ I LL A+K+
Sbjct: 215 LIGCVHTSFIDPVIQADYLLYLLNLQDPTGS-KYKEY--IDHPTNSIDELLYHIALKR 269
>gi|57651812|ref|YP_186118.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
COL]
gi|87162211|ref|YP_493833.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194951|ref|YP_499751.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151221365|ref|YP_001332187.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509409|ref|YP_001575068.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142033|ref|ZP_03566526.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452542|ref|ZP_05700548.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|262048141|ref|ZP_06021028.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262051870|ref|ZP_06024086.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|269202859|ref|YP_003282128.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|282920027|ref|ZP_06327756.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|284024236|ref|ZP_06378634.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
132]
gi|294848238|ref|ZP_06788985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|296274800|ref|ZP_06857307.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MR1]
gi|304381193|ref|ZP_07363846.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014434|ref|YP_005290670.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|384869777|ref|YP_005752491.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131]
gi|386728926|ref|YP_006195309.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387142852|ref|YP_005731245.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|387602518|ref|YP_005734039.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|404478583|ref|YP_006710013.1| GTPase protein [Staphylococcus aureus 08BA02176]
gi|415686433|ref|ZP_11450522.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417648959|ref|ZP_12298771.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|418281427|ref|ZP_12894238.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|418286379|ref|ZP_12899025.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|418309862|ref|ZP_12921413.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|418317684|ref|ZP_12929100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|418570773|ref|ZP_13135034.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|418579074|ref|ZP_13143169.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418649313|ref|ZP_13211341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|418658317|ref|ZP_13220049.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873497|ref|ZP_13427792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|418886504|ref|ZP_13440652.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418903452|ref|ZP_13457493.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906178|ref|ZP_13460205.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911850|ref|ZP_13465833.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925476|ref|ZP_13479378.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928500|ref|ZP_13482386.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418948218|ref|ZP_13500538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955486|ref|ZP_13507426.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|418980052|ref|ZP_13527840.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|419774366|ref|ZP_14300336.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|421150193|ref|ZP_15609849.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742360|ref|ZP_16796366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745526|ref|ZP_16799465.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785073|ref|ZP_18211876.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|440706067|ref|ZP_20886816.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|440734689|ref|ZP_20914301.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443639731|ref|ZP_21123732.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
gi|57285998|gb|AAW38092.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
COL]
gi|87128185|gb|ABD22699.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202509|gb|ABD30319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374165|dbj|BAF67425.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368218|gb|ABX29189.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859760|gb|EEV82602.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|259160271|gb|EEW45299.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|259163707|gb|EEW48262.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262075149|gb|ACY11122.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|269940735|emb|CBI49116.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|282594743|gb|EFB99727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|283470456|emb|CAQ49667.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|294825038|gb|EFG41460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|304340176|gb|EFM06117.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198483|gb|EFU28812.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140941|gb|EFW32788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144344|gb|EFW36110.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313912|gb|AEB88325.1| Possible GTP-binding protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329728952|gb|EGG65366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|365165249|gb|EHM57077.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|365167087|gb|EHM58563.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|365237985|gb|EHM78824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|365244952|gb|EHM85604.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|371982953|gb|EHP00101.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|374363131|gb|AEZ37236.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|375029686|gb|EHS23011.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|375038869|gb|EHS31824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366034|gb|EHS70046.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370969|gb|EHS74761.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|375373165|gb|EHS76862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697101|gb|EHT21456.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725228|gb|EHT49343.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725457|gb|EHT49570.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377738412|gb|EHT62421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742467|gb|EHT66452.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744545|gb|EHT68522.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765478|gb|EHT89328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|379992215|gb|EIA13672.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|383971892|gb|EID87954.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230219|gb|AFH69466.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|394329583|gb|EJE55685.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|404440072|gb|AFR73265.1| putative GTPase protein [Staphylococcus aureus 08BA02176]
gi|421956483|gb|EKU08812.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|436431717|gb|ELP29070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507598|gb|ELP43278.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|443406382|gb|ELS64962.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
Length = 294
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|418646168|ref|ZP_13208283.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
gi|375021634|gb|EHS15130.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
Length = 294
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNTLQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|329121229|ref|ZP_08249856.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
gi|327470163|gb|EGF15626.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
Length = 286
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +HLK VD+ +E+ D+R+P + N +++ VQN +P ++VLNK DL + K
Sbjct: 10 MAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENLVQN-KPRIIVLNKSDLADVK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ Y + E N V+ V
Sbjct: 67 ---------------------------------------ITEKWIEYFKKE--NIDVIPV 85
Query: 121 GVPN-VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
N K +IN +R KA P+L ++ R + N +V M++G+P
Sbjct: 86 STYNGKDKKKLINLIRE------KAKPVL----------EKWQRRGLKNRSVRIMILGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN L S + P G T+ V++S + +LDTPG+ P+ +
Sbjct: 130 NVGKSTLINFLSGSKATRTANTP-----GHTKG-KQWVRLSSG--LDLLDTPGVLWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ ++LAA + + + +L L + +++++ + D +LL
Sbjct: 182 DQNAALKLAATGAIAGEIFDSYEVVTTLLAALKEISPQILKEKYDIEDVNQDTQILLELI 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ ++ D+ + + FR G G V LD
Sbjct: 242 GKRRGCLLPGGEI---------DSTRAEALVLTDFRSGKLGRVTLD 278
>gi|167037683|ref|YP_001665261.1| HSR1-like GTP-binding protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116098|ref|YP_004186257.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856517|gb|ABY94925.1| GTP-binding protein, HSR1-related [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929189|gb|ADV79874.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 277
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + V+N + ++L LNK DL +
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRIIL-LNKADLADDVIT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E + KG++ + +++T + E+ T
Sbjct: 68 DLWIEYFK------------------GKGIEAVK------VNSITGFGLKEINEAT---- 99
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N + ++K K ++P L+ M+VGVPNVG
Sbjct: 100 -----------NKVCQDILEKKKQKGMIPRLRG------------------MIVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P +LDTPGI P+ D+ +
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRA-LHWIKT---PYFDLLDTPGILWPKFDDKK 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + +D+ ++ LL +
Sbjct: 182 VGIMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVNEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---KKRGCLLARGEV----DTLKTSHILLEDFRKGKLGRISLER 276
>gi|313892603|ref|ZP_07826190.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
gi|313119000|gb|EFR42205.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
Length = 286
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +HLK VD+ +E+ D+R+P + N +++ VQN +P ++VLNK DL + K
Sbjct: 10 MAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENLVQN-KPRIIVLNKSDLADVK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ Y + E N V+ V
Sbjct: 67 ---------------------------------------ITEKWIEYFKKE--NIDVIPV 85
Query: 121 GVPN-VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
N K +IN +R KA P+L ++ R + N +V M++G+P
Sbjct: 86 STYNGKDKKKLINLIRE------KAKPVL----------EKWQRRGLKNRSVRIMILGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN L S + P G T+ V++S + +LDTPG+ P+ +
Sbjct: 130 NVGKSTLINFLSGSKATRTANTP-----GHTKG-KQWVRLSSG--LDLLDTPGVLWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ ++LAA + + + +L L + +++++ + D +LL
Sbjct: 182 DQNAALKLAATGAIAGEIFDSYEVVTTLLAALKEISPQILKEKYDIEDVNQDTQILLELI 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ ++ D+ + + FR G G V LD
Sbjct: 242 GKRRGCLLPGGEI---------DSTRAEALVLTDFRSGKLGRVTLD 278
>gi|365759010|gb|EHN00824.1| Mtg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 369
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 137/312 (43%), Gaps = 73/312 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ LK EK + ++++IE+ D R P + RN + D I
Sbjct: 40 KALKKFEKLIPQMNMIIELRDIRAPLSTRNVIF-----------------DRIG------ 76
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
RKE + V++T + ++P + D + ++H E+ V++
Sbjct: 77 -----RKEHDMVKLVVYTR---------KDLMPGNKPYIDKLKQWHE-ELGEKFVLLDCR 121
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+ +++ L + + K+ LP M+ G+PNVGKS
Sbjct: 122 SKIEVENLLKILEWQNYELEKSGGYLPM-----------------GYRAMITGMPNVGKS 164
Query: 183 SIINALRS-------SHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDT 228
++IN+LR+ HM ++ K G +AGVTRS ++++ K IY++DT
Sbjct: 165 TLINSLRAIFHERDREHMGSERKKVARTGAEAGVTRSTSEVIRVASKTTESKNEIYLIDT 224
Query: 229 PGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---RYVDFFNLD 284
PGI LP RI + + LA C ++++L+ I ADY+L+ +N Y R + N
Sbjct: 225 PGIGLPGRISDHNRMLGLALCGGVKNNLIDPIFQADYLLYLMNLQNFYNKKRELYPGNYV 284
Query: 285 EPSDDIVMLLAK 296
P++DI +L +
Sbjct: 285 SPTNDIYEVLRR 296
>gi|119581753|gb|EAW61349.1| mitochondrial GTPase 1 homolog (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 226
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 31 RNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC-RNPNCKG 89
RN L Q+++ ++P +LVLNK DL + + I + + E + VIFTNC ++ N
Sbjct: 55 RNPLFQETL-GLKPHLLVLNKMDLADLTEQQKIMQHLEGEG--LKNVIFTNCVKDEN--- 108
Query: 90 VQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
V++I+P + + RYHR E +MV+GVPNVGKSS+IN+LR H++KG
Sbjct: 109 VKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHLRKGTGA 164
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 199
I+P + + RYHR E +MV+GVPNVGKSS+IN+LR H++KG
Sbjct: 112 IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHLRKGTGA 164
>gi|384861837|ref|YP_005744557.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|302751066|gb|ADL65243.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
Length = 285
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 1 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 54 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 76
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 77 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 123
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 124 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 175
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 176 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGK 235
Query: 301 KK 302
K+
Sbjct: 236 KR 237
>gi|116629568|ref|YP_814740.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|238853073|ref|ZP_04643465.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282852053|ref|ZP_06261411.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311110788|ref|ZP_07712185.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|420147282|ref|ZP_14654558.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
gi|116095150|gb|ABJ60302.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus gasseri
ATCC 33323]
gi|238834321|gb|EEQ26566.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282556813|gb|EFB62417.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311065942|gb|EFQ46282.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|398401283|gb|EJN54785.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
Length = 279
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 76/343 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN ++ Q + +P +++LNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKK-KPHIIILNKSDLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I+ K TRY + E N + +
Sbjct: 67 --IQTK------------------------------------KWTRYFQDE-GNFVISMD 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N +S+ ++ + KK + + + S+ M R V + G+PN G
Sbjct: 88 AQHNTNMTSLFKIIKLAGKKKTEKL----IAKGASNPMIR----------VAIAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN + + A VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 134 KSTIINRMVGRN-----AAIVGDKPGVTRG---QSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAAC ++ + ++A +++ +L + NY+ D + +++ + ++ +
Sbjct: 186 VGYKLAACGAIKADVFHPDDVALFVIEFLKQ--NYKK-DLTKFAQATNEELENMSNPDL- 241
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+N M D + + ++ RKG G + D
Sbjct: 242 -------LLAMTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|421860563|ref|ZP_16292669.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410829749|dbj|GAC43106.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 296
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 82/353 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R + I++ LK +D+ IE+ D+R+P + RN ++ +QN +P +++LNK DL +
Sbjct: 10 MTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMIGDILQN-KPRLILLNKADLADPDMN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + R E H + I + T V
Sbjct: 69 AQWLQAFRGE-GHAALAIDAS---------------------------------TGTNVA 94
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P + + ++ K K P+ ++VG+PNVG
Sbjct: 95 QIPGEARKLLEEKIQRQLAKGMKPRPV----------------------RALIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS++IN L G++V G + G+T+ +K+ + + +LDTPGI P+ ++
Sbjct: 133 KSTLINKL------AGRSVAATGDRPGITKG-QQWIKVGFE--MELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP------SDDIVML 293
E G RLAA ++D ++ IA Y++ L R + + L+ P DDIV +
Sbjct: 184 EVGYRLAATGAIKDEILNVEEIAFYVIKQLADPYRDRLNERYGLEIPPQSSLGQDDIVEI 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
+ AI + KR ++ V + + + + + R G G + L+ +
Sbjct: 244 M--EAIGR---KRGCLMAGGCVNLE----KASSLILRDLRGGKLGRISLEEPY 287
>gi|254585127|ref|XP_002498131.1| ZYRO0G02992p [Zygosaccharomyces rouxii]
gi|238941025|emb|CAR29198.1| ZYRO0G02992p [Zygosaccharomyces rouxii]
Length = 331
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 72/308 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ L+ EK +V+E+ D R P + RN LL Q V++KR HE L
Sbjct: 26 KALRRFEKLKPQFHLVLELRDLRAPLSTRNVLLDQ----------VVDKR-----HHERL 70
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
VI+T + P+ D + ++H E+ +MV
Sbjct: 71 --------------VIYTK---------RDCFPSSSPYLDRLAQWH-AELEENFLMVDSR 106
Query: 123 PNVGKSSIINALRSSH-MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
+ I+ + H + + K + P L V+V G+PNVGK
Sbjct: 107 HRNASNHILRCIHWHHELHREKNYGLAPPL----------------GFKVLVTGMPNVGK 150
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP-LIYILDTPGISLP-RIDNL 239
S++IN++R S GK G +AGVTRS +KI + +Y++DTPG+ LP R+ +
Sbjct: 151 STLINSMRGS---SGKVARTGSEAGVTRSTSESIKIGQDGNGVYLIDTPGVGLPARLSDA 207
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---------RYVDFF--NLDEPSD 288
+ L C ++ LV ADY+L+ +N Y R + + L+EP++
Sbjct: 208 NRMLALTLCGCVKRSLVDPWIQADYLLYLMNLQLPYGTDNIKEAERKLSTYPGALEEPTN 267
Query: 289 DIVMLLAK 296
D+ ++L +
Sbjct: 268 DLEVVLNR 275
>gi|452974492|gb|EME74312.1| GTPase YlqF [Bacillus sonorensis L12]
Length = 282
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 69/296 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRK--EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
S + + +K E I + + N +G+ +ILP +
Sbjct: 65 SAVTNEWKKHFEADGIPSLAINSV---NGQGLNQILPASKE------------------- 102
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
L K KA + P R R ++VG+PN
Sbjct: 103 ---------------LLKEKFDKMKAKGVKP----------RAIRA-------LIVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L ++ K G + GVT + VK+ ++ + +LDTPGI P+ ++
Sbjct: 131 VGKSTLINRLAKKNIAK-----TGDRPGVT-TAQQWVKVGKE--LELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G++LAA ++D ++ ++A + L +L R ++L E ++IV L
Sbjct: 183 ELVGLKLAATGAIKDSIINLQDVAVFGLRFLEEHYPERLKKRYDLAEIPEEIVELF 238
>gi|149190206|ref|ZP_01868481.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
gi|148835953|gb|EDL52915.1| ribosomal biogenesis GTPase [Vibrio shilonii AK1]
Length = 312
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+PF+ N ++ Q ++ +P+V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQIDVIIEVLDARIPFSSENPMISQ-LRGDKPVVKVLNKRDLADPEKT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ + I T+ N + V KIL + ++ HR E+ N M+
Sbjct: 69 ELWIEHLEKEQGVKAMAITTS----NSQEVHKILELCRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 120 MGIPNVGKSTIINTL 134
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + Y+ R +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAIEYDEVAFYTVEYMAAQYPERLKE 217
Query: 280 FFNLDE--PSDDIVM--LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKG 335
+ +DE P D+ + L+ + KR S V + + + I + R G
Sbjct: 218 RYQIDEELPESDLELMELIGR--------KRGALQSGGRVNLH----KASEILLHELRNG 265
Query: 336 SFGSVMLD 343
+ G V L+
Sbjct: 266 TLGQVTLE 273
>gi|197303273|ref|ZP_03168314.1| hypothetical protein RUMLAC_01996 [Ruminococcus lactaris ATCC
29176]
gi|197297699|gb|EDY32258.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus lactaris
ATCC 29176]
Length = 282
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 152/346 (43%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IE+ D+R+P + RN + + +N + +++LNK DL +
Sbjct: 10 MTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKN-KARLILLNKADLAEDRR- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + Y + V V
Sbjct: 68 ----------------------------------------NDEWLEYFKEKGY-SAVKVN 86
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G SI N ++ + +K M R + + N V MVVG+PN
Sbjct: 87 SRKGGGIKSIQNVIQEACKEK----------------MERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN+L GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINSL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ G++LA +++D ++ +A ++ ++NR+ + + + E SDD +L K
Sbjct: 182 DQAVGLKLAFIGSIKDEILQTEELASELVDFINRSYPGVLEEKYAI-EHSDDKFEVLEKI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A + R + DT + A I ++ FR G G + L+
Sbjct: 241 AQSRHCLVRGNEF---------DTEKAAAILLDDFRNGRLGRITLE 277
>gi|240255778|ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana]
gi|3600035|gb|AAC35523.1| contains similarity to GTP-binding proteins [Arabidopsis thaliana]
gi|332657513|gb|AEE82913.1| GTP binding protein [Arabidopsis thaliana]
Length = 377
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 75/286 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M ++ I + + VD V+E+ D+R+P + LL++ ++VLNK +L +
Sbjct: 33 MAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLRKFSPLPSKRIIVLNKMELADP--- 89
Query: 61 SLIEEK----VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRT--EVYN 114
+E K +E++++S + N N +C V+++L LQ + H+ +
Sbjct: 90 --LELKKCIDYFEERNYLSYAV--NSHNKDC--VKQLLNFLQ---SQVRELHKAGHSGHT 140
Query: 115 TTVMVVGVPNVGKSSIINAL----RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170
TT+M++G+PNVGKS++ N+L R S +KGK L+H +
Sbjct: 141 TTMMLLGIPNVGKSALSNSLHHIGRISAAEKGK-------LKHTT--------------- 178
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V + G T+ +MS +KI P +Y+LDTPG
Sbjct: 179 ------------------------------VSSQPGDTKDIMS-LKIGSHPNVYVLDTPG 207
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
I P + + E +LA + D +VGE+ +A L LN + Y+
Sbjct: 208 IFPPNLYDAEICAKLALTGAIPDDIVGELKLARLFLTILNSSHEYK 253
>gi|392589041|gb|EIW78372.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 440
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 153/355 (43%), Gaps = 75/355 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R K + L D+++E+ DSR+P T N+ L+ ++ R N +
Sbjct: 19 MSRFTKQLPSLLSRTDVLLEIRDSRLPLTSINNNLEGAIHKWR-AERGYNPNTHPDPSVA 77
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRN--------PNCKGVQKILP--TLQHISDNMTRYHR 109
E + H+ E ++ N R+ P + + + P T+ S N TR
Sbjct: 78 PAPEASLSSYGGHVCEHIVVLNKRDLVPEWGIEPFRRAMARRFPGQTIVSASLNKTR--- 134
Query: 110 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNT 169
E+ + + M+V N+ K + H TE+
Sbjct: 135 -EIKSLSQMLV---NIAKRNP-------------------------------HATEM--- 156
Query: 170 TVMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
V+VVG+PNVGKS+++N+LR + + KA+ + G TR+V S++K+SE+PLIY D
Sbjct: 157 NVLVVGMPNVGKSTLLNSLRHQGIAGRTAKALQTSSQPGHTRTVSSRLKLSEEPLIYSYD 216
Query: 228 TPGISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL 283
+PG+ LP + E G++LA A +++ L ++ Y+L+ LN N
Sbjct: 217 SPGVMLPFLGRGQHGAERGVKLALIAGIKEGLYDIESLVAYLLYRLN---------ILNP 267
Query: 284 DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRM-----FPDTGEVARIFIEHFR 333
EP+ + LL + D+ + + M DT A+ F+E +R
Sbjct: 268 VEPA--YLRLLPPGSPPVNNADEFIDLLATRLNMRVRGGLADTPRAAKWFVEWWR 320
>gi|224533274|ref|ZP_03673868.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
gi|224513439|gb|EEF83796.1| GTP-binding protein [Borrelia burgdorferi CA-11.2a]
Length = 279
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I N+ Y V+++GVPNVG
Sbjct: 79 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKNIKNYKEK----IKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|440780920|ref|ZP_20959391.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
gi|440221508|gb|ELP60713.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
Length = 288
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 153/350 (43%), Gaps = 86/350 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ DSR+ + N + + ++ +P +++LNK DL
Sbjct: 16 MAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEIDKICKD-KPRIILLNKCDLS----- 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EEKV KE + N + N N + V
Sbjct: 70 ---EEKVTKE--------WINVLSKN---------------------------NVKALAV 91
Query: 121 GVPN-VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
N +G +SI KG+ +L + + R + V + + MVVG+P
Sbjct: 92 NSLNGLGLNSI----------KGEIDKLL------KEKIDRLKQKGVISVIIRAMVVGIP 135
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS IN M K A +G K GVT+S + I K I ++DTPG+ P+ +
Sbjct: 136 NVGKSSFIN-----KMAKNTAAKIGDKPGVTKS---KQWIKTKMGIELMDTPGVLWPKFE 187
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---RYVDFFNLDEPSDDIVMLL 294
+ G+ LA ++D + +++ + L + R Y R + + LD + + +
Sbjct: 188 EKKVGLNLAFTGAIKDEI---MDVEELALSLIERLQKYYPDRLIKRYKLDSLEETALENM 244
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K A KR +S ++ D V+ + ++ FR G G V L+R
Sbjct: 245 DKIA-----KKRGAILSKGNI----DYNRVSIMLLDEFRGGKLGQVSLER 285
>gi|16803312|ref|NP_464797.1| ribosomal biogenesis GTPase [Listeria monocytogenes EGD-e]
gi|47097415|ref|ZP_00234964.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254828635|ref|ZP_05233322.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|254911947|ref|ZP_05261959.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|254936273|ref|ZP_05267970.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|255025708|ref|ZP_05297694.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-003]
gi|284801657|ref|YP_003413522.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284994799|ref|YP_003416567.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|386043583|ref|YP_005962388.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|386046923|ref|YP_005965255.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|386050248|ref|YP_005968239.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404283763|ref|YP_006684660.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404410569|ref|YP_006696157.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404413348|ref|YP_006698935.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|405758319|ref|YP_006687595.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|16410688|emb|CAC99350.1| lmo1272 [Listeria monocytogenes EGD-e]
gi|47014214|gb|EAL05198.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258601034|gb|EEW14359.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|258608862|gb|EEW21470.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|284057219|gb|ADB68160.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284060266|gb|ADB71205.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|293589908|gb|EFF98242.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|345533914|gb|AEO03355.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|345536817|gb|AEO06257.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|346424094|gb|AEO25619.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404230395|emb|CBY51799.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404233265|emb|CBY54668.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404236201|emb|CBY57603.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|404239047|emb|CBY60448.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|441470942|emb|CCQ20697.1| Ribosome biogenesis GTPase A [Listeria monocytogenes]
gi|441474069|emb|CCQ23823.1| Ribosome biogenesis GTPase A [Listeria monocytogenes N53-1]
Length = 287
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 141/344 (40%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L R + ++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQTWLKVETVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|217973604|ref|YP_002358355.1| ribosomal biogenesis GTPase [Shewanella baltica OS223]
gi|217498739|gb|ACK46932.1| GTP1/OBG protein [Shewanella baltica OS223]
Length = 313
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 72/296 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++ Q ++ +P + +LNK DL + +
Sbjct: 10 MHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQ-LRGDKPCIKLLNKSDLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + +EQ + I TLQ MV
Sbjct: 69 AQWIEYLEREQGVKATAIT----------------TLQ-----------------AAMVK 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P++ + K VP D + RT M++G+PNVG
Sbjct: 96 KIPDICR---------------KLVPS-------RDKTEKDIRT-------MIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT++ Q +I+ + I + DTPGI P++DN
Sbjct: 127 KSTIINTLAGRVIAK-----TGNEPAVTKT---QQRINLRNGIVLSDTPGILWPKVDNEA 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLA 295
RLA ++D + ++A + Y + +NL E P DD+ +L A
Sbjct: 179 SSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALLEA 234
>gi|225551742|ref|ZP_03772685.1| GTP-binding protein [Borrelia sp. SV1]
gi|225371537|gb|EEH00964.1| GTP-binding protein [Borrelia sp. SV1]
Length = 279
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 155/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 79 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + ++ S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDSTDLALYLLEIMDQNNKNILLKKYEIYNKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|300361595|ref|ZP_07057772.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
gi|300354214|gb|EFJ70085.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
Length = 279
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 141/351 (40%), Gaps = 92/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN ++ Q + +P +++LNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKK-KPHIIILNKSDLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I+ K TRY + E N + +
Sbjct: 67 --IQTK------------------------------------KWTRYFQDE-GNFVISMD 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N +S+ ++ + KK + + + S+ M R V + G+PN G
Sbjct: 88 AQHNTNMTSLFKIIKLAGKKKTEKL----IAKGASNPMIR----------VAIAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN + + A VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 134 KSTIINRMVGRN-----AAIVGDKPGVTRG---QSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF--------NLDEPSDDIVM 292
G +LAAC ++ + ++A +++ +L + F N+ P +
Sbjct: 186 VGYKLAACGAIKADVFHPDDVALFVIEFLKQNYQKDLAKFAQATSEELENMSNPD----L 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LLA +N M D + + ++ RKG G + D
Sbjct: 242 LLA---------------MTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|320583024|gb|EFW97240.1| Cell-wall L-asparaginase II [Ogataea parapolymorpha DL-1]
Length = 363
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 120/308 (38%), Gaps = 73/308 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
LK + + +D+VIE+ D+R P T N LL + + + +VL +SLI
Sbjct: 52 ALKRMRRLAPEIDLVIELRDARAPITTTNFLLDRIFKGKQKIVLY-------TKAEQSLI 104
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+++ K+ N RN + K + YN T V +
Sbjct: 105 NQRIIKQW---------NVRNESWSFFDK------------------KRYNHTAKVANM- 136
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
I + H V+V G+PNVGKS+
Sbjct: 137 ------------------------------ILEKYNLMHPPPPLGMKVIVAGMPNVGKST 166
Query: 184 IINALRSS----HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
++N LR KK V G TR +KISE PLIY+ DTPG+ +P + N
Sbjct: 167 LVNKLRHKLAIDQGKKKDVAKVERGGGTTRVTSEMIKISEDPLIYVYDTPGVLMPTVANS 226
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + A T+ + V I ADY+L+ N + Y F P++DI LL
Sbjct: 227 KAMLTHALLRTVDNTTVDPIIAADYLLYIWNLLSPDGHFYRSF--TKTPTNDIQYLLECV 284
Query: 298 AIKKKWFK 305
A KK + K
Sbjct: 285 ARKKMYTK 292
>gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852581|ref|ZP_11909726.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740070|gb|EHI65302.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
Length = 287
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 103/356 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL +
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADQSRT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
KE E KG+
Sbjct: 70 --------KEWQQFYE----------SKGI------------------------------ 81
Query: 121 GVPNVGKSSIINALRSSHMKK----GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVV 174
K+ IN+ S +KK KA+ +SD +T+ + + T+ M++
Sbjct: 82 ------KTLAINSKEQSTVKKVTDAAKAL--------MSDKITKLRQRGIQKETLRTMII 127
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
G+PN GKS+++N L K VG K GVT+ Q + + ILDTPGI P
Sbjct: 128 GIPNAGKSTLMNRLAGK-----KVAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWP 179
Query: 235 RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---RYVDFF---NLDEPSD 288
+ ++ G++LA ++D L + + D +F +N Y R ++ F NL+ +
Sbjct: 180 KFEDQGVGLKLALTGAIKDQL---LPLDDVTIFGINYFKEYYPKRLLERFKGINLEAEAP 236
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
DI++ + +K F+ +D R + +FI+ R G G+ LD+
Sbjct: 237 DIIVTMT----QKLGFRDDYD------RFYT-------LFIKEVRDGKLGTFTLDQ 275
>gi|354559594|ref|ZP_08978841.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
gi|353541231|gb|EHC10700.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
Length = 274
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 142 GKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
GK VP L L + MV+G+PN+GKSS+IN L S K
Sbjct: 93 GKIVPELERLMAGKQERMAAKGVRARSIRAMVIGIPNIGKSSLINQLTGSAKAK-----T 147
Query: 202 GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINI 261
G K GVTR ++I +K + ++DTPG+ P+ ++ E G +LAA T++D ++ + +
Sbjct: 148 GNKPGVTRG-NQWIRIHDK--VELMDTPGLLWPKFEDPEVGNKLAATGTIRDEVLNQEEL 204
Query: 262 ADYILFYLNR---TGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMF 318
++++L L T RY EP+ + + ++ R + V
Sbjct: 205 SEWLLMQLKAYYPTSLERYT-----QEPAQLTLEGIGRS--------RGCLIKGGQV--- 248
Query: 319 PDTGEVARIFIEHFRKGSFGSVMLDR 344
D + ++IF+ FR G+ G + LDR
Sbjct: 249 -DILKASQIFLREFRAGALGKMTLDR 273
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
LK VD+V+E+ D+R+P + RN LLQQ +++ +P +++LNK DL + + + +++K
Sbjct: 20 QLKWVDVVVELGDARVPESSRNPLLQQLIKD-KPKIVLLNKADLADPQWTDIWLNELKK- 77
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV--MVVGVPNVGK 127
S V+ + GV KI+P L+ + + R V ++ MV+G+PN+GK
Sbjct: 78 ---TSPVLAVSAT--AGFGVGKIVPELERLMAGKQERMAAKGVRARSIRAMVIGIPNIGK 132
Query: 128 SSIINALRSSHMKK 141
SS+IN L S K
Sbjct: 133 SSLINQLTGSAKAK 146
>gi|255022620|ref|ZP_05294606.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-208]
Length = 287
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 141/344 (40%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ IA Y L +L R ++ ++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQNWLKVETVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K R D PD A + R+ G + D
Sbjct: 244 KXGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|451818144|ref|YP_007454345.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784123|gb|AGF55091.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 288
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 153/346 (44%), Gaps = 78/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N +++ ++ +P +++LNK DL +S
Sbjct: 10 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEG-KPRIILLNKSDLTDS--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ +E + + I V+ NC + G++ I P L
Sbjct: 66 NVTKEWIDYLTNDIVRVLEVNCLKGD--GLKNIKPML----------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPN 178
+N L+ H R + N VMVVG+PN
Sbjct: 101 ----------LNLLKEKH--------------------DRLRAKGMVNIMMRVMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + +++ K G + GVT+ S+ I I +LDTPG+ P+ ++
Sbjct: 131 VGKSTFINKMARNNIAK-----TGDRPGVTK---SKQWIKTGAGIELLDTPGVLWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
E + LA ++D ++ +A ++ L + + + + L E ++ + L A
Sbjct: 183 DETALNLAFTGAIKDEIMDIEELALKLVDRLQESYEAKLKERYKLTEVFENPLDTL--DA 240
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
I K KR +S + D +A I ++ FR G G + L+R
Sbjct: 241 IGK---KRGTLISGGQI----DYNRLAVILLDEFRAGKMGKISLER 279
>gi|21282855|ref|NP_645943.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486082|ref|YP_043303.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208111|ref|ZP_06924542.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912192|ref|ZP_07129635.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|418317166|ref|ZP_12928590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|418321912|ref|ZP_12933251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875179|ref|ZP_13429439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934145|ref|ZP_13487968.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988064|ref|ZP_13535737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741760|ref|ZP_21723717.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|448743315|ref|ZP_21725224.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
gi|21204294|dbj|BAB94991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244525|emb|CAG42954.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887354|gb|EFH26256.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886438|gb|EFK81640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|365224527|gb|EHM65792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|365239538|gb|EHM80340.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|377719852|gb|EHT44022.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770239|gb|EHT94001.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770888|gb|EHT94647.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547398|gb|ELY15667.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|445563244|gb|ELY19406.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
Length = 294
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R +N++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQHDLARLKSHYNIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|346325497|gb|EGX95094.1| GTP-binding protein [Cordyceps militaris CM01]
Length = 337
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 21/182 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKI---SEKPLI-- 223
+VVG+PNVGKS+++N+LR++ + K KA G +AGVTR + + V+I EK +
Sbjct: 129 ALVVGMPNVGKSTLLNSLRNAGISGKVAKAAKTGDQAGVTRKIGTAVRIVASDEKGGVGG 188
Query: 224 --YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
+++D+PGI P +++ E +++A ++ L+ + +ADY+L+ +NR Y +
Sbjct: 189 GVFLMDSPGIFQPYVNDGETMIKVALTHGIKKGLIHDEILADYLLYSMNRYDPTLYERYC 248
Query: 282 NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM 341
EP++DI L A K + P+ E A + +R+G G +
Sbjct: 249 ---EPTNDIYEFLTAVAEKDGKLRTG---------GVPNIPESAARVLSQWREGKLGRYV 296
Query: 342 LD 343
LD
Sbjct: 297 LD 298
>gi|315282092|ref|ZP_07870580.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
gi|313614262|gb|EFR87918.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
Length = 288
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D ++ IA Y L +L R ++ ++ S+D + LA A
Sbjct: 184 EIGYKLALTGAIKDDILQMEEIAGYGLRFLENHYPDRLQNWLKVETVSEDPIETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|422409470|ref|ZP_16486431.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
gi|313609087|gb|EFR84797.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
Length = 287
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R V++LNK D +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR-RVIILNKADTAD---- 64
Query: 61 SLIEEKVRKEQ-SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
EK KE + +E K LP + + + E +M
Sbjct: 65 ----EKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM- 104
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ + LRS MK +A+ M++G+PNV
Sbjct: 105 --------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++
Sbjct: 132 GKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G +LA ++D L+ +IA Y L +L R ++ ++ S++ V LA A
Sbjct: 184 EIGYKLALTGAIKDDLLQMEDIAGYGLRFLENHYPDRLQNWLKVETVSENPVETLAFIAE 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R D PD A + R+ G + D
Sbjct: 244 KRGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|354807458|ref|ZP_09040925.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
gi|354514040|gb|EHE86020.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
Length = 282
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 146/349 (41%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K I++ LK VD+++E+ D+R+P + N ++ + QN +P +L++NK D+ ++K
Sbjct: 10 MAKAQKQIKERLKAVDLILEIVDARVPESSINPMIAELGQN-KPTLLIMNKADMADAKRT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +K +G+ I QH S
Sbjct: 69 QQWIETFKK------------------RGITAIALDAQHKSK------------------ 92
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPIL-PTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+P + K + + + + K +A IL P ++ M VGVPNV
Sbjct: 93 -LPQIEK--VAQEILADKLAKKRAKGILNPVIR------------------AMCVGVPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+I+N L ++K AV G + GVT+ +Q + + +LDTPG+ P+ ++
Sbjct: 132 GKSTILNRL----VQKNIAV-TGNRPGVTK---NQQWLKAGQSLELLDTPGVLWPKFEDP 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G +LA + D + ++ Y L FY + +V L+ P+ D++M L
Sbjct: 184 AVGNKLALTGAISDAIYHPDDVVVYALDYFKDFYPQQLVKEYHVTPAELEMPAPDLIMAL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ FK +D FI RKG G LD
Sbjct: 244 T----KRLGFKEDYD-------------RFCMKFITDARKGKLGRFTLD 275
>gi|383754889|ref|YP_005433792.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366941|dbj|BAL83769.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 297
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 147/355 (41%), Gaps = 97/355 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE++LK VD+VIE+ D+R+P + N +L + +++ +P ++ LNK DL +S
Sbjct: 16 MKKAQRLIEENLKLVDVVIELLDARIPLSSANPMLAEIIKD-KPRMIALNKSDLADSAS- 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ Y + +
Sbjct: 74 ----------------------------------------TKKWLDYFKAQ--------- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVY--------NTTVM 172
GVP V I++++ MK+ L +++++ R +TE + M
Sbjct: 85 GVPAV----TIDSMKGKGMKQ---------LVKVAEDLAR-PKTEKFVSKGAKPRAARCM 130
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
++G+PNVGKSS+IN L + K P GVTR+ +KI + +LDTPGI
Sbjct: 131 ILGIPNVGKSSLINRLAGAVKAKAADKP-----GVTRA-KQWIKIGTN--LDLLDTPGIL 182
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL--DEPSD-- 288
P+ ++ G++LA + D + + +L + R R + F L D P +
Sbjct: 183 WPKFEDQTVGLKLAFTGAINDDIYDREQVTALLLGIMRRDYPERLAERFKLKDDVPDNGL 242
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+I+ L+ + KR V V D + I + FR G G V LD
Sbjct: 243 EILELIGR--------KRGCLVKGGVV----DLEKAQNIVLNEFRAGKLGLVTLD 285
>gi|126174081|ref|YP_001050230.1| ribosomal biogenesis GTPase [Shewanella baltica OS155]
gi|153000407|ref|YP_001366088.1| ribosomal biogenesis GTPase [Shewanella baltica OS185]
gi|160875004|ref|YP_001554320.1| ribosomal biogenesis GTPase [Shewanella baltica OS195]
gi|373949221|ref|ZP_09609182.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS183]
gi|378708247|ref|YP_005273141.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS678]
gi|386324939|ref|YP_006021056.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
BA175]
gi|386340841|ref|YP_006037207.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS117]
gi|418024893|ref|ZP_12663874.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS625]
gi|125997286|gb|ABN61361.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155]
gi|151365025|gb|ABS08025.1| GTP-binding protein HSR1-related [Shewanella baltica OS185]
gi|160860526|gb|ABX49060.1| GTP-binding protein HSR1-related [Shewanella baltica OS195]
gi|315267236|gb|ADT94089.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS678]
gi|333819084|gb|AEG11750.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
BA175]
gi|334863242|gb|AEH13713.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS117]
gi|353535748|gb|EHC05309.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS625]
gi|373885821|gb|EHQ14713.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella baltica
OS183]
Length = 313
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 72/296 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++ Q ++ +P + +LNK DL + +
Sbjct: 10 MHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQ-LRGDKPCIKLLNKSDLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + +EQ + I TLQ MV
Sbjct: 69 AQWIEYLEREQGVKATAIT----------------TLQ-----------------AAMVK 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P++ + K VP D + RT M++G+PNVG
Sbjct: 96 KIPDICR---------------KLVPS-------RDKTEKDIRT-------MIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT++ Q +I+ + I + DTPGI P++DN
Sbjct: 127 KSTIINTLAGRVIAK-----TGNEPAVTKT---QQRINLRNGIVLSDTPGILWPKVDNEA 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLA 295
RLA ++D + ++A + Y + +NL E P DD+ +L A
Sbjct: 179 SSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEA 234
>gi|345019909|ref|ZP_08783522.1| hypothetical protein OTW25_01110 [Ornithinibacillus scapharcae
TW25]
Length = 282
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 17/176 (9%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
+ M+VG+PNVGKS++IN L + + K VG + GVT+ Q+ I K +LDT
Sbjct: 121 SRAMIVGIPNVGKSTLINRLANKKIAK-----VGDRPGVTKQ---QLWIKVKKEFELLDT 172
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD 288
PGI P+ ++ G RLAA T++D L+ +I +++ YL D + +D+ +
Sbjct: 173 PGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDIVVFVIRYLQENYPTLLEDRYQIDQNEE 232
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+++++ + F+ A + N + +V+ I + R G G + L++
Sbjct: 233 EMLIIFEQIGK----FRGALESGGNV-----NFDKVSDIVLRDLRTGRLGKITLEK 279
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL--INSK 58
M + ++IE+ LK VD V+E+ D+R P + +N +LQQ +QN M+L++ KRDL +
Sbjct: 10 MAKARREIEEKLKLVDFVMELVDARAPLSSQNPMLQQVLQNKSKMILLM-KRDLADVQVT 68
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+E + K +E+ + + N ++ K +Q Q D + + + + M
Sbjct: 69 NEWI---KYFQERDIPALAVNVNDKSDVNKVIQLAKELGQKKLDKLIQ-KGIQPRASRAM 124
Query: 119 VVGVPNVGKSSIINALRSSHMKK 141
+VG+PNVGKS++IN L + + K
Sbjct: 125 IVGIPNVGKSTLINRLANKKIAK 147
>gi|450044537|ref|ZP_21837905.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|450086473|ref|ZP_21853668.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|450131251|ref|ZP_21869361.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|450175972|ref|ZP_21885493.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
gi|449153988|gb|EMB57611.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|449201504|gb|EMC02495.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|449219431|gb|EMC19398.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|449245886|gb|EMC44207.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
Length = 283
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + N +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGN-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|260770511|ref|ZP_05879444.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio furnissii CIP
102972]
gi|375132422|ref|YP_005048830.1| ribosomal biogenesis GTPase [Vibrio furnissii NCTC 11218]
gi|260615849|gb|EEX41035.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio furnissii CIP
102972]
gi|315181597|gb|ADT88510.1| ribosomal biogenesis GTPase [Vibrio furnissii NCTC 11218]
Length = 302
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ Q ++ +P+V VLNKRDL + +
Sbjct: 1 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISQ-LRGEKPVVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KE+ + I T+ N + V KIL + ++ HR E+ N M+
Sbjct: 60 ELWIEHLEKEKGVKAMAITTS----NAQEVHKILDLCRKLAP-----HREEIGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + G + VTR Q +I+
Sbjct: 98 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRVIAQTGNQPAVTRR---QQRINL 148
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 149 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 208
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +DE P D+ + +A +K+ RA R+ D + + I + R+G G
Sbjct: 209 RYQIDESPESDVEWM--EAIGRKRGALRA------GARV--DLHKASEILLHELRQGIIG 258
Query: 339 SV------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 259 QITLELPEMITQELIEVEIE 278
>gi|418070623|ref|ZP_12707898.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
gi|357540043|gb|EHJ24060.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
Length = 285
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 74/303 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 10 MAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRLIILNKQDL------ 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + TN RY++T+
Sbjct: 63 --------------ADPVLTN---------------------EWVRYYQTQ--------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G ++I A+ + H K+ + +P + +++ + R + N + M +G+PN
Sbjct: 79 -----GFAAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L ++K AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 131 VGKSTVLNRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 182
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG +A ++ Y ++ +L D+++
Sbjct: 183 QTIGMRLAFTGAIADAVFQEDVVGLYGLAYFMAHYPEALKKAYHLTDTDLQAAPHDVLVK 242
Query: 294 LAK 296
L K
Sbjct: 243 LTK 245
>gi|302191335|ref|ZP_07267589.1| hypothetical protein LineA_04927 [Lactobacillus iners AB-1]
gi|309804171|ref|ZP_07698249.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|309809273|ref|ZP_07703142.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|312871435|ref|ZP_07731530.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|312872375|ref|ZP_07732445.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|325911972|ref|ZP_08174374.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|329921303|ref|ZP_08277741.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
gi|308163754|gb|EFO66023.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|308170386|gb|EFO72410.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|311092198|gb|EFQ50572.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|311093088|gb|EFQ51437.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|325476157|gb|EGC79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|328934595|gb|EGG31099.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
Length = 279
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 92/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D++IEV D+R+P + +N ++ + + N + +++LN
Sbjct: 11 MNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIAN-KAHIIILN---------- 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK----ILPTLQHISDNMTRYHRTEVYNTT 116
++ +++ I T K QK +LP S+NM+
Sbjct: 60 ----------KADLADAIKTKAW---VKFFQKQGILVLPMDAQHSNNMS---------GL 97
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ ++ + K I A KG P++ V + G+
Sbjct: 98 IKLIKIATKDKVDKIIA-------KGAKEPVI---------------------KVAIAGI 129
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PN GKS+IIN L + A VG K GVTR Q + I ILDTPGI P+
Sbjct: 130 PNCGKSTIINRLVGRN-----ATIVGDKPGVTRG---QNWLKTDTNIQILDTPGILWPKF 181
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD----EPSDDIVM 292
D+ G++LAAC ++D + +++ ++L YL VDF E +DI +
Sbjct: 182 DDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDIDL 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LLA + M D + F++ RKG G + D
Sbjct: 242 LLAMTQL---------------FGMRDDYERFSIFFLQRLRKGKIGRITFD 277
>gi|323493947|ref|ZP_08099064.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
gi|323311888|gb|EGA65035.1| GTPase YlqF [Vibrio brasiliensis LMG 20546]
Length = 311
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ V V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTVAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPERLQE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + L+ + ++ + V D + + I + R G+ G
Sbjct: 218 RYQIDELPESDIELMEEIGRRRGALRAGGRV---------DLHKCSEILLHELRNGTLGQ 268
Query: 340 VMLDR 344
V L+R
Sbjct: 269 VTLER 273
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISE-IRGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KE + + I T+ N + V KIL + ++ HR E+ N M+
Sbjct: 69 QLWIDHFEKENNVKAMAITTS----NVQEVNKILELCRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 120 MGIPNVGKSTIINTL 134
>gi|319788757|ref|YP_004090072.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
gi|315450624|gb|ADU24186.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
Length = 298
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 149/342 (43%), Gaps = 79/342 (23%)
Query: 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
++K VD V+E+ D+R+P++ RN +++ N +P +++LNK D ++ S+ E +++
Sbjct: 24 NMKLVDAVVEITDARIPYSSRNPEIKKICGN-KPRMVLLNKADSADADVTSMWIEYYKQQ 82
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
+ T+CR+ + V K P L+ + + E ++T M G P
Sbjct: 83 GVP---ALATDCRS--GRNVNKFYPMLKELLS-----EQIEKWDTRGMT-GRP------- 124
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
+M+VG+PNVGKSS IN L
Sbjct: 125 --------------------------------------IRMMIVGIPNVGKSSFINRLAG 146
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
+ M K V + GVTR + ++ + +LD PG+ P+ D+ G RLA
Sbjct: 147 AKMAK-----VEDRPGVTR---GKQWVALEDGFELLDMPGVLWPKFDDKLVGERLAFTGA 198
Query: 251 LQDHLVGEINIADYILFYLNRTGNY------RY-VDFFNLDEPSDDIVMLL-AKAAIKKK 302
++D ++ +A +L YL +Y RY + +L EP DD+ + +++
Sbjct: 199 VKDVILDTEYLACRLLEYLAE--DYPDLLTDRYGISLEDLPEPMDDMQGCVKGYELLERV 256
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR F +S + +T A ++ FR G G + L++
Sbjct: 257 GKKRGFLISGGEI----NTERAANTVLDEFRGGKLGRLSLEK 294
>gi|259500646|ref|ZP_05743548.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315653519|ref|ZP_07906440.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
gi|259168030|gb|EEW52525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315489210|gb|EFU78851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
Length = 281
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 92/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D++IEV D+R+P + +N ++ + + N + +++LN
Sbjct: 13 MNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIAN-KAHIIILN---------- 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK----ILPTLQHISDNMTRYHRTEVYNTT 116
++ +++ I T K QK +LP S+NM+
Sbjct: 62 ----------KADLADAIKTKAW---VKFFQKQGILVLPMDAQHSNNMS---------GL 99
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ ++ + K I A KG P++ V + G+
Sbjct: 100 IKLIKIATKDKVDKIIA-------KGAKEPVI---------------------KVAIAGI 131
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PN GKS+IIN L + A VG K GVTR Q + I ILDTPGI P+
Sbjct: 132 PNCGKSTIINRLVGRN-----ATIVGDKPGVTRG---QNWLKTDTNIQILDTPGILWPKF 183
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD----EPSDDIVM 292
D+ G++LAAC ++D + +++ ++L YL VDF E +DI +
Sbjct: 184 DDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLNLLVDFCKTSAEKIEKINDIDL 243
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LLA + M D + F++ RKG G + D
Sbjct: 244 LLAMTQL---------------FGMRDDYERFSIFFLQRLRKGKIGRITFD 279
>gi|260949105|ref|XP_002618849.1| hypothetical protein CLUG_00008 [Clavispora lusitaniae ATCC 42720]
gi|238846421|gb|EEQ35885.1| hypothetical protein CLUG_00008 [Clavispora lusitaniae ATCC 42720]
Length = 367
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 62/292 (21%)
Query: 14 NVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH 73
VD+V+EV DSR P + N L + + ++L +K+DL S+++ K+ +
Sbjct: 36 QVDLVLEVRDSRAPISTTNVLFDRVLARKEKLILY-SKQDL------SILKPKLLAKWHA 88
Query: 74 ISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 133
+ +F + R+ K ++IL + I D+ T M++G+PNVGKS+++N
Sbjct: 89 NEKFLFVDTRSK--KDAKRIL---KAIEDHYTNMVPPPPLGLRTMIIGMPNVGKSTLVNT 143
Query: 134 LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 193
LRS + + + D ++
Sbjct: 144 LRS-----------VGYIASLGDRVS---------------------------------T 159
Query: 194 KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQD 253
KK K G + GVTR+ +++S+ P I + DTPG+ LP + + E + L +
Sbjct: 160 KKSKVAKTGGQPGVTRNTSEIIRLSKDPDILVYDTPGVFLPTVKDGETMLALGLVGCVHT 219
Query: 254 HLVGEINIADYILFYLN---RTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302
+ + ADY+L+ LN TG +Y ++ +D P++ I LL A K+K
Sbjct: 220 SFIDPVIQADYLLYLLNLQDPTGA-KYNEY--IDHPTNSIHELLYNIAKKRK 268
>gi|182416692|ref|ZP_02948093.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237667586|ref|ZP_04527570.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182379454|gb|EDT76947.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237655934|gb|EEP53490.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 293
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 154/350 (44%), Gaps = 86/350 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N + + ++ +P +++LNK DL +SK
Sbjct: 10 MRKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLLEG-KPRIILLNKSDLTDSK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E + + +V+ NC +G++ I P L
Sbjct: 67 -VTKEWIDYLTNDNVKVLEVNCLK--GEGLKAIKPAL----------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMK---KGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+N L+ H + KG A I T VMVVG+P
Sbjct: 101 ----------LNLLKEKHDRLKAKGMAKII---------------------TRVMVVGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+ IN + +++ K G + GVT+ S+ I I +LDTPG+ P+ +
Sbjct: 130 NVGKSTFINKMARNNIAK-----TGDRPGVTK---SKQWIKTAIGIELLDTPGVLWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD---DIVMLL 294
+ + LA ++D ++ +A ++ L + + + + L E + D + L+
Sbjct: 182 DDTTALNLAFTGAIKDEIMDIEELALKLVERLQKNYETKLKERYKLSEICENPLDTLDLI 241
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K KR +S + D +A I ++ FR G G++ L+R
Sbjct: 242 GK--------KRGALISGGQI----DYNRIAVILLDEFRGGKIGNISLER 279
>gi|423078053|ref|ZP_17066740.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 21052]
gi|357552433|gb|EHJ34206.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 21052]
Length = 276
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 1 MAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRLIILNKQDL------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + TN RY++T+
Sbjct: 54 --------------ADPVLTN---------------------EWVRYYQTQ--------- 69
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G ++I A+ + H K+ + +P + +++ + R + N + M +G+PN
Sbjct: 70 -----GFAAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPN 121
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L ++K AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 122 VGKSTVLNRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 173
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG +A ++ Y ++ +L D+++
Sbjct: 174 QTIGMRLAFTGAIADAVFQEDVVGLYGLAYFMAHYPEALKKAYHLTDTDLQAAPHDVLVK 233
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K + F F+ + + G++ R +E
Sbjct: 234 LTKT----QGFGEEFNRMAERLIFDARQGKLGRFTLE 266
>gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|349611413|ref|ZP_08890649.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|348608735|gb|EGY58705.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 92/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D++IEV D+R+P + +N ++ + + N + +++LN
Sbjct: 11 MNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIAN-KAHIIILN---------- 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQK----ILPTLQHISDNMTRYHRTEVYNTT 116
++ +++ I T K QK +LP S+NM+
Sbjct: 60 ----------KADLADAIKTKAW---VKFFQKQGILVLPMDAQHSNNMS---------GL 97
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ ++ + K I A KG P++ V + G+
Sbjct: 98 IKLIKIATKDKVDKIIA-------KGAKEPVI---------------------KVAIAGI 129
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PN GKS+IIN L + A VG K GVTR Q + I ILDTPGI P+
Sbjct: 130 PNCGKSTIINRLVGRN-----ATIVGDKPGVTRG---QNWLKTDTNIQILDTPGILWPKF 181
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD----EPSDDIVM 292
D+ G++LAAC ++D + +++ ++L YL VDF E +DI +
Sbjct: 182 DDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLREQYLDLLVDFCKTSAEKIEKINDIDL 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LLA + M D + F++ RKG G + D
Sbjct: 242 LLAMTQL---------------FGMRDDYERFSIFFLQRLRKGKIGRITFD 277
>gi|353238419|emb|CCA70366.1| hypothetical protein PIIN_04305 [Piriformospora indica DSM 11827]
Length = 420
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 129/281 (45%), Gaps = 77/281 (27%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR---------PM--VLVLNKRDL 54
K++ + L N +V+E D+R+P T N ++ ++ R P+ V+V NK DL
Sbjct: 24 KNLPQLLSNTHVVLEARDARLPLTSINPNFEEMLEKWRKNRGGGLAGPVERVVVYNKVDL 83
Query: 55 INSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL-QHISDNMTRYHRTEVY 113
+ E + + H + IFT + + K + +L +H++D + R H E+
Sbjct: 84 VPKWGVVPFERALSRHFDH--KTIFTTAK------LGKSMGSLHKHLTD-IARTHGKEIQ 134
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMV 173
+ V+VVG+PNVGKS+I+N LRS +K ++
Sbjct: 135 HLNVLVVGMPNVGKSTILNHLRSYGIKGARS----------------------------- 165
Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
NAL++S + G+TR+ +++++ + PLIY +D+PG+ L
Sbjct: 166 ------------NALKTSRL-----------PGMTRATSNRMRLCDDPLIYSIDSPGVML 202
Query: 234 PRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
P + + E ++++ +++ L +A Y+LF LN
Sbjct: 203 PFLGYGDEARERAVKISLILAMKESLFDYEQLAAYLLFRLN 243
>gi|325680801|ref|ZP_08160339.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
gi|324107581|gb|EGC01859.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
Length = 297
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 148/342 (43%), Gaps = 79/342 (23%)
Query: 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
+LK VD V+E+ D+R+P++ RN +++ + +P +++LNK D + S+ E +K+
Sbjct: 24 NLKLVDAVVEITDARIPYSSRNPEIKK-ICGSKPRMVLLNKADSADPDITSMWIEYYKKQ 82
Query: 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 130
+ T+CR+ + V K P L+ + + E ++T M
Sbjct: 83 GVP---ALATDCRS--GRNVSKFYPMLKELLS-----EQIEKWDTRGMT----------- 121
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190
PI +M+VG+PNVGKSS IN L
Sbjct: 122 -------------GRPI----------------------RMMIVGIPNVGKSSFINRLAG 146
Query: 191 SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACAT 250
+ + K V + GVTR V + E +LD PG+ P+ D+ G RLA
Sbjct: 147 AKLAK-----VEDRPGVTRG-KQWVALDEG--FELLDMPGVLWPKFDDKLVGERLAFTGA 198
Query: 251 LQDHLVGEINIADYILFYLNRTGNY------RY-VDFFNLDEPSDDIVMLL-AKAAIKKK 302
++D ++ +A +L YLN +Y RY + +L EP D++ + +++
Sbjct: 199 VKDVILDTEYLACRLLEYLN--DDYPELLTDRYGISLDDLPEPMDEMQGCVKGYELLERV 256
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR F +S + +T A ++ FR G G + L++
Sbjct: 257 GRKRGFLISGGEI----NTERAANTVLDEFRGGKLGRLSLEK 294
>gi|18310689|ref|NP_562623.1| ribosomal biogenesis GTPase [Clostridium perfringens str. 13]
gi|168216994|ref|ZP_02642619.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|422346378|ref|ZP_16427292.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|422874628|ref|ZP_16921113.1| GTPase YlqF [Clostridium perfringens F262]
gi|18145370|dbj|BAB81413.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|182380861|gb|EDT78340.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|373225923|gb|EHP48250.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|380304269|gb|EIA16558.1| GTPase YlqF [Clostridium perfringens F262]
Length = 281
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 82/343 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+ +LK VD VIE+ D+R+P + +N + +P V++LNK DL + K
Sbjct: 15 REIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAG-KPRVILLNKSDLTDPK------- 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+T+ + + N +V+ V N
Sbjct: 67 --------------------------------------VTKAWKDSLTNDETIVLEV-NA 87
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K +NA++ + +L L+ D + ++ T MVVG+PNVGKS+ I
Sbjct: 88 LKGEGLNAIKPA---------LLKLLKEKHDRLKAKGLAKI-TTRAMVVGIPNVGKSTFI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N + +++ K G + GVT+ ++ I K I ++DTPG+ P+ ++ G+ L
Sbjct: 138 NKMAKNNIAK-----TGDRPGVTK---NKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKAAIKK 301
A ++D ++ +A ++ L T + + L E P D++ AI +
Sbjct: 190 AFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNL------DAIAR 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S N + D +A I ++ FR G G + L++
Sbjct: 244 ---KRGAIMSGNQI----DYNRIAGIILDEFRGGKIGKISLEK 279
>gi|399889398|ref|ZP_10775275.1| GTPase YlqF [Clostridium arbusti SL206]
Length = 284
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 149/349 (42%), Gaps = 84/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ DSR+ + N + ++ +P +++LNK DL
Sbjct: 12 MAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEINTICKD-KPRIILLNKCDLS----- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EEKV K + +S + R N +
Sbjct: 66 ---EEKVTK-------------------------AWINTLSKDNVRALAINSLNG----I 93
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPN 178
G+ N+ K + N L+ + + R + V N VMVVG+PN
Sbjct: 94 GLKNI-KGELDNLLK--------------------EKIDRLKQKGVMNVIIRVMVVGIPN 132
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS IN M K A +G K GVTR ++ I K I ++DTPG+ P+ +
Sbjct: 133 VGKSSFIN-----KMAKNTAAKIGDKPGVTR---TKQWIKTKIGIELMDTPGVLWPKFEE 184
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY---RYVDFFNLDEPSDDIVMLLA 295
+ G+ LA ++D + +++ + L + R Y R ++ + LD + + +
Sbjct: 185 KKVGLNLAFTGAIKDEI---MDVEELALNLVERLQKYYPNRLMERYKLDSLDETALENME 241
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A KR +S ++ D VA + ++ FR G G + L+R
Sbjct: 242 NIA-----RKRGAIISKGNI----DYNRVAVMLLDEFRGGKLGPISLER 281
>gi|258539617|ref|YP_003174116.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|385835265|ref|YP_005873039.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
gi|257151293|emb|CAR90265.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|355394756|gb|AER64186.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
Length = 285
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 69/271 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 10 MAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRIIILNKQDL------ 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + TN RY++T+
Sbjct: 63 --------------ADPVLTN---------------------EWVRYYQTQ--------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G ++I A+ + H K+ + +P + +++ + R + N + M +G+PN
Sbjct: 79 -----GFAAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L ++K AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 131 VGKSTVLNRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL 269
GMRLA + D + E + Y L Y
Sbjct: 183 QTIGMRLAFTGAIADAVFQEDVVGLYGLTYF 213
>gi|146421431|ref|XP_001486661.1| hypothetical protein PGUG_00038 [Meyerozyma guilliermondii ATCC
6260]
Length = 367
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 60/286 (20%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D ++EV DSR P + N L + + + +P +++ +K+DL S + +K+ K ++
Sbjct: 37 IDFILEVRDSRAPISTINVLFNKVLAH-KPRLIIYSKKDL--SVLKRPWTDKLHKSRNE- 92
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+ +F + RN + +KIL I D +M++G+PNVGKS+++N L
Sbjct: 93 -QYLFVDARN--KQDSKKIL---NFIKDRYFEMSPPPPLGLRMMLIGMPNVGKSTLVNTL 146
Query: 135 RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK 194
RS VG+ N G S K
Sbjct: 147 RS-------------------------------------VGLDNSGAVS---------SK 160
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDH 254
K G + GVTR+ +K+S P I + DTPG+ LP + + E + L+ +
Sbjct: 161 VRKVARTGGQPGVTRATSEIIKLSNDPDILVHDTPGVFLPTVKDAETMLALSLVGCVHTS 220
Query: 255 LVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
V + ADY+L+ LN +Y ++ +D P++ + LL K A
Sbjct: 221 FVDPVIQADYLLYILNLQDPSGSKYSEY--IDHPTNSVDELLYKIA 264
>gi|227872392|ref|ZP_03990739.1| GTP-binding protein [Oribacterium sinus F0268]
gi|227841752|gb|EEJ52035.1| GTP-binding protein [Oribacterium sinus F0268]
Length = 295
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 141/344 (40%), Gaps = 75/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ L D+++EV DSR P + RN + Q ++ + +L+ NK DL + +
Sbjct: 10 MAKAKRKMKEDLPLCDVIVEVIDSRCPNSSRNPEIDQLAKD-KIRILLFNKLDLADDERS 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E H N V+++ +Q S + +R
Sbjct: 69 KLFMEDF-----HRRGFFTLGIDARNRASVKRVSKLIQEASQPLYEKNR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
KKG IS M R MV+G+PNVG
Sbjct: 113 -------------------KKG-----------ISSQMVR----------AMVLGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ INA K G K GVTR +K+ + + +LDTPGI+ P+ +
Sbjct: 133 KSTFINAFVGRSTAK-----TGNKPGVTRG-NQWIKLDKN--VQLLDTPGITWPKFEREI 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAKAAI 299
G LA ++ D ++ ++ Y L YL R ++ + ++ E + + ++ K A+
Sbjct: 185 VGYNLALIGSINDDILPIEDLVFYFLKYLVRYYPKAILERYGIEPEEGEAALSIMDKIAV 244
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ K+ DV D V+R+ ++ FR G G + L+
Sbjct: 245 KRACIKKGGDV---------DYTRVSRLILDDFRSGRLGKISLE 279
>gi|421768951|ref|ZP_16205660.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|421771214|ref|ZP_16207874.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
gi|411185347|gb|EKS52475.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|411185800|gb|EKS52926.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
Length = 285
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 69/271 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 10 MAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRIIILNKQDL------ 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + TN RY++T+
Sbjct: 63 --------------ADPVLTN---------------------EWVRYYQTQ--------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G ++I A+ + H K+ + +P + +++ + R + N + M +G+PN
Sbjct: 79 -----GFAAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L ++K AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 131 VGKSTVLNRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL 269
GMRLA + D + E + Y L Y
Sbjct: 183 QTIGMRLAFTGAIADAVFQEDVVGLYGLTYF 213
>gi|114562663|ref|YP_750176.1| ribosomal biogenesis GTPase [Shewanella frigidimarina NCIMB 400]
gi|114333956|gb|ABI71338.1| GTP-binding [Shewanella frigidimarina NCIMB 400]
Length = 313
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 84/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++ Q ++ +P + +LNK DL + K
Sbjct: 10 MHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSQ-LRGDKPCIKLLNKSDLADPKVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQ-KILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ E + +EQ GVQ + +LQ MV
Sbjct: 69 AQWIEYLEREQ-----------------GVQASAITSLQ-----------------PSMV 94
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+P++ + K VP H D M + RT M++G+PNV
Sbjct: 95 KSIPDLCR---------------KLVP------H-RDIMEKDIRT-------MIMGIPNV 125
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K G + VTR Q +I+ + I + DTPGI P++DN
Sbjct: 126 GKSTIINTLAGRTIAK-----TGNEPAVTR---RQQRINLRNGIVLSDTPGILWPKVDNE 177
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAA 298
RLA ++D + ++A + Y + + L P+ DI +L A
Sbjct: 178 ASSYRLAVTGAIKDTAMEYEDVAMFAAGYFLEAYPDEICERYKLQSLPASDIELLEA--- 234
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R+ R+ D +V+ + + +R G G + L+
Sbjct: 235 -----ISRSRGALRPGARV--DYHKVSELLLHEYRSGKIGLLSLE 272
>gi|190344291|gb|EDK35940.2| hypothetical protein PGUG_00038 [Meyerozyma guilliermondii ATCC
6260]
Length = 367
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 60/286 (20%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D ++EV DSR P + N L + + + +P +++ +K+DL S + +K+ K ++
Sbjct: 37 IDFILEVRDSRAPISTINVLFNKVLAH-KPRLIIYSKKDL--SVLKRPWTDKLHKSRNE- 92
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+ +F + RN + +KIL I D +M++G+PNVGKS+++N L
Sbjct: 93 -QYLFVDARN--KQDSKKIL---NFIKDRYFEMSPPPPLGLRMMLIGMPNVGKSTLVNTL 146
Query: 135 RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK 194
RS VG+ N G S K
Sbjct: 147 RS-------------------------------------VGLDNSGAVS---------SK 160
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDH 254
K G + GVTR+ +K+S P I + DTPG+ LP + + E + L+ +
Sbjct: 161 VRKVARTGGQPGVTRATSEIIKLSNDPDILVHDTPGVFLPTVKDAETMLALSLVGCVHTS 220
Query: 255 LVGEINIADYILFYLN--RTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
V + ADY+L+ LN +Y ++ +D P++ + LL K A
Sbjct: 221 FVDPVIQADYLLYILNLQDPSGSKYSEY--IDHPTNSVDELLYKIA 264
>gi|291542666|emb|CBL15776.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus bromii
L2-63]
Length = 290
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 71/343 (20%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+ LK VD V E+ D+R+P + RN L + VQN +P V++LNK D+ N
Sbjct: 14 MTKTKRQIQSSLKLVDAVAEIIDARIPVSSRNPDLAKLVQN-KPRVILLNKCDMANQTAT 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +K Q+ ++ I +C++ +G+ K P + TVM
Sbjct: 73 KMWIDYFKK-QNLVA--IPVDCKS--GRGLDKFAPAV-----------------NTVMSH 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + + ++N PT++ +M+VG+PNVG
Sbjct: 111 KIARLKEKGMVN----------------PTIR------------------IMIVGIPNVG 136
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN + +KK +A V + GVTR +Q K L +LDTPG+ P+ D+
Sbjct: 137 KSSFINKM----VKKNRA-KVEDRPGVTRG--NQWYTIAKNL-EMLDTPGVLWPKFDDKT 188
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G LA ++D ++ +A +L ++ ++ F L+ ++D+ + + +K
Sbjct: 189 VGEHLAFTGAVKDQILDIELLAVRLLDFIKELKPADFITRFKLE--NEDVENIDSYELLK 246
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR VS + DT A + ++ FR G + ++
Sbjct: 247 MIGKKRGMLVSGGEI----DTERAAIMLLDEFRSAKLGRITVE 285
>gi|258514488|ref|YP_003190710.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
gi|257778193|gb|ACV62087.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
Length = 283
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 74/334 (22%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
++LK VD+V+E+ D+R+P + RN ++ + +P ++VLNK DL + + +L + ++ +
Sbjct: 19 ENLKLVDVVVELLDARIPCSSRNPVINDLLSK-KPRLIVLNKSDLADPNYTALWKRELAE 77
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
+ + +V + G++ I P L +++
Sbjct: 78 PGAMVVDV-----NSVKGSGIKAITPALNKLAE--------------------------E 106
Query: 130 IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
++N L++ KG+ TR R MVVG+PNVGKS IN L
Sbjct: 107 VMNKLKN----KGR--------------RTRAVRC-------MVVGIPNVGKSFFINTLV 141
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
+ K G K GVTR +K+++ + +LDTPGI P+ D+ E +LA
Sbjct: 142 KRKITK-----TGDKPGVTRG-QQWIKVAKD--LELLDTPGILWPKFDDQEVAYKLAVTG 193
Query: 250 TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD 309
++ ++ ++ + +L + ++ + L + LL +AI + R F
Sbjct: 194 AIKSEVLDIKELSFRLALWLRDNHPHVLLERYKLSNLPNKAEELL--SAIGR---SRGFL 248
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
VS V D + A + ++ FR G G LD
Sbjct: 249 VSGGIV----DNHKAAVLLLKEFRDGLLGRFTLD 278
>gi|166031982|ref|ZP_02234811.1| hypothetical protein DORFOR_01684 [Dorea formicigenerans ATCC
27755]
gi|166028435|gb|EDR47192.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
ATCC 27755]
Length = 284
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 149/345 (43%), Gaps = 79/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IE+ D+R+P + RN + + +N + +++LNK DL +
Sbjct: 10 MTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKN-KARLIILNKSDLAEERWN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +K+ H+ +V N R GV+ + +Q R
Sbjct: 69 EAWTEYFKKKGFHVVKV---NSRKGG--GVKSVQSVIQEACKAKIERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K I+N P+ MVVG+PNVG
Sbjct: 113 ------KRGILNR------------PV----------------------RAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN+L A G K GVT+ ++++++ + +LDTPGI P+ ++
Sbjct: 133 KSTFINSLAGKA-----AAKTGNKPGVTKG-KQWIRLNKQ--VELLDTPGILWPKFEDQT 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDEPSDDIVMLLAKAA 298
G+RLA +++D ++ +A ++ +L NY V + + + D VML A
Sbjct: 185 VGLRLALIGSIKDEVLQTEELAAELIRFL--AANYPGVLENKYTITAAPDPYVMLGRIAE 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R V N + DT + A I ++ FR+G G + L+
Sbjct: 243 ------SRHCLVRGNEL----DTEKAAMILMDDFREGKLGRLTLE 277
>gi|389575883|ref|ZP_10165911.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
gi|389311368|gb|EIM56301.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
Length = 285
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK +D++IE+ D+R+PF+GRN ++ ++ N + +++LNK DL +
Sbjct: 10 MTKAKRQMQEDLKLIDLIIELIDARIPFSGRNPDIR-TMGNGKARLIILNKADLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ++ Y++ + VM+
Sbjct: 65 -------------------------------------ERLNRKWMEYYKEQ--GAQVMLT 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH-ISDNMTRYHRTEVYNTTV--MVVGVP 177
N +G I P +Q + + R R + N + MV G+P
Sbjct: 86 DARN----------------RGSLKQIQPLIQEACKEKIERNLRRGIKNKPIRAMVAGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
NVGKS+ IN++ GKA G K GVT+ + I + +LDTPGI PR
Sbjct: 130 NVGKSTFINSV------SGKASTKTGNKPGVTKG---KQWIHLNKGLDLLDTPGILWPRF 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
D+ E G+R+A ++ D ++ ++ ++ YL + + +++DE S + +L
Sbjct: 181 DDPEAGVRMAFIGSVNDEILQLEELSLKLIEYLCERYSGVLKERYDVDE-SLESAKILES 239
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+ + + +VS + A I ++ FR G G + L+
Sbjct: 240 IAVNRNCLAKGNEVS---------YAKAAAILMDEFRSGRLGRITLE 277
>gi|311068126|ref|YP_003973049.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|419823894|ref|ZP_14347427.1| GTPase YlqF [Bacillus atrophaeus C89]
gi|310868643|gb|ADP32118.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|388471931|gb|EIM08721.1| GTPase YlqF [Bacillus atrophaeus C89]
Length = 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN ++++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + K KE + + + N +G+ +I+P+ +
Sbjct: 65 AAVT-KQWKEHFEKQGIPSLSIDSVNGQGLNQIVPSSKE--------------------- 102
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L + K KA + P R R +++G+PNVG
Sbjct: 103 -------------LLQEKIDKRKAKGVKP----------RAIRA-------LIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITIS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + L+E +DI L
Sbjct: 185 VGLRLAITGAIKDSIINLQDVAVFGLRFLEEHYPDRLKERYGLEEIPEDIAELF 238
>gi|336364501|gb|EGN92858.1| hypothetical protein SERLA73DRAFT_190431 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388547|gb|EGO29691.1| hypothetical protein SERLADRAFT_457795 [Serpula lacrymans var.
lacrymans S7.9]
Length = 430
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 21/182 (11%)
Query: 162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISE 219
H TE+ V+VVG+PNVGKS+++NALR+ + + KA+ G TR++ +++KISE
Sbjct: 152 HATEM---NVLVVGMPNVGKSTLLNALRNIGISGRTPKALQTSASPGHTRTLSTRLKISE 208
Query: 220 KPLIYILDTPGISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLN--RTG 273
+PL+Y D+PG+ LP + E G++LA A +++ L + Y+L+ LN
Sbjct: 209 EPLVYSFDSPGVMLPFLGKGERGAERGVKLALIAGIKESLYDVEALVAYLLYRLNVLNPV 268
Query: 274 NYRYVDFFNLD-EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHF 332
+ Y++ P++D+ L + + KR ++ DT A+ F++ +
Sbjct: 269 SPAYLELLPPSTPPTNDVTSFLEQVGQRLGMLKRGGEL---------DTVRAAKWFVKWW 319
Query: 333 RK 334
R+
Sbjct: 320 RE 321
>gi|268571227|ref|XP_002640974.1| Hypothetical protein CBG11721 [Caenorhabditis briggsae]
Length = 216
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 23/148 (15%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M LK +E L++VD+VIEVHD+R+P TGRN + +Q I +
Sbjct: 41 MSVQLKKMEAKLRSVDLVIEVHDARIPVTGRNEQFFRHLQKIEDYYYDMG---------- 90
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +V+FT+C+ + + + ++ H ++ R++RT MVV
Sbjct: 91 -------------IEKVLFTDCKKRLPRALNDVKTSMLHALESSKRFNRTVKTEYQSMVV 137
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPIL 148
G+PNVGKSS+INA+R+ + + IL
Sbjct: 138 GIPNVGKSSLINAIRTHTLGIKRKAEIL 165
>gi|291550684|emb|CBL26946.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
L2-14]
Length = 282
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 85/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IE+ D+R+P + RN + + +N + +++LNK DL +
Sbjct: 10 MTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKN-KARLILLNKADLAEDRR- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + Y+ VV
Sbjct: 68 ----------------------------------------NDEWMEYFKKQGYS----VV 83
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTL--QHISDNMTRYHRTEVYNTTV--MVVGV 176
V + KKG + + ++ + + M R + + N V MVVG+
Sbjct: 84 KV---------------NSKKGGGIKSIQSVIQEACKEKMERDRKRGILNRPVRAMVVGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
PNVGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+
Sbjct: 129 PNVGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPK 179
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA 295
++ G+RLA +++D ++ +A ++ +LN++ + + + E SDD +L
Sbjct: 180 FEDQTVGLRLAFIGSIKDEILQTEELASELVKFLNQSYPGVLEEKYTI-ESSDDNYEVLR 238
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ A + R ++ D + A I ++ FR G G + L+
Sbjct: 239 RIAESRHCLVRGSEL---------DVEKAAAILLDDFRNGRLGRLTLE 277
>gi|357238989|ref|ZP_09126325.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
gi|356752711|gb|EHI69836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
Length = 282
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 147/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL
Sbjct: 11 MSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKVDL------ 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+DN RT+ +
Sbjct: 64 ----------------------------------------ADN----ARTKEWKKYFEAQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHI-SDNMTRYHRTEVYNTTV--MVVGVP 177
G+ K+ IN+ + +KK + Q + SD + R + T+ M++G+P
Sbjct: 80 GI----KTLAINSKEQATVKK-----VTEAAQSLMSDKLDRLRERGIQKETLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + ++ ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKVLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D L+ + + L Y R V+ F NL++ + I+M +
Sbjct: 183 DELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKANYPSRLVERFKGINLEDEAPQIIMDM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K FK D G ++F++ R G G LD+
Sbjct: 243 T----RKLGFK-------------DDYGRFYQLFVKDVRDGKLGQYTLDQ 275
>gi|220928166|ref|YP_002505075.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
gi|219998494|gb|ACL75095.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
Length = 292
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 147/345 (42%), Gaps = 73/345 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I ++LK VD++IE+ D+R+PF+ RN + L+ NK L+
Sbjct: 10 MAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINS---------LIKNKPRLVAFNKS 60
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L +E+ IS +++ +
Sbjct: 61 DLADER---------------------------------ISRQWIKWYADQ--------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ + +IN++ + + KA + I N + T MVVG+PNVG
Sbjct: 79 GIDCI----LINSINGKGLNEIKAKARELMFEKIERNRAKGKLFTPVRT--MVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KSS IN + GKA V G + GVTR ++IS + + +LDTPGI P+ ++
Sbjct: 133 KSSFINKI------VGKATAVTGDRPGVTRG-KQWIRISSE--MELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E GM LA ++D ++ +A +L+ L++T N F L+ S + + L
Sbjct: 184 EVGMNLAFTGAIKDDIMDTGEVAMALLYRLSKTYNNELCTRFKLEPESINGMEPLELLET 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ KR +S + D ++ I ++ FR G G + L++
Sbjct: 244 VGR--KRGCIISKGEI----DYSRISAIVLDEFRGGKIGRITLEK 282
>gi|323691867|ref|ZP_08106121.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
gi|323504074|gb|EGB19882.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
Length = 284
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 86/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P RN + + +N + +++LNK DL + K+
Sbjct: 10 MTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKN-KGRIILLNKSDLADEKYN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ H VI N R+ G+++I P +Q R
Sbjct: 69 EKWTAWFQEKGFH---VIKVNARS--GMGLKQIQPLVQEACREKIERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K I+N R RT MVVG+PNVG
Sbjct: 113 ------KRGILN---------------------------RPVRT-------MVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN+ GKA G K GVT+ +++++ + +LDTPGI PR ++
Sbjct: 133 KSTFINSF------AGKACTKTGNKPGVTKG-NQWIRLNK--TLELLDTPGILWPRFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYL----NRTGNYRYVDFFNLDEPSDDIVMLLA 295
E G++LA ++ D ++ + +A +L +L R N RY +P +
Sbjct: 184 EVGLKLAFIGSINDEIIDKEELAAELLKFLIKHYGRNLNERY--GIETKDPYE------- 234
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+++ R+ + N + DT + A + ++ FR G G + L+
Sbjct: 235 --ALREVAQARSCLLKGNEL----DTKKAANLLLDDFRSGKLGRITLE 276
>gi|323484794|ref|ZP_08090151.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|355627810|ref|ZP_09049441.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
gi|323401900|gb|EGA94241.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|354820135|gb|EHF04561.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
Length = 284
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 86/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P RN + + +N + +++LNK DL + ++
Sbjct: 10 MTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKN-KGRIILLNKSDLADERYN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ H VI N R+ G+++I P +Q R
Sbjct: 69 EKWTAWFQEKGFH---VIKVNARS--GMGLKQIQPLVQEACREKIERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K I+N R RT MVVG+PNVG
Sbjct: 113 ------KRGILN---------------------------RPVRT-------MVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN+ GKA G K GVT+ +++++ + +LDTPGI PR ++
Sbjct: 133 KSTFINSF------AGKACTKTGNKPGVTKG-NQWIRLNK--TLELLDTPGILWPRFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYL----NRTGNYRYVDFFNLDEPSDDIVMLLA 295
E G++LA ++ D ++ + +A +L +L R N RY ++P +
Sbjct: 184 EVGLKLAFIGSINDEIIDKEELAAELLKFLIKHYGRNLNERY--GIETEDPYE------- 234
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+++ R+ + N + DT + A + ++ FR G G + L+
Sbjct: 235 --ALREVAQARSCLLKGNEL----DTKKAANLLLDDFRSGKLGRITLE 276
>gi|363755670|ref|XP_003648050.1| hypothetical protein Ecym_7407 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892086|gb|AET41233.1| hypothetical protein Ecym_7407 [Eremothecium cymbalariae
DBVPG#7215]
Length = 381
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 129/310 (41%), Gaps = 72/310 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR-PMVLVLNKRDLINSKHES 61
+ L+ I L ++ +E+ DSR P + RN L Q R P +++ KRD S
Sbjct: 27 KALQRINMLLPQQNLFLELRDSRAPLSTRNVLFDQLAMYHRIPKLIIYTKRDQC---PPS 83
Query: 62 LIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
I R + + + +CR R +V+N +
Sbjct: 84 TIAALNRWHAENSEQFMMLDCR------------------------RRADVHNLLHIF-- 117
Query: 122 VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
S N+L + + G +P+ +++ G+PNVGK
Sbjct: 118 ------KSKYNSLCTENESAGGILPL--------------------GYRILIAGMPNVGK 151
Query: 182 SSIINAL---------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-IYILDTPGI 231
S++IN+L + K+ K G G+TRSV +KIS IY+ DTPG+
Sbjct: 152 STLINSLTTLLDNNGDTADPQKRKKVARTGSHPGITRSVSESIKISNYRFGIYLYDTPGV 211
Query: 232 SLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR--TGNYRYVDFFNL---DE 285
SLP RI N + L+ C + +L+ ADY+L+ +N T + +Y D + +
Sbjct: 212 SLPARISNSNRMLALSLCGCVSPNLIDPYIQADYLLYLINLQITPSDKYADTYKKYTNGK 271
Query: 286 PSDDIVMLLA 295
P++DI +LA
Sbjct: 272 PTNDINQILA 281
>gi|386313544|ref|YP_006009709.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella
putrefaciens 200]
gi|319426169|gb|ADV54243.1| ribosome biogenesis GTP-binding protein YlqF [Shewanella
putrefaciens 200]
Length = 313
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 72/294 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++ Q ++ +P + +LNK DL + +
Sbjct: 10 MHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQ-LRGDKPCIKLLNKSDLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + +EQ + I TLQ MV
Sbjct: 69 AQWIEYLEREQGVKATAIT----------------TLQ-----------------AAMVK 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P++ + K VP D + RT M++G+PNVG
Sbjct: 96 KIPDLCR---------------KLVPS-------RDKTEKDIRT-------MIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT++ Q +I+ + I + DTPGI P++DN
Sbjct: 127 KSTIINTLAGRVIAK-----TGNEPAVTKT---QQRINLRNGIVLSDTPGILWPKVDNEA 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVML 293
RLA ++D + ++A + Y + +NL E P DD+ +L
Sbjct: 179 SSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLSELPKDDVALL 232
>gi|331091008|ref|ZP_08339850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405230|gb|EGG84766.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 283
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL +
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARIPMSSRNPDIDELGKN-KARLILLNKSDLAEDRQ- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y R + Y + V V
Sbjct: 68 ----------------------------------------TDAWAEYFRGKGY-SVVKVN 86
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G SI ++ + +K + R + + N V MVVG+PN
Sbjct: 87 SKKGGGIKSIQGVIQEACKEK----------------IERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + G++LA +++D ++ +A ++ +LN + + ++E D L+ A
Sbjct: 182 DQQVGLKLAFIGSIKDEILNTEELAGELIKFLNAHYTGVLAEKYGIEEQEDSYACLMEIA 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R + N + D +VA I + FR G G + L+
Sbjct: 242 K------NRHCLLRGNEL----DMEKVAMILTDDFRNGRLGKITLE 277
>gi|429765770|ref|ZP_19298050.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
gi|429185623|gb|EKY26597.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
Length = 317
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 151/347 (43%), Gaps = 80/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N + + +P +++LNK DL SK
Sbjct: 11 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLCSG-KPRIILLNKSDLTESKVT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ E + EV NC +G+Q+I P L +
Sbjct: 70 KAWIKELSNENVKVLEV---NCLRG--QGLQQIKPALLEL-------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L+ H ++ KA ++ + VMVVGVPN G
Sbjct: 105 -------------LKEKH-ERAKAKGLVKFMMR-----------------VMVVGVPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + +++ K G +AGVT+ S+ I + +LDTPG+ P+ ++
Sbjct: 134 KSTFINKMAKNNIAK-----TGDRAGVTK---SKQWIKTAFDMEMLDTPGVLWPKFEDET 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF---FNLDEPSDDIVMLLAKA 297
+ LA ++D + ++I + + R Y + + ++E +D + L
Sbjct: 186 TALNLAFTGAIKDEI---MDIEELAYMLVKRLQKYYPNELKARYKIEEVFEDPLETLDAI 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A KR VS ++ D +A + ++ FR G G++ L+R
Sbjct: 243 A-----RKRGCLVSGGAI----DYNRIAVMLLDEFRGGKIGNISLER 280
>gi|110799613|ref|YP_696394.1| ribosomal biogenesis GTPase [Clostridium perfringens ATCC 13124]
gi|168210660|ref|ZP_02636285.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|110674260|gb|ABG83247.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
gi|170711301|gb|EDT23483.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
Length = 281
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 82/343 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+ +LK VD VIE+ D+R+P + +N + +P V++LNK DL + K
Sbjct: 15 REIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAG-KPRVILLNKSDLTDPK------- 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+T+ + + N +V+ V N
Sbjct: 67 --------------------------------------VTKAWKDSLTNDETIVLEV-NA 87
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K +NA++ + +L L+ D + ++ T MVVG+PNVGKS+ I
Sbjct: 88 LKGEGLNAIKPA---------LLKLLKDKHDRLKAKGLAKI-TTRAMVVGIPNVGKSTFI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N + +++ K G + GVT+ ++ I K I ++DTPG+ P+ ++ G+ L
Sbjct: 138 NKMAKNNIAK-----TGDRPGVTK---NKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKAAIKK 301
A ++D ++ +A ++ L T + + L E P D++ AI +
Sbjct: 190 AFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNL------DAIAR 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S N + D +A I ++ FR G G + L++
Sbjct: 244 ---KRGAIMSGNQI----DYNRIAGIILDEFRGGKIGKISLEK 279
>gi|450164201|ref|ZP_21881202.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
gi|449242281|gb|EMC40879.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
Length = 283
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 90/355 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
K+ +N+ S +KK V ++D + + + T+ M+VG+PN
Sbjct: 82 ------KALAVNSKEQSAVKKVTEV----AKGLMTDKLVKLRERGIQKETLRTMIVGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 132 VGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFEE 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLA 295
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 184 EAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM--- 240
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 -SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|299742084|ref|XP_001832238.2| hypothetical protein CC1G_02500 [Coprinopsis cinerea okayama7#130]
gi|298405022|gb|EAU89611.2| hypothetical protein CC1G_02500 [Coprinopsis cinerea okayama7#130]
Length = 415
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 83/291 (28%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR--------------------PM 45
K + L D+V+E+ DSR+P T N L+ +++ R
Sbjct: 27 KQLPTFLARTDVVLEIRDSRLPLTSINRTLEGALRKWRLERGWDPNNPGKRLFAGQACEH 86
Query: 46 VLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105
+++LNKRDL+ + + K+ H +++FT+ P +G++ +
Sbjct: 87 LVILNKRDLVPQWGVEPFKRAMAKKFPH-QQILFTSWHRP--RGIRTL------------ 131
Query: 106 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE 165
N ++++ ++ K QH H E
Sbjct: 132 --------NEILVILPATDIAK------------------------QHP-------HALE 152
Query: 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVKISEKPLI 223
+ V+V+G+PNVGKS+++N LR +K KA G+T+++ +++K+S P I
Sbjct: 153 L---NVLVIGMPNVGKSTLLNTLRHMGIKGATSKAFQTSANPGMTQALSTRLKLSLDPPI 209
Query: 224 YILDTPGISLPRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
Y D+PG+ LP + + E G++LA A +++ L +A Y+L+ LN
Sbjct: 210 YAYDSPGVMLPYLGRGEEGAERGVKLALIAGIKEGLYDMEALAAYLLYRLN 260
>gi|400594293|gb|EJP62149.1| mitochondrial GTPase (YlqF), putative [Beauveria bassiana ARSEF
2860]
Length = 337
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 21/182 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKI--SEK-----P 221
+VVG+PNVGKS+++N+LR++ + K KA G +AGVTR + + V++ SE
Sbjct: 129 ALVVGMPNVGKSTLLNSLRNAGLSGKVAKAAKTGDQAGVTRKIGTAVRVVPSEDRGGVGG 188
Query: 222 LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
++++D+PGI P +++ E +++A ++ L+ + +ADY+L+ +NR Y +
Sbjct: 189 GVFLMDSPGIFQPYVEDGETMIKVALAHGIKKGLIHDEILADYLLYCMNRWDPKLYQRYC 248
Query: 282 NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVM 341
EP++D+ L AA+ KK K ++N E A + +R+G G +
Sbjct: 249 ---EPTNDVHEFL--AAVAKKDGKLRPGGTANIT-------EAAARVLSQWRQGKLGRYV 296
Query: 342 LD 343
LD
Sbjct: 297 LD 298
>gi|169342657|ref|ZP_02863699.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
gi|169299163|gb|EDS81233.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
Length = 281
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 82/343 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+ +LK VD VIE+ D+R+P + +N + +P V++LNK DL + K
Sbjct: 15 REIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAG-KPRVILLNKSDLTDPK------- 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+T+ + + N +V+ V N
Sbjct: 67 --------------------------------------VTKAWKNSLTNDETIVLEV-NA 87
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K +NA++ + +L L+ D + ++ T MVVG+PNVGKS+ I
Sbjct: 88 LKGEGLNAIKPA---------LLKLLKEKHDRLKAKGLAKI-TTRAMVVGIPNVGKSTFI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N + +++ K G + GVT+ ++ I K I ++DTPG+ P+ ++ G+ L
Sbjct: 138 NKMAKNNIAK-----TGDRPGVTK---NKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKAAIKK 301
A ++D ++ +A ++ L T + + L E P D++ AI +
Sbjct: 190 AFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNL------DAIAR 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ N + D +A I ++ FR G G + L++
Sbjct: 244 ---KRGAIMAGNQI----DYNRIAGIILDEFRGGKIGKISLEK 279
>gi|254481804|ref|ZP_05095047.1| putative GTPase [marine gamma proteobacterium HTCC2148]
gi|214037933|gb|EEB78597.1| putative GTPase [marine gamma proteobacterium HTCC2148]
Length = 314
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 143/343 (41%), Gaps = 80/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K++ K L +VD+VIE+ D R+P++ +N + + QN +P + +L SK +
Sbjct: 10 MHKANKEMTKILPDVDLVIELLDCRLPYSSQNPAITKLAQN-KPCIKIL-------SKSD 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + Q + V K V+ +L TL + + R +++
Sbjct: 62 LADPEMTEQWQDYFERV----------KSVKTLLTTLDQ-PETIQRL-------MSLVRE 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
VP+ KS RT V M+ G+PNVG
Sbjct: 104 LVPHKSKS----------------------------------RTHVL---AMITGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L + K G + +T+ + +++I ++ + +LDTPGI P+I N
Sbjct: 127 KSSLINILAGRKVAK-----TGNEPAITKG-LQRIRIQDE--LILLDTPGILWPKIHNEN 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLA ++D ++A Y+ YL VD +NLD V L + +
Sbjct: 179 SGYRLAVSGAIRDTATEVEDLAFYLTAYLLEYHPGLLVDRYNLDAIPKSDVEFLEELGAR 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + V D +V+ I + FR G+ G + L+
Sbjct: 239 RGCLRAGGHV---------DLEKVSSILVNEFRSGTLGRISLE 272
>gi|346308009|ref|ZP_08850137.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
gi|345904364|gb|EGX74112.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
Length = 284
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 149/345 (43%), Gaps = 79/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IE+ D+R+P + RN + + +N + +++LNK DL +
Sbjct: 10 MTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKN-KARLIILNKSDLAEERWN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +K+ H+ +V N R GV+ + +Q R
Sbjct: 69 EAWTEYFKKKGFHVVKV---NSRKGG--GVKSVQSVIQEACKAKIERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K I+N P+ MVVG+PNVG
Sbjct: 113 ------KRGILNR------------PV----------------------RAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN+L A G K GVT+ ++++++ + +LDTPGI P+ ++
Sbjct: 133 KSTFINSLAGKA-----AAKTGNKPGVTKG-KQWIRLNKQ--VELLDTPGILWPKFEDQT 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDEPSDDIVMLLAKAA 298
G+RLA +++D ++ +A ++ +L NY V + + + D VML A
Sbjct: 185 VGLRLALIGSIKDEVLQTEELAAELIRFL--AANYPGVLENKYTITAAQDPYVMLGRIAE 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R V N + DT + A + ++ FR+G G + L+
Sbjct: 243 ------SRHCLVRGNEL----DTEKAAMLLMDDFREGKLGRLTLE 277
>gi|330830256|ref|YP_004393208.1| GTP-binding protein [Aeromonas veronii B565]
gi|328805392|gb|AEB50591.1| GTP-binding protein [Aeromonas veronii B565]
Length = 307
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I L +HM+K K + LP Q I +T H E+ M++G+PNVG
Sbjct: 58 ITDLWVAHMEKEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNFELRGVRAMIMGIPNVG 117
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 118 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 169
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + +DE + + LL A +
Sbjct: 170 CGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERIKARYQIDELPETEIELLEMIARQ 229
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + ++ D + + I I FR G G + L+
Sbjct: 230 RAFMRKGG---------LADLHKASEILINEFRSGLLGRISLE 263
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL +
Sbjct: 1 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPAIT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + KE+ I + T K L TL H M E+ M++
Sbjct: 60 DLWVAHMEKEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNFELRGVRAMIM 111
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 112 GIPNVGKSTLINTL 125
>gi|224532989|ref|ZP_03673597.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
gi|387826279|ref|YP_005805732.1| GTP-binding protein [Borrelia burgdorferi JD1]
gi|224512106|gb|EEF82499.1| GTP-binding protein [Borrelia burgdorferi WI91-23]
gi|312148166|gb|ADQ30825.1| GTP-binding protein [Borrelia burgdorferi JD1]
Length = 279
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+EV D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKANIVLEVLDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 79 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|168207942|ref|ZP_02633947.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|168215357|ref|ZP_02640982.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
gi|170660759|gb|EDT13442.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|170713263|gb|EDT25445.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
Length = 281
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 82/343 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+ +LK VD VIE+ D+R+P + +N + +P V++LNK DL + K
Sbjct: 15 REIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAG-KPRVILLNKSDLTDPK------- 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+T+ + + N +V+ V N
Sbjct: 67 --------------------------------------VTKAWKESLTNDETIVLEV-NA 87
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K +NA++ + +L L+ D + ++ T MVVG+PNVGKS+ I
Sbjct: 88 LKGEGLNAIKPA---------LLKLLKEKHDRLKAKGLAKI-TTRAMVVGIPNVGKSTFI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N + +++ K G + GVT+ ++ I K I ++DTPG+ P+ ++ G+ L
Sbjct: 138 NKMAKNNIAK-----TGDRPGVTK---NKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKAAIKK 301
A ++D ++ +A ++ L T + + L E P D++ AI +
Sbjct: 190 AFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNL------DAIAR 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ N + D +A I ++ FR G G + L++
Sbjct: 244 ---KRGAIMAGNQI----DYNRIAGIILDEFRGGKIGKISLEK 279
>gi|126654071|ref|ZP_01725897.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
gi|126589451|gb|EAZ83598.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
Length = 281
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 84/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDI+ E+ D+R+P + RN ++ + + N +P +L+LNK D+ +
Sbjct: 1 MAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVI-NQKPRLLILNKADMAD---- 55
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E++ RK + ++ R H+ N+ +
Sbjct: 56 ---EQETRKWVDYFAQ-----------------------------RGHKAVAINS-LEGK 82
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ V K++ + + KA + P R R M+VG+PNVG
Sbjct: 83 GLQQVTKAA--QEILKEKFDRMKAKGMKP----------RAIRA-------MIVGIPNVG 123
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K P GVT++ +K+ ++ + +LDTPGI P+ ++ E
Sbjct: 124 KSTLINRLAKKNIAKTGNTP-----GVTKA-QQWIKVGKE--LELLDTPGILWPKFEDQE 175
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D + ++A Y L +L+ R + + + +D+V
Sbjct: 176 VGFKLALTGAIKDTITNMEDLAVYGLRFLSVHYPKRMEERYGFEFVHEDLV--------- 226
Query: 301 KKWFKRAFDVSSNSVRMFPDTGE-----VARIFIEHFRKGSFGSVMLD 343
FD R+F GE VA++ + R G + D
Sbjct: 227 -----ETFDHIGKLRRVFGAGGEIDYDQVAQLIVRDIRGLQLGKLTFD 269
>gi|407474073|ref|YP_006788473.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
gi|407050581|gb|AFS78626.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
Length = 281
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 78/338 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ +LK VDIVIE+ D+R+P + +N ++ + + N +P ++++NK DL + K L +E
Sbjct: 17 LQANLKLVDIVIELLDARIPISSKNPMIDEIISN-KPRLVIMNKSDLSSEKGNKLWKEYF 75
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
E +I V+F N N G+ K+ +Q +
Sbjct: 76 --ESKNIP-VVFITATNNN--GIDKVTNEVQKV--------------------------- 103
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSII 185
+ D M + + +T+V M+VG+PNVGKS++I
Sbjct: 104 --------------------------LKDKMQKRKEKGIKSTSVRAMIVGIPNVGKSTLI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N+L K G + G+T S+ I K I +LDTPGI P+ ++ + L
Sbjct: 138 NSLAGR-----KGAKTGNRPGIT---TSKQWIKLKGDIELLDTPGILWPKFEDKRVALNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
A ++D ++ +A ++ L +++ + ++ + A K+
Sbjct: 190 AFTGAIKDEILDTETLALKLVEKLCAIDTSLIEGRYDVQVNDSTPLEVMEEIAEKRGCII 249
Query: 306 RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ D V+ I ++ FR+G G V LD
Sbjct: 250 KGGEI---------DYTRVSGILLDEFRRGIMGKVTLD 278
>gi|336126178|ref|YP_004578134.1| GTP-binding protein [Vibrio anguillarum 775]
gi|335343895|gb|AEH35177.1| GTP-binding protein [Vibrio anguillarum 775]
Length = 314
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+AV G + VTR Q +I+
Sbjct: 110 HREEVGKNIRTMIMGIPNVGKSTIINTL------AGRAVAQTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + ++A Y + YL + R +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYEDVAFYTVEYLAQAYPERLQE 220
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP----DTGEVARIFIEHFRK 334
+ +DE P D+ +W + ++ + P D + + I + R+
Sbjct: 221 RYQIDELPQSDV-----------EWME---EIGRKRGALRPGGRIDLHKASEILLHELRQ 266
Query: 335 GSFGSVMLDR 344
G G + L+R
Sbjct: 267 GILGQITLER 276
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ N +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPLISHLRGN-KPCVKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KEQ + + T+ N + V KI+ + ++ HR EV N M+
Sbjct: 72 QLWIDHFEKEQGVKAMAVTTS----NPQEVHKIMELCRKLAP-----HREEVGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|335049776|ref|ZP_08542762.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
gi|333762271|gb|EGL39775.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera sp. UPII
199-6]
Length = 287
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 148/345 (42%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++HLK +D+V+E+ D+R+P++ N ++ + N +P V+VLNK DL ++
Sbjct: 10 MAKAKRLIQEHLKMIDVVVELVDARIPWSSTNPMIGTLIGN-KPSVVVLNKADLADAAE- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ +++ + +V+ N + K +K++ ++ ++
Sbjct: 68 --VQAWIQQYEREGRQVVALNSKE--GKSGKKLVAVIRRLA------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
P L H + + + N +V M++G+PN
Sbjct: 105 ---------------------------APKLAH-------WRQRGLKNRSVRTMILGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L ++ K K G T+ V + E + +LDTPG+ P+++N
Sbjct: 131 VGKSTLINRLAGRNVAK-----TADKPGETKG-KQWVHLGE--YLDLLDTPGVLWPKLEN 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
RLAA + D + + +L L + F+L++ D + LA
Sbjct: 183 QVSAYRLAATGAISDTVFDRQTVVLQLLAELRQWYPQELQRRFSLEQLGDTPLETLAAIG 242
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R + PD ++ + ++ +R+G G + LD
Sbjct: 243 KKRGCLLRGGE---------PDWDKMYTLVLKEYREGKIGRLSLD 278
>gi|110803463|ref|YP_698994.1| ribosomal biogenesis GTPase [Clostridium perfringens SM101]
gi|182625876|ref|ZP_02953642.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
gi|110683964|gb|ABG87334.1| GTP-binding protein [Clostridium perfringens SM101]
gi|177908910|gb|EDT71402.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
Length = 281
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 82/343 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++I+ +LK VD VIE+ D+R+P + +N + +P V++LNK DL + K
Sbjct: 15 REIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAG-KPRVILLNKSDLTDPK------- 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+T+ + + N +V+ V N
Sbjct: 67 --------------------------------------VTKAWKDSLTNDETIVLEV-NA 87
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K +NA++ + +L L+ D + ++ T MVVG+PNVGKS+ I
Sbjct: 88 LKGEGLNAIKPA---------LLKLLKEKHDRLKAKGLAKI-TTRAMVVGIPNVGKSTFI 137
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N + +++ K G + GVT+ ++ I K I ++DTPG+ P+ ++ G+ L
Sbjct: 138 NKMAKNNIAK-----TGDRPGVTK---NKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNL 189
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKAAIKK 301
A ++D ++ +A ++ L T + + L E P D++ AI +
Sbjct: 190 AFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNL------DAIAR 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ N + D +A I ++ FR G G + L++
Sbjct: 244 ---KRGAIMAGNQI----DYNRIAGIILDEFRGGKIGKISLEK 279
>gi|317473603|ref|ZP_07932892.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
gi|316898893|gb|EFV20918.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
Length = 284
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 77/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +DIVIE+ D+R+PF RN + Q QN + +++LNK DL +S+
Sbjct: 10 MTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQLAQN-KSRLILLNKTDLADSRKT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E+ + + +V + + K VQ I+ ++ + + R + + N V
Sbjct: 69 ELWEQYFKDRGFFVGKV--NSQKGTGVKAVQGIV--MEACREKIERDRKRGIKNRPV--- 121
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
M+ G+PNVG
Sbjct: 122 -------------------------------------------------RAMIAGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN+L GKA G K GVT+ +K+++ I +LDTPGI P+ ++
Sbjct: 133 KSTFINSL------AGKACTKTGNKPGVTKG-KQWIKLNKN--IELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G+ LA ++++ ++ + +A ++ +L + + ++E + + +L AA
Sbjct: 184 TVGLHLALIGSIKEEILNQEEMAMELIPFLVKEYPGILAARYRVEEDKNTLKILEQIAA- 242
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R N + D + A I +E +R G G + L+
Sbjct: 243 -----NRNCKEKGNQL----DYEKAAHILLEEYRNGKLGKITLE 277
>gi|313885159|ref|ZP_07818911.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619850|gb|EFR31287.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
Length = 290
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +D+VIE+ D+R+P + RN +LQ +Q+ + ++VLNK DL + K
Sbjct: 11 MAKARREVSEKLKLIDVVIELVDARIPESSRNPILQDLIQD-KKRIIVLNKADLADPKL- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S K EQ + I N KG++K + L + +M++
Sbjct: 69 SQAWVKAYLEQGFKALSIDAQ-HNKGLKGLEKAIKELMAPEFEKLAQKGLKPRPIRLMIL 127
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS++IN R+ VG
Sbjct: 128 GIPNVGKSTLIN---------------------------RF-----------------VG 143
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
K+ I G K GVT++ +KI + +LDTPGI P+ ++ +
Sbjct: 144 KNQAI---------------TGNKPGVTKA-QRWLKIGKS--FELLDTPGILWPKFEDEQ 185
Query: 241 CGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSD-DIVMLL 294
G+ LA ++D L+ ++A +L YL+ NY + +L + ++ D+++ L
Sbjct: 186 VGINLALTGAIKDQLLHMDDLALTLLAILREHYLDSLCNYTKLSNDSLAKLTNVDLLLTL 245
Query: 295 AKAAIKKKW-FKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + W FK +D S + I FRKG G + LDR
Sbjct: 246 S-----QNWGFKDDYDAGSERL-------------INDFRKGKVGRITLDR 278
>gi|253731862|ref|ZP_04866027.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724272|gb|EES93001.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 294
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEILAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|392562098|gb|EIW55279.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 429
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 21/182 (11%)
Query: 162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK--KGKAVPVGPKAGVTRSVMSQVKISE 219
HR E+ V+VVG+PNVGKS+++NALR+ + KA+ + G+TR + +++K+S
Sbjct: 155 HRPEL---NVLVVGMPNVGKSTLLNALRNIGIAGPTPKALRTSAQPGMTRVLSTRLKLSA 211
Query: 220 KPLIYILDTPGISLPRIDN----LECGMRLAACATLQDHLVGEINIADYILFYLN--RTG 273
PL+Y D+PG+ LP + N E G++LA A +++ L +A Y+L+ LN
Sbjct: 212 DPLVYSYDSPGVMLPFLGNGDKGAERGVKLALIAGIKEGLYDTETLASYLLYRLNVLDPA 271
Query: 274 NYRYVDFFNLDEPSD-DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHF 332
+ Y+ D P D+ L A + KR PDT A FI +
Sbjct: 272 SPAYLRLLPPDTPPVLDVWEFLELLAKRLCMLKRG---------GIPDTSRAAVWFIRWW 322
Query: 333 RK 334
R+
Sbjct: 323 RE 324
>gi|375085143|ref|ZP_09731852.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
gi|374567559|gb|EHR38772.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
Length = 293
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 147/348 (42%), Gaps = 82/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I ++LK VD+VIE+ D+R+P + N +L+ + +P ++ LNK D
Sbjct: 23 MAKAKRIIVENLKLVDVVIELRDARIPNSSANPILKDLIGK-KPHLIALNKID------- 74
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++DN ++ E Y T++
Sbjct: 75 ---------------------------------------LADNNIN-NKWEEYFTSM--- 91
Query: 121 GVPNVGKSSI-INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
GKS + IN+L +++ V + L + + N VM+VG+PNV
Sbjct: 92 -----GKSVVKINSLDGKGIRQ--LVTVADELAKVKTAKFANKGVKPRNARVMIVGIPNV 144
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKSS+IN L S ++ K GVTR+ +KI + +LDTPGI P+ ++
Sbjct: 145 GKSSLINRLSGSA-----SLKTADKPGVTRA-KQWIKIKNN--LDLLDTPGILWPKFEDP 196
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE---PSDDIVMLLAK 296
E G+ LA + D + A+ +L+ L + + +DE S+++ L+ K
Sbjct: 197 EVGLNLAFTGAISDEVYDIERAAEILLWRLKDDYAKNIKERYKIDEIPQTSEELFTLVGK 256
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR F V DT + A ++ FR G G + L+R
Sbjct: 257 --------KRGFLQKGGIV----DTEKTAIAVLKDFRAGKLGKISLER 292
>gi|326204814|ref|ZP_08194668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
gi|325985026|gb|EGD45868.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
Length = 292
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 83/350 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I ++LK VD++IE+ D+R+PF+ RN + L+ NK LI
Sbjct: 10 MAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINS---------LINNKPRLIAFNKS 60
Query: 61 SLIEEKVRKEQSHISEVIFTNC---RNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTT 116
L ++++ ++ +C + N KG+ +I + + S+ + R
Sbjct: 61 DLADDRISRQWIKWYAEQGIDCILINSINGKGLNEIKARARELMSEKIER---------- 110
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
N K + +R+ MVVG+
Sbjct: 111 -------NKAKGKLFTPVRT-----------------------------------MVVGI 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
PNVGKSS IN + G+A V G + GVTR ++I+ + I +LDTPGI P+
Sbjct: 129 PNVGKSSFINKI------VGRATAVTGDRPGVTRG-KQWIRINSE--IELLDTPGILWPK 179
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLL 294
++ E GM LA ++D ++ +A +L L++T N F L+ E D+ L
Sbjct: 180 FEDQEVGMNLAFTGAIKDDIMDTGEVAMELLHRLSKTYNTELCTRFKLEPETIKDMKPLE 239
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + KR VS + D ++ I ++ FR G G V L++
Sbjct: 240 LLETVGR---KRGCIVSKGEI----DYSRISAIVLDEFRGGKIGRVTLEK 282
>gi|406676509|ref|ZP_11083695.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AMC35]
gi|423200323|ref|ZP_17186903.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AER39]
gi|423206154|ref|ZP_17192710.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AMC34]
gi|423209074|ref|ZP_17195628.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AER397]
gi|404618919|gb|EKB15839.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AER397]
gi|404619731|gb|EKB16635.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AER39]
gi|404622659|gb|EKB19520.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AMC34]
gi|404626732|gb|EKB23542.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas veronii
AMC35]
Length = 316
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I L +HM+K K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITDLWVAHMEKEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNFELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + +DE + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERIKARYQIDELPETEIELLEMIARQ 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + ++ D + + I I FR G G + L+
Sbjct: 239 RAFMRKGG---------LADLHKASEILINEFRSGLLGRISLE 272
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPAIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + KE+ I + T K L TL H M E+ M++
Sbjct: 69 DLWVAHMEKEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNFELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|302874783|ref|YP_003843416.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
gi|307690601|ref|ZP_07633047.1| ribosomal biogenesis GTPase [Clostridium cellulovorans 743B]
gi|302577640|gb|ADL51652.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
Length = 285
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 147/344 (42%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD+VIE+ D+R+ + N + + + +P +++LNK DL E
Sbjct: 12 MSKTRREIKENLKLVDVVIEIRDARIIKSSANPDIDEITKG-KPRIILLNKSDL---SDE 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E + + ++++ NC N
Sbjct: 68 RCTKEWIDNLSNEETKILTVNCLNGQ---------------------------------- 93
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ N+ K +I L+ H D M + T MVVG+PNVG
Sbjct: 94 GIRNI-KPAIDQLLKEKH-----------------DRMKAKGLINI-KTKAMVVGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + S + K G + GVT+ S+ I K I +LDTPG+ P+ ++
Sbjct: 135 KSTFINRMAGSSIAK-----TGDRPGVTK---SKQWIRTKIGIELLDTPGVLWPKFEDNR 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ +A ++ L ++ + LD ++ + + A
Sbjct: 187 VGLNLAFTGAIKDEIMDVEELALKLIEDLMVIAPKSLMERYKLDSIAETAIDNMDNIA-- 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S N++ D VA + ++ FR G G + L+R
Sbjct: 245 ---RKRGMILSGNNI----DYNRVAIMLLDEFRGGKLGKISLER 281
>gi|58337275|ref|YP_193860.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227903861|ref|ZP_04021666.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|58254592|gb|AAV42829.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227868252|gb|EEJ75673.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 284
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 148/349 (42%), Gaps = 86/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D+++EV D+R+P + RN ++++ V N +P +++LNK DL +
Sbjct: 11 MNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGN-KPHIIILNKADLADPILT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EK ++ + + N N +QK++ ++ + + T+ +
Sbjct: 70 KKWAEKFSGPDKYV--LALDSLHNTN---MQKLISLVKKAASDKTK---------KLEAR 115
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G N PT++ + + G+PN G
Sbjct: 116 GASN------------------------PTIR------------------IALAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L ++ + VG K GVT+ Q + I +LDTPGI P+ +
Sbjct: 134 KSTIINRLVGRNVAE-----VGNKPGVTKG---QRWLKTSANIQVLDTPGILWPKFSDQT 185
Query: 241 CGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSDDIVMLLA 295
G +LAA ++D + ++A Y+L +YL + ++ +++ SD ++L
Sbjct: 186 VGYKLAAFGAIKDSIFHADDVALYVLERLREYYLKDLIKFSKLNSADIENLSDADILL-- 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A+ +K+ R D + ++ RKG+ G + LDR
Sbjct: 244 --AMTEKYGMR------------DDYDRFSLFMLQRLRKGAIGRITLDR 278
>gi|449958420|ref|ZP_21809743.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|450140205|ref|ZP_21872835.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
gi|449170022|gb|EMB72763.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|449232095|gb|EMC31231.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
Length = 283
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|154503289|ref|ZP_02040349.1| hypothetical protein RUMGNA_01113 [Ruminococcus gnavus ATCC 29149]
gi|153795956|gb|EDN78376.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus gnavus
ATCC 29149]
Length = 288
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 155/355 (43%), Gaps = 83/355 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARLPVSSRNPDIDELGKN-KARLILLNKADLAEEKW- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + Y+
Sbjct: 68 ----------------------------------------NDAWAEYFKKKGYSVVK--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+N+ R +K + V + + + R + + N V MVVG+PN
Sbjct: 85 ----------VNSKRGGGIKSIQGV----IQEACKEKIERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ G+RLA +++D ++ + ++ +L ++ + +++ E S DI L +
Sbjct: 182 DQTVGLRLAFIGSIKDEILNTEELGGELIRFLVQSYPGVLQEKYDVSE-SQDIYACLEEI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD--RDFLELD 350
A + R ++ D + AR+ ++ FR G G + L+ +D+ E D
Sbjct: 241 AKNRHCLVRGSEL---------DMEKAARLLLDDFRNGRIGRITLEFPQDYEETD 286
>gi|199599537|ref|ZP_03212925.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|258508403|ref|YP_003171154.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|385828073|ref|YP_005865845.1| putative GTPase [Lactobacillus rhamnosus GG]
gi|199589578|gb|EDY97696.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|257148330|emb|CAR87303.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|259649718|dbj|BAI41880.1| putative GTPase [Lactobacillus rhamnosus GG]
Length = 285
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 69/271 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 10 MAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRLIILNKQDL------ 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + TN RY++T+
Sbjct: 63 --------------ADPVLTN---------------------EWVRYYQTQ--------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G ++I A+ + H K+ + +P + +++ + R + N + M +G+PN
Sbjct: 79 -----GFAAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L ++K AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 131 VGKSTVLNRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL 269
GMRLA + D + E + Y L Y
Sbjct: 183 QTIGMRLAFTGAIADAVFQEDVVGLYGLNYF 213
>gi|82750846|ref|YP_416587.1| ribosomal biogenesis GTPase [Staphylococcus aureus RF122]
gi|82656377|emb|CAI80796.1| probable GTP-binding protein [Staphylococcus aureus RF122]
Length = 294
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 140/343 (40%), Gaps = 73/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ R N + D V + I R G+ D
Sbjct: 245 KRGLIRC----GNEI----DYEAVIELIIYDIRNAKIGNYCFD 279
>gi|295706299|ref|YP_003599374.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
gi|338819264|sp|D5DJL5.1|RBGA_BACMD RecName: Full=Ribosome biogenesis GTPase A
gi|294803958|gb|ADF41024.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
Length = 288
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 136/295 (46%), Gaps = 66/295 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D + +
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVN-KPRIVLLNKVDKADPRVT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ ++ KEQ + I KG+++I+ + + + ++ R
Sbjct: 69 QQWLD--YYKEQGIYALAIDAQA----GKGMKQIVSSSKELLQE--KFDR---------- 110
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+R+ +KK +A+ M+VG+PNV
Sbjct: 111 --------------MRAKGVKKPRAI------------------------RAMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L S + K G + GVT++ +K+ + + +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLASKKIAK-----TGDRPGVTQA-QQWIKVGNE--LELLDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G +LA ++D ++ ++A Y L +L + +NL+E +DIV L
Sbjct: 185 TVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQRYNLNEIPEDIVELF 239
>gi|167747196|ref|ZP_02419323.1| hypothetical protein ANACAC_01910 [Anaerostipes caccae DSM 14662]
gi|167654156|gb|EDR98285.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes caccae
DSM 14662]
Length = 291
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 77/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +DIVIE+ D+R+PF RN + Q QN + +++LNK DL +S+
Sbjct: 17 MTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQLAQN-KSRLILLNKTDLADSRKT 75
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E+ + + +V + + K VQ I+ ++ + + R + + N V
Sbjct: 76 ELWEQYFKDRGFFVGKV--NSQKGTGVKAVQGIV--MEACREKIERDRKRGIKNRPV--- 128
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
M+ G+PNVG
Sbjct: 129 -------------------------------------------------RAMIAGIPNVG 139
Query: 181 KSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN+L GKA G K GVT+ +K+++ I +LDTPGI P+ ++
Sbjct: 140 KSTFINSL------AGKACTKTGNKPGVTKG-KQWIKLNKN--IELLDTPGILWPKFEDQ 190
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G+ LA ++++ ++ + +A ++ +L + + ++E + + +L AA
Sbjct: 191 TVGLHLALIGSIKEEILNQEEMAMELIPFLVKEYPGILAARYRVEEDKNTLKILEQIAA- 249
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R N + D + A I +E +R G G + L+
Sbjct: 250 -----NRNCKEKGNQL----DYEKAAHILLEEYRNGKLGKITLE 284
>gi|449927031|ref|ZP_21801063.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|450050424|ref|ZP_21840267.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
gi|449160029|gb|EMB63317.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|449202643|gb|EMC03545.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
Length = 283
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|195941463|ref|ZP_03086845.1| ribosomal biogenesis GTPase [Borrelia burgdorferi 80a]
Length = 268
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 1 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 54 -----------AQINEII------------------------KWKKYFE----------- 67
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 68 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 118
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 119 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 170
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 171 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 228
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 229 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 265
>gi|421893943|ref|ZP_16324435.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
gi|385273104|emb|CCG89807.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
Length = 287
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 152/343 (44%), Gaps = 81/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH- 59
M + ++ +E+ LK VDIV E+ D+R+P + RN +++ +++ +P +L+L K DL + K
Sbjct: 11 MAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKS-KPHLLILTKADLADPKET 69
Query: 60 -ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ L K R E + I N + P+ + + IL Q I +
Sbjct: 70 KKWLDYYKSRNEYA-----IALNSKEPSTENI--ILKKTQEI-----------------L 105
Query: 119 VVGVPNVGKSSIINA-LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+ N I NA +RS M +G+P
Sbjct: 106 ADKLANKADRGIKNAEIRS-----------------------------------MCIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N H+ K G + GVT+ Q + + +Y+LDTPGI P+ +
Sbjct: 131 NVGKSTLLN-----HLVNKKVAITGDRPGVTKK---QQWLRSRRGLYLLDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYIL-FYLNRTGNYR--YVDFFNLDEPSDDIVMLL 294
+ G +LA ++D+L ++ Y L ++N +YR ++ ++L E ++ +
Sbjct: 183 DQNVGNKLAFTGAIKDNLFANDDVVIYGLNIFIN---HYREGLMERYHLTEDDLEMELPE 239
Query: 295 AKAAIKKKWFKR-AFDVSSNSVRMFPDTGEVARI---FIEHFR 333
I +K R +D +S + + G++ R F+E F+
Sbjct: 240 LLLLITQKLGMRDDYDRASQRILLDARKGKLGRFTLDFVEEFK 282
>gi|160892724|ref|ZP_02073514.1| hypothetical protein CLOL250_00254 [Clostridium sp. L2-50]
gi|156865765|gb|EDO59196.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
L2-50]
Length = 285
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PNVGKS+ IN S+ +K VG K GVT+ +++ + I +LDTPG
Sbjct: 123 AMIVGIPNVGKSTFIN----SYARKA-CTKVGNKPGVTKG-KQWIRLGKD--IELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ D+ E G+RLA ++ D ++ ++A ++ +L D +N+++ DD
Sbjct: 175 ILWPKFDDKEVGLRLAFIGSINDEILSITDLAYELIKFLQLNYCQSLADRYNIND-DDDS 233
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V +L + A K+ K+ ++ D + A + ++ +R G G + L+R
Sbjct: 234 VHILEQIAEKRACIKKGGEL---------DIDKAAALLLDDYRSGKLGRISLER 278
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P++ +N + N ++L LNK DL ++
Sbjct: 10 MTKAKRMMQEDIKLIDVVIELIDARVPYSSKNPDIDALAANKYRLIL-LNKTDLADAAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ E +++ ++++ N R+ + G++ I ++ + + R + + N +
Sbjct: 69 AEWEAYYKEKGFFVAKI---NARSGD--GMKNISNVVKEACKEKIERDRKRGIINRPLRA 123
Query: 118 MVVGVPNVGKSSIINA 133
M+VG+PNVGKS+ IN+
Sbjct: 124 MIVGIPNVGKSTFINS 139
>gi|449875654|ref|ZP_21782326.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
gi|449930305|ref|ZP_21802010.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449980074|ref|ZP_21816995.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449999609|ref|ZP_21824578.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|450005823|ref|ZP_21826894.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|450063408|ref|ZP_21844874.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|450127425|ref|ZP_21868583.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|450158654|ref|ZP_21878970.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449163670|gb|EMB66766.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449177481|gb|EMB79782.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449186740|gb|EMB88556.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|449188279|gb|EMB90002.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|449204705|gb|EMC05491.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|449230813|gb|EMC30059.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|449242152|gb|EMC40755.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449253617|gb|EMC51563.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
Length = 283
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|449964553|ref|ZP_21811368.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
gi|449172398|gb|EMB75026.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
Length = 283
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAIGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|258423916|ref|ZP_05686801.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|417891835|ref|ZP_12535892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|418308711|ref|ZP_12920317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|418559226|ref|ZP_13123772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|418889035|ref|ZP_13443171.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418993863|ref|ZP_13541499.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|257845945|gb|EEV69974.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|341851121|gb|EGS92050.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|365237737|gb|EHM78580.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|371975517|gb|EHO92811.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|377745913|gb|EHT69888.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754545|gb|EHT78454.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 294
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPDDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|116872705|ref|YP_849486.1| ribosomal biogenesis GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741583|emb|CAK20707.1| GTPase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 287
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 141/343 (41%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ ++ KR +I
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEE---------IIHQKRRVIILNKA 60
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+EK KE F + K LP + + + E +M
Sbjct: 61 DTADEKTTKEWIDY----FAD----------KGLPAVAVNAQEGKGLFKIEQAAEKLM-- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + LRS MK +A+ M++G+PNVG
Sbjct: 105 -------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D L+ +IA Y L +L + R ++ +++ S+D + LA A K
Sbjct: 185 IGYKLALTGAIKDDLLQMEDIAGYGLRFLEKNYPDRLENWLKVEKVSEDPIETLAFIAEK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R D PD A + R+ G + D
Sbjct: 245 RGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|16800379|ref|NP_470647.1| ribosomal biogenesis GTPase [Listeria innocua Clip11262]
gi|422412731|ref|ZP_16489690.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
gi|16413784|emb|CAC96542.1| lin1311 [Listeria innocua Clip11262]
gi|313619217|gb|EFR90980.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
Length = 287
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 142/343 (41%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R R +I +K +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR--------RVIILNKAD 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E+ ++ + +E K LP + + + E +M
Sbjct: 62 TADEKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM-- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ LRS MK +A+ M++G+PNVG
Sbjct: 105 -------AEKFERLRSKGMKP-RAI------------------------RAMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D L+ IA Y L +L + R ++ +++ S+D + LA A K
Sbjct: 185 IGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLKVEKVSEDPIETLAFIAEK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R D PD A + R+ G + D
Sbjct: 245 RGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|282916493|ref|ZP_06324255.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
gi|282319933|gb|EFB50281.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
Length = 294
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAVYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|154686021|ref|YP_001421182.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens FZB42]
gi|384265188|ref|YP_005420895.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264731|ref|ZP_10042818.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387898184|ref|YP_006328480.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|154351872|gb|ABS73951.1| YlqF [Bacillus amyloliquefaciens FZB42]
gi|380498541|emb|CCG49579.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149227|gb|EIF13164.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387172294|gb|AFJ61755.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 282
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 69/296 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN ++++ ++N +P +++LNK D ++
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKN-KPRIMLLNKADKADAAVT 68
Query: 61 SLIEEKVRKEQSHISE--VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + + H E + + + N +G+ +I+P+ +
Sbjct: 69 A-------QWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKE------------------- 102
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
L K KA I P R R +++G+PN
Sbjct: 103 ---------------LLKDKFDKMKAKGIRP----------RAIRA-------LIIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 131 VGKSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + L E +DI L
Sbjct: 183 ELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPDRLKERYGLQEIPEDIAALF 238
>gi|154497937|ref|ZP_02036315.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC
29799]
gi|150272927|gb|EDN00084.1| ribosome biogenesis GTP-binding protein YlqF [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 296
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 142/341 (41%), Gaps = 74/341 (21%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I ++LK VDIV EV D+R+P + RN + V +P ++VLN+ D + L +
Sbjct: 17 IAENLKYVDIVAEVIDARIPVSSRNPDIDTLVGE-KPRLIVLNRADQADPAGNRLWGDWF 75
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTVMVVGVPNVG 126
R S V+ T+ + KG+ + P ++ + D + ++
Sbjct: 76 R---SRGWSVLETDAKE--GKGINQFSPVVKEVLKDKIQQWQ-----------------A 113
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
K + +R+ M+VGVPNVGKS+ IN
Sbjct: 114 KGQVGRPIRA-----------------------------------MIVGVPNVGKSTFIN 138
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
+ + K+ K GVTR + ++ + +LDTPGI P+ ++ + G+ LA
Sbjct: 139 -----KVARRKSAKASDKPGVTRG---KQWVAVDAGLDLLDTPGILWPKFEDPQTGLHLA 190
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP---SDDIVMLLAKAAIKKKW 303
++D ++ +A ++L L + + + P ++ + A +++
Sbjct: 191 FTGAVKDEIMDTETLACHLLEELAAAYPAALTERYKIAVPERSEEEEGLAYGYALLEQAA 250
Query: 304 FKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR F +S PDT + ++ ++ FR G G L++
Sbjct: 251 RKRGFLISGGE----PDTERMGKVLLDEFRAGKLGRFTLEK 287
>gi|357637618|ref|ZP_09135493.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
gi|357586072|gb|EHJ53275.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus macacae
NCTC 11558]
Length = 283
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 148/347 (42%), Gaps = 85/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+++LK +D V + D+R+P + +N +L + V + + +LVLNK DL + +
Sbjct: 11 MSKARRQIQENLKYIDFVTILADARLPLSSQNPMLNKIVGD-KSKLLVLNKADLADKQET 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +KE + + N +GV ++ I+
Sbjct: 70 AKWCAYYKKEGLKVLAI------NAKEQGV------IKQIN------------------- 98
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G + + + + H+ K + I NM R M++G+PNVG
Sbjct: 99 -----GAAKALMSAKFEHLHK----------KGIQSNMMR----------TMIIGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K G+T+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIASVGNKPGITKG---QQWLKTNKDLEILDTPGILWPKFEDQF 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKA 297
G++LA ++D+++ + + L Y + R ++FN L E + +I+M +
Sbjct: 186 VGLKLALTGAIKDNILPMDEVTIFGLNYFKKHYPERLQEYFNGIDLSEEAPEIIMNMT-- 243
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K F+ +D R + FI+ R G G LD+
Sbjct: 244 --QKLGFRDDYD------RFY-------SFFIKAVRNGKLGPYTLDK 275
>gi|218249555|ref|YP_002375144.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
ZS7]
gi|218164743|gb|ACK74804.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
ZS7]
Length = 279
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 79 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|169827105|ref|YP_001697263.1| hypothetical protein Bsph_1533 [Lysinibacillus sphaericus C3-41]
gi|168991593|gb|ACA39133.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 290
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 84/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDI+ E+ D+R+P + RN ++ + + N +P +LVLNK D+ +
Sbjct: 10 MAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVI-NQKPRLLVLNKADMAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E++ RK + ++ R H+ N+ +
Sbjct: 65 ---EQETRKWVEYFAQ-----------------------------RGHKAVAINS-LEGK 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ V K++ + + KA + P R R M+VG+PNVG
Sbjct: 92 GLQQVTKAA--QEILKEKFDRMKAKGMKP----------RAIRA-------MIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K P GVT++ +K+ ++ + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIAKTGNTP-----GVTKA-QQWIKVGKE--LELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D + ++A Y L +L+ R + + +D+V
Sbjct: 185 VGFKLALTGAIKDTITNMEDLAVYGLRFLSVHYPKRMEERYGFGFIHEDLV--------- 235
Query: 301 KKWFKRAFDVSSNSVRMFPDTGE-----VARIFIEHFRKGSFGSVMLD 343
FD R+F GE VA++ + R G + D
Sbjct: 236 -----ETFDHIGKLRRVFGAGGEIDYDQVAQLIVRDIRGLQLGKLTFD 278
>gi|160915180|ref|ZP_02077393.1| hypothetical protein EUBDOL_01188 [Eubacterium dolichum DSM 3991]
gi|158432979|gb|EDP11268.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium dolichum
DSM 3991]
Length = 292
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 145/344 (42%), Gaps = 77/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK VD VIE+ D+R+P RN +L + + +P +++L+KRD
Sbjct: 18 MTKAKREMQEKLKMVDFVIELRDARIPNASRNPMLDELCKQ-KPRLIILSKRD------- 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + S+ + I H+S+ T+ ++ +V +
Sbjct: 70 -------KAQASYTKQWI-------------------AHLSNETTKVLALDILKDSVTQM 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+++A S + K K I + R R MVVGVPNVG
Sbjct: 104 ---------VVDA--SQQLMKAK----------IERMIRRGIRPRAMR--AMVVGVPNVG 140
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ IN + K K G + GVT+++ S+V + +LDTPG+ P+ ++
Sbjct: 141 KSTFIN-----RISKKKIATTGDRPGVTKALQWSRVNKD----LELLDTPGVLWPKFEDE 191
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+ G+ LA ++D ++ IA + + +L + +++ SD ML A A
Sbjct: 192 QVGLLLAVTGAIRDEVLPIDEIALWAMRWLLENHSEALTKRYDIPLKSDPYTMLEAIA-- 249
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+KR F + V D F+ R GS+ +
Sbjct: 250 ----WKRGFLKNGQEV----DWKRTIETFLREIRDDRLGSITWE 285
>gi|390599054|gb|EIN08451.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 468
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMK--KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
V+VVG+PNVGKSS++NALR+ ++ KA G+T+++ ++V++SE PLIY D+
Sbjct: 174 VLVVGMPNVGKSSLLNALRNIGIRGPTPKAFQTSVNPGLTQALSTRVRLSESPLIYAYDS 233
Query: 229 PGISLPRID----NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL- 283
PG+ LP + E G++ A A +++ L ++A Y+L+ LN N + L
Sbjct: 234 PGVMLPYLGKGDRGAERGVKFALIAGIKEGLYDAKSLAAYLLYRLN-VLNPIAPAYLTLL 292
Query: 284 ---DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKG 335
P++D++ L + A + + KR + D A FI +R G
Sbjct: 293 PPSTPPTNDVLQFLEQLADRLRMLKRGGEK---------DVHRAATWFINWWRDG 338
>gi|49483406|ref|YP_040630.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425297|ref|ZP_05601722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427957|ref|ZP_05604355.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430590|ref|ZP_05606972.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433351|ref|ZP_05609709.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436193|ref|ZP_05612240.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282903798|ref|ZP_06311686.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|282905561|ref|ZP_06313416.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908536|ref|ZP_06316366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910815|ref|ZP_06318618.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914020|ref|ZP_06321807.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282924065|ref|ZP_06331741.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|283770306|ref|ZP_06343198.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283957986|ref|ZP_06375437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501051|ref|ZP_06666902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510013|ref|ZP_06668721.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|293526600|ref|ZP_06671285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|295427730|ref|ZP_06820362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591312|ref|ZP_06949950.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|379020952|ref|YP_005297614.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|384547487|ref|YP_005736740.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|384867874|ref|YP_005748070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830778|ref|YP_006237432.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387780352|ref|YP_005755150.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415683834|ref|ZP_11449036.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|416839290|ref|ZP_11902684.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|416847454|ref|ZP_11907176.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|417653182|ref|ZP_12302916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|417797222|ref|ZP_12444420.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|417797958|ref|ZP_12445144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|417887003|ref|ZP_12531142.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|417903355|ref|ZP_12547202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|418283063|ref|ZP_12895820.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|418312742|ref|ZP_12924251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|418561434|ref|ZP_13125925.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|418566592|ref|ZP_13130965.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|418582077|ref|ZP_13146155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597655|ref|ZP_13161177.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|418603088|ref|ZP_13166479.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|418655687|ref|ZP_13217531.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|418891876|ref|ZP_13445991.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897780|ref|ZP_13451850.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900650|ref|ZP_13454707.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908954|ref|ZP_13462957.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917038|ref|ZP_13470997.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922825|ref|ZP_13476742.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418950552|ref|ZP_13502716.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|418982156|ref|ZP_13529864.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985824|ref|ZP_13533510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241535|emb|CAG40221.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271754|gb|EEV03892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274798|gb|EEV06285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278718|gb|EEV09337.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281444|gb|EEV11581.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284475|gb|EEV14595.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282314037|gb|EFB44429.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|282322088|gb|EFB52412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282325420|gb|EFB55729.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327598|gb|EFB57881.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330853|gb|EFB60367.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595416|gb|EFC00380.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|283460453|gb|EFC07543.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283790135|gb|EFC28952.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920672|gb|EFD97735.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|291096056|gb|EFE26317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466957|gb|EFF09475.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|295128088|gb|EFG57722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576198|gb|EFH94914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|298694536|gb|ADI97758.1| probable GTP-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|312438379|gb|ADQ77450.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194132|gb|EFU24525.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|323441021|gb|EGA98728.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|323442338|gb|EGA99968.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|329733564|gb|EGG69892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|334267270|gb|EGL85734.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|334277080|gb|EGL95319.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|341849976|gb|EGS91109.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|341858425|gb|EGS99215.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|344177454|emb|CCC87922.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830261|gb|AEV78239.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|365168660|gb|EHM59998.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|365238387|gb|EHM79224.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|371969862|gb|EHO87300.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|371977645|gb|EHO94909.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|374393717|gb|EHQ65021.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|374393817|gb|EHQ65120.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|375035925|gb|EHS29019.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|375376724|gb|EHS80243.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|377703118|gb|EHT27434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704437|gb|EHT28746.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705642|gb|EHT29946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710487|gb|EHT34725.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731208|gb|EHT55265.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736148|gb|EHT60178.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750212|gb|EHT74150.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377753992|gb|EHT77902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760815|gb|EHT84691.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|385196170|emb|CCG15791.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 294
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|367042286|ref|XP_003651523.1| hypothetical protein THITE_13135, partial [Thielavia terrestris
NRRL 8126]
gi|346998785|gb|AEO65187.1| hypothetical protein THITE_13135, partial [Thielavia terrestris
NRRL 8126]
Length = 378
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 76/321 (23%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GL + + L N+ ++IE D R+P T N LL+ R L + + S
Sbjct: 25 GLARMRQTLSNIGLIIECRDFRVPLTSWNPLLE---------------RSLAAAANPS-- 67
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E++ I +++T+ + + + + +H + V+ G
Sbjct: 68 ------ERARI--IVYTH------RDLAPSTRAAATAAARLRDFHLAHRHAAAVLFTGAG 113
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
SH + + +L ++H++ R + T +VVG+PN GKS+
Sbjct: 114 ------------PSHARATR--DLLDAIKHVA-----RARDALTGTRALVVGMPNAGKST 154
Query: 184 IINALR-----SSHMKKGKAVPVGPKAGVTRSVMSQVKI-----SEK------PLIYILD 227
++NALR S+ K K G GVTR + S V+I SE+ ++++D
Sbjct: 155 VLNALRRRASTSTSKKVAKVARTGANPGVTRRLSSPVRIVGPEGSEEGDAGVGEGVFLVD 214
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN----------RTGNYRY 277
TPG+ +P + + E ++LA ++D +V + +ADY+LF LN Y
Sbjct: 215 TPGVFVPYVSDPERMLKLALVGCVKDGVVPKETLADYLLFRLNLAAAAGAGGCADDGSAY 274
Query: 278 VDFFNLDEPSDDIVMLLAKAA 298
V +D P++D+ L A
Sbjct: 275 VSRLGMDGPTNDVGEFLEAVA 295
>gi|340056228|emb|CCC50558.1| putative GTP-binding protein [Trypanosoma vivax Y486]
Length = 468
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 146/353 (41%), Gaps = 86/353 (24%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ + + +K+ D V+E+ D+R+PFT N L + + RP ++V NK ++ N I++
Sbjct: 80 RALAEKVKDSDFVLEIRDARLPFTTENPNLNKIIAG-RPRLIVFNKAEMSNEDCNRTIQQ 138
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV---MVVGV 122
+ S +FT+ + V+ + + HI + + TT +VVG+
Sbjct: 139 FYERTGSF---ALFTSAKRSWRDTVEAVQRFVTHILP-------PQKFKTTAHVGLVVGM 188
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
PNVGKS++IN+LR +H + +HR +
Sbjct: 189 PNVGKSTLINSLRLAHEYQ-------------------FHREDFRRP------------- 216
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
+ +AV + P G TR V V + + P I + D+PG++LP + E G
Sbjct: 217 -----------RTPEAVSITP--GTTRGV-KLVPVCKDPNIVLYDSPGLTLPGCFSKEAG 262
Query: 243 MRLAACA-------TLQDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDEPS---DDIV 291
++LAAC TLQ LV A Y+ L G ++ + +L DD +
Sbjct: 263 LKLAACGIIPTNDITLQRSLV-----ARYVYDVLTAAGASEHMAECLHLPRAPISFDDCI 317
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
++ + + S + D R I F+ G+ G V LDR
Sbjct: 318 AMICERS----------GTSGQTELGSLDPVRAQRFLIHDFQMGNMGRVTLDR 360
>gi|282918942|ref|ZP_06326677.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
gi|282316752|gb|EFB47126.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
Length = 294
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|15594988|ref|NP_212777.1| GTPase YlqF [Borrelia burgdorferi B31]
gi|216264619|ref|ZP_03436611.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
156a]
gi|221217948|ref|ZP_03589415.1| GTP-binding protein [Borrelia burgdorferi 72a]
gi|223889457|ref|ZP_03624043.1| GTP-binding protein [Borrelia burgdorferi 64b]
gi|225548890|ref|ZP_03769867.1| GTP-binding protein [Borrelia burgdorferi 94a]
gi|225549956|ref|ZP_03770917.1| GTP-binding protein [Borrelia burgdorferi 118a]
gi|226320358|ref|ZP_03795927.1| GTP-binding protein [Borrelia burgdorferi 29805]
gi|226321341|ref|ZP_03796868.1| GTP-binding protein [Borrelia burgdorferi Bol26]
gi|387827543|ref|YP_005806825.1| GTP-binding protein [Borrelia burgdorferi N40]
gi|2688581|gb|AAC67000.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
B31]
gi|215981092|gb|EEC21899.1| ribosome biogenesis GTP-binding protein YlqF [Borrelia burgdorferi
156a]
gi|221192254|gb|EEE18474.1| GTP-binding protein [Borrelia burgdorferi 72a]
gi|223885143|gb|EEF56247.1| GTP-binding protein [Borrelia burgdorferi 64b]
gi|225369415|gb|EEG98867.1| GTP-binding protein [Borrelia burgdorferi 118a]
gi|225370493|gb|EEG99929.1| GTP-binding protein [Borrelia burgdorferi 94a]
gi|226233137|gb|EEH31889.1| GTP-binding protein [Borrelia burgdorferi Bol26]
gi|226234221|gb|EEH32933.1| GTP-binding protein [Borrelia burgdorferi 29805]
gi|312149531|gb|ADQ29602.1| GTP-binding protein [Borrelia burgdorferi N40]
Length = 279
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 83/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ +N + +++L+K D+
Sbjct: 12 MKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKN-QAKIILLHKSDV------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+E+I +Y
Sbjct: 65 -----------AQINEII------------------------KWKKYFE----------- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+G + II+ + M+K + + I+ L I + Y V+++GVPNVG
Sbjct: 79 ---NLGNTVIISNIYKKGMRK-QIIDIIKKLA-IVKKIKNYKEK----IKVLIIGVPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 130 KSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLVDQS 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAI 299
+LA +++ +V ++A Y+L +++ + + + + S DI+ AKA
Sbjct: 182 IAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA-- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 ------RKLIGKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|334135573|ref|ZP_08509057.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
gi|333606909|gb|EGL18239.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
Length = 290
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 80/349 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R + IE LK +D+ IE+ D+R+P + RN ++ ++ +P +++LNK DL +
Sbjct: 10 MTRARRQIEDKLKLIDVAIELLDARIPMSSRNPMVDDILKG-KPRLVLLNKADLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ E V+ + + + + GV++ILP + +
Sbjct: 66 AITAEWVKYFTDQGLKALPIDASS--GTGVKEILPRCKEL-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++A + ++KG I+ R ++VG+PNVG
Sbjct: 104 ----------MSAKIETQLRKG-----------INPRAIRG----------LIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L K G K GVT+ Q I + +LDTPGI P+ D+
Sbjct: 133 KSTLINQLAGR-----KIANTGDKPGVTKG---QQWIKFGTDMDLLDTPGILWPKFDDQN 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSD-----DIVMLL 294
GM+LAA +++ ++ +IA + + Y+ R + + ++E P+D +++ ++
Sbjct: 185 VGMKLAATGAIKEEILHLDDIAFHTIRYMTEYYGERLKERYGIEELPADSENPNEVIEVM 244
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR +S V D + + +F+ R G G V L+
Sbjct: 245 ETIG-----RKRGAIISGGRV----DLDKTSLLFLRELRSGKLGRVSLE 284
>gi|395240791|ref|ZP_10417815.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394475573|emb|CCI87792.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 279
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 145/355 (40%), Gaps = 98/355 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D+++EV D+R+P RN ++ + V +P +++LNK DL +
Sbjct: 11 MNKARNQLEDKLNLIDVIVEVLDARIPQASRNPMIGELVGQ-KPHIVILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P L T++ + E+ T V+
Sbjct: 66 ----------------------------------PVL-------TKFWQKELQKTANYVI 84
Query: 121 GVP---NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV--G 175
+ N +I+ ++ + K K ++ N T+ + G
Sbjct: 85 AMDSLHNTNMQGLIHLIKKAGSAKTK----------------KFEDKGAVNPTIRIAFAG 128
Query: 176 VPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
+PN GKS+IIN L ++ + VG K GVT+ Q + K I ILDTPGI P+
Sbjct: 129 IPNCGKSTIINRLVGRNVAE-----VGNKPGVTKG---QTWLKTKSNIQILDTPGILWPK 180
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSD-D 289
D+ + G +LAA ++D + ++A ++L +YLN + + L++ S+ D
Sbjct: 181 FDDQQVGYKLAAFGAIKDTVFHADDVALFVLELLRKYYLNDLIKFARSNKEELEQISNPD 240
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+++ L ++ M D + ++ RKG G V LDR
Sbjct: 241 LLLAL-----------------TDIYGMRDDYDRFSLYMLQRLRKGKLGRVTLDR 278
>gi|343515074|ref|ZP_08752134.1| ribosomal biogenesis GTPase [Vibrio sp. N418]
gi|342798885|gb|EGU34478.1| ribosomal biogenesis GTPase [Vibrio sp. N418]
Length = 311
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISE-LRGDKPVVKVLNKRDLADPEMT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + VQKIL + ++ HR E+ N M+
Sbjct: 69 QLWIEHLEKEQNVKAMAITTS----QPQEVQKILELCRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN+L
Sbjct: 120 MGIPNVGKSTIINSL 134
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN+L G+ + + G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINSL------AGRTIAITGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 158 QNGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPEKLKE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 218 RYQIEELPESDVELMEEIGRRRGALRSGGRV---------DLHKASEILLHELRSGTLGQ 268
Query: 340 VMLDR 344
V L+R
Sbjct: 269 VTLER 273
>gi|145298535|ref|YP_001141376.1| ribosomal biogenesis GTPase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362735|ref|ZP_12963360.1| GTPase YlqF [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142851307|gb|ABO89628.1| conserved GTP-binding protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686046|gb|EHI50658.1| GTPase YlqF [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 316
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I AL +HM+K K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITALWVAHMEKEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNLELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVVLTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + + E + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERIKARYQIAELPETEIELLEMIARQ 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + ++ D + + I I FR G G + L+
Sbjct: 239 RAFVRKGG---------LADLHKASEILINEFRSGLLGRISLE 272
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL + +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L + KE+ I + T K L TL H M E+ M++
Sbjct: 69 ALWVAHMEKEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNLELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|384550000|ref|YP_005739252.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302332849|gb|ADL23042.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 294
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKSTAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKIEVPEDAEIIAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|365841786|ref|ZP_09382840.1| ribosome biogenesis GTP-binding protein YlqF [Flavonifractor
plautii ATCC 29863]
gi|364576938|gb|EHM54233.1| ribosome biogenesis GTP-binding protein YlqF [Flavonifractor
plautii ATCC 29863]
Length = 285
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 145/346 (41%), Gaps = 89/346 (25%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ I+ LK VD+V E+ D+R+P + RN + + V +P ++VLN
Sbjct: 6 RQIQADLKLVDLVAEIIDARIPISSRNPDIDELVGE-KPRLIVLN--------------- 49
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
R +Q+ P + + T + R + +
Sbjct: 50 --RADQAD---------------------PAMNRV---WTDWFRRQGW------------ 71
Query: 126 GKSSIINALRSSHMKKGKAVPILPTL--QHISDNMTRYHRTEVYNTTV--MVVGVPNVGK 181
A+ ++ + GK V T+ Q + + + ++ + V MVVGVPNVGK
Sbjct: 72 -------AVLETNARDGKGVGQFSTVIRQALKEKLEQWKAKGLVGRPVRAMVVGVPNVGK 124
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
S+ IN + K K+ G + GVTR + +S + +LDTPGI P+ ++
Sbjct: 125 STFIN-----QVAKRKSAKAGNRPGVTR---GKQWVSVDAGLELLDTPGILWPKFEDETT 176
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKA 297
G+ LA ++D ++ +A +++ L R + + L+ P +++ L K
Sbjct: 177 GIHLAFTGAVKDEIMDLETLACHLIELLARRYPQALAERYKLEADPGLPGWELLELCGK- 235
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR F +S V DT +A++ ++ +R G G++ +
Sbjct: 236 -------KRGFRISGGEV----DTERMAKVLLDEYRSGKLGNLTFE 270
>gi|78485398|ref|YP_391323.1| ribosomal biogenesis GTPase [Thiomicrospira crunogena XCL-2]
gi|78363684|gb|ABB41649.1| Ras superfamily GTP-binding protein YlqF [Thiomicrospira crunogena
XCL-2]
Length = 315
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 154/354 (43%), Gaps = 87/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + L VD++IEV D+R+PF+ N ++ +++ +P + + NK DL +
Sbjct: 10 MHKAQKEIREILPQVDMIIEVLDARIPFSSENPMIA-NLRGDKPTLKIFNKSDLADPA-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
Q+ + F +N ++ ++ N + R + V+
Sbjct: 67 ----------QTEAWQAYFEQSKN------------IKTLALNAQQADRK------IQVL 98
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ ++ +K ++V ++ L ++G+PNVG
Sbjct: 99 GI-----------IKKMIPRKAESVKVIHAL---------------------IMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L S + K G + VT+ ++ ++K+ + I + D+PG+ P I+N
Sbjct: 127 KSTLINTLASRPIAK-----TGNEPAVTK-ILQRIKLEDG--ITLFDSPGMLWPNIENEH 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-----EPSDDIVMLLA 295
G RLA +++ +IA Y YL + R ++ ++LD +P+ D+ L
Sbjct: 179 SGYRLAITGGIKETAFELPDIASYAAEYLMQAYPERLLERYDLDALPIHDPAPDVAFL-- 236
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR-DFLE 348
++ R VS V + +++RIFI R G G + + D +E
Sbjct: 237 ----EQIGRTRGCLVSGGQVNL----DKISRIFITEIRDGLLGRLTFETPDLME 282
>gi|390934868|ref|YP_006392373.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570369|gb|AFK86774.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 278
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 78/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + IE++LK VD+V E+ D+R+P + RN L+ LV NK+ +I
Sbjct: 9 MAKTKRLIEENLKIVDVVYELLDARIPKSSRNPLIDD---------LVKNKKRIILLNKS 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +V K + N KG H+S N
Sbjct: 60 DLADLEVNKMWNDYF----------NLKG---------HVSLN----------------- 83
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV-YNTTVMVVGVPNV 179
IN+L S ++ + TL+ SD + + + + M+VG+PNV
Sbjct: 84 ----------INSLDSRCIQSIYEL----TLKECSDIIDKKRQKGIKAKLRAMIVGIPNV 129
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN+L K K G K GVT+S + + P +LDTPGI P+ ++
Sbjct: 130 GKSTLINSLT-----KTKNAKTGNKPGVTKSK----QWIKTPYFDLLDTPGILWPKFEDE 180
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G+ LA + ++D L+ +A +L L + + L++ D+ LL
Sbjct: 181 HVGIMLALTSAIKDELLNHEELAYSLLDILKINYPELLMKRYKLEDIGKDVFKLLTDIG- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K +SS + DT A+I I+ FR G G + L+R
Sbjct: 240 -----KSRGCLSSGGI---VDTERAAKIIIDDFRAGKIGKISLER 276
>gi|387786219|ref|YP_006251315.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449976138|ref|ZP_21816116.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|450098219|ref|ZP_21857901.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|450171566|ref|ZP_21884063.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
gi|379132620|dbj|BAL69372.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449175866|gb|EMB78242.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|449221787|gb|EMC21544.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|449243888|gb|EMC42289.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
Length = 283
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIGLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|449921541|ref|ZP_21798976.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
gi|449156980|gb|EMB60434.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
Length = 283
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 150/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLEHYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ +K F+ +D R + ++FI+ R G G LDR
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR 275
>gi|343512416|ref|ZP_08749545.1| ribosomal biogenesis GTPase [Vibrio scophthalmi LMG 19158]
gi|342795394|gb|EGU31124.1| ribosomal biogenesis GTPase [Vibrio scophthalmi LMG 19158]
Length = 314
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISE-LRGDKPVVKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + VQKIL + ++ HR E+ N M+
Sbjct: 72 QLWIEHLEKEQNVKAMAITTS----QPQEVQKILELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN+L
Sbjct: 123 MGIPNVGKSTIINSL 137
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN+L G+ + + G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINSL------AGRTIAITGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 161 QNGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPEKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 221 RYQIEELPESDVELMEEIGRRRGALRSGGRV---------DLHKASEILLHELRSGTLGQ 271
Query: 340 VMLDR 344
V L+R
Sbjct: 272 VTLER 276
>gi|374296156|ref|YP_005046347.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
gi|359825650|gb|AEV68423.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
Length = 290
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 149/347 (42%), Gaps = 79/347 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + +++K VD+VIE+ D+R+P + +N +N +P ++VLNK DL +
Sbjct: 10 MAKTRRILAENIKLVDVVIELLDARIPISSKNPDFDDIFKN-KPKIIVLNKSDLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ IS + ++++ ++ Y + +
Sbjct: 65 -------------------------------------EKISSSWSKWYNSKGY-ANIFID 86
Query: 121 GVPNVGKSSIINALRS--SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ K IN L++ + K K + ++R RT M+VG+PN
Sbjct: 87 SI----KGKNINLLKNKMQDLMKDKI-----ERDKLKGRISRPIRT-------MIVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKSS+IN + G+A V G + GVTR + +++K I +LDTPGI P+ +
Sbjct: 131 VGKSSLINKI------AGRASAVTGDRPGVTRG-KQWINVNDK--IQLLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
N E G+ LA ++D ++ + +A + L R ++ + L L +
Sbjct: 182 NPEVGINLAITGAIKDDVIDTVELASILFEKLARLYPKNLMERYKLTSIEGKTGFELLQI 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A K R +S + M +A I ++ R G G + L++
Sbjct: 242 AGK----NRGCIISGGEIDML----RIASIVLDELRGGKIGKITLEK 280
>gi|424043235|ref|ZP_17780875.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-03]
gi|408889367|gb|EKM27786.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-03]
Length = 314
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 28/200 (14%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 220
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +DE P DI M+ ++ +R + V D +V+ I + R+G+ G
Sbjct: 221 RYQIDELPQSDIEMM------EEIGRRRGALRAGGRV----DLHKVSEILLHELRQGTLG 270
Query: 339 SV------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 271 QITLELPEMITQELIEVEIE 290
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + + T + V KI+ ++ ++ HR E+ N M+
Sbjct: 72 QVWIDHFEKEHN-VKAIAITTSQQAE---VLKIMELVRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 123 MGIPNVGKSTIINAL 137
>gi|320158367|ref|YP_004190745.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio vulnificus
MO6-24/O]
gi|319933679|gb|ADV88542.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio vulnificus
MO6-24/O]
Length = 302
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+
Sbjct: 98 HREEVGKNIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINL 148
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 149 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKE 208
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 209 RYQIEELPETDVELMEEIGQRRGALRSGGRV---------DLHKASEILLHELRSGTLGQ 259
Query: 340 VMLDR 344
+ L+R
Sbjct: 260 ITLER 264
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N L+ + ++ +P+V VLNKRDL + +
Sbjct: 1 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPLISK-IRGEKPVVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + V KIL + ++ HR EV N M+
Sbjct: 60 ELWIEHLEKEQNVKAMAITTS----QTQEVHKILELCRKLAP-----HREEVGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
>gi|254506641|ref|ZP_05118782.1| GTP-binding protein [Vibrio parahaemolyticus 16]
gi|219550514|gb|EED27498.1| GTP-binding protein [Vibrio parahaemolyticus 16]
Length = 311
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPERLQE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +++ + + L+ + K+ + V D + + I + R G+ G
Sbjct: 218 RYQIEDLPESDIELMEEIGRKRGALRAGGRV---------DLHKCSEILLHELRGGTLGQ 268
Query: 340 VMLDR 344
+ L+R
Sbjct: 269 ITLER 273
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KE + + + T + V KI+ ++ ++ HR E+ N M+
Sbjct: 69 QLWIDHFEKEHN-VKAIAITTSQQAE---VNKIMELVRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 120 MGIPNVGKSTIINAL 134
>gi|342732353|ref|YP_004771192.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|418016245|ref|ZP_12655810.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|342329808|dbj|BAK56450.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506580|gb|EGX28874.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
Length = 289
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 91/352 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I+ + VD+VIE+ D+R + N ++ ++ +P ++VL+K DL
Sbjct: 13 MFKTKKEIKNMINLVDLVIEIRDARSVISTTNPDIEMLTKD-KPKIIVLSKVDL------ 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+DN T E Y
Sbjct: 66 ----------------------------------------ADNNTTNKWIEYYKNQ---- 81
Query: 121 GVPNVGKSSIINALRSSHMKKGKA-VPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
G+P + ++ +R+ ++K KA + L + + RY V N T+ M++G+P
Sbjct: 82 GIPCID----VDIIRNKNIKNIKAQINFL-----MKSKLDRYRSKGVKNYTLRGMILGIP 132
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS+IN + ++ + K VG + GVT+S I K I +LDTPGI P+ D
Sbjct: 133 NVGKSSLINKISNNKIAK-----VGNRPGVTKS---NQWIKTKWDIDLLDTPGILWPKFD 184
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-----EPSDDIVM 292
+ E G+ L +++D ++ ++ +L YL + NYR NL+ E SDD+
Sbjct: 185 STEVGLNLVYIGSVKDEILDVQDVCYNMLEYLLK--NYR----MNLESKYKVEVSDDVSD 238
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ K + + D +A I I FR G G++ L+R
Sbjct: 239 SMDILGKKLGCLSKGVSI---------DYNRLAHIIIGDFRSGKIGNISLER 281
>gi|339624739|ref|ZP_08660528.1| GTP-binding protein YlqF [Fructobacillus fructosus KCTC 3544]
Length = 281
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 145/348 (41%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++L VDIV E+ D+R+P + RN + + ++ +P +LVL K DL + K
Sbjct: 12 MAKAFRLMRENLSLVDIVFELVDARLPLSSRNPEVDKLIEK-KPRLLVLTKADLADPKET 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S K E+ ++ V+ + R P V MT+
Sbjct: 71 S--AWKAYFERQGLA-VVVLDTRGPKTAQV-------------MTK-------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K + L + K K PI VM+ G+PNVG
Sbjct: 101 ----AAKQVLKEQLAAQEAKGIKNRPI----------------------RVMLAGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ + K GVT+ V + +K + + ILD+PG+ P+ ++ +
Sbjct: 135 KSTLLN-----HLVQKNVAITANKPGVTKKV-AWLKTATG--LEILDSPGVLWPKFEDQK 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS---DDIVMLLAKA 297
G RLA ++D + + + A +L Y +D ++L+ + D+ +LL
Sbjct: 187 IGQRLALTGAVKDTIFAKDDAALSMLAYFRNYNQQAIIDRYHLNADAFDLSDVDLLL--T 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
+K FK +D + +VRM D R G G LDR+
Sbjct: 245 ITEKLGFKDDYDKA--AVRMLND-----------LRSGKLGRYTLDRE 279
>gi|28971414|emb|CAD70603.1| hypothetical protein [Bacillus megaterium]
Length = 361
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 136/295 (46%), Gaps = 66/295 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D + +
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVN-KPRIVLLNKVDKADPRVT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ ++ KEQ + I KG+++I+ + + + ++ R
Sbjct: 69 QQWLD--YYKEQGIYALAIDAQA----GKGMKQIVSSSKELLQE--KFDR---------- 110
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+R+ +KK +A+ M+VG+PNV
Sbjct: 111 --------------MRAKGVKKPRAI------------------------RAMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L S + K G + GVT++ +K+ + + +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLASKKIAK-----TGDRPGVTQA-QQWIKVGNE--LELLDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G +LA ++D ++ ++A Y L +L + +NL+E +DIV L
Sbjct: 185 TVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQRYNLNEIPEDIVELF 239
>gi|224476369|ref|YP_002633975.1| ribosomal biogenesis GTPase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420976|emb|CAL27790.1| putative GTPase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 289
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 141/348 (40%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + +QN +P V++LNK
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNSMIDEVIQN-KPRVVILNK--------- 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K+ +++SE+ Y R++ Y
Sbjct: 60 --------KDMANLSEI------------------------SKWKDYFRSKGYYPVA--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++A +K+ + I T + + + + M+VG+PNVG
Sbjct: 85 ----------VDAKHGKGLKQVEQAAIEATKEKFERDKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + K P GVT+ +K+ + + +LDTPGI P+ ++
Sbjct: 133 KSTLINKLANKAIAKTGNTP-----GVTKQ-QQWIKVGKS--LQLLDTPGILWPKFEDQT 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V ++A Y L + FN+D +D A
Sbjct: 185 VGKKLSLTGAIKDSIVHLDDVAIYGLDFFKEHDVEALQKNFNVDVDAD---------AEN 235
Query: 301 KKWF-----KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+WF +R N V D V + I R G G+ D
Sbjct: 236 MEWFDAIGRRRGALQRGNEV----DYEAVIEMIINDIRNGKLGTHSFD 279
>gi|37676238|ref|NP_936634.1| ribosomal biogenesis GTPase [Vibrio vulnificus YJ016]
gi|37200779|dbj|BAC96604.1| predicted GTPase [Vibrio vulnificus YJ016]
Length = 339
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+
Sbjct: 135 HREEVGKNIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINL 185
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 186 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKE 245
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 246 RYQIEELPETDVELMEEIGQRRGALRSGGRV---------DLHKASEILLHELRSGTLGQ 296
Query: 340 VMLDR 344
+ L+R
Sbjct: 297 ITLER 301
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N L+ + ++ +P+V VLNKRDL + +
Sbjct: 38 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPLISK-IRGEKPVVKVLNKRDLADPELT 96
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + V KIL + ++ HR EV N M+
Sbjct: 97 ELWIEHLEKEQNVKAMAITTS----QTQEVHKILELCRKLAP-----HREEVGKNIRTMI 147
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 148 MGIPNVGKSTIINTL 162
>gi|384422850|ref|YP_005632209.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
LMA3984-4]
gi|327485558|gb|AEA79964.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
LMA3984-4]
Length = 314
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWITHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|27366530|ref|NP_762057.1| GTPase YlqF [Vibrio vulnificus CMCP6]
gi|27358096|gb|AAO07047.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio vulnificus
CMCP6]
Length = 314
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+
Sbjct: 110 HREEVGKNIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 221 RYQIEELPETDVELMEEIGQRRGALRSGGRV---------DLHKASEILLHELRSGTLGQ 271
Query: 340 VMLDR 344
+ L+R
Sbjct: 272 ITLER 276
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N L+ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPLISK-IRGEKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + V KIL + ++ HR EV N M+
Sbjct: 72 ELWIEHLEKEQNVKAMAITTS----QTQEVHKILELCRKLAP-----HREEVGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|422922068|ref|ZP_16955265.1| hypothetical protein VCBJG01_0819 [Vibrio cholerae BJG-01]
gi|341647068|gb|EGS71163.1| hypothetical protein VCBJG01_0819 [Vibrio cholerae BJG-01]
Length = 314
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+P++ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPYSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|367008562|ref|XP_003678782.1| hypothetical protein TDEL_0A02390 [Torulaspora delbrueckii]
gi|359746439|emb|CCE89571.1| hypothetical protein TDEL_0A02390 [Torulaspora delbrueckii]
Length = 339
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 81/310 (26%)
Query: 2 GRGLKDIEKH---LKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS 57
G LK ++K+ +++++E+ D R P + RN L+ Q + I +++ K+DL+
Sbjct: 22 GHQLKALKKYNSLRPQLNLILELRDIRAPLSTRNVLIDQLIDPRIHRRLVIYTKKDLVQH 81
Query: 58 KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
+ L + +TR+H+ E+ +
Sbjct: 82 NDDYL---------------------------------------ERLTRWHQ-EIDEDFI 101
Query: 118 MVVG-----VPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
++ G V NV K I + + +P LPT V+
Sbjct: 102 LINGKQRQTVKNVLKC--IKWYKKQLESRNNGLP-LPT-----------------GYKVL 141
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
V G+PNVGKS++IN+L++S K + G +AG+TRS ++I+++ IY++DTPGI
Sbjct: 142 VTGMPNVGKSTLINSLKASRKKVART---GAEAGITRSTSECIRITDEDNIYLIDTPGIG 198
Query: 233 LP-RIDNLECGM-RLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFFNLDEPSDD 289
LP R+ M L+ C ++ +L+ + ADY+L+ +N + G F P++D
Sbjct: 199 LPGRLHGATHRMLTLSLCGCVKSNLIDPVIQADYLLYLMNLQEGR------FYPGAPTND 252
Query: 290 IVMLLAKAAI 299
I LL + I
Sbjct: 253 IYKLLNRIRI 262
>gi|342183446|emb|CCC92926.1| putative GTP-binding protein [Trypanosoma congolense IL3000]
Length = 451
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 70/345 (20%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ + + +K+ D V+E+ D+R+PFT N LQ+ + + RP ++V NK +L N I++
Sbjct: 63 RALAEKVKDADFVLEIRDARLPFTTANPNLQKIIVS-RPKLIVFNKAELSNEDCNRAIQQ 121
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+ + +FT+ + + + + +Q ++ R + +VVG+PNV
Sbjct: 122 YYERTGNF---ALFTSAK----RSWRDTVEAVQRFVTHILPAQRFKTTANIGLVVGMPNV 174
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
GKS++IN+LR +H + +HR +
Sbjct: 175 GKSTLINSLRLAHEYQ-------------------FHREDFRRP---------------- 199
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
+ + V + P G TR + V + P I + D+PG++LP E G++L
Sbjct: 200 --------RTPETVSITP--GTTRGI-KLVPVCRDPNIVLYDSPGLTLPGCFAREAGLKL 248
Query: 246 AACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDEPS---DDIVMLLAKAAI 299
AACA + D + +A YI L+ G ++ + +L DD + ++ + +
Sbjct: 249 AACAIIPTNDITLPRSLVARYIYDVLSAAGACEHMAECLHLPRAPISFDDCISMICERS- 307
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
S + + + R I F+ GS G + LDR
Sbjct: 308 ---------GTSGQTDLGNLNPLQAQRFLIHDFQIGSLGRITLDR 343
>gi|260777528|ref|ZP_05886422.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607194|gb|EEX33468.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
coralliilyticus ATCC BAA-450]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISE-IRGEKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E KE + + I T+ N + V KIL + ++ HR E+ N M+
Sbjct: 72 QLWIEHFEKEHNVKAMAITTS----NTQEVNKILELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYEEVAFYTVEYLAKAYPERLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + L+ + ++ + V D + + I + R G+ G
Sbjct: 221 RYQIEEMPESDIELMEEIGRRRGALRSGGRV---------DLHKCSEILLHELRNGTLGQ 271
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 272 ITLELPEMITKELVEVEIE 290
>gi|350270322|ref|YP_004881630.1| putative GTP-binding protein [Oscillibacter valericigenes Sjm18-20]
gi|348595164|dbj|BAK99124.1| putative GTP-binding protein [Oscillibacter valericigenes Sjm18-20]
Length = 293
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 137/337 (40%), Gaps = 75/337 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I LKNVD V E+ D+R+P + RN + + +P ++VLN+ D +
Sbjct: 23 ITDQLKNVDAVCELLDARIPVSSRNPDVDELTAG-KPRLVVLNRADQADPNLTKRWAAFF 81
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
R++ + E C + GV + P +
Sbjct: 82 REKGYAVLE-----CSAKDGSGVDRF-----------------------------PAAVR 107
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
+ + + LR+ +KG+ RT VM++G+PNVGKS+ IN
Sbjct: 108 TLLADKLRA-FAEKGQG-----------------GRT----MRVMILGIPNVGKSTFIN- 144
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
+ K K + GVTR+ V + + + +LDTPGI P+ ++ G+ LA
Sbjct: 145 ----RVAKRKTARTEDRPGVTRA-KQWVPVDQG--LDLLDTPGILWPKFEDQSVGLNLAF 197
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAKAAIKKKWFKR 306
++D ++ +A ++ YL R + + EP D LL KA K+ + R
Sbjct: 198 TGAVRDEVIDLEGLACNLMVYLARQYPAALAERYKFQPEPGDSGYDLLRKAGQKRGFVMR 257
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ DT +A+I ++ FR G G L+
Sbjct: 258 GGEI---------DTERMAKILLDEFRGGKLGRFTLE 285
>gi|229829014|ref|ZP_04455083.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
gi|229792177|gb|EEP28291.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
Length = 281
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+ G+PNVGKS++IN+L A G K GVT+ + I + I +LDTPG
Sbjct: 123 AMIAGIPNVGKSTLINSLAGR-----AAARTGNKPGVTKG---KQWIHLRDNIDLLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G+ LA + DH++ +++ ++ +L D + +DE +D+
Sbjct: 175 ILWPKFEDQETGIHLAMIGAISDHVLQVEDLSLKVIHFLREAYPGVLSDRYAVDEEKEDV 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+L A A KR V N + D + A +F++ FRKG G + ++
Sbjct: 235 DILSAIA------LKRGCLVRGNEI----DYRKTADLFLDEFRKGQLGRISIE 277
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P RN + Q ++ M+L LNK DL + K
Sbjct: 10 MTKAKRQMQEDIKLIDLVIELLDARIPLASRNPEIDQLARDKARMIL-LNKADLSDPKMT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNC-KGVQKILPTLQHISDNMTRYHRTEVYNTTV-- 117
S +E ++ V+ + R+ + K +QK + + R R + N V
Sbjct: 69 SRWKEYFERQG---MTVLALDSRSASLRKPMQKAI--MDATEKKRARDLRRGIKNRPVRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
M+ G+PNVGKS++IN+L
Sbjct: 124 MIAGIPNVGKSTLINSL 140
>gi|15601288|ref|NP_232919.1| ribosomal biogenesis GTPase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121586452|ref|ZP_01676239.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121726199|ref|ZP_01679497.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147672345|ref|YP_001215302.1| ribosomal biogenesis GTPase [Vibrio cholerae O395]
gi|153212448|ref|ZP_01948217.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153819523|ref|ZP_01972190.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153825878|ref|ZP_01978545.1| GTP-binding protein [Vibrio cholerae MZO-2]
gi|153830286|ref|ZP_01982953.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227119971|ref|YP_002821866.1| hypothetical protein VC395_A0796 [Vibrio cholerae O395]
gi|227812097|ref|YP_002812107.1| hypothetical protein VCM66_A0487 [Vibrio cholerae M66-2]
gi|229506301|ref|ZP_04395810.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae BX
330286]
gi|229509579|ref|ZP_04399061.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae B33]
gi|229513302|ref|ZP_04402767.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae TMA
21]
gi|229516600|ref|ZP_04406047.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae RC9]
gi|229523030|ref|ZP_04412442.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae TM
11079-80]
gi|229526833|ref|ZP_04416237.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae bv.
albensis VL426]
gi|229527626|ref|ZP_04417017.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
12129(1)]
gi|229605852|ref|YP_002876556.1| ribosomal biogenesis GTPase [Vibrio cholerae MJ-1236]
gi|254226516|ref|ZP_04920100.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285140|ref|ZP_04960106.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254849689|ref|ZP_05239039.1| ribosomal biogenesis GTPase [Vibrio cholerae MO10]
gi|255746695|ref|ZP_05420642.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholera CIRS
101]
gi|261210252|ref|ZP_05924548.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. RC341]
gi|262151221|ref|ZP_06028358.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae INDRE
91/1]
gi|262169051|ref|ZP_06036744.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae RC27]
gi|262191172|ref|ZP_06049373.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae CT
5369-93]
gi|262403570|ref|ZP_06080128.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. RC586]
gi|297580321|ref|ZP_06942248.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499328|ref|ZP_07009134.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae MAK
757]
gi|360037431|ref|YP_004939193.1| ribosomal biogenesis GTPase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379743957|ref|YP_005335009.1| GTPase YlqF [Vibrio cholerae IEC224]
gi|417817214|ref|ZP_12463844.1| hypothetical protein VCHCUF01_2466 [Vibrio cholerae HCUF01]
gi|417820122|ref|ZP_12466737.1| hypothetical protein VCHE39_1610 [Vibrio cholerae HE39]
gi|417824714|ref|ZP_12471303.1| hypothetical protein VCHE48_2657 [Vibrio cholerae HE48]
gi|418338110|ref|ZP_12947005.1| hypothetical protein VCHC23A1_2468 [Vibrio cholerae HC-23A1]
gi|418346010|ref|ZP_12950785.1| hypothetical protein VCHC28A1_1804 [Vibrio cholerae HC-28A1]
gi|418349781|ref|ZP_12954513.1| hypothetical protein VCHC43A1_2443 [Vibrio cholerae HC-43A1]
gi|419825515|ref|ZP_14349019.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
CP1033(6)]
gi|419828824|ref|ZP_14352315.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-1A2]
gi|419833615|ref|ZP_14357074.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-61A2]
gi|419837212|ref|ZP_14360651.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-46B1]
gi|421317450|ref|ZP_15768020.1| hypothetical protein VCCP10325_2365 [Vibrio cholerae CP1032(5)]
gi|421322660|ref|ZP_15773197.1| hypothetical protein VCCP104114_3649 [Vibrio cholerae CP1041(14)]
gi|421327459|ref|ZP_15777977.1| hypothetical protein VCCP104215_1188 [Vibrio cholerae CP1042(15)]
gi|421331775|ref|ZP_15782255.1| hypothetical protein VCCP104619_1648 [Vibrio cholerae CP1046(19)]
gi|421336195|ref|ZP_15786658.1| hypothetical protein VCCP104821_2368 [Vibrio cholerae CP1048(21)]
gi|421341295|ref|ZP_15791717.1| hypothetical protein VCHC20A2_3622 [Vibrio cholerae HC-20A2]
gi|421343479|ref|ZP_15793883.1| hypothetical protein VCHC43B1_1524 [Vibrio cholerae HC-43B1]
gi|421345175|ref|ZP_15795566.1| hypothetical protein VCHC46A1_3809 [Vibrio cholerae HC-46A1]
gi|421349082|ref|ZP_15799451.1| hypothetical protein VCHE25_0243 [Vibrio cholerae HE-25]
gi|421356038|ref|ZP_15806369.1| hypothetical protein VCHE45_3420 [Vibrio cholerae HE-45]
gi|422891650|ref|ZP_16934022.1| hypothetical protein VCHC40A1_1596 [Vibrio cholerae HC-40A1]
gi|422898427|ref|ZP_16935728.1| hypothetical protein VCHC48A1_3290 [Vibrio cholerae HC-48A1]
gi|422905516|ref|ZP_16940373.1| hypothetical protein VCHC70A1_0532 [Vibrio cholerae HC-70A1]
gi|422908297|ref|ZP_16942997.1| hypothetical protein VCHE09_3351 [Vibrio cholerae HE-09]
gi|422913491|ref|ZP_16948007.1| hypothetical protein VCHFU02_1799 [Vibrio cholerae HFU-02]
gi|422918992|ref|ZP_16953268.1| hypothetical protein VCHC02A1_3281 [Vibrio cholerae HC-02A1]
gi|422927417|ref|ZP_16960363.1| hypothetical protein VCHC38A1_3200 [Vibrio cholerae HC-38A1]
gi|423143787|ref|ZP_17131404.1| hypothetical protein VCHC19A1_0557 [Vibrio cholerae HC-19A1]
gi|423147482|ref|ZP_17134861.1| hypothetical protein VCHC21A1_2980 [Vibrio cholerae HC-21A1]
gi|423151271|ref|ZP_17138503.1| hypothetical protein VCHC22A1_3026 [Vibrio cholerae HC-22A1]
gi|423156600|ref|ZP_17143703.1| hypothetical protein VCHC32A1_1799 [Vibrio cholerae HC-32A1]
gi|423161693|ref|ZP_17148576.1| hypothetical protein VCHC33A2_2999 [Vibrio cholerae HC-33A2]
gi|423164984|ref|ZP_17151733.1| hypothetical protein VCHC48B2_1609 [Vibrio cholerae HC-48B2]
gi|423729900|ref|ZP_17703220.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-17A1]
gi|423736740|ref|ZP_17709860.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-41B1]
gi|423738024|ref|ZP_17710445.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-50A2]
gi|423810255|ref|ZP_17714310.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-55C2]
gi|423844146|ref|ZP_17718044.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-59A1]
gi|423892971|ref|ZP_17726650.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-62A1]
gi|423927666|ref|ZP_17731045.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-77A1]
gi|423939581|ref|ZP_17732644.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HE-40]
gi|423972827|ref|ZP_17736190.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HE-46]
gi|423999569|ref|ZP_17742736.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-02C1]
gi|424002455|ref|ZP_17745538.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-17A2]
gi|424006230|ref|ZP_17749208.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-37A1]
gi|424011066|ref|ZP_17753939.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-44C1]
gi|424021406|ref|ZP_17761162.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-59B1]
gi|424022148|ref|ZP_17761832.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-62B1]
gi|424027097|ref|ZP_17766708.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-69A1]
gi|424588172|ref|ZP_18027670.1| hypothetical protein VCCP10303_3283 [Vibrio cholerae CP1030(3)]
gi|424588920|ref|ZP_18028390.1| hypothetical protein VCCP103710_3380 [Vibrio cholerae CP1037(10)]
gi|424592920|ref|ZP_18032282.1| hypothetical protein VCCP1040_3257 [Vibrio cholerae CP1040(13)]
gi|424596851|ref|ZP_18036071.1| hypothetical protein VCCP104417_3274 [Vibrio Cholerae CP1044(17)]
gi|424604427|ref|ZP_18043416.1| hypothetical protein VCCP1050_3160 [Vibrio cholerae CP1050(23)]
gi|424609347|ref|ZP_18048209.1| hypothetical protein VCHC39A1_0532 [Vibrio cholerae HC-39A1]
gi|424615022|ref|ZP_18053740.1| hypothetical protein VCHC41A1_3265 [Vibrio cholerae HC-41A1]
gi|424618878|ref|ZP_18057485.1| hypothetical protein VCHC42A1_3165 [Vibrio cholerae HC-42A1]
gi|424619795|ref|ZP_18058344.1| hypothetical protein VCHC47A1_3253 [Vibrio cholerae HC-47A1]
gi|424626625|ref|ZP_18065049.1| hypothetical protein VCHC50A1_3327 [Vibrio cholerae HC-50A1]
gi|424627515|ref|ZP_18065851.1| hypothetical protein VCHC51A1_3208 [Vibrio cholerae HC-51A1]
gi|424631316|ref|ZP_18069512.1| hypothetical protein VCHC52A1_3326 [Vibrio cholerae HC-52A1]
gi|424638230|ref|ZP_18076200.1| hypothetical protein VCHC55A1_3320 [Vibrio cholerae HC-55A1]
gi|424642129|ref|ZP_18079974.1| hypothetical protein VCHC56A1_3387 [Vibrio cholerae HC-56A1]
gi|424643747|ref|ZP_18081504.1| hypothetical protein VCHC56A2_0569 [Vibrio cholerae HC-56A2]
gi|424646641|ref|ZP_18084343.1| hypothetical protein VCHC57A1_3229 [Vibrio cholerae HC-57A1]
gi|424650533|ref|ZP_18088082.1| hypothetical protein VCHC57A2_3238 [Vibrio cholerae HC-57A2]
gi|424654315|ref|ZP_18091635.1| hypothetical protein VCHC81A2_3052 [Vibrio cholerae HC-81A2]
gi|424661579|ref|ZP_18098715.1| hypothetical protein VCHE16_3681 [Vibrio cholerae HE-16]
gi|429888311|ref|ZP_19369796.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae PS15]
gi|440711817|ref|ZP_20892458.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
4260B]
gi|443503809|ref|ZP_21070777.1| hypothetical protein VCHC64A1_01791 [Vibrio cholerae HC-64A1]
gi|443507714|ref|ZP_21074488.1| hypothetical protein VCHC65A1_01789 [Vibrio cholerae HC-65A1]
gi|443510307|ref|ZP_21076978.1| hypothetical protein VCHC67A1_00552 [Vibrio cholerae HC-67A1]
gi|443516841|ref|ZP_21083293.1| hypothetical protein VCHC68A1_03194 [Vibrio cholerae HC-68A1]
gi|443520499|ref|ZP_21086835.1| hypothetical protein VCHC71A1_03047 [Vibrio cholerae HC-71A1]
gi|443522528|ref|ZP_21088777.1| hypothetical protein VCHC72A2_00540 [Vibrio cholerae HC-72A2]
gi|443525449|ref|ZP_21091613.1| hypothetical protein VCHC78A1_03374 [Vibrio cholerae HC-78A1]
gi|443533129|ref|ZP_21099080.1| hypothetical protein VCHC80A1_03203 [Vibrio cholerae HC-80A1]
gi|443536807|ref|ZP_21102665.1| hypothetical protein VCHC81A1_00332 [Vibrio cholerae HC-81A1]
gi|449057459|ref|ZP_21735755.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae O1
str. Inaba G4222]
gi|9657934|gb|AAF96431.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549277|gb|EAX59308.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121631418|gb|EAX63790.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124116485|gb|EAY35305.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|125620973|gb|EAZ49323.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|126509922|gb|EAZ72516.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|146314728|gb|ABQ19268.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|148874232|gb|EDL72367.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|149740478|gb|EDM54601.1| GTP-binding protein [Vibrio cholerae MZO-2]
gi|150425143|gb|EDN16920.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227011239|gb|ACP07450.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|227015421|gb|ACP11630.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|229333988|gb|EEN99473.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
12129(1)]
gi|229336991|gb|EEO02009.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae bv.
albensis VL426]
gi|229339880|gb|EEO04890.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae TM
11079-80]
gi|229346481|gb|EEO11452.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae RC9]
gi|229349712|gb|EEO14667.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae TMA
21]
gi|229353529|gb|EEO18467.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae B33]
gi|229356652|gb|EEO21570.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae BX
330286]
gi|229372338|gb|ACQ62760.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
MJ-1236]
gi|254845394|gb|EET23808.1| ribosomal biogenesis GTPase [Vibrio cholerae MO10]
gi|255736449|gb|EET91847.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholera CIRS
101]
gi|260840596|gb|EEX67152.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. RC341]
gi|262022332|gb|EEY41040.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae RC27]
gi|262030988|gb|EEY49615.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae INDRE
91/1]
gi|262032947|gb|EEY51484.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae CT
5369-93]
gi|262350074|gb|EEY99209.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. RC586]
gi|297535967|gb|EFH74801.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297541309|gb|EFH77360.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae MAK
757]
gi|340040364|gb|EGR01337.1| hypothetical protein VCHCUF01_2466 [Vibrio cholerae HCUF01]
gi|340040980|gb|EGR01952.1| hypothetical protein VCHE39_1610 [Vibrio cholerae HE39]
gi|340047417|gb|EGR08342.1| hypothetical protein VCHE48_2657 [Vibrio cholerae HE48]
gi|341623856|gb|EGS49374.1| hypothetical protein VCHC40A1_1596 [Vibrio cholerae HC-40A1]
gi|341625609|gb|EGS51039.1| hypothetical protein VCHC70A1_0532 [Vibrio cholerae HC-70A1]
gi|341629996|gb|EGS55113.1| hypothetical protein VCHC48A1_3290 [Vibrio cholerae HC-48A1]
gi|341632950|gb|EGS57800.1| hypothetical protein VCHC02A1_3281 [Vibrio cholerae HC-02A1]
gi|341638651|gb|EGS63291.1| hypothetical protein VCHFU02_1799 [Vibrio cholerae HFU-02]
gi|341641222|gb|EGS65779.1| hypothetical protein VCHE09_3351 [Vibrio cholerae HE-09]
gi|341643624|gb|EGS67905.1| hypothetical protein VCHC38A1_3200 [Vibrio cholerae HC-38A1]
gi|356425272|gb|EHH78644.1| hypothetical protein VCHC21A1_2980 [Vibrio cholerae HC-21A1]
gi|356426722|gb|EHH80016.1| hypothetical protein VCHC19A1_0557 [Vibrio cholerae HC-19A1]
gi|356431494|gb|EHH84699.1| hypothetical protein VCHC23A1_2468 [Vibrio cholerae HC-23A1]
gi|356435197|gb|EHH88355.1| hypothetical protein VCHC28A1_1804 [Vibrio cholerae HC-28A1]
gi|356437765|gb|EHH90849.1| hypothetical protein VCHC22A1_3026 [Vibrio cholerae HC-22A1]
gi|356441324|gb|EHH94243.1| hypothetical protein VCHC32A1_1799 [Vibrio cholerae HC-32A1]
gi|356441408|gb|EHH94320.1| hypothetical protein VCHC33A2_2999 [Vibrio cholerae HC-33A2]
gi|356446643|gb|EHH99443.1| hypothetical protein VCHC43A1_2443 [Vibrio cholerae HC-43A1]
gi|356453984|gb|EHI06641.1| hypothetical protein VCHC48B2_1609 [Vibrio cholerae HC-48B2]
gi|356648585|gb|AET28639.1| ribosomal biogenesis GTPase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378796551|gb|AFC60021.1| GTPase YlqF [Vibrio cholerae IEC224]
gi|395919908|gb|EJH30731.1| hypothetical protein VCCP10325_2365 [Vibrio cholerae CP1032(5)]
gi|395926019|gb|EJH36810.1| hypothetical protein VCCP104114_3649 [Vibrio cholerae CP1041(14)]
gi|395933039|gb|EJH43782.1| hypothetical protein VCCP104619_1648 [Vibrio cholerae CP1046(19)]
gi|395934384|gb|EJH45123.1| hypothetical protein VCCP104215_1188 [Vibrio cholerae CP1042(15)]
gi|395935877|gb|EJH46612.1| hypothetical protein VCCP104821_2368 [Vibrio cholerae CP1048(21)]
gi|395937663|gb|EJH48376.1| hypothetical protein VCHC20A2_3622 [Vibrio cholerae HC-20A2]
gi|395942046|gb|EJH52723.1| hypothetical protein VCHC43B1_1524 [Vibrio cholerae HC-43B1]
gi|395948978|gb|EJH59612.1| hypothetical protein VCHC46A1_3809 [Vibrio cholerae HC-46A1]
gi|395950708|gb|EJH61327.1| hypothetical protein VCHE45_3420 [Vibrio cholerae HE-45]
gi|395955699|gb|EJH66293.1| hypothetical protein VCHE25_0243 [Vibrio cholerae HE-25]
gi|395957151|gb|EJH67734.1| hypothetical protein VCHC42A1_3165 [Vibrio cholerae HC-42A1]
gi|395963794|gb|EJH74050.1| hypothetical protein VCHC56A2_0569 [Vibrio cholerae HC-56A2]
gi|395967381|gb|EJH77471.1| hypothetical protein VCHC57A2_3238 [Vibrio cholerae HC-57A2]
gi|395968822|gb|EJH78741.1| hypothetical protein VCCP10303_3283 [Vibrio cholerae CP1030(3)]
gi|395979430|gb|EJH88780.1| hypothetical protein VCHC47A1_3253 [Vibrio cholerae HC-47A1]
gi|408006933|gb|EKG45048.1| hypothetical protein VCHC41A1_3265 [Vibrio cholerae HC-41A1]
gi|408008337|gb|EKG46336.1| hypothetical protein VCHC50A1_3327 [Vibrio cholerae HC-50A1]
gi|408010032|gb|EKG47910.1| hypothetical protein VCHC39A1_0532 [Vibrio cholerae HC-39A1]
gi|408019247|gb|EKG56654.1| hypothetical protein VCHC55A1_3320 [Vibrio cholerae HC-55A1]
gi|408019801|gb|EKG57185.1| hypothetical protein VCHC56A1_3387 [Vibrio cholerae HC-56A1]
gi|408027488|gb|EKG64460.1| hypothetical protein VCHC52A1_3326 [Vibrio cholerae HC-52A1]
gi|408038854|gb|EKG75177.1| hypothetical protein VCCP103710_3380 [Vibrio cholerae CP1037(10)]
gi|408039846|gb|EKG76107.1| hypothetical protein VCHC57A1_3229 [Vibrio cholerae HC-57A1]
gi|408040225|gb|EKG76428.1| hypothetical protein VCCP1040_3257 [Vibrio cholerae CP1040(13)]
gi|408047038|gb|EKG82694.1| hypothetical protein VCHE16_3681 [Vibrio cholerae HE-16]
gi|408047380|gb|EKG83012.1| hypothetical protein VCCP104417_3274 [Vibrio Cholerae CP1044(17)]
gi|408048915|gb|EKG84266.1| hypothetical protein VCCP1050_3160 [Vibrio cholerae CP1050(23)]
gi|408059689|gb|EKG94437.1| hypothetical protein VCHC81A2_3052 [Vibrio cholerae HC-81A2]
gi|408060555|gb|EKG95239.1| hypothetical protein VCHC51A1_3208 [Vibrio cholerae HC-51A1]
gi|408609596|gb|EKK82972.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
CP1033(6)]
gi|408623897|gb|EKK96851.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-1A2]
gi|408625683|gb|EKK98588.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-41B1]
gi|408627504|gb|EKL00311.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-17A1]
gi|408638015|gb|EKL10015.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-55C2]
gi|408647204|gb|EKL18739.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-59A1]
gi|408647709|gb|EKL19176.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-50A2]
gi|408650104|gb|EKL21402.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-61A2]
gi|408655823|gb|EKL26931.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-77A1]
gi|408656399|gb|EKL27495.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-62A1]
gi|408663260|gb|EKL34140.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HE-40]
gi|408666978|gb|EKL37750.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HE-46]
gi|408845178|gb|EKL85295.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-02C1]
gi|408846797|gb|EKL86882.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-37A1]
gi|408846994|gb|EKL87072.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-17A2]
gi|408855026|gb|EKL94764.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-44C1]
gi|408856773|gb|EKL96465.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-46B1]
gi|408862644|gb|EKM02150.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-59B1]
gi|408877069|gb|EKM16170.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-62B1]
gi|408879783|gb|EKM18734.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-69A1]
gi|429224608|gb|EKY30961.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae PS15]
gi|439973304|gb|ELP49547.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae
4260B]
gi|443431837|gb|ELS74379.1| hypothetical protein VCHC64A1_01791 [Vibrio cholerae HC-64A1]
gi|443435737|gb|ELS81870.1| hypothetical protein VCHC65A1_01789 [Vibrio cholerae HC-65A1]
gi|443440655|gb|ELS90337.1| hypothetical protein VCHC67A1_00552 [Vibrio cholerae HC-67A1]
gi|443441770|gb|ELS95131.1| hypothetical protein VCHC68A1_03194 [Vibrio cholerae HC-68A1]
gi|443445770|gb|ELT02486.1| hypothetical protein VCHC71A1_03047 [Vibrio cholerae HC-71A1]
gi|443451381|gb|ELT11636.1| hypothetical protein VCHC72A2_00540 [Vibrio cholerae HC-72A2]
gi|443456209|gb|ELT19912.1| hypothetical protein VCHC78A1_03374 [Vibrio cholerae HC-78A1]
gi|443463673|gb|ELT34673.1| hypothetical protein VCHC80A1_03203 [Vibrio cholerae HC-80A1]
gi|443466816|gb|ELT41472.1| hypothetical protein VCHC81A1_00332 [Vibrio cholerae HC-81A1]
gi|448263287|gb|EMB00533.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio cholerae O1
str. Inaba G4222]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|153813998|ref|ZP_01966666.1| hypothetical protein RUMTOR_00205 [Ruminococcus torques ATCC 27756]
gi|317502412|ref|ZP_07960577.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088005|ref|ZP_08336928.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336439693|ref|ZP_08619300.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848394|gb|EDK25312.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
ATCC 27756]
gi|316896222|gb|EFV18328.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409316|gb|EGG88765.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336015591|gb|EGN45405.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 280
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 81/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IE+ D+R+P + RN + + +N + +++LNK DL
Sbjct: 10 MTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKN-KARLILLNKSDLAE---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ I+D Y + Y+ +
Sbjct: 65 -------------------------------------ERINDEWIDYFKDRGYSAVKV-- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
N K +N +RS+ + K + R + + N V MVVG+PN
Sbjct: 86 ---NSKKGGGMNQIRSAIQEACK------------EKTERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN+L GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINSL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ E G +LA +++D ++ ++ ++ +LN + +++ E +D+ L +
Sbjct: 182 DQEVGKKLAFIGSIKDEILQTEELSTELIKFLNAEYAGVLEEKYSI-EHLEDVYECLTEI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A + R ++ DT + A I ++ FR G G + L+R
Sbjct: 241 AKSRHCIVRGSEL---------DTEKAAAILLDDFRSGKLGRISLER 278
>gi|153801439|ref|ZP_01956025.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|124123014|gb|EAY41757.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKYYPERLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|358451363|ref|ZP_09161797.1| GTPase YlqF [Marinobacter manganoxydans MnI7-9]
gi|357224596|gb|EHJ03127.1| GTPase YlqF [Marinobacter manganoxydans MnI7-9]
Length = 289
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
K + A+ +H ++ +A+ IL +++ MT H + VM++G+PNVGKS++IN
Sbjct: 77 KERGVRAITLTHNQRNEALSIL----KLAEEMTPGHDRQKSALRVMILGIPNVGKSTLIN 132
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
L K G + VTR+ +K+ L+Y DTPG P++ CG RLA
Sbjct: 133 TLAGRPAAK-----TGNEPAVTRA-QQAIKLPNNILLY--DTPGFLWPKLSPEACGYRLA 184
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
++ ++ ++A + YL + +E D + L+ A K+++F R
Sbjct: 185 VTGAIRSAVLDFEDVAMFEAEYLLEAYPELVRARYGFEELPRDALALMDGIAAKRRFFGR 244
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD +V+ + + FR G G + L+
Sbjct: 245 G---------GVPDLHKVSEVLLNEFRSGKLGRISLE 272
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I+K + +D++IEV D+R+PF+ N L+ +++ P++ VLNKRDL + +
Sbjct: 10 MHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVP-ALRGDTPLIKVLNKRDLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KE+ + + N RN ++ +++ MT H + VM++
Sbjct: 69 EQWLAWLEKERGVRAITLTHNQRNEAL--------SILKLAEEMTPGHDRQKSALRVMIL 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|384455756|ref|YP_005668351.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959722|ref|ZP_12602472.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|417960827|ref|ZP_12603348.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|417962402|ref|ZP_12604612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|417965561|ref|ZP_12607069.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|417967252|ref|ZP_12608411.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|417968292|ref|ZP_12609325.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|418372609|ref|ZP_12964701.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|346984099|dbj|BAK79775.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380332721|gb|EIA23467.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|380335014|gb|EIA25312.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|380336373|gb|EIA26391.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|380337724|gb|EIA26736.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|380337767|gb|EIA26777.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|380339957|gb|EIA28612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|380342278|gb|EIA30723.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 286
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 91/352 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I+ + VD+VIE+ D+R + N ++ ++ +P ++VL+K DL
Sbjct: 10 MFKTKKEIKNMINLVDLVIEIRDARSVISTTNPDIEMLTKD-KPKIIVLSKVDL------ 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+DN T E Y
Sbjct: 63 ----------------------------------------ADNNTTNKWIEYYKNQ---- 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKA-VPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
G+P + ++ +R+ ++K KA + L + + RY V N T+ M++G+P
Sbjct: 79 GIPCID----VDIIRNKNIKNIKAQINFL-----MKSKLDRYRSKGVKNYTLRGMILGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS+IN + ++ + K VG + GVT+S I K I +LDTPGI P+ D
Sbjct: 130 NVGKSSLINKISNNKIAK-----VGNRPGVTKS---NQWIKTKWDIDLLDTPGILWPKFD 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-----EPSDDIVM 292
+ E G+ L +++D ++ ++ +L YL + NYR NL+ E SDD+
Sbjct: 182 STEVGLNLVYIGSVKDEILDVQDVCYNMLEYLLK--NYR----MNLESKYKVEVSDDVSD 235
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ K + + D +A I I FR G G++ L+R
Sbjct: 236 SMDILGKKLGCLSKGVSI---------DYNRLAHIIIGDFRSGKIGNISLER 278
>gi|451972911|ref|ZP_21926112.1| putative GTPase YlqF [Vibrio alginolyticus E0666]
gi|451931213|gb|EMD78906.1| putative GTPase YlqF [Vibrio alginolyticus E0666]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ Q ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQ-IRGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + +EQ H+ + T + V +I+ + ++ HR E+ N M+
Sbjct: 72 QLWIEHLEQEQ-HVKAMAITTS---EPQEVHRIMELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAHYADKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G G
Sbjct: 221 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGILGQ 271
Query: 340 VMLDR 344
+ L+R
Sbjct: 272 ITLER 276
>gi|255570795|ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
gi|223534309|gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]
Length = 373
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 59/281 (20%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KH 59
M I + + VD VIEV D+R+P + LL + R ++V+NK DL N +
Sbjct: 26 MAAASSAIAERISLVDFVIEVRDARIPLSSECQLLTNHSDSSR-RIIVMNKMDLANRLQL 84
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ I K K++ +S I ++ N V++ L LQ + + T+M+
Sbjct: 85 KDWI--KYFKQRGFVSYAINSH----NKDNVKEFLNFLQGQVRGLKNIDHSGC-TITMMM 137
Query: 120 VGVPNVGKSSIINAL----RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
VG+PNVGKS++ +L R S +KGK L+H
Sbjct: 138 VGIPNVGKSALAKSLHHIGRISAAEKGK-------LKHAK-------------------V 171
Query: 176 VPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
P+ G++ I++L++ + + I P IY+LDTPG+ P+
Sbjct: 172 TPHPGETKDISSLKACSL--------------------SLIIGSHPNIYVLDTPGVLPPQ 211
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
I + E +LA T +D L+GE +A Y L LN + Y+
Sbjct: 212 IFDAEVCFKLALTGTFRDGLIGERELAQYFLAILNLSDEYK 252
>gi|450011007|ref|ZP_21828933.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|450023399|ref|ZP_21830596.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
gi|449189790|gb|EMB91418.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|449193495|gb|EMB94877.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
Length = 283
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 151/354 (42%), Gaps = 88/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLIKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
K+ +N+ S +KK +A L T + + R + N M+VG+PNV
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGLMTDKLVK---LRERGIQKENLRTMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 133 GKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFEEE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 185 AVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM---- 240
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|410727082|ref|ZP_11365305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
gi|410599417|gb|EKQ53970.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
Length = 287
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 96/361 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N +++ ++ +P +++LNK D
Sbjct: 10 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEG-KPRIILLNKSD------- 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + KV KE + +++++ +
Sbjct: 62 -LTDSKVTKEW-------------------------INYLTEDDVKVLE----------- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPN 178
+N L+ +K K P L TL + + R + N T VMVVG+PN
Sbjct: 85 ----------VNCLKGDGLKNIK--PTLLTL--LKEKHDRLKAKGMVNITMRVMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + +++ K G + GVT+ S+ I I +LDTPG+ P+ ++
Sbjct: 131 VGKSTFINKMARNNIAK-----TGDRPGVTK---SKQWIKTGIGIEMLDTPGVLWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGN---------YRYVDFFNLDEPSDD 289
E + LA ++D + ++I + L + R N Y+ + F + P D
Sbjct: 183 DETALNLAFTGAIKDEI---MDIEELALKLVERLQNSYEEKLKERYKLTEVF--ENPLDT 237
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLEL 349
+ AI K KR +S + D +A I ++ FR G G++ L+R E
Sbjct: 238 L------DAIGK---KRGTLISGGQI----DYNRIAVILLDEFRGGKMGNITLERPVEED 284
Query: 350 D 350
D
Sbjct: 285 D 285
>gi|417811483|ref|ZP_12458144.1| hypothetical protein VCHC49A2_0457 [Vibrio cholerae HC-49A2]
gi|418331224|ref|ZP_12942171.1| hypothetical protein VCHC06A1_0555 [Vibrio cholerae HC-06A1]
gi|418353900|ref|ZP_12956625.1| hypothetical protein VCHC61A1_0318 [Vibrio cholerae HC-61A1]
gi|421321170|ref|ZP_15771724.1| hypothetical protein VCCP103811_2444 [Vibrio cholerae CP1038(11)]
gi|423873517|ref|ZP_17721722.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-60A1]
gi|424011575|ref|ZP_17754423.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-55B2]
gi|424603682|ref|ZP_18042735.1| hypothetical protein VCCP1047_3453 [Vibrio cholerae CP1047(20)]
gi|443529440|ref|ZP_21095457.1| hypothetical protein VCHC7A1_00540 [Vibrio cholerae HC-7A1]
gi|340044303|gb|EGR05251.1| hypothetical protein VCHC49A2_0457 [Vibrio cholerae HC-49A2]
gi|356421314|gb|EHH74816.1| hypothetical protein VCHC06A1_0555 [Vibrio cholerae HC-06A1]
gi|356454965|gb|EHI07612.1| hypothetical protein VCHC61A1_0318 [Vibrio cholerae HC-61A1]
gi|395920824|gb|EJH31645.1| hypothetical protein VCCP103811_2444 [Vibrio cholerae CP1038(11)]
gi|395969683|gb|EJH79540.1| hypothetical protein VCCP1047_3453 [Vibrio cholerae CP1047(20)]
gi|408646231|gb|EKL17848.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-60A1]
gi|408868062|gb|EKM07408.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HC-55B2]
gi|443459010|gb|ELT26404.1| hypothetical protein VCHC7A1_00540 [Vibrio cholerae HC-7A1]
Length = 302
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 105 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 155
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 156 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDEL 215
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 216 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 264
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 1 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 60 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
>gi|24379433|ref|NP_721388.1| GTPase YlqF [Streptococcus mutans UA159]
gi|397649667|ref|YP_006490194.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449865443|ref|ZP_21779001.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
gi|449869774|ref|ZP_21780268.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449889171|ref|ZP_21787514.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449892459|ref|ZP_21788463.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449914950|ref|ZP_21795950.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449936859|ref|ZP_21804235.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449941225|ref|ZP_21805455.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449985491|ref|ZP_21819700.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449989503|ref|ZP_21821083.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|450041972|ref|ZP_21837577.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|450077403|ref|ZP_21850403.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|450080998|ref|ZP_21851443.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|450115830|ref|ZP_21864142.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|450121367|ref|ZP_21866266.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|450154162|ref|ZP_21877579.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|24377367|gb|AAN58694.1|AE014939_1 putative GTP-binding protein [Streptococcus mutans UA159]
gi|392603236|gb|AFM81400.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449152269|gb|EMB55980.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449157338|gb|EMB60782.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449157671|gb|EMB61107.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449165184|gb|EMB68207.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449179091|gb|EMB81319.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449182465|gb|EMB84489.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|449197292|gb|EMB98480.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|449211208|gb|EMC11622.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|449215759|gb|EMC15938.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|449227644|gb|EMC27056.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|449229232|gb|EMC28556.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|449238008|gb|EMC36795.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|449250396|gb|EMC48458.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449256080|gb|EMC53914.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449264294|gb|EMC61640.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
Length = 283
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 151/354 (42%), Gaps = 88/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ C C +K Q I
Sbjct: 66 -------------------STCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
K+ +N+ S +KK +A L T + + R + N M+VG+PNV
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGLMTDKLVK---LRERGIQKENLRTMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 133 GKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFEEE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 185 AVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM---- 240
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|422312345|ref|ZP_16396008.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
CP1035(8)]
gi|408615275|gb|EKK88492.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
CP1035(8)]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|91225489|ref|ZP_01260611.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
gi|254229237|ref|ZP_04922656.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
gi|262395587|ref|YP_003287440.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
gi|269967447|ref|ZP_06181505.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
gi|91189852|gb|EAS76125.1| putative GTPase YlqF [Vibrio alginolyticus 12G01]
gi|151938322|gb|EDN57161.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25]
gi|262339181|gb|ACY52975.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio sp. Ex25]
gi|269827945|gb|EEZ82221.1| hypothetical protein VMC_29350 [Vibrio alginolyticus 40B]
Length = 314
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ Q ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQ-IRGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + +EQ H+ + T + V +I+ + ++ HR E+ N M+
Sbjct: 72 QLWIEHLEQEQ-HVKAMAITTS---EPQEVHRIMELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAHYADKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 VMLDR 344
+ L+R
Sbjct: 272 ITLER 276
>gi|410074115|ref|XP_003954640.1| hypothetical protein KAFR_0A00670 [Kazachstania africana CBS 2517]
gi|372461222|emb|CCF55505.1| hypothetical protein KAFR_0A00670 [Kazachstania africana CBS 2517]
Length = 361
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 78/133 (58%), Gaps = 14/133 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM-----KKGKAVPVGPKAGVTRSVMSQVKI-----SEK 220
V+V G+PNVGKS++IN+LRS + K KA G +AGVTRSV +K+ S
Sbjct: 148 VLVSGMPNVGKSTLINSLRSFSLSTKGNKMKKACRTGNEAGVTRSVSEVIKLMKEEDSAH 207
Query: 221 PLIYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
P +Y++D+PGI LP R+ N + A C ++ +L+ + ADY+LF +N D
Sbjct: 208 P-VYLIDSPGIGLPGRVSNQSRILSQALCECVKTNLIDPVIQADYLLFLMNLQNPITDCD 266
Query: 280 FF--NLDEPSDDI 290
++ + + P++DI
Sbjct: 267 WYPDSSENPTNDI 279
>gi|373115378|ref|ZP_09529552.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670444|gb|EHO35525.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 294
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 145/346 (41%), Gaps = 89/346 (25%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ I+ LK VD+V E+ D+R+P + RN + + V +P ++VLN
Sbjct: 15 RQIQADLKLVDLVAEIIDARIPISSRNPDIDELVGE-KPRLIVLN--------------- 58
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
R +Q+ P + + T + R + +
Sbjct: 59 --RADQAD---------------------PAMNRV---WTDWFRRQGW------------ 80
Query: 126 GKSSIINALRSSHMKKGKAVPILPTL--QHISDNMTRYHRTEVYNTTV--MVVGVPNVGK 181
A+ ++ + GK V T+ Q + + + ++ + V MVVGVPNVGK
Sbjct: 81 -------AVLETNARDGKGVGQFSTVIRQALKEKLEQWKAKGLVGRPVRAMVVGVPNVGK 133
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
S+ IN + K K+ G + GVTR + +S + +LDTPGI P+ ++
Sbjct: 134 STFIN-----QVAKRKSAKAGNRPGVTR---GKQWVSVDAGLELLDTPGILWPKFEDETT 185
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE----PSDDIVMLLAKA 297
G+ LA ++D ++ +A +++ L R + + L+ P +++ L K
Sbjct: 186 GIHLAFTGAVKDEIMDLETLACHLIELLARRYPQALAERYKLEADPGLPGWELLELCGK- 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR F +S V DT +A++ ++ +R G G++ +
Sbjct: 245 -------KRGFRISGGEV----DTERMAKVLLDEYRSGKLGNLTFE 279
>gi|336054200|ref|YP_004562487.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
gi|333957577|gb|AEG40385.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
Length = 279
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D+++EV DSR+P + RN ++++ V + +P +++LNK DL +
Sbjct: 11 MNKARNQLEDKLGLIDVLVEVLDSRIPASSRNPMIEKLVGS-KPHIIILNKADLADPVLT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EK+ + +I + + N N +QK++ ++ + TR +
Sbjct: 70 KKWTEKLNQPNKYI--LALDSLHNTN---MQKLIALIKKAAAEKTR---------KLEAR 115
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G N PT++ + + G+PN G
Sbjct: 116 GASN------------------------PTIR------------------IALAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L ++ + VG K GVT+ Q + I +LDTPGI P+ + E
Sbjct: 134 KSTIINRLVGHNVAE-----VGNKPGVTKG---QRWLKTSSNIQVLDTPGILWPKFSDEE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAA ++D + ++A ++L N+R NL S L+ +AI
Sbjct: 186 VGYKLAALGAIKDSIFHADDVALFVL------KNFRAHYLKNLIRFSK-----LSSSAIT 234
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + M D + ++ RKG+ G + LDR
Sbjct: 235 EMTDPDLLLAMTEKYGMRDDYDRFSLYMLQRLRKGALGRITLDR 278
>gi|422415767|ref|ZP_16492724.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
gi|313623978|gb|EFR94077.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
Length = 287
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 141/343 (41%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R R +I +K +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR--------RVIILNKAD 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E+ ++ + +E K LP + + + E +M
Sbjct: 62 TADEKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM-- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ LRS MK +A+ M++G+PNVG
Sbjct: 105 -------AEKFERLRSKGMKP-RAI------------------------RAMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D L+ IA Y L +L + R ++ ++ S+D + LA A K
Sbjct: 185 IGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLKVETVSEDPIETLAFIAEK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R D PD A + R+ G + D
Sbjct: 245 RGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|388257794|ref|ZP_10134973.1| ribosomal biogenesis GTPase [Cellvibrio sp. BR]
gi|387938961|gb|EIK45513.1| ribosomal biogenesis GTPase [Cellvibrio sp. BR]
Length = 312
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----------ISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I AL M++ K V LP Q + ++ + EV VM++G+PNVG
Sbjct: 68 ITALWVEKMEQEKGVKALPVSQQRPEQIRNLLNVCTSLVSERQREVRPARVMIMGIPNVG 127
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G +AGVT+ +Q KI + I + DTPG P++
Sbjct: 128 KSTIINTLAGRVIAK-----TGNEAGVTK---AQQKIKLEHGILLTDTPGFLWPKLSPPS 179
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA ++D + +IA Y YL + L E + V LL +K
Sbjct: 180 CGYRLAITGAIKDTVFDYADIALYAAEYLLAAYPDALKKRYGLTELPESDVELLDAIGVK 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ V + +VA I I R G G + +
Sbjct: 240 RGCTRKGGGV---------EIQKVASILITELRAGLLGPISWE 273
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +VD+VIEV D+R+PF+ N L+ S++ P++ +LNK DL +
Sbjct: 11 MHKARKEIAEVMPHVDVVIEVIDARIPFSSENPLVP-SLRGDTPLIKLLNKADLADPAIT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L EK+ +E+ + + + R + L ++ ++ + EV VM++
Sbjct: 70 ALWVEKMEQEKG-VKALPVSQQRPEQIR-------NLLNVCTSLVSERQREVRPARVMIM 121
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN L
Sbjct: 122 GIPNVGKSTIINTL 135
>gi|294500953|ref|YP_003564653.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
gi|294350890|gb|ADE71219.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
Length = 288
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 138/295 (46%), Gaps = 66/295 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D + +
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVN-KPRIVLLNKVDKADPRVT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ ++ KEQ + I KG+++I+ + + + ++ R
Sbjct: 69 QQWLD--YYKEQGIYALAIDAQA----GKGMKQIVSSSKELLQE--KFDR---------- 110
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+R+ +KK +A+ M+VG+PNV
Sbjct: 111 --------------MRAKGVKKPRAI------------------------RAMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L S + K G + GVT++ +K+ + + +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLASKKIAK-----TGDRPGVTQA-QQWIKVGNE--LELLDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
+ G +LA ++D ++ ++A Y L +L+ + ++L+E +DIV L
Sbjct: 185 KVGYKLATTGAIKDTILNMQDVAVYALRFLSSHYPEQLKQRYDLNEIPEDIVELF 239
>gi|269104691|ref|ZP_06157387.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268161331|gb|EEZ39828.1| 50S ribosomal subunit maturation GTPase RbgA [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 305
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ V V G + VTR Q +I+
Sbjct: 100 HREEMGKNIRTMIMGIPNVGKSTIINTL------AGRKVAVTGNQPAVTRQ---QQRINL 150
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + I++A + + YL + Y D
Sbjct: 151 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMDYIDVAFFTVEYLAQA----YPD 206
Query: 280 F----FNL-DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRK 334
+NL DE D + LL + + + V D +V+ I I R
Sbjct: 207 LLKARYNLDDELPDSEIELLEEIGRNRGCLQGGGRV---------DLHKVSEILINELRN 257
Query: 335 GSFGSVMLDR 344
G+ G + ++R
Sbjct: 258 GTLGKITMER 267
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 11/136 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKH 59
M + K+IE+ L VD++IEV D+R+PF+ N L+++ +N +P+V VLNKRDL + +
Sbjct: 1 MHKARKEIEEALPKVDVIIEVLDARIPFSSENPLIKRFREKNEKPVVKVLNKRDLADPEM 60
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVM 118
+ + +EQ+ + I T+ N V +I+ + + HR E+ N M
Sbjct: 61 TQRWIDHLEQEQNVKAIAITTD----NINEVHQIMELCRKLVP-----HREEMGKNIRTM 111
Query: 119 VVGVPNVGKSSIINAL 134
++G+PNVGKS+IIN L
Sbjct: 112 IMGIPNVGKSTIINTL 127
>gi|323141924|ref|ZP_08076784.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413591|gb|EFY04450.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
Length = 286
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 147/347 (42%), Gaps = 81/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E +K VD+V+E+ D+R+P + N +LQ + +P V+ LNK D+ +
Sbjct: 15 MTKAKRMMESQIKLVDVVVEMLDARIPRSSTNPMLQ-DILGSKPKVIALNKIDMADKAQT 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN-MTRYHRTEVYN--TTV 117
+ EK++ + ++ +C P KGV++++ +Q + + ++ + V N V
Sbjct: 74 DVWLEKIKHSGLPVCKI---DC-APG-KGVKQLISAVQLAAKPVIDKWLKKGVRNRPVRV 128
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M+VG+PNVGKS++IN L
Sbjct: 129 MIVGIPNVGKSTLINRL------------------------------------------- 145
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGK+ ++ A K GVTR V I++ + +LDTPG+ P+ D
Sbjct: 146 -VGKNKVMAA---------------DKPGVTRG-QQWVTIAKG--LELLDTPGVLWPKFD 186
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAK 296
+ G LA +++ + + +L L R + + + E DD+ ++AK
Sbjct: 187 DPSVGFALAVTGAIKEDVFDREQAVELLLDLLIRKYPQDLQNKYAVSLEQGDDVNAVMAK 246
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+ + K + D +V ++ + FR G G +D
Sbjct: 247 IAVARGCLKSGGQL---------DIDKVVQLVLRDFRAGRLGRFTID 284
>gi|290580556|ref|YP_003484948.1| GTP-binding protein [Streptococcus mutans NN2025]
gi|254997455|dbj|BAH88056.1| putative GTP-binding protein [Streptococcus mutans NN2025]
Length = 273
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 1 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 56
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 57 --------------------TCTAEWCNFFEK-----QGI-------------------- 71
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 72 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 120
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 121 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 172
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 173 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 230
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ ++ F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 231 --SMTQRLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 270
>gi|81428605|ref|YP_395605.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|78610247|emb|CAI55296.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 282
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 95/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K I++ LK VD+++E+ D+R+P + N ++Q+ QN +P++L++NK D+ + +
Sbjct: 10 MAKAQKQIKERLKAVDLILEIVDARVPESSINPMIQELGQN-KPILLIMNKADMADPR-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ + T
Sbjct: 67 ------------------------------------------------RTQQWIETFKKR 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH--ISDNMTRYHRTEVYNTTV--MVVGV 176
G+ + AL + H K +P++ + +++ + + + N + M VGV
Sbjct: 79 GITAI-------ALDAQHKAK---LPMIEKVAQEILAEKLAKKRAKGIRNPVIRAMCVGV 128
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+I+N L ++K AV G + GVT+ +Q + + +LDTPG+ P+
Sbjct: 129 PNVGKSTILNRL----VQKNIAV-TGNRPGVTK---NQQWLKAGQTLELLDTPGVLWPKF 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSDDIV 291
++ G +LA + D + ++ + L +Y ++ V L+EP+ +++
Sbjct: 181 EDPTIGSKLALTGAISDAIYHPDDVVIFALEHFKEYYSSQLQKVYKVTDAELEEPAAELI 240
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
M+L K+ FK +D FI R+G G LD
Sbjct: 241 MILT----KRLGFKEDYD-------------RFCVKFINDARQGKLGRFTLD 275
>gi|242040123|ref|XP_002467456.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
gi|241921310|gb|EER94454.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
Length = 374
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 68/276 (24%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKHESLIEEKVRKEQ 71
VD+V+EV D+R+P + L++ + P V++LNK DL + S EE V
Sbjct: 43 VDLVLEVRDARVPASSSFEPLRRRRGPLEPDRRRVVLLNKADLADP---SETEEWV---- 95
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPNVGKSSI 130
++I + C N + I L + + E T T ++VG+PNVGKS+I
Sbjct: 96 AYIKKQTSCPCVAVNSHSRESIKELLNAVQTRIKEIKNGENNCTATALLVGIPNVGKSAI 155
Query: 131 INAL----RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
+NA+ R + +KGK L+H
Sbjct: 156 VNAMHQIGRIAAAEKGK-------LKH--------------------------------- 175
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
A+ SSH G TR + S K++ P IY+LDTPG+ PR N G RLA
Sbjct: 176 AIVSSH------------PGETRDI-SGYKVASHPNIYVLDTPGVLSPRFANDGSGPRLA 222
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
++D L+ E +I ++L +N YR + N
Sbjct: 223 LTGAIKDSLLEEYDIVQFLLAIVNSGKEYRKWEKLN 258
>gi|343506580|ref|ZP_08744057.1| ribosomal biogenesis GTPase [Vibrio ichthyoenteri ATCC 700023]
gi|342802290|gb|EGU37726.1| ribosomal biogenesis GTPase [Vibrio ichthyoenteri ATCC 700023]
Length = 311
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P++ VLNKRDL + +
Sbjct: 10 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMISE-LRGEKPVIKVLNKRDLADPEMT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ+ + I T+ + VQKIL + ++ HR E+ N M+
Sbjct: 69 QLWIEHLEKEQNVKAMAITTS----QPQEVQKILELCRKMAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN+L
Sbjct: 120 MGIPNVGKSTIINSL 134
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN+L G+ + + G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINSL------AGRTIAITGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 158 QNGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQAYPERLKE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + V L+ + ++ + V D + + I + R G+ G
Sbjct: 218 RYQIEELPESDVELMEEIGRRRGALRSGGRV---------DLHKASEILLHELRGGTLGQ 268
Query: 340 VMLDR 344
+ L+R
Sbjct: 269 ITLER 273
>gi|71745190|ref|XP_827225.1| GTP-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831390|gb|EAN76895.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261331439|emb|CBH14433.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 451
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 56/270 (20%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ + + +K+ D V+E+ D+R+PFT N LQ+ + + RP ++V NK ++ N +I++
Sbjct: 63 RTLAEKVKDADFVLEIRDARLPFTTGNPNLQKIIID-RPRLIVFNKAEMSNEDCNRVIQQ 121
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+ + +FT+ + + + + +Q ++ R + +VVG+PNV
Sbjct: 122 YYERTGNF---ALFTSAK----RSWRDTVEAVQRFVTHILPAQRFKTTANVGLVVGMPNV 174
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
GKS++IN+LR +H + +HR +
Sbjct: 175 GKSTLINSLRLAHEYQ-------------------FHREDFRRP---------------- 199
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
+ +AV + P G TR V V + + P I + D+PG++LP E G++L
Sbjct: 200 --------RTPEAVSIAP--GTTRGV-KLVPVCKDPNIVLYDSPGLTLPGCFAKEAGLKL 248
Query: 246 AACATL--QDHLVGEINIADYILFYLNRTG 273
AAC + D + +A YI L+ G
Sbjct: 249 AACGIIPTNDITLPRSLVARYIYDVLSAAG 278
>gi|323497165|ref|ZP_08102185.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
gi|323317740|gb|EGA70731.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
Length = 311
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G++V V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRSVAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPQRLQE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + L+ + ++ + V D + + I + R G+ G
Sbjct: 218 RYQIEELPESDIELMEEIGRRRGALRAGGRV---------DLHKCSEILLHELRNGTLGQ 268
Query: 340 V------MLDRDFLELDIS 352
V M+ ++ +E++I
Sbjct: 269 VTLELPDMITQELIEVEIE 287
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISE-LRGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E KE + + I T+ N + V KIL + ++ HR E+ N M+
Sbjct: 69 ELWIEHFEKENNVKAMAITTS----NVQEVNKILELCRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 120 MGIPNVGKSTIINTL 134
>gi|449909707|ref|ZP_21794330.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
gi|449971257|ref|ZP_21814298.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|450029521|ref|ZP_21832725.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|450035162|ref|ZP_21834851.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|450056943|ref|ZP_21842300.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|450067235|ref|ZP_21846489.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|450070397|ref|ZP_21847531.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|450093717|ref|ZP_21856703.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|450110770|ref|ZP_21862320.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|450148705|ref|ZP_21875763.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|450182873|ref|ZP_21888494.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449172252|gb|EMB74883.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|449194447|gb|EMB95803.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|449195801|gb|EMB97109.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|449206006|gb|EMC06727.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|449208171|gb|EMC08788.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|449213883|gb|EMC14206.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|449216983|gb|EMC17061.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|449224544|gb|EMC24176.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|449235498|gb|EMC34455.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|449244107|gb|EMC42495.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449261123|gb|EMC58608.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
Length = 283
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ ++ F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQRLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|226325141|ref|ZP_03800659.1| hypothetical protein COPCOM_02933 [Coprococcus comes ATCC 27758]
gi|225206489|gb|EEG88843.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus comes
ATCC 27758]
Length = 285
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 148/344 (43%), Gaps = 77/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL + K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARVPMSSRNPDIDELGKN-KARLILLNKADLADEKQ- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EE + + + N R G++ I +Q T R
Sbjct: 68 --TEEWIGYFRGKGYSAVKVNSRKGG--GIKSIQGVIQEACKEKTERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K I+N P+ MVVG+PNVG
Sbjct: 113 ------KRGILNR------------PV----------------------RAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ ++
Sbjct: 133 KSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+ G+RLA +++D ++ +A ++ ++ + + ++E + +L A A
Sbjct: 184 QVGLRLAFIGSIKDEIMNLEELAAELISFMQDAYPGVLAEKYTINEKQNSYSVLEAIAE- 242
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R V N + DT + A + ++ FR G G + L+
Sbjct: 243 -----SRHCLVRGNEL----DTAKAAGMLLDDFRNGRLGRITLE 277
>gi|150390502|ref|YP_001320551.1| HSR1-like GTP-binding protein [Alkaliphilus metalliredigens QYMF]
gi|149950364|gb|ABR48892.1| GTP-binding protein, HSR1-related [Alkaliphilus metalliredigens
QYMF]
Length = 285
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 143/337 (42%), Gaps = 76/337 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++ LK VD+V E+ D+R+P + RN + + + N +P V++LNK DL + + + V
Sbjct: 19 LKDQLKLVDVVYELLDARIPISSRNPSINEIIGN-KPRVIILNKFDLAD---QEVTNRWV 74
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
+ ++ E I NC N KG+++ + Q +
Sbjct: 75 KYFKAQGIEAIPVNCLN--SKGLKEAIEEGQKM--------------------------- 105
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
Q D M + R E +M+VG+PNVGKSSIIN
Sbjct: 106 -----------------------FQEKKDLMIKKGRKE-RPIRIMMVGIPNVGKSSIINQ 141
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L K+ G K GVT+ ++ I K + +LDTPGI P+ ++ ++LA
Sbjct: 142 LAGR-----KSARTGDKPGVTK---AKQWIRLKGNMELLDTPGILWPKFEDQNVALKLAF 193
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDDIVMLLAKAAIKKKWFKR 306
++D ++ ++A ++ L ++ + LD EP+ + M+ A KR
Sbjct: 194 TGAIKDEIMDVEDLAFRLVEKLMLENMTNLMNRYKLDSEPAGALEMMDAIG------IKR 247
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + D V+ I ++ FR G G + ++
Sbjct: 248 GAILPGREI----DYLRVSNIILDEFRAGIIGRISME 280
>gi|403234817|ref|ZP_10913403.1| GTPase YlqF [Bacillus sp. 10403023]
Length = 280
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ + G + G+T++ S +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINRLAKKNIAQ-----TGDRPGITKA-QSWIKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ +IA Y L +L + F+LD+ DDI
Sbjct: 175 ILWPKFEDQEVGLKLATTGAIKDTILNLQDIAVYALRFLEENYPDNLKERFDLDQIPDDI 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V+L + A KR + S + + T E + I R G + ++
Sbjct: 235 VILFDEIA------KRRGTMMSGGLTDYDKTAE---LIIREIRTEKLGRLTFEK 279
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L +DIV E+ D+R+P + RN ++ + ++N +P +L+LNK D + K
Sbjct: 10 MAKARRQVTEKLSLIDIVFELVDARIPASSRNPMIDEIIKN-KPRLLLLNKADKADPK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
+ +E + + + N + +G+++I+ + I +D + + +
Sbjct: 67 -VTKEWISYYKESGVHALAINSQA--GEGMKQIVNEAKVILTDKFDKMAAKGIRPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHM 139
++VG+PNVGKS++IN L ++
Sbjct: 124 LIVGIPNVGKSTLINRLAKKNI 145
>gi|449898038|ref|ZP_21790366.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
gi|449260334|gb|EMC57836.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
Length = 283
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 150/354 (42%), Gaps = 88/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++ K VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENFKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
C C +K Q I
Sbjct: 67 --------------------TCTAEWCNFFEK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
K+ +N+ S +KK +A L T + + R + N M+VG+PNV
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGLMTDKLVK---LRERGIQKENLRTMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 133 GKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFEEE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 185 AVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM---- 240
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|50310383|ref|XP_455211.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644347|emb|CAG97919.1| KLLA0F02904p [Kluyveromyces lactis]
Length = 385
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 171 VMVVGVPNVGKSSIINALR---------SSHMKKGKAVPVGPKAGVTRSVMSQVKISE-K 220
+++ G+PNVGKS+++N+LR S K K G +AGVTR+ ++IS+ K
Sbjct: 157 MLIGGMPNVGKSTLVNSLRFTGYAGLDHSDGSKPKKVAKTGDQAGVTRNTSECIRISDYK 216
Query: 221 PLIYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+++ DTPGISLP + + + + L+ C ++++LV + AD++L+ LN G Y++
Sbjct: 217 GGLFLYDTPGISLPAKAMSKQRMLSLSLCGCVKNNLVDPVIQADFLLYLLNLQGKYQFYT 276
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ P+++I +LL + +KK + + + + D+ R+ R GS S
Sbjct: 277 HYT-TTPTNNIDILL--SGLKK---QVGMTNENAAAIYWTDSWRQGRVLKSGLRSGSKKS 330
Query: 340 VMLDRDFLELD 350
EL+
Sbjct: 331 SKATPALFELE 341
>gi|219684137|ref|ZP_03539081.1| GTP-binding protein [Borrelia garinii PBr]
gi|219672126|gb|EED29179.1| GTP-binding protein [Borrelia garinii PBr]
Length = 279
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 152/349 (43%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N P+
Sbjct: 12 MKRALDLIKNNLQKTNIVLEILDARAPFSSKN-----------PLT-------------- 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD--NMTRYHRTEVYNTTVM 118
EK+ K Q+ I L H SD +T + + Y
Sbjct: 47 ----EKIIKNQTKI---------------------ILLHKSDIAQITEIIKWKKY----- 76
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPN
Sbjct: 77 ---FENLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPN 127
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 128 VGKSSIINLLSGK-----KSAKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLAD 179
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKA 297
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 180 QSIAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA 239
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 --------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|219685696|ref|ZP_03540509.1| GTP-binding protein [Borrelia garinii Far04]
gi|219672746|gb|EED29772.1| GTP-binding protein [Borrelia garinii Far04]
Length = 279
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 152/349 (43%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N P+
Sbjct: 12 MKRALDLIKNNLQKTNIVLEILDARAPFSSKN-----------PLT-------------- 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD--NMTRYHRTEVYNTTVM 118
EK+ K Q+ I L H SD +T + + Y
Sbjct: 47 ----EKIIKNQTKI---------------------ILLHKSDIAQITEIIKWKKY----- 76
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
N+G + II S+ KKG I+ ++ ++ + + + V+++GVPN
Sbjct: 77 ---FENLGNTVII----SNIYKKGMRKQIIDNIKKLA--IVKKIKNYKEKIKVLIIGVPN 127
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN L K+ V K G T+++ VKI+E+ I + D PGI + +
Sbjct: 128 VGKSSIINLLSGK-----KSTKVANKPGYTKNIQI-VKINEE--INLFDMPGILWHNLAD 179
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKA 297
+LA +++ +V I++A Y+L +++ + + + + S DI+ AKA
Sbjct: 180 QSIAKKLAILDMIKNEIVDNIDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKA 239
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
R N + + + ++I I+ FR+G FG ++LD+++
Sbjct: 240 --------RKLIHKKNELNL----EKASKILIKEFREGKFGKIILDKNY 276
>gi|448087764|ref|XP_004196405.1| Piso0_005867 [Millerozyma farinosa CBS 7064]
gi|359377827|emb|CCE86210.1| Piso0_005867 [Millerozyma farinosa CBS 7064]
Length = 373
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 172 MVVGVPNVGKSSIINALR---------SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL 222
M++G+PN+GKS+++N+LR S KK K G + GVT++ +++SE+P
Sbjct: 136 MIIGMPNIGKSTLVNSLRAVGYSNQVDSISKKKRKVAQTGGQPGVTKTTSEVIRLSEEPD 195
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDF 280
I DTPG+ LP + + E + L+ + + + + ADY+L+ LN +Y ++
Sbjct: 196 ILAYDTPGVFLPTVKDNETMLALSLVGCVHNSFIDPVIQADYLLYILNLQDPSGSKYREY 255
Query: 281 FNLDEPSDDIVMLLAKAAIKK 301
+D P++ I LL A+K+
Sbjct: 256 --IDHPTNSIDELLYHIALKR 274
>gi|295094902|emb|CBK83993.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus sp.
ART55/1]
Length = 282
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PNVGKS+ IN S+ +K VG K GVT+ +++ + I +LDTPG
Sbjct: 123 AMIVGIPNVGKSTFIN----SYARKA-CTKVGNKPGVTKG-KQWIRLGKN--IELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ D+ G+RLA ++ D ++ +IA ++ +L V +N+ E DD
Sbjct: 175 ILWPKFDDEAVGLRLAFIGSINDEILSITDIAVELIKFLQANYCNTLVQRYNI-ESVDDP 233
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V +L A K++ K+ ++ D + A + I+ FR G G + L+
Sbjct: 234 VQMLTGIAEKRQCIKKGGEL---------DYDKAAALLIDDFRSGKLGRITLE 277
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +DIVIE+ DSR+PF+ +N + + +N ++L LNK DL +
Sbjct: 10 MTKARRMMQEDIKLIDIVIELVDSRIPFSSKNPDIDELAKNKYRLIL-LNKSDLADDAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ E + + ++++ N R+ G++ I +Q + + R + + N +
Sbjct: 69 TKWENYYKNKDFAVAKI---NARDG--MGMKSINNIVQEACKEKIERDRKRGIINRPIRA 123
Query: 118 MVVGVPNVGKSSIINA 133
M+VG+PNVGKS+ IN+
Sbjct: 124 MIVGIPNVGKSTFINS 139
>gi|373494759|ref|ZP_09585358.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
gi|371967803|gb|EHO85271.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
Length = 280
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
+L + I D++ + R N +M+VGVPNVGKSS+IN L K+ G K G
Sbjct: 99 LLNLMTKIQDDINK-DRVRKKNLRLMIVGVPNVGKSSLINRLTGK-----KSAKTGDKPG 152
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
VT+ + ++ + +LDTPGI P+ ++ G++LA C +++D ++ +A ++
Sbjct: 153 VTK---GKQWLTLSNGMQLLDTPGILWPKFEDESVGIKLAFCGSIKDEILDLETLALRLI 209
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVAR 326
L + + LDE SD+ ++ + A+ R F +S + D A+
Sbjct: 210 ELLQDEYPKLLANRYKLDEISDEGLVNMDNIAL-----NRGFILSKGRI----DYSRCAK 260
Query: 327 IFIEHFRKGSFGSVMLDR 344
++ FR G + L+R
Sbjct: 261 TVLDEFRSAQIGRITLER 278
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I +LK VDIVIEV D+R+P + RN ++ + + +++LNK DL + E K
Sbjct: 20 ITSNLKLVDIVIEVIDARIPVSSRNPVIDELTAG-KQRIIILNKSDLADGN-----ETKR 73
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
E+ + + + G++++L + I D++ + R N +M+VGVPNVGK
Sbjct: 74 WMEKLGTDGIKVMTLDSMHGVGIKELLNLMTKIQDDINK-DRVRKKNLRLMIVGVPNVGK 132
Query: 128 SSIINALRSSHMKKGKAVP 146
SS+IN L K P
Sbjct: 133 SSLINRLTGKKSAKTGDKP 151
>gi|330448111|ref|ZP_08311759.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492302|dbj|GAA06256.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 316
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 11/136 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKH 59
M + K+IE+ L VD++IEV D+R+PF+ N L++ +N +P+V VLNKRDL + +
Sbjct: 12 MHKARKEIEEALPKVDVIIEVLDARIPFSSENPLIKTFRDKNDKPVVKVLNKRDLADPEM 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVM 118
L E + KEQ+ + I T N V +I+ + ++ HR E M
Sbjct: 72 TQLWIEHLEKEQNVKAIAITTE----NINEVNQIMDLCRKLAP-----HREEAGKKIRTM 122
Query: 119 VVGVPNVGKSSIINAL 134
++G+PNVGKS+IINAL
Sbjct: 123 IMGIPNVGKSTIINAL 138
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 31/190 (16%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E M++G+PNVGKS+IINAL G+ V + G + VTR Q +I+
Sbjct: 111 HREEAGKKIRTMIMGIPNVGKSTIINAL------AGRTVAITGNQPAVTRQ---QQRINL 161
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + DTPGI P+++N G RLAA ++D + I++A + + YL + Y D
Sbjct: 162 DNGVLLSDTPGILWPKVENPHSGFRLAATGAIKDTAMDYIDVAFFTIEYLIKA----YPD 217
Query: 280 F----FNLDE--PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
+NLD+ P +I L+ + K+ K V D + + I I R
Sbjct: 218 MIKARYNLDDDLPESEI-ELMEEIGRKRGCLKGGGRV---------DLHKASVILINELR 267
Query: 334 KGSFGSVMLD 343
G+ G++ L+
Sbjct: 268 NGTLGNITLE 277
>gi|385330377|ref|YP_005884328.1| GTP-binding protein, ribosome biogenesis, YlqF [Marinobacter
adhaerens HP15]
gi|311693527|gb|ADP96400.1| GTP-binding protein, ribosome biogenesis, YlqF [Marinobacter
adhaerens HP15]
Length = 312
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
+ K + A+ +H ++ +A+ IL +++ MT H + VM++G+PNVGKS++
Sbjct: 75 IEKERGVRAITLTHNQRNEALSIL----KLAEEMTPGHDRQKSALRVMILGIPNVGKSTL 130
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
IN L K G + VTR+ + +K+ L+Y DTPG P++ CG R
Sbjct: 131 INTLAGRPAAK-----TGNEPAVTRAQQA-IKLPNNILLY--DTPGFLWPKLSPEACGYR 182
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FNLDEPSDDIVMLLAKAAIK 300
LA ++ ++ ++A + YL Y D + E D + L+ A K
Sbjct: 183 LAVTGAIRSAVLDFEDVAMFEAEYLLEA----YPDLVRTRYGFAELPKDALALMDGIAEK 238
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+++F R PD +V+ + + FR G+ G + L+
Sbjct: 239 RRFFGRG---------GIPDLHKVSEVLLNEFRAGTLGRISLE 272
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I+K + +D++IEV D+R+PF+ N L+ +++ P++ VLNKRDL + +
Sbjct: 10 MHKARKEIKKVMPQMDLIIEVVDARIPFSSENPLVP-ALRGDTPLIKVLNKRDLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KE+ + + N RN ++ +++ MT H + VM++
Sbjct: 69 EQWLAWIEKERGVRAITLTHNQRNEAL--------SILKLAEEMTPGHDRQKSALRVMIL 120
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
G+PNVGKS++IN L K P + Q
Sbjct: 121 GIPNVGKSTLINTLAGRPAAKTGNEPAVTRAQQ 153
>gi|153832059|ref|ZP_01984726.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156977301|ref|YP_001448207.1| ribosomal biogenesis GTPase [Vibrio harveyi ATCC BAA-1116]
gi|148871674|gb|EDL70515.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156528895|gb|ABU73980.1| hypothetical protein VIBHAR_06087 [Vibrio harveyi ATCC BAA-1116]
Length = 314
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIDELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 272 ITLELPEMITQELIEVEIE 290
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + I T+ ++ VQKI+ ++ ++ HR E+ N M+
Sbjct: 72 QVWIDHFEKEHNVKAIAITTSQQSE----VQKIMELVRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 123 MGIPNVGKSTIINAL 137
>gi|449881531|ref|ZP_21784505.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
gi|449251169|gb|EMC49193.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
Length = 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ C C +K Q I
Sbjct: 66 -------------------STCTAEWCNFFKK-----QGI-------------------- 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ +N+ S +KK +A L ++D + + + T+ M+VG+P
Sbjct: 82 ------KALAVNSKEQSAVKKVTEAAKGL-----MTDKLVKLRERGIQKETLRTMIVGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NVGKSTLMNRLAGK-----KIAIVGNKPGVTKG---QQWLKSNKNLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
G++LA ++D+L+ I + L + R R ++ + +L+E + +I+M
Sbjct: 183 EEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKRYYPERLLERYKGIDLEEEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFLELD 350
+ +K F+ +D R + ++FI+ R G G LDR ELD
Sbjct: 241 --SMTQKLGFRDDYD------RFY-------QVFIKDVRDGRLGCYTLDR-LAELD 280
>gi|388600804|ref|ZP_10159200.1| GTPase YlqF [Vibrio campbellii DS40M4]
Length = 311
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 218 RYQIDELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 268
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 269 ITLELPEMITQELIEVEIE 287
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKAQKEIAEVIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + I T+ ++ VQKI+ ++ ++ HR E+ N M+
Sbjct: 69 QVWIDHFEKEHNVKAIAITTSQQSE----VQKIMELVRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 120 MGIPNVGKSTIINAL 134
>gi|153854844|ref|ZP_01996067.1| hypothetical protein DORLON_02072 [Dorea longicatena DSM 13814]
gi|149752546|gb|EDM62477.1| ribosome biogenesis GTP-binding protein YlqF [Dorea longicatena DSM
13814]
Length = 282
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 85/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARVPISSRNPDIDELGKN-KARLILLNKSDLAEDKW- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D + Y R + + +V+ V
Sbjct: 68 ----------------------------------------NDAWSEYFREKGF--SVVKV 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G IN + K + + R + + N V MVVG+PN
Sbjct: 86 NSKKGGGIKSINGVIQEACK---------------EKIERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI PR +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPRFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDEPSDDIVMLLA 295
+ G++LA +++D ++ +A ++ ++N NY V + +N++E +D ML
Sbjct: 182 DQAVGLKLAFIGSIKDEILQTEELAAELVKFMNE--NYPGVLENKYNVEEDTDPYGMLEK 239
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A R V N + DT + + + ++ FR G G + L+
Sbjct: 240 IAE------SRHCLVRGNEL----DTEKASVLLMDDFRNGRLGKLTLE 277
>gi|411008747|ref|ZP_11385076.1| GTPase YlqF [Aeromonas aquariorum AAK1]
Length = 316
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I AL +HM++ K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITALWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNLELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + +D + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVYDYADIAMFAADYFLKAYPERIQARYQIDALPETEIELLDLIA-R 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ F R +S D + + I + FR G G + L+
Sbjct: 238 QRGFMRKGGLS--------DLHKASEILVNEFRSGLLGRISLE 272
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL + +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L + +E+ I + T K L TL H M E+ M++
Sbjct: 69 ALWVAHMEQEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNLELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|340975747|gb|EGS22862.1| mitochondrial GTPase 1-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 372
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 55/279 (19%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----QNIRPMVLVLNKRDLINSKH 59
GL + + L NV ++IE D R+P T N L++QS+ + R ++V KRDL
Sbjct: 55 GLNKMRQSLTNVGLIIECRDFRLPITSWNPLIEQSLGCAAEEERARIIVYTKRDLAPDT- 113
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E+ ++ ++ E F PN +P + + R V+
Sbjct: 114 -----EQTKQVAQYLRE--FYTLPPPNSG-----VPYPPELRRHAAR---------AVLF 152
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+G G++ ++ S ++ ++H + R + MVVG+PN
Sbjct: 153 LGS---GRTPSHSSSLSPLLE---------IIKHYA-----ISRDSLTGLRCMVVGMPNA 195
Query: 180 GKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKI-----------SEKPLIYILD 227
GKS+++N LR M + KA G + GVTR + + V+I ++++D
Sbjct: 196 GKSTLLNRLRGHGMGRFKKAAQTGAQPGVTRKLGTPVRILPGEDMEGGEPGLGEGVFVVD 255
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
TPG+ +P + + E ++LA ++D +V + +ADY+L
Sbjct: 256 TPGVFIPYVSDPEAMVKLALVGCVKDGIVPKETLADYLL 294
>gi|312143697|ref|YP_003995143.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
gi|311904348|gb|ADQ14789.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
Length = 285
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 79/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++ LK VD++IEV D+R P++ +N LQ V++ + V VLNK+DL +
Sbjct: 9 MAKAKRILKDDLKLVDLIIEVLDARAPYSTQNPDLQSLVKD-QKRVAVLNKKDLAD---- 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P L Y + E V++
Sbjct: 64 ----------------------------------PELNQ---KWLNYFKGE----AVLLN 82
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ G + N L H I++ +++ R + M++G+PNVG
Sbjct: 83 SITGEGVGELKNLLNGLHY-------------EITNKLSKKGR-KARRIRAMIIGIPNVG 128
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L S KA + K GVTR V +S+K + +LDTPGI P + +
Sbjct: 129 KSALINLLAGS-----KAANIADKPGVTRG-RQWVNVSKK--VRLLDTPGILWPSFSDED 180
Query: 241 CGMRLAACATLQDHLVGEINIADYILF-YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+LA + + V + +A Y L ++ + +F+ LD +D +LA A
Sbjct: 181 TAYKLALTGAVSND-VFDFELAAYKLIKFIKNIKAEKLEEFYQLDYLADHSYDILADIA- 238
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V D A I I +R G G + L++
Sbjct: 239 ----RKRGCLMTGGKV----DRNRAAGIVINDYRDGKLGRITLEK 275
>gi|444428555|ref|ZP_21223876.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238216|gb|ELU49835.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 311
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPKKLKE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 218 RYQIDELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 268
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 269 ITLELPEMITQELIEVEIE 287
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + I T+ ++ VQKI+ ++ ++ HR E+ N M+
Sbjct: 69 QVWIDHFEKEHNVKAIAITTSQQSE----VQKIMELVRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 120 MGIPNVGKSTIINAL 134
>gi|395324957|gb|EJF57388.1| hypothetical protein DICSQDRAFT_140418 [Dichomitus squalens
LYAD-421 SS1]
Length = 424
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 154/362 (42%), Gaps = 85/362 (23%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
L D+V+E+ DSR+P T N + ++Q K R+E+
Sbjct: 32 LNKTDVVLELRDSRLPLTSINRNFEGALQ-------------------------KWRRER 66
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
H ++ P P+ I + + + + ++ VP G
Sbjct: 67 GHGPSTASSSLDTPTAG------PSNGPICERVVVFSKRDL---------VPEWGIKPFQ 111
Query: 132 NALRSSH------MKKGKAVPILPTLQHISDNMTRYH--RTEVYNTTVMVVGVPNVGKSS 183
AL + + + L + N+ + H R+E+ V+VVG+PNVGKS+
Sbjct: 112 RALANKYRDQQHFFASWNRTRDIKALSELLVNVAKEHPYRSEL---NVLVVGMPNVGKST 168
Query: 184 IINALRSSHMK--KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID---- 237
++NALR+ + KA+ G+TR + +++K+S +PL+Y D+PG+ LP +
Sbjct: 169 LLNALRNIGIAGPTPKALRTSAHPGMTRVLSTRLKLSVEPLVYAYDSPGVMLPFLGRDMT 228
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLN-------------RTGNYRYVD---FF 281
E G++LA A +++ L +A Y+L+ LN +G +D F
Sbjct: 229 GAERGVKLALIAGIKEGLYDTEALASYLLYRLNVLDPVSPAYLKLLPSGTPPLLDVHEFL 288
Query: 282 NLDEPSDDIVML-------LAKAAIKK-KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
NL + + ML ++AA+ +W++ ++S S PD + +E FR
Sbjct: 289 NLL--AKRLCMLKRGGVPDSSRAAVWFIRWWREEGGLASASAPALPDYSAASG--METFR 344
Query: 334 KG 335
+G
Sbjct: 345 RG 346
>gi|203288075|ref|YP_002223090.1| conserved hypothetical GTP-binding protein [Borrelia recurrentis
A1]
gi|201085295|gb|ACH94869.1| conserved hypothetical GTP-binding protein [Borrelia recurrentis
A1]
Length = 291
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 81/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L+ I+ ++K +IV+E+ D+R PF+ +N L++ ++N + +++LNK DL+ H
Sbjct: 20 MKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLV---H 76
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E I + + ++ + V+ TN K + Y V+V
Sbjct: 77 EGEILKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKKIKTYKEK----IKVLV 132
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+GVPNVGKSSIIN L V
Sbjct: 133 IGVPNVGKSSIINLL--------------------------------------------V 148
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GK S V K G T+++ +K++E I + D PGI ++N
Sbjct: 149 GKKS---------------TSVANKPGHTKNI-QILKVNED--INLFDMPGILWHNLENQ 190
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E +LA +++ ++ +A Y+L ++ + + +N+ S D + +L + A
Sbjct: 191 EIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNI--ISTDTLKILEEFAT 248
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + + D ++I I+ +R+G FG ++LD
Sbjct: 249 IRGFINKKYGT---------DIESASKILIKEYREGKFGKIILD 283
>gi|433462620|ref|ZP_20420197.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
gi|432188568|gb|ELK45749.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
Length = 280
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
+ M++G+PNVGKS++IN L + M K G K GVT Q I K +LDT
Sbjct: 121 SRAMILGIPNVGKSTLINRLANKKMAK-----TGDKPGVT---TKQQWIKVKKEFELLDT 172
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD 288
PGI P+ + E G RLAA T++D ++ + ++A Y+L Y+ + F D D
Sbjct: 173 PGILWPKFEEEEVGYRLAAIGTIKDQILPKEDVAAYVLDYMRDHYPALLEERFGFDR-YD 231
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
DI+ + K+ + S V F +V+ + ++ R G FG + L+
Sbjct: 232 DIMEAFEQIGRKRGC------LESGGVVNFE---KVSDVILQDLRSGKFGLISLE 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ + LK VD VIE+ D+R PF+ +N +L + +Q +P ++VL K+DL + +
Sbjct: 10 MAKAKREAAEKLKLVDFVIELVDARAPFSSQNPMLHEILQE-KPKMIVLMKKDLADPQKT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E E S I V + + + V + L + + M++
Sbjct: 69 AEWIEYF--EASSIPAVAIEANKKQDVQRVVQKAKELGREKLEKLKAKGVRPRASRAMIL 126
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
G+PNVGKS++IN L + M K P + T Q
Sbjct: 127 GIPNVGKSTLINRLANKKMAKTGDKPGVTTKQQ 159
>gi|363895220|ref|ZP_09322240.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
gi|361959977|gb|EHL13238.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
Length = 285
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 87/351 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I K++K V++V+E+ D+R P + +N + S+ N + ++VL K+DL +
Sbjct: 14 MKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDID-SMINGKSKLVVLTKKDLAD---- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EE + K S+ E KG++ +V V
Sbjct: 69 ---EENIGKFISYYKE-----------KGIK------------------------SVAVN 90
Query: 121 GVPNVGKSSIINAL---RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
G S +IN L + + +K KA I+ I M+VG+P
Sbjct: 91 ATKKSGISQLINILEQIKEENYQKNKAKGIIKKPLRI-----------------MIVGIP 133
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN + K+ G G+T+ SQ + K I +LDTPGI P+I+
Sbjct: 134 NVGKSTLINQIIGK-----KSAKTGNMPGITK---SQQWLKIKGDIELLDTPGILWPKIE 185
Query: 238 NLECGMRLAACATLQDHLVGEINI-ADYILFYL-NRTGNYRYVDF-FNLDEPS-DDIVML 293
+ +LA +++D ++ +I ++I F + N+ + +F N DE + I +
Sbjct: 186 DKFTAQKLAFLGSIRDQVIEIEDIYYEFIKFLIENKKQKNLFEEFKINFDETDFEKISEI 245
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+AK KR + S+ + F +A I + FR G +G + LD
Sbjct: 246 IAK--------KRGVLLKSDEIDYF----RLANIVLNEFRNGKYGKIQLDE 284
>gi|336311698|ref|ZP_08566659.1| 50S ribosomal subunit maturation GTPase RbgA [Shewanella sp. HN-41]
gi|335864812|gb|EGM69881.1| 50S ribosomal subunit maturation GTPase RbgA [Shewanella sp. HN-41]
Length = 313
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 128/294 (43%), Gaps = 72/294 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++ + ++ +P + +LNK DL + +
Sbjct: 10 MHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAK-LRGDKPCIKLLNKSDLADPEVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + +EQ + I TLQ MV
Sbjct: 69 AQWIEYLEREQGVKATAIT----------------TLQ-----------------AAMVK 95
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+P++ + K VP D + RT M++G+PNVG
Sbjct: 96 KIPDICR---------------KLVPS-------RDKTEKDIRT-------MIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT++ Q +I+ + I + DTPGI P++DN
Sbjct: 127 KSTIINTLAGRVIAK-----TGNEPAVTKT---QQRINLRNGIVLSDTPGILWPKVDNEA 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVML 293
RLA ++D + ++A + Y + +NL E P DD+ +L
Sbjct: 179 SSYRLAVTGAIKDTAMEYEDVALFAAKYFLSAYPKEICERYNLSELPVDDMALL 232
>gi|375262989|ref|YP_005025219.1| GTPase YlqF [Vibrio sp. EJY3]
gi|369843416|gb|AEX24244.1| GTPase YlqF [Vibrio sp. EJY3]
Length = 314
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ Q ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISQ-IRGDKPVVKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + + +EQ+ + I T+ + V KI+ + ++ HR E+ N M+
Sbjct: 72 QLWIDHLEQEQNVKAMAITTS----EPQEVHKIMELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTIEYLAAQYPEKLKQ 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 VMLDR 344
+ L+R
Sbjct: 272 ITLER 276
>gi|308173567|ref|YP_003920272.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|384159412|ref|YP_005541485.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|384164153|ref|YP_005545532.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|384168459|ref|YP_005549837.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
gi|307606431|emb|CBI42802.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|328553500|gb|AEB23992.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|328911708|gb|AEB63304.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|341827738|gb|AEK88989.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
Length = 282
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 69/296 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN ++++ +++ +P +++LNK D ++
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKD-KPRIMLLNKADKADAAVT 68
Query: 61 SLIEEKVRKEQSHISE--VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + + H E + + + N +G+ +I+P+ +
Sbjct: 69 A-------QWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKE------------------- 102
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
L K KA I P R R +++G+PN
Sbjct: 103 ---------------LLKDKFDKMKAKGIRP----------RAIRA-------LIIGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 131 VGKSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + L E +DI L
Sbjct: 183 ELVGLRLAITGAIKDTIINLQDVAVFGLRFLEEHYPDRLKERYGLQEIPEDIAALF 238
>gi|334705475|ref|ZP_08521341.1| GTPase YlqF [Aeromonas caviae Ae398]
Length = 316
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I L +HM++ K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITELWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNFELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAK-----TGNEAGVTKS---QQRIKLDNHVILTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + L E + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERIKARYQLSELPETEIELLDLIA-R 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ F R ++ D + + I + FR G G + L+
Sbjct: 238 QRGFMRKGGLA--------DLHKASEILVNEFRSGMLGRISLE 272
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL + +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGETPVIKVLNKADLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +E+ I + T K L TL H M E+ M++
Sbjct: 69 ELWVAHMEQEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNFELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|400290291|ref|ZP_10792318.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921082|gb|EJN93899.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 146/350 (41%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+PF+ +N +L + V + +P +++LNK DL +
Sbjct: 11 MSKARRQVQENIKHVDFVTILVDARLPFSSQNPMLTKIVGD-KPRLMILNKADLADG--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------SRTKEWQDYFESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
G+ + IN+ S +KK G+A L ++ +++ + T+ M++G+P
Sbjct: 80 GITALA----INSKEQSAVKKIGEAAKKL-----MASKLSKLRERGIQKETLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KVAAVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D+L+ + + L Y R + F +L+E + +I+M L
Sbjct: 183 DETVGLKLALTGAIKDNLLPMDEVTIFGLNYFKENYPERLKERFKGIDLNEEAPEIIMSL 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K F+ +D +F++ R G G LD+
Sbjct: 243 T----QKLGFRDDYD-------------HFYSLFVKEVRDGKLGRYTLDK 275
>gi|50897998|gb|AAT86009.1| putative GTPase YlqF [Vibrio harveyi]
Length = 208
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 4 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 54
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 55 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 114
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 115 RYQIDELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 165
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 166 ITLELPEMITQELIEVEIE 184
>gi|428774581|ref|YP_007166369.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
gi|428688860|gb|AFZ48720.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium stanieri
PCC 7202]
Length = 281
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 146/344 (42%), Gaps = 81/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + +++ LK VD+V+EV D+R+P + L+ + + +P +L+LN+ D+I + +
Sbjct: 11 ISKAERQLKEQLKRVDVVLEVRDARIPLASHHPQLKDWIGD-KPRILILNREDMITNTLK 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E + E + FTN ++ KGV+ I N
Sbjct: 70 QEWQEWFKNEGEN---PFFTNAKD--GKGVKAI--------------------NKASQGC 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV +N R S +LP +V+G PNVG
Sbjct: 105 GVE-------VNKKRQSRG-------MLPR-----------------PVRAVVIGFPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K V KAGVTR + V+IS+ I +LD PGI +++N +
Sbjct: 134 KSALINRLLNR-----KIVASARKAGVTRQ-LQWVRISKD--IELLDAPGIIPLKLENQD 185
Query: 241 CGMRLAACATLQDHLVGEINIAD-YILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
++LA C + + +A ++ +N Y + + LD P D L + I
Sbjct: 186 DALKLAICEDIGEAAYENQEVAQKFVDLLVNLGTEYVLKERYGLD-PLD----LTGEEFI 240
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
FK A N D VAR ++ FRKG G V L+
Sbjct: 241 ----FKLAQTKYQN------DQERVARQILQDFRKGYLGKVSLE 274
>gi|417901371|ref|ZP_12545247.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|418599669|ref|ZP_13163149.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
gi|341845210|gb|EGS86412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|374396327|gb|EHQ67568.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
Length = 294
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 131/302 (43%), Gaps = 65/302 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LN
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILN---------- 58
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+K+ S+++E M+++ + + V
Sbjct: 59 -------KKDMSNLNE---------------------------MSKWEQFFIDKGYYPVS 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++A ++KK +A I T + + + M+VG+PNVG
Sbjct: 85 ----------VDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + ++ P D ++ A K
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQHDIERLKAHYKIEVPEDAEILAWFDAIGK 244
Query: 301 KK 302
K+
Sbjct: 245 KR 246
>gi|121533788|ref|ZP_01665615.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
gi|121307779|gb|EAX48694.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
Length = 287
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 133/344 (38%), Gaps = 75/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K I +HLK VD+VIE+ D+R+P + N ++ + LV NK +I
Sbjct: 10 MAKAYKMIREHLKLVDVVIELLDARIPLSSANPVIHE---------LVGNKPRVIALNKA 60
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E Q + Y R + V +
Sbjct: 61 DLAEP--------------------------------QWTERWIAEYRRQGL--AAVPLE 86
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V G ++I + ++ K KA+ + I R +++G+PNVG
Sbjct: 87 AVSGKGVKTLIVQVETAVRPKLKAL----EAKGIQGRTVR----------AIILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN L + + V G + GVTR +KI + + +LDTPG+ P+ D+ E
Sbjct: 133 KSSLINRLLGAAV-----VRTGDRPGVTRG-QQWIKIGKN--LELLDTPGVLWPKFDDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP-SDDIVMLLAKAAI 299
+LA + + + +A +L L R V+ F L P +D LL
Sbjct: 185 VAFKLAITGAIHEDVYDVEAVATKLLHMLRSCYTERLVERFKLSPPLPEDAAALLDLIGS 244
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ + V VR RI + FR G G LD
Sbjct: 245 KRGCLRAGGIVDHEKVR---------RIILTEFRTGKLGPFTLD 279
>gi|227893502|ref|ZP_04011307.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
gi|227864672|gb|EEJ72093.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
Length = 279
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 147/344 (42%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D+++EV D+R+P + RN ++++ V N +P +++LNK DL +
Sbjct: 11 MNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGN-KPHIIILNKADLADP--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L +E +K G K + L + H T + + +V
Sbjct: 67 NLTKEWAKK-----------------LSGANKYVLALDSL-------HNTNM-QKLISLV 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ K+ + A +S+ PT++ + + G+PN G
Sbjct: 102 KKASAEKTKKLEARGASN----------PTIR------------------IALAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + VG K GVT+ Q + I +LDTPGI P+ + E
Sbjct: 134 KSTVINRLVGRNVAE-----VGNKPGVTKG---QRWLKTSANIQVLDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LAA ++D + ++A ++L L V F L++ SD + LA A I
Sbjct: 186 VGYKLAAFGAIKDSVFHADDVALFVLENLREHYLKNLVKFSKLNQ-SD--IENLADADI- 241
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ M D + ++ RKG+ G + LDR
Sbjct: 242 -------LLAMTEKYGMRDDYDRFSLFMLQRLRKGAIGRITLDR 278
>gi|203284541|ref|YP_002222281.1| conserved hypothetical GTP-binding protein [Borrelia duttonii Ly]
gi|201083984|gb|ACH93575.1| conserved hypothetical GTP-binding protein [Borrelia duttonii Ly]
Length = 291
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 81/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L+ I+ ++K +IV+E+ D+R PF+ +N L++ ++N + +++LNK DL+ H
Sbjct: 20 MKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLV---H 76
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E I + + ++ + V+ TN K + Y V+V
Sbjct: 77 EGEILKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKKIKTYKEK----IKVLV 132
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+GVPNVGKSSIIN L V
Sbjct: 133 IGVPNVGKSSIINLL--------------------------------------------V 148
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GK S V K G T+++ +K++E I + D PGI ++N
Sbjct: 149 GKKS---------------TSVANKPGHTKNI-QILKVNED--INLFDMPGILWHNLENQ 190
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E +LA +++ ++ +A Y+L ++ + + +N+ S D + +L + A
Sbjct: 191 EIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNI--ISTDALKILEEFAT 248
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + + D ++I I+ +R+G FG ++LD
Sbjct: 249 IRGFINKKYGT---------DIESASKILIKEYREGKFGKIILD 283
>gi|363899265|ref|ZP_09325775.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|395209656|ref|ZP_10398750.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
gi|361959102|gb|EHL12398.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB1]
gi|394705287|gb|EJF12816.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB8]
Length = 292
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 147/346 (42%), Gaps = 79/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ L VD +IEV DSR P + RN + ++ + +++ NK DL +
Sbjct: 10 MAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKD-KARIMLFNKADLADPART 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E RK+ + E+ + R+ + KGV K++ ++ ++ + R + + + ++
Sbjct: 69 KSFMESFRKQGFYTMEM---DARSRSSVKGVSKLV--MESCAELLERKKQKGILSQSI-- 121
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
MV+G+PNV
Sbjct: 122 --------------------------------------------------KAMVLGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+ INA GKA G K GVT+ +KI + + +LDTPGI+ P+ +
Sbjct: 132 GKSTFINAYV------GKATAKTGNKPGVTKGA-QWIKIGKD--LQLLDTPGITWPKFER 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNR-TGNYRYVDFFNLDEPSDDIVMLLAKA 297
G+ LA ++ D ++ + Y+L YL R G+ + + +D + +
Sbjct: 183 EIVGLNLALIGSINDEILPIEELIFYLLKYLTRYYGSALVSRYGETLQGKEDALEAMDAI 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+K+ K+ D+ D +V+R+ ++ FR G G + L+
Sbjct: 243 AVKRACIKKGGDI---------DYTKVSRLILDDFRSGRLGRISLE 279
>gi|363888720|ref|ZP_09316098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
gi|361967341|gb|EHL20163.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
Length = 285
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 87/351 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I K++K V++V+E+ D+R P + +N + S+ N + ++VL K+DL +
Sbjct: 14 MKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDID-SMINGKSKLVVLTKKDLAD---- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EE + K S+ E KG++ +V V
Sbjct: 69 ---EENIGKFISYYKE-----------KGIK------------------------SVAVN 90
Query: 121 GVPNVGKSSIINAL---RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
G S +IN L + + +K KA I+ I M+VG+P
Sbjct: 91 ATKKSGISQLINILEQIKEENYQKNKAKGIIKKPLRI-----------------MIVGIP 133
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN + K+ G G+T+ SQ + K I +LDTPGI P+I+
Sbjct: 134 NVGKSTLINQIIGK-----KSAKTGNMPGITK---SQQWLKIKGDIELLDTPGILWPKIE 185
Query: 238 NLECGMRLAACATLQDHLVGEINI-ADYILFYL-NRTGNYRYVDF-FNLDEPS-DDIVML 293
+ +LA +++D ++ +I ++I F + N+ + +F N DE + I +
Sbjct: 186 DKFTAQKLAFLGSIRDQVIEIEDIYYEFIKFLIENKKQKNLFEEFEINFDETDFEKISEI 245
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+AK KR + S+ + F +A I + FR G +G + LD
Sbjct: 246 IAK--------KRGVLLKSDEIDYF----RLANIVLNEFRNGKYGKIQLDE 284
>gi|116492735|ref|YP_804470.1| GTP-binding protein YlqF [Pediococcus pentosaceus ATCC 25745]
gi|116102885|gb|ABJ68028.1| Ras superfamily GTP-binding protein YlqF [Pediococcus pentosaceus
ATCC 25745]
Length = 287
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 71/269 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH- 59
M + ++ +E+ LK VDIV E+ D+R+P + RN +++ +++ +P +L+L K DL + K
Sbjct: 11 MAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKS-KPHLLILTKADLADPKET 69
Query: 60 -ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ L K R E + I N + P+ + + IL Q I +
Sbjct: 70 KKWLDYYKSRNEYA-----IALNSKEPSTENI--ILKKTQEI-----------------L 105
Query: 119 VVGVPNVGKSSIINA-LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+ N I NA +RS M +G+P
Sbjct: 106 ADKLANKADRGIKNAEIRS-----------------------------------MCIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+++N H+ K G + GVT+ Q + + +Y+LDTPGI P+ +
Sbjct: 131 NVGKSTLLN-----HLVNKKVAITGDRPGVTKK---QQWLRSRRGLYLLDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYIL 266
+ G +LA ++D+L ++ Y L
Sbjct: 183 DQNVGNKLAFTGAIKDNLFANDDVVIYGL 211
>gi|424810635|ref|ZP_18235980.1| ribosomal biogenesis GTPase [Vibrio mimicus SX-4]
gi|342322201|gb|EGU17994.1| ribosomal biogenesis GTPase [Vibrio mimicus SX-4]
Length = 302
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 105 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 155
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + + + + +DE
Sbjct: 156 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKERYQIDEL 215
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 216 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 264
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 1 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 60 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus
champanellensis 18P13]
Length = 290
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 140/346 (40%), Gaps = 93/346 (26%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I +L VD V+E+ D+R+P + RN + + + +P +L+LNK D+ + E+
Sbjct: 21 ITANLSLVDAVVEILDARIPVSSRNPEMDR-LTGGKPRLLILNKSDMAD--------ERT 71
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
++ H R C V
Sbjct: 72 TQQWLH-------RLRRSGCAAV------------------------------------- 87
Query: 128 SSIINALRSSHMKKGKAVPIL-PTLQHI-SDNMTRYHRTEVYNTT--VMVVGVPNVGKSS 183
+ K GK V P L+ + + + ++ + N VMVVG+PNVGKSS
Sbjct: 88 --------AMDCKSGKGVKQFHPALRELLKEQIAQWRAKGLVNRPIHVMVVGIPNVGKSS 139
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM 243
IN M GK V + GVTR+ VK+ + + +LDTPG+ P+ D+ +
Sbjct: 140 FIN-----KMAGGKRAKVEDRPGVTRT-KQWVKLGDG--VEMLDTPGVLWPKFDDQQAAQ 191
Query: 244 RLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIVMLLAKA 297
RLA + D ++ +A +L YL+ T Y+ NL E ++ ++L
Sbjct: 192 RLAFTGAINDDVLDIEALAMLLLEYLHEAYPQALTARYK----INLPEGTEGRILL---- 243
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ KR VS V +T A ++ FR G G + L+
Sbjct: 244 --EELGRKRGMLVSGGEV----NTERAAITLLDEFRSGKLGRITLE 283
>gi|350533429|ref|ZP_08912370.1| GTPase YlqF [Vibrio rotiferianus DAT722]
Length = 314
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 28/200 (14%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 220
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +DE P DI M+ ++ +R + V D +V+ I + R+G+ G
Sbjct: 221 RYQIDELPQSDIEMM------EEIGRRRGALRAGGRV----DLHKVSEILLHELRQGTLG 270
Query: 339 SV------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 271 QITLELPEMITQELIEVEIE 290
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + I T+ ++ VQKI+ ++ ++ HR E+ N M+
Sbjct: 72 QVWIDHFEKEHNVKAIAITTSQQSE----VQKIMELVRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|384045195|ref|YP_005493212.1| GTPase family protein [Bacillus megaterium WSH-002]
gi|345442886|gb|AEN87903.1| GTPase family protein [Bacillus megaterium WSH-002]
Length = 288
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 136/295 (46%), Gaps = 66/295 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D + +
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVN-KPRIVLLNKVDKADPRVT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ ++ KEQ + I KG+++I+ + + + ++ R
Sbjct: 69 QQWLD--YYKEQGIYALAIDAQA----GKGMKQIVSSSKELLQE--KFDR---------- 110
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+R+ +KK +A+ M+VG+PNV
Sbjct: 111 --------------MRAKGVKKPRAI------------------------RAMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L S + K G + GVT++ +K+ + + +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLASKKIAK-----TGDRPGVTQA-QQWIKVGNE--LELLDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G +LA ++D ++ ++A Y L +L+ + ++L E +DIV L
Sbjct: 185 TVGYKLATTGAIKDTILNMQDVAVYALRFLSSHYPEQLKQRYDLSEIPEDIVELF 239
>gi|408410159|ref|ZP_11181400.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
gi|407875678|emb|CCK83206.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
Length = 283
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 141/348 (40%), Gaps = 84/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E+ L +D+V+E+ D+R+P + RN ++++ V N +P +++LNK D
Sbjct: 11 MNKARNQLEEKLSLIDVVVEILDARIPLSSRNPMIEELVGN-KPHIIILNKAD------- 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + T +G + ++ M H T V ++
Sbjct: 63 -------------LADPVMTKLWQKKLQGPRTLVMA-------MDAQHNTNVQALVTLI- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S + L ++G + PI+ + +VGVPN G
Sbjct: 102 ---KKASSEKVKKLE----ERGASNPIV---------------------RIALVGVPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L ++ G K GVT+ Q + I ILDTPGI P+ ++ +
Sbjct: 134 KSTIINRLVGHNV-----AITGDKPGVTKG---QAWLKTNYGIQILDTPGILWPKFEDQD 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS----DDIVMLLAK 296
G +LAA ++D + ++A +++ L + F N + D +LLA
Sbjct: 186 VGYKLAAFGAIKDTIFHADDVALFVIRLLKQYYPAYLAKFANCSKEKIAAISDTDLLLAL 245
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+N +R D + ++ RKG G + LDR
Sbjct: 246 -------------TQNNGMR--DDYDRFSLFMLQRLRKGKLGRITLDR 278
>gi|258623442|ref|ZP_05718445.1| hypothetical protein VMD_34910 [Vibrio mimicus VM573]
gi|258584257|gb|EEW09003.1| hypothetical protein VMD_34910 [Vibrio mimicus VM573]
Length = 314
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + + + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|51892611|ref|YP_075302.1| hypothetical protein STH1473 [Symbiobacterium thermophilum IAM
14863]
gi|51856300|dbj|BAD40458.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 286
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 74/342 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++ VD+V+E+ D+R P RN L V + +P VL+LNK DL +
Sbjct: 9 MAKARRILQENAPLVDVVLEIVDARCPLASRNPDLMALVAH-KPQVLILNKADLADPAAT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E++ E V +
Sbjct: 68 RLWVERL------------------------------------------NEPGRPAVALD 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V G ++ A+R + P L+ + R R VM VG+PNVG
Sbjct: 86 AVRGTGAREVLAAIRRAFA---------PVLRAWTAK-GRKPRP----ARVMAVGIPNVG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN L + + PVG K GVTR ++I + + +LD PGI +P+ ++
Sbjct: 132 KSSAINRLVGA-----RRAPVGDKPGVTRG-KQWIRIGKD--VELLDMPGILVPKFEDQR 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LAA ++D + + +A+++L + + + + L + V L AI
Sbjct: 184 DGLLLAATGAIKDEVFDQREVANHLLHLIWESLGAAVAERYGLTRLDPEPVANL--EAIG 241
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
+ F+ D A++ + FR+G G V L
Sbjct: 242 R--FRGLLRAGEQV-----DLDAAAQLVLREFREGRLGRVTL 276
>gi|423100352|ref|ZP_17088059.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
gi|370793353|gb|EHN61191.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
Length = 288
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 142/343 (41%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + R R +I +K +
Sbjct: 11 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKR--------RVIILNKAD 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E+ ++ + +E K LP + + + E +M
Sbjct: 63 TADEKTTKEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM-- 105
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ LRS MK +A+ M++G+PNVG
Sbjct: 106 -------AEKFERLRSKGMKP-RAI------------------------RAMILGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++ E
Sbjct: 134 KSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D L+ IA Y L +L + R ++ +++ S++ + LA A K
Sbjct: 186 IGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLKVEKVSENPIETLAFIAEK 245
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R D PD A + R+ G + D
Sbjct: 246 RGLLDRYND---------PDYSRTAETVVREIRQQKLGRMSFD 279
>gi|258625109|ref|ZP_05720027.1| hypothetical protein VMB_13280 [Vibrio mimicus VM603]
gi|262173702|ref|ZP_06041379.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio mimicus
MB-451]
gi|449145266|ref|ZP_21776074.1| hypothetical protein D908_10629 [Vibrio mimicus CAIM 602]
gi|258582611|gb|EEW07442.1| hypothetical protein VMB_13280 [Vibrio mimicus VM603]
gi|261891060|gb|EEY37047.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio mimicus
MB-451]
gi|449079074|gb|EMB50000.1| hypothetical protein D908_10629 [Vibrio mimicus CAIM 602]
Length = 314
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+ + I +
Sbjct: 117 NIRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINLQNGIVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP 286
DTPGI P+++N G RLAA ++D + +A Y + YL + + + + +DE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKERYQIDEL 227
Query: 287 SDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 228 PETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 276
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 72 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|417896133|ref|ZP_12540100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
gi|341841034|gb|EGS82506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
Length = 294
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 141/343 (41%), Gaps = 73/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LNK K
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILNK------KDM 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + E + EQ I KG Y+ V
Sbjct: 63 SNLNEMSKWEQFFID------------KG-----------------YYPVSV-------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+A ++KK +A I T + + + M+VG+PNVG
Sbjct: 86 -----------DAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + + E S+D ++ AI
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKAHYKI-EVSEDAEIIAWFDAIG 243
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K KR N + D V + I R G+ D
Sbjct: 244 K---KRGLIRRGNEI----DYEAVIELIIYDIRNAKIGNYCFD 279
>gi|333368596|ref|ZP_08460773.1| ribosome biogenesis GTP-binding protein YlqF [Psychrobacter sp.
1501(2011)]
gi|332976790|gb|EGK13620.1| ribosome biogenesis GTP-binding protein YlqF [Psychrobacter sp.
1501(2011)]
Length = 323
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 136/343 (39%), Gaps = 75/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I++ + +D+VIEV D+R+PF+ N PMV DL N+KH
Sbjct: 14 MNKARNEIKEIMPEMDVVIEVIDARIPFSSEN-----------PMVA-----DLRNNKHG 57
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K V KIL ++ ++ + +
Sbjct: 58 G-------------------------QKPVIKIL-------------NKADLADPEMTAA 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ ++ + S + A+ K I+ +H+ N R V+++G+PNVG
Sbjct: 80 WIDHLEQQSQVKAIACDDNKANDVQKIIQLCKHLVPNKVGTGR----QIKVLIMGIPNVG 135
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT+S +KI ++Y DTPG+ P+I+N
Sbjct: 136 KSTLINTLAGRSIAK-----TGDEPAVTKS-QQLIKIDNDIMLY--DTPGMLWPKIENPN 187
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA ++D ++A Y YL + + +DE A
Sbjct: 188 SGFRLAATGGIKDTAFDFSDVAGYTAEYLIKAYPELLKARYKIDELPQTDWEFFEMAGRN 247
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + K+ V DT ++ I I R G G + L+
Sbjct: 248 RGFLKKGGVV---------DTYRMSEILINELRSGQLGRITLE 281
>gi|126134247|ref|XP_001383648.1| hypothetical protein PICST_43609 [Scheffersomyces stipitis CBS
6054]
gi|126095797|gb|ABN65619.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 369
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 62/288 (21%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+D+V+EV DSR P + N L + + +VL +K+DL +L +RK +
Sbjct: 37 IDLVLEVRDSRAPLSTTNVLFDRVLAQKEKIVLY-SKKDL-----SALKSSVLRKWHESV 90
Query: 75 SEVIFT-NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 133
+E T +CR+ K QK++ ++ MT +M++G+PNVGKS+++N
Sbjct: 91 NEKHLTIDCRSR--KDAQKVIDLIKQRYFEMTP---PPPLGLRLMIIGMPNVGKSTLVNT 145
Query: 134 LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 193
LR VG+ N +++ +
Sbjct: 146 LRE-------------------------------------VGLSN-------DSVGAIST 161
Query: 194 KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQD 253
K+ K G + GVT++ +++ +P I + DTPG+ LP + ++E + L +
Sbjct: 162 KRRKVARTGGQPGVTKNTSEIIRLCREPDILVHDTPGVFLPTVKDIETMLALGMVGCVHT 221
Query: 254 HLVGEINIADYILFYLN---RTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
+ + ADY+L+ LN TG+ +Y ++ N P++ I LL A
Sbjct: 222 SFIDPVIQADYLLYLLNLQDPTGS-KYAEYIN--RPTNSIDELLYHIA 266
>gi|119953421|ref|YP_945630.1| ribosomal biogenesis GTPase [Borrelia turicatae 91E135]
gi|119862192|gb|AAX17960.1| GTP-binding protein [Borrelia turicatae 91E135]
Length = 305
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 152/354 (42%), Gaps = 101/354 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L I+++L+ +IV+E+ D+R P + +N L ++ ++N R +++LNK DL
Sbjct: 29 MKRALDLIQENLQRTNIVLEILDARAPLSSQNPLTEKIIKNSNRNKIILLNKSDLAQ--- 85
Query: 60 ESLIEEKVRKEQSHI----SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT 115
EE++ K + + + V+ TN KG++K I DN+ + + T
Sbjct: 86 ----EEEILKWREYFETLGNNVLITNIYK---KGMKK------QIIDNIIKIANVKKIKT 132
Query: 116 -----TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170
V+V+GVPNVGKSSIIN L
Sbjct: 133 YEEKIKVLVIGVPNVGKSSIINLL------------------------------------ 156
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
VGK S V K G T+++ +KI+E+ I I D PG
Sbjct: 157 --------VGKKS---------------TSVANKPGHTKNIQI-LKINER--INIFDMPG 190
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN-LDEPSDD 289
I +++ E +LA +++ ++ +A Y+L ++ + ++ +N + S +
Sbjct: 191 ILWHNLEDQEIAKKLAILDMIKNEIIDNTELALYLLKKMHINNKTKLLNKYNIISTNSLE 250
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I+ AK R F + + D ++I I+ +R+G FG ++LD
Sbjct: 251 ILEEFAKT--------RGFINKKHKI----DIERASKILIKEYREGKFGKIILD 292
>gi|224541329|ref|ZP_03681868.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
15897]
gi|224525766|gb|EEF94871.1| ribosome biogenesis GTP-binding protein YlqF [Catenibacterium
mitsuokai DSM 15897]
Length = 292
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 109/254 (42%), Gaps = 69/254 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH- 59
M + ++IE LK VDIVIE+ D+R PF+ N L ++N +P + +L K+DL + K
Sbjct: 18 MAKAQREIESKLKLVDIVIELVDARAPFSTHNPELDHMIKN-KPRLYILTKKDLADPKAT 76
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E+LI E R+ S I+ + N K +KI+ NM RY E
Sbjct: 77 EALIAEFKRQGHSAIAVDL------KNFKEEKKIV--------NMCRYQLKEK------- 115
Query: 120 VGVPNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
R +G K PI +V G+PN
Sbjct: 116 ---------------REKEAARGLKPKPI----------------------RALVAGIPN 138
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + K KA VG K GVT+ +Q I + DTPG+ P+ +
Sbjct: 139 VGKSTFINKI-----AKRKAAAVGNKPGVTK---AQQIIRVDKDFELFDTPGVLEPKFTD 190
Query: 239 LECGMRLAACATLQ 252
+ M +A C +++
Sbjct: 191 INKAMNVALCGSIK 204
>gi|409349423|ref|ZP_11232890.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
gi|407878170|emb|CCK84948.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
Length = 283
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 141/348 (40%), Gaps = 84/348 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E+ L +D+V+E+ D+R+P + RN ++++ V N +P +++LNK D
Sbjct: 11 MNKARNQLEEKLSLIDVVVEILDARIPLSSRNPMIEELVGN-KPHIIILNKAD------- 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ + T +G + ++ M H T V ++
Sbjct: 63 -------------LADPVMTKLWQKKLQGPRTLVMA-------MDAQHNTNVQALVTLI- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S + L ++G + PI+ + +VGVPN G
Sbjct: 102 ---KKASSEKVKKLE----ERGASNPIV---------------------RIALVGVPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L ++ G K GVT+ Q + I ILDTPGI P+ ++ +
Sbjct: 134 KSTIINRLVGHNV-----AITGDKPGVTKG---QAWLKTNYGIQILDTPGILWPKFEDQD 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS----DDIVMLLAK 296
G +LAA ++D + ++A +++ L + F N + D +LLA
Sbjct: 186 VGYKLAAFGAIKDTIFHADDVALFVIRLLKQYYPAYLAKFANCSKEKIAAISDTDLLLAL 245
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+N +R D + ++ RKG G + LDR
Sbjct: 246 -------------TQNNGMR--DDYDRFSLFMLQRLRKGKLGRITLDR 278
>gi|28900567|ref|NP_800222.1| ribosomal biogenesis GTPase [Vibrio parahaemolyticus RIMD 2210633]
gi|153836478|ref|ZP_01989145.1| GTP-binding protein [Vibrio parahaemolyticus AQ3810]
gi|260365447|ref|ZP_05777984.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus K5030]
gi|260877512|ref|ZP_05889867.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus AN-5034]
gi|260897547|ref|ZP_05906043.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus Peru-466]
gi|260901749|ref|ZP_05910144.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus AQ4037]
gi|417322355|ref|ZP_12108889.1| GTPase YlqF [Vibrio parahaemolyticus 10329]
gi|433659826|ref|YP_007300685.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
parahaemolyticus BB22OP]
gi|28808947|dbj|BAC62055.1| putative GTPase YlqF [Vibrio parahaemolyticus RIMD 2210633]
gi|149750380|gb|EDM61125.1| GTP-binding protein [Vibrio parahaemolyticus AQ3810]
gi|308087142|gb|EFO36837.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus Peru-466]
gi|308090893|gb|EFO40588.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus AN-5034]
gi|308108929|gb|EFO46469.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus AQ4037]
gi|308114303|gb|EFO51843.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio
parahaemolyticus K5030]
gi|328470509|gb|EGF41420.1| GTPase YlqF [Vibrio parahaemolyticus 10329]
gi|432511213|gb|AGB12030.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio
parahaemolyticus BB22OP]
Length = 314
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEVGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL R +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPERLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 272 ITLELPEMITQELIEVEIE 290
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISK-IRGEKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + + KEQ+ + I T+ + V KI+ + ++ HR EV N M+
Sbjct: 72 QLWIDHLEKEQNVKAMAITTS----EPQEVHKIMELCRKLAP-----HREEVGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|326389497|ref|ZP_08211064.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
gi|325994502|gb|EGD52927.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
Length = 277
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + D++ +K
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDID----------------DIVKNKKR 52
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ K I+++ + + V+ +++T + E+ T V
Sbjct: 53 IILLNKADLADDVITDLWIEYFKEKGIEAVK---------VNSITGFGLKEINEATQRVC 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ K K ++P L+ M+VGVPNVG
Sbjct: 104 ---------------QDILDKKKQKGMIPRLRG------------------MIVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P +LDTPGI P+ D+ +
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRA-LHWIKT---PYFDLLDTPGILWPKFDDKK 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + +D+ D+ LL +
Sbjct: 182 VGIMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVDEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---RKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGKISLER 276
>gi|392331467|ref|ZP_10276082.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
gi|391419146|gb|EIQ81958.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
Length = 282
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 85/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADAART 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K E I + + P K V + L ++D + R
Sbjct: 70 K--EWKAYYESQGIKTLAINSKEQPTVKKVTEAAKEL--MADKIQR-------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LR ++K E T M++G+PN G
Sbjct: 112 -------------LRDRGIQK-----------------------ETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFEDEL 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKA 297
G++LA ++D ++ + + L Y R F L+E + +I+M L +
Sbjct: 186 VGLKLALTGAIKDQVLPMDEVTIFGLNYFKEYYPNRLTKRFKNIPLEEEAPEIIMSLTRQ 245
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
FK +D R + +F++ R G G LD+
Sbjct: 246 L----GFKDDYD------RFY-------TLFVKEVRDGKLGQYTLDQ 275
>gi|56419739|ref|YP_147057.1| ribosomal biogenesis GTPase [Geobacillus kaustophilus HTA426]
gi|56379581|dbj|BAD75489.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 286
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 125 ALIVGIPNVGKSTLINRLAGRHIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 176
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ + G +LA ++D ++ ++A Y L +L+ R + + LD+ DDI
Sbjct: 177 ILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLSTHYPNRLAERYGLDDIPDDI 236
Query: 291 VMLL 294
V L
Sbjct: 237 VALF 240
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +D+ E+ D+R+P + RN ++ + + +P +++LNK D+ + E
Sbjct: 11 MAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDE-ILGQKPRLILLNKADMAD---E 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYN--- 114
++ E+ +R +Q ++ I + GV++I + + D + + N
Sbjct: 67 AVTEQWIRYFHDQGRLALPIDAQ----SGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRP 122
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKK 141
++VG+PNVGKS++IN L H+ K
Sbjct: 123 VRALIVGIPNVGKSTLINRLAGRHIAK 149
>gi|117620997|ref|YP_857295.1| ribosomal biogenesis GTPase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562404|gb|ABK39352.1| GTP-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 316
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I L +HM++ K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITELWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNLELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + L E + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVFDYADIAMFAADYFIKAYPERIQTRYQLSELPETEIELLELIA-R 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ F R ++ D + + I + FR G G + L+
Sbjct: 238 QRGFMRKGGLA--------DLHKASEILVNEFRSGLLGRISLE 272
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL + +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +E+ I + T K L TL H M E+ M++
Sbjct: 69 ELWVAHMEQEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNLELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|379011964|ref|YP_005269776.1| putative GTP-binding protein [Acetobacterium woodii DSM 1030]
gi|375302753|gb|AFA48887.1| putative GTP-binding protein [Acetobacterium woodii DSM 1030]
Length = 280
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 148/349 (42%), Gaps = 92/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+ LK +++VIEV D+R+P + +N + Q N + +L+LNK DL + +
Sbjct: 16 MAKANREIKDKLKLINVVIEVVDARLPASSKNPEINQYTWN-KQHILLLNKADLADPE-- 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + + N K +QKI+ + D R +T++ T
Sbjct: 73 --------------VSLDWIDWYQKNTK-IQKIV-----LYDAFDRRMKTDLVRT----- 107
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
I AL + + K +V G+PNVG
Sbjct: 108 ----------IQALNTKEKAQVKC---------------------------LVCGIPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN+L K +G K GVT+ Q +S + +LDTPGI P+ ++
Sbjct: 131 KSTVINSLIGK-----KKTQIGNKPGVTKG---QQWLSTPDHLMLLDTPGILWPKFEDPL 182
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA +++D + + NIA +L YL + ++ P D + + K A++
Sbjct: 183 VGLHLAWLGSIKDTIYEKENIAADLLKYL--------ITYY----PDD--LEAIYKIALE 228
Query: 301 KKWFKRAFDVSSNSVRMFPDTGE--VAR---IFIEHFRKGSFGSVMLDR 344
K F+ + S + GE AR + + F+ G G + L+R
Sbjct: 229 DKNLTEVFEAIAKSRGLLIKGGEYDYARTSVLILNDFKNGRIGRITLER 277
>gi|187918499|ref|YP_001884062.1| ribosomal biogenesis GTPase [Borrelia hermsii DAH]
gi|119861347|gb|AAX17142.1| GTP-binding protein [Borrelia hermsii DAH]
Length = 283
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 81/344 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI-RPMVLVLNKRDLINSKH 59
M R L I+ +LK +IV+E+ D+R P + +N L ++ ++N + +++LNK DL+ ++
Sbjct: 12 MKRALDLIQANLKRTNIVLEILDARAPMSSKNPLTEKIIKNSNKDKIILLNKSDLVKTRE 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E ++ + V+ TN K ++I+ ++ I++ + +T V+V
Sbjct: 72 ILKWREYF---ETLGNNVLITNIYKKGMK--KQIIDNIKKIAN--VKKIKTYTEKIKVLV 124
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+GVPNVGKSSIIN L V
Sbjct: 125 IGVPNVGKSSIINLL--------------------------------------------V 140
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GK S V K G TR++ +K++E+ I I D PGI +++
Sbjct: 141 GKKS---------------TSVANKPGHTRNI-QILKVNEE--INIFDMPGILWHNLEDQ 182
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E +LA +++ ++ +A Y+L ++ + ++ +++ S D + +L + A
Sbjct: 183 EIAKKLAILDMIKNEIIDNTELALYLLKEMHINNKNKLLNKYSI--KSTDSLQILEEFA- 239
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R F +++ D ++I I+ +R+G FG ++LD
Sbjct: 240 ----RTRGFINKKHAM----DIERASKILIKEYREGKFGKIILD 275
>gi|261419404|ref|YP_003253086.1| ribosomal biogenesis GTPase [Geobacillus sp. Y412MC61]
gi|297530621|ref|YP_003671896.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|319766219|ref|YP_004131720.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|448237360|ref|YP_007401418.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
gi|261375861|gb|ACX78604.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC61]
gi|297253873|gb|ADI27319.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|317111085|gb|ADU93577.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|445206202|gb|AGE21667.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
Length = 288
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 127 ALIVGIPNVGKSTLINRLAGRHIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 178
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ + G +LA ++D ++ ++A Y L +L+ R + + LD+ DDI
Sbjct: 179 ILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLSTHYPNRLAERYGLDDIPDDI 238
Query: 291 VMLL 294
V L
Sbjct: 239 VALF 242
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +D+ E+ D+R+P + RN ++ + + +P +++LNK D+ + E
Sbjct: 13 MAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDE-ILGQKPRLILLNKADMAD---E 68
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYN--- 114
++ E+ +R +Q ++ I + GV++I + + D + + N
Sbjct: 69 AVTEQWIRYFHDQGRLALPIDAQ----SGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRP 124
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKK 141
++VG+PNVGKS++IN L H+ K
Sbjct: 125 VRALIVGIPNVGKSTLINRLAGRHIAK 151
>gi|335044555|ref|ZP_08537580.1| putative GTPase [Methylophaga aminisulfidivorans MP]
gi|333787801|gb|EGL53685.1| putative GTPase [Methylophaga aminisulfidivorans MP]
Length = 318
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 138/343 (40%), Gaps = 80/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K++ + L VD++IEV D+R+PF+ +N +L + ++ +P + +LNK DL +
Sbjct: 23 MHKASKEMREILPQVDLIIEVLDARIPFSSQNPMLAE-IRKDKPCIKLLNKHDLADVT-- 79
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ +Y E + T+ +V
Sbjct: 80 ---------------------------------------ITERWQQYFEQENHTKTLTMV 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G + ++ R K VP + NT M++G+PNVG
Sbjct: 101 AQQQEGIADLLTLCR-------KMVP------------AKAEAGRPINT--MIMGIPNVG 139
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN+L + K G + +T+ Q +I + + + DTPG+ P ++N
Sbjct: 140 KSTLINSLAGRQIAK-----TGNEPAITKM---QQRIRLEQGVVLHDTPGVLWPNLENPH 191
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLA +++ + +IA Y + YL + + F LD ++ + + IK
Sbjct: 192 GGYRLAVTGAIKETAIDNDDIALYAIEYLMQAYPEQLKQRFGLDTLTEYPLENMEAIGIK 251
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + V D A+I + R G G + +
Sbjct: 252 RGCLRSGGKV---------DLDRTAKIILTEIRAGMLGRITWE 285
>gi|323347180|gb|EGA81455.1| Mtg1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 270
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 137/308 (44%), Gaps = 63/308 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 12 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 71
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 72 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 127
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 128 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 154
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 155 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 200
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 201 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 260
Query: 291 VMLLAKAA 298
+ KA+
Sbjct: 261 YDVFKKAS 268
>gi|402839395|ref|ZP_10887885.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
gi|402270297|gb|EJU19564.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
Length = 285
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 87/351 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I K++K V++V+E+ D+R P + +N + S+ N + ++VL K+DL +
Sbjct: 14 MKKTREEIIKNIKLVNLVVEIVDARAPISSKNPDID-SMINGKSKLVVLTKKDLAD---- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EE + K S+ E KG++ +V +
Sbjct: 69 ---EEDMGKFISYYKE-----------KGIK------------------------SVAIN 90
Query: 121 GVPNVGKSSIINAL---RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
G S +IN L + + +K KA I+ I M+VG+P
Sbjct: 91 STKKTGISPLINILEQIKEENYQKNKARGIIKKPLRI-----------------MIVGIP 133
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN + K+ G G+T+ SQ + K I +LDTPGI P+I+
Sbjct: 134 NVGKSTLINQIIGK-----KSAKTGNTPGITK---SQQWLKIKGDIELLDTPGILWPKIE 185
Query: 238 NLECGMRLAACATLQDHLVGEINI-ADYILFYL-NRTGNYRYVDF-FNLDEPS-DDIVML 293
+ +LA +++D ++ +I ++I F + N+ + +F N DE + I +
Sbjct: 186 DKITAQKLAFLGSIRDQVIEIEDIYYEFIKFLIENKKQKNLFEEFEINFDETDFEKISEI 245
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+AK KR + +N V F +A I + FR G +G + LD
Sbjct: 246 IAK--------KRGVLLKNNEVDYF----RLANIVLNEFRNGKYGKIQLDE 284
>gi|386086556|ref|YP_006002430.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387909787|ref|YP_006340093.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
gi|312278269|gb|ADQ62926.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387574722|gb|AFJ83428.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
Length = 284
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 91/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKILILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
DN T+ RT + + +
Sbjct: 66 -----------------------------------------DNRTKEWRTYFESQGIKTL 84
Query: 121 GVPNVGKSS---IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+ + +S+ I +A +S +K +Q + + R + E T M++G+P
Sbjct: 85 AINSKEQSTVKLITDAAKSLMTEK---------IQRLRE---RGIQKETLRT--MIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D L+ + + L Y R + F +L+E + +I+M +
Sbjct: 183 DELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D N +F++ R G G LD
Sbjct: 243 T----RKLGFREDYDRFYN-------------LFVKDVRDGKLGRYTLD 274
>gi|403069205|ref|ZP_10910537.1| hypothetical protein ONdio_06380 [Oceanobacillus sp. Ndiop]
Length = 283
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
+ M+VG+PNVGKS++IN L + + K G + G+T+ Q+ I K +LDT
Sbjct: 121 SRAMIVGIPNVGKSTLINRLANKKIAK-----TGDRPGITKQ---QLWIKVKKDFELLDT 172
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD 288
PGI P+ ++ G RLAA T++D L+ +I +++ Y+ + + + +D D
Sbjct: 173 PGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDITAFVIDYMREYYPEQLEERYTIDRTMD 232
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
D++ + AI K+ + A + N + +V+ + I+ R G G + L+
Sbjct: 233 DMLEIF--NAIGKQ--RGALESGGNV-----NFDKVSDVVIQDLRTGRLGHITLE 278
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH- 59
M + +++E+ LK VD V+E+ D+R P + +N +LQQ +Q+ M+ VL K+DL + +
Sbjct: 10 MAKARREVEEKLKLVDFVMELVDARAPLSSQNPMLQQVLQHKSKMI-VLMKKDLADPRET 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E I KE I+ V N + N V ++ L + + + M+
Sbjct: 69 EKWINHFREKEVPAIA-VDVNNKADINR--VIQMAKELGQVKMEKLLKKGIKPRPSRAMI 125
Query: 120 VGVPNVGKSSIINALRSSHMKK 141
VG+PNVGKS++IN L + + K
Sbjct: 126 VGIPNVGKSTLINRLANKKIAK 147
>gi|375008175|ref|YP_004981808.1| ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287024|gb|AEV18708.1| Ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 288
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 127 ALIVGIPNVGKSTLINRLAGRHIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 178
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ + G +LA ++D ++ ++A Y L +L+ R + + LD+ DDI
Sbjct: 179 ILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLSTHYPNRLAERYGLDDIPDDI 238
Query: 291 VMLL 294
V L
Sbjct: 239 VALF 242
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +D+ E+ D+R+P + RN ++ + +P +++LNK D+ + E
Sbjct: 13 MAKAKREVQEKLKLIDVAFELLDARLPMSSRNPMID-DILGQKPRLILLNKADMAD---E 68
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYN--- 114
++ E+ +R +Q ++ I + GV++I + + D + + N
Sbjct: 69 AVTEQWIRYFHDQGRLALPIDAQ----SGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRP 124
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKK 141
++VG+PNVGKS++IN L H+ K
Sbjct: 125 VRALIVGIPNVGKSTLINRLAGRHIAK 151
>gi|401624324|gb|EJS42386.1| mtg1p [Saccharomyces arboricola H-6]
Length = 369
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 15/115 (13%)
Query: 171 VMVVGVPNVGKSSIINALRS-------SHM--KKGKAVPVGPKAGVTRSVMSQVKISEKP 221
++ G+PNVGKS++IN+LR+ HM K+ K G +AGVTR+ +K++ K
Sbjct: 153 ALITGMPNVGKSTLINSLRAIFHEHNQEHMGSKRKKVARTGAEAGVTRTTSEVIKVASKT 212
Query: 222 L-----IYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
IY++DTPGI +P RI + + LA C +++ +L+ I ADY+L+ +N
Sbjct: 213 AESKNEIYLIDTPGIGVPGRISDHNRMLGLALCGSVKTNLIDPIFQADYLLYLMN 267
>gi|407718252|ref|YP_006795657.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
gi|407242008|gb|AFT81658.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
Length = 284
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 93/351 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++L+ VD+V E+ D+R+P + RN + + + + +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLRLVDVVFELVDARIPSSSRNPEVDKLIGS-KPRLLIMTKADLADPDQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + E H V+ + R+P P L +T+ R V
Sbjct: 71 RLWKAYFESE-GHT--VLVLDTRDPKT-------PQL------VTKAARRAV-------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + + + +G I D R M+ G+PNVG
Sbjct: 107 -----------SSKKEAQLARG-----------IHDQPIR----------AMISGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQS 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR---YVDFFNL-----DEPSDDIVM 292
GM+LA ++D + + + A +++ + NYR +D ++L DE D++ +
Sbjct: 187 IGMKLALTGAVKDAIFAKDDAALFLIAFFR---NYRPKAIIDRYHLTTEIFDE--DNVQI 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LL A +K FK +D +S RI I+ RKG GS LD
Sbjct: 242 LL--AITEKLGFKDDYDKASE------------RILID-LRKGKLGSFTLD 277
>gi|345017764|ref|YP_004820117.1| hypothetical protein Thewi_1411 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033107|gb|AEM78833.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1411
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 277
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + D++ +K
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDID----------------DIVKNKKR 52
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ K I+++ + + V+ +++T + E+ T V
Sbjct: 53 IILLNKADLADDVITDLWIEYFKEKGIEAVK---------VNSITGFGLKEINEATQRVC 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ K K ++P L+ M+VGVPNVG
Sbjct: 104 ---------------QDILDKKKQKGMIPRLRG------------------MIVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P +LDTPGI P+ D+ +
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRA-LHWIKT---PYFDLLDTPGILWPKFDDKK 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + +D+ D+ LL +
Sbjct: 182 VGVMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVDEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---RKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGKISLER 276
>gi|149377605|ref|ZP_01895343.1| GTP-binding protein [Marinobacter algicola DG893]
gi|149358078|gb|EDM46562.1| GTP-binding protein [Marinobacter algicola DG893]
Length = 295
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
K + A+ +H ++ +A+ IL ++ MT H + VM++G+PNVGKS++IN
Sbjct: 77 KERGVRAITMTHNQRAEALDIL----RLAGEMTPDHDRQKRALRVMILGIPNVGKSTLIN 132
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
M A G + VTR+ +K+ + L+Y DTPG P++ CG RLA
Sbjct: 133 T-----MAGRPAAKTGNEPAVTRA-QQAIKLPDNVLLY--DTPGFLWPKLSPEACGYRLA 184
Query: 247 ACATLQDHLVGEINI----ADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302
++ ++ ++ ADY+L RY +E D + L+ A K++
Sbjct: 185 ISGAIRSAVIEFEDVALFEADYLLDAYPELAMARY----GFEEKPRDGLALMDGIAEKRR 240
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R PD +V+ I + FR G G + L+
Sbjct: 241 FLGRGG---------VPDLHKVSEILLNEFRSGKLGRISLE 272
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I+K + +D++IEV D+R+PF+ N L+ +++ P++ VLNKRDL +
Sbjct: 10 MHKARKEIKKVMPQMDLIIEVVDARLPFSSENPLV-PALRGDTPVIKVLNKRDLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ E+ + + T N + + + ++ MT H + VM++
Sbjct: 66 AITEQWLSWLEKERGVRAITMTHNQRAEALD-----ILRLAGEMTPDHDRQKRALRVMIL 120
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH---ISDNMTRY 161
G+PNVGKS++IN + K P + Q + DN+ Y
Sbjct: 121 GIPNVGKSTLINTMAGRPAAKTGNEPAVTRAQQAIKLPDNVLLY 164
>gi|336395589|ref|ZP_08576988.1| putative GTP-binding protein [Lactobacillus farciminis KCTC 3681]
Length = 284
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 134/319 (42%), Gaps = 83/319 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ LK VDIV+E+ D+R+PF+ RN +L E
Sbjct: 10 MNKAKNQVQDRLKLVDIVLEIVDARLPFSSRNPVL------------------------E 45
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+I++K HI + ++ +P K+
Sbjct: 46 QIIDQK-----KHIIILNKSDLADPKITADWKL--------------------------- 73
Query: 121 GVPNVGKSSI-INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV--YNTTVMVVGVP 177
G +SI I+A + M K K++ +S+ + RY V Y M +G+P
Sbjct: 74 NFEQEGTNSIEIDAKHTKGMNKIKSM----IRSELSEKIQRYENNGVQNYRIKAMCIGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
NVGKS+I+N L GK V V G K GVT++ Q + I +LDTPGI P+I
Sbjct: 130 NVGKSTILNRLV------GKNVAVTGNKPGVTKN---QNWLKTNIGIDLLDTPGILWPKI 180
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFY--------LNRTGNYRYVDFFNLDEPSD 288
D+ + GM+LA ++D + ++A Y L + L + D FN P
Sbjct: 181 DDPKVGMKLALSGAIKDKIYAPDDVAIYALNFMETHYMDQLQESYGLTNADIFNHTTP-- 238
Query: 289 DIVMLLAKAAIKKKWFKRA 307
+++M L K K+ + RA
Sbjct: 239 ELLMNLTKKFGYKEDYDRA 257
>gi|336436401|ref|ZP_08616113.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007266|gb|EGN37291.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 282
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 149/346 (43%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN L + +N + +++LNK DL
Sbjct: 10 MTKAKRMMQENMKLIDLVIELVDARVPVSSRNPDLDELGKN-KARLILLNKSDLAE---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ++D Y + + Y+ +
Sbjct: 65 -------------------------------------ERMNDVWAAYFKEKGYSVVKL-- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
NA + +K + V + + + R + + N V MVVG+PN
Sbjct: 86 -----------NAKKGGGIKSIQGV----IQEACKEKIERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ G+RLA +++D ++ +A + +L + + + ++E +D L A
Sbjct: 182 DQTVGLRLAWIGSIKDEILNTEELAAELTGFLVNSYPDVLKEKYEIEESADGFENLRGIA 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R V N + DT + A++ ++ FR G G + L+
Sbjct: 242 E------SRHCLVKGNEL----DTEKAAKLLLDDFRNGRLGRITLE 277
>gi|302380886|ref|ZP_07269348.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
gi|302311264|gb|EFK93283.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
Length = 285
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 156/344 (45%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + I++++K VDIV+ + DSR+ + N +++ +++ +P +++LNK D+ + K
Sbjct: 13 MKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKD-KPQLILLNKMDMADPKIT 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
++ I +K + + + N K + KI PT + I +++ + +
Sbjct: 72 QNWINYFAKKNITALP------IDSKNGKNLDKIEPTTKKILEDVLSSRKDK-------- 117
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N+ KS II +M+VG+PNV
Sbjct: 118 ----NI-KSEIIR--------------------------------------MMIVGIPNV 134
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K P GVTR+ ++I K + +LDTPG+ P+ ++
Sbjct: 135 GKSTIINKLSNRQSAKTGNTP-----GVTRT-NQWIRIKGK--MELLDTPGVLWPKFEDN 186
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G+ LA ++D ++ E N+A ++ L + +++D + + + ++ AI
Sbjct: 187 EIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDSQILEKRYSVDTQNKETIEIMDDIAI 246
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + ++ D +V+ I I+ FRK G + L+
Sbjct: 247 RRGCLLKGKNI---------DYSKVSSIIIDEFRKTKLGRISLE 281
>gi|340758663|ref|ZP_08695248.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium varium
ATCC 27725]
gi|251833783|gb|EES62346.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium varium
ATCC 27725]
Length = 287
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 83/344 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I+++++ +DIV+EV D+R+P + +N + +N + V+VLNK DL+ K E L +K
Sbjct: 20 IKENMQLIDIVLEVVDARIPLSSKNPDITVFAKN-KKRVIVLNKSDLV-EKSEILYWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KE + EV+ + N + + I+ + + NT +MVVG+PNVG
Sbjct: 78 FKENNMADEVLEISAETGFNIRALYSIIDKVSAEKKEKMKAKGLRKVNTRLMVVGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGKSS
Sbjct: 138 KSRLINRI--------------------------------------------VGKSS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E + +LDTPGI P+ ++ E G LA
Sbjct: 151 ------------AGVGNKPGFTRG-KQWVRIKEG--LELLDTPGILWPKFESDEVGQNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN-----LDEPSDDIV-MLLAKAAIK 300
++D + + I D +++ Y D LDE +++ +L K A++
Sbjct: 196 ITGAIRDEI---LPIEDISCILISKMIKYGLWDILKERYKLLDEDKSEVIGEILEKIALR 252
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K F + ++ + + A + +R G LD+
Sbjct: 253 NKMFNKGENL---------NIQQAAYTVLRDYRNCRLGKFGLDK 287
>gi|229552203|ref|ZP_04440928.1| GTP-binding protein, partial [Lactobacillus rhamnosus LMS2-1]
gi|229314425|gb|EEN80398.1| GTP-binding protein [Lactobacillus rhamnosus LMS2-1]
Length = 270
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 69/264 (26%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+++ +K VD+++EV D+R P + RN +L + V + +P +++LNK+DL
Sbjct: 2 VQEKIKQVDLILEVVDARTPESSRNPMLDELVGD-KPRIIILNKQDL------------- 47
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
++ + TN RY++T+ G
Sbjct: 48 -------ADPVLTN---------------------EWVRYYQTQ--------------GF 65
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSII 185
++I A+ + H K+ + +P + +++ + R + N + M +G+PNVGKS+++
Sbjct: 66 AAI--AIDAQHAKRLQQIP-QAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVL 122
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N L ++K AV G K GVT++ +K S+ +LDTPGI P+ + GMRL
Sbjct: 123 NRL----VRKNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFASQTIGMRL 174
Query: 246 AACATLQDHLVGEINIADYILFYL 269
A + D + E + Y L Y
Sbjct: 175 AFTGAIADAVFQEDVVGLYGLTYF 198
>gi|195192482|ref|XP_002029606.1| GL20652 [Drosophila persimilis]
gi|194104051|gb|EDW26094.1| GL20652 [Drosophila persimilis]
Length = 65
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
M++GVPNVGKSSIIN LR+ H+KK A VG +AGVTR+V ++KI EKP +Y++D P
Sbjct: 1 MIIGVPNVGKSSIINVLRNVHLKKRSAARVGAEAGVTRAVGERIKIQEKPAVYMIDPP 58
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKA 144
M++GVPNVGKSSIIN LR+ H+KK A
Sbjct: 1 MIIGVPNVGKSSIINVLRNVHLKKRSA 27
>gi|348027363|ref|YP_004767168.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
gi|341823417|emb|CCC74341.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
Length = 287
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 159/356 (44%), Gaps = 92/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+++LK +D+VIE+ D+R+P + N +++ + + +P ++VLNK DL +
Sbjct: 10 MAKAKRLIQENLKIIDVVIELVDARIPMSSTNPMIKSLIGD-KPSIVVLNKADLADP--- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++++E V + +V+ N + KGV++++
Sbjct: 66 AVLDEWVAHYKQQGRKVLALNSKG--GKGVKQLI-------------------------- 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S++ +L + + + KA + R RT M++G+PNVG
Sbjct: 98 --------SLVRSLAAPKLARWKARGL----------KNRAVRT-------MILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + A K G T+ V I ++ + +LDTPG+ P+++N
Sbjct: 133 KSTLINKL-----SRRSAAKTADKPGETKG-KQWVHIGDQ--LDLLDTPGVLWPKLENQV 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD----FFNLD----EPSDDIVM 292
RLAA + D + + +L L + +Y D + LD +P D I
Sbjct: 185 SAYRLAATGAISDTVFD----METVLLQLVEQLSAQYPDELKGRYKLDSLCEKPLDTI-- 238
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR--DF 346
AI + KR VS V D + ++ ++ FR+G G++ LDR DF
Sbjct: 239 ----EAIGR---KRGCIVSGGVV----DLEKTYKLILKEFREGKIGAISLDRLGDF 283
>gi|430825090|ref|ZP_19443300.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
gi|430446482|gb|ELA56154.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
Length = 286
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P T + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPATKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|425736836|ref|ZP_18855112.1| GTPase YlqF [Staphylococcus massiliensis S46]
gi|425483308|gb|EKU50460.1| GTPase YlqF [Staphylococcus massiliensis S46]
Length = 288
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ +Q+ +P V++LNK D
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDDFIQH-KPRVVILNKMD------- 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
M+ E +NT
Sbjct: 62 -------------------------------------------MSNLKEMEKWNTFFEDK 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G V ++A +++K + I T + + + R M+VG+PNVG
Sbjct: 79 GAFPVA----VDAKHGKNLQKVEQAAIEATKEKFAREKEKGLRPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN + + K P GVT+ Q I + +LDTPGI P+ ++
Sbjct: 133 KSTLINKMAKRAIAKTGNTP-----GVTKQ---QQWIKVGNALQLLDTPGILWPKFEDQT 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V ++A Y L +L ++ FN++ D V+
Sbjct: 185 IGKKLSITGAIKDSIVHLDDVAIYGLNFLIEHDKETLLNHFNIEVDEDAGVL-------- 236
Query: 301 KKWF-----KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+WF +R + N V D V I R G G+ D
Sbjct: 237 -EWFDAIGRRRGMLQNGNEV----DYEAVIDAIIYDIRNGKVGNYCFD 279
>gi|261250990|ref|ZP_05943564.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417955274|ref|ZP_12598294.1| GTPase YlqF [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937863|gb|EEX93851.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342813330|gb|EGU48301.1| GTPase YlqF [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 311
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPERLKE 217
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ L+E P DI ++ ++ KR + + + + + I + R G+ G
Sbjct: 218 RYLLEELPESDIEIM------EEIGRKRGALSAGGRINLH----KTSEILLHELRNGTLG 267
Query: 339 SVMLD 343
V L+
Sbjct: 268 QVTLE 272
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 10 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KE + + + T + + V +I+ ++ ++ HR E+ N M+
Sbjct: 69 QLWIDHFEKEHN-VKAIAITTSQQ---QEVNRIMELVRKLAP-----HREEIGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 120 MGIPNVGKSTIINAL 134
>gi|402074898|gb|EJT70369.1| hypothetical protein GGTG_11397 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 462
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 145/368 (39%), Gaps = 91/368 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEK 66
+ + L N+ ++IE D R+P T N L+ ++ RP ++V KRDL
Sbjct: 109 MREKLVNIGLIIECRDMRVPLTSWNPTLETELEARSRPRIVVYTKRDLT----------- 157
Query: 67 VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
PT + + D + ++H + G +
Sbjct: 158 --------------------------AWPTDRAVVDRLKKFHEQDR--------GPAGLH 183
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
SS + L + P + + R + + MVVGVPN GKS+++N
Sbjct: 184 SSSDRDRLPACLFAGEDDGPATRAILAAVGSAAR-RQDSLLGMRAMVVGVPNAGKSTLLN 242
Query: 187 ----------------ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-------SEKPL- 222
ALR + G P GVTRS+ + V++ + P
Sbjct: 243 RLRSSGLGGGGRPGDAALRRKVARTGAE----PGPGVTRSLGTPVRVLAPGTGPDDVPGQ 298
Query: 223 -IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR----- 276
++++DTPG+ +P + + E ++LA ++D LV +ADY+LF+LN R
Sbjct: 299 GVFVMDTPGVFVPYVGDAEAMLKLALVGCVRDGLVPPAILADYLLFHLNLPARRRDEPRG 358
Query: 277 YVDFFNL-DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKG 335
+ + L EP++D+ + L A +R + V + + A ++ +R G
Sbjct: 359 HALYARLCPEPTNDVDVFLDHVA------RRTGKLGPGGVPLL---DQAADWVVQQWRGG 409
Query: 336 SFGSVMLD 343
G +LD
Sbjct: 410 HLGRFVLD 417
>gi|251782422|ref|YP_002996724.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391051|dbj|BAH81510.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 282
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 141/347 (40%), Gaps = 85/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADATRT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K E I + + K V + L ++D + R
Sbjct: 70 K--EWKAYYESQGIKTLAINSKEQSTVKKVTEAAKEL--MADKIKR-------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LR ++K E T M++G+PNVG
Sbjct: 112 -------------LRDRGIQK-----------------------ETLRT--MIIGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFEDEL 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKA 297
G++LA ++D L+ + + L Y R F L+E + +I+M L +
Sbjct: 186 VGLKLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLTRQ 245
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
FK +D R + +F++ R G G LD+
Sbjct: 246 L----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|363892710|ref|ZP_09319870.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
gi|361963144|gb|EHL16230.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
Length = 285
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 87/351 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I K++K V++V+E+ D+R P + +N + S+ N + ++VL K+DL +
Sbjct: 14 MKKTREEIIKNIKLVNLVVEIVDARAPISSKNPDID-SMINGKSKLVVLTKKDLAD---- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EE + K S+ E KG++ +V +
Sbjct: 69 ---EEDMGKFISYYKE-----------KGIK------------------------SVAIN 90
Query: 121 GVPNVGKSSIINAL---RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
G S +IN L + + +K KA I+ I M+VG+P
Sbjct: 91 STKKTGISPLINILEQIKEENYQKNKAKGIIKKPLRI-----------------MIVGIP 133
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS++IN + K+ G G+T+ SQ + K I +LDTPGI P+I+
Sbjct: 134 NVGKSTLINQIIGK-----KSAKTGNTPGITK---SQQWLKIKGDIELLDTPGILWPKIE 185
Query: 238 NLECGMRLAACATLQDHLVGEINI-ADYILFYL-NRTGNYRYVDF-FNLDEPS-DDIVML 293
+ +LA +++D ++ +I ++I F + N+ + +F N DE + I +
Sbjct: 186 DKITAQKLAFLGSIRDQVIEIEDIYYEFIKFLIENKKQKNLFEEFEINFDETDFEKISEI 245
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+AK KR + +N V F +A I + FR G +G + LD
Sbjct: 246 IAK--------KRGVLLKNNEVDYFI----LANIVLNEFRNGKYGKIQLDE 284
>gi|423197322|ref|ZP_17183905.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas hydrophila
SSU]
gi|404631010|gb|EKB27646.1| ribosome biogenesis GTP-binding protein YlqF [Aeromonas hydrophila
SSU]
Length = 316
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I AL +HM++ K + LP Q I +T H E+ M++G+PNVG
Sbjct: 67 ITALWVAHMEQEKGIKALPLTQQEPEKIKQLLTLCHEMLPERNLELRGVRAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 127 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
CG RLA A ++D + +IA + Y + R + ++ + + LL A +
Sbjct: 179 CGYRLAITAAIKDTVYDYADIAMFAADYFLKAYPERIQARYQIEALPETEIELLDLIA-R 237
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ F R +S D + + I + FR G G + L+
Sbjct: 238 QRGFMRKGGLS--------DLHKASEILVNEFRSGLLGRISLE 272
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL + +
Sbjct: 10 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPEIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L + +E+ I + T K L TL H M E+ M++
Sbjct: 69 ALWVAHMEQEKG-IKALPLTQQEPEKIKQ----LLTLCH---EMLPERNLELRGVRAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|424041936|ref|ZP_17779765.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-02]
gi|408890168|gb|EKM28364.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-02]
Length = 302
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ Q ++ +P+V VLNKRDL + +
Sbjct: 1 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISQ-IRGDKPVVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + + KEQ+ + I T+ V KI+ + ++ HR E+ N M+
Sbjct: 60 QVWIDHLEKEQNVKAMAITTS----ETSEVHKIMELCRKLAP-----HREEIGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 98 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 148
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 149 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 208
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 209 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 259
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 260 ITLELPEMITQELIEVEIE 278
>gi|259148670|emb|CAY81915.1| Mtg1p [Saccharomyces cerevisiae EC1118]
gi|349580378|dbj|GAA25538.1| K7_Mtg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 367
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>gi|190408326|gb|EDV11591.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
Length = 367
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>gi|418028946|ref|ZP_12667495.1| hypothetical protein LDBUL1632_00289 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354691283|gb|EHE91221.1| hypothetical protein LDBUL1632_00289 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 285
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 84/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E+ L +D+VIEV D+R+P RN ++ + V + +P +++LNK DL +
Sbjct: 11 MNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGD-KPHLIILNKTDLADPVMT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L ++K++ ++ + M H T + T ++
Sbjct: 70 KLWQKKLQGPRTLVMA---------------------------MDAQHNTNMQALTTLI- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S + L ++G + PI+ V +VGVPN G
Sbjct: 102 ---KKAASEKVKKLE----ERGASNPII---------------------RVCLVGVPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L ++ G + GVT+ Q + I ILDTPGI P+ ++ E
Sbjct: 134 KSTIINRLVGRNVTM-----TGDRPGVTKG---QAWLKTPYGIQILDTPGILWPKFEDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD----EPSDDIVMLLAK 296
G +LAA ++D + ++A +++ L + F N E D +LLA
Sbjct: 186 VGYKLAAFGAIKDTIFHADDVALFVIRQLRQYYPAYLAKFANCTKDKLENIGDTDLLLAM 245
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+N +R D + ++ RKG G + LD
Sbjct: 246 -------------TQNNGMR--EDYDRFSLFMLQRLRKGKLGRISLD 277
>gi|151946253|gb|EDN64484.1| GTPase [Saccharomyces cerevisiae YJM789]
Length = 367
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>gi|424030215|ref|ZP_17769704.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-01]
gi|408882312|gb|EKM21147.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio cholerae
HENC-01]
Length = 314
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ Q ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISQ-IRGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + + KEQ+ + I T+ V KI+ + ++ HR E+ N M+
Sbjct: 72 QVWIDHLEKEQNVKAMAITTS----ETSEVHKIMELCRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIEELPESDIEIMEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 272 ITLELPEMITQELIEVEIE 290
>gi|365540627|ref|ZP_09365802.1| GTPase YlqF [Vibrio ordalii ATCC 33509]
Length = 314
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 30/190 (15%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+ NVGKS+IIN L G+AV G + VTR Q +I+
Sbjct: 110 HREEVGKNIRTMIMGITNVGKSTIINTL------AGRAVAQTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + ++A Y + YL + R +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYEDVAFYTVEYLAQAYPERLQE 220
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP----DTGEVARIFIEHFRK 334
+ +DE P D+ +W + ++ + P D + + I + R+
Sbjct: 221 RYQIDELPQSDV-----------EWME---EIGRKRGALRPGGRIDLHKASEILLHELRQ 266
Query: 335 GSFGSVMLDR 344
G G + L+R
Sbjct: 267 GILGQITLER 276
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ N +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPLISHLRGN-KPCVKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KEQ + + T+ N + V KI+ + ++ HR EV N M+
Sbjct: 72 QLWIDHFEKEQGVKAMAVTTS----NPQEVHKIMELCRKLAP-----HREEVGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+ NVGKS+IIN L
Sbjct: 123 MGITNVGKSTIINTL 137
>gi|334128047|ref|ZP_08501948.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
gi|333388369|gb|EGK59548.1| ribosome biogenesis GTP-binding protein YlqF [Centipeda periodontii
DSM 2778]
Length = 296
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 146/343 (42%), Gaps = 83/343 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++++LK VD+VIE+ D+R+P + N +L++ V +P V+VLNK DL +
Sbjct: 27 VKENLKLVDVVIELLDARIPMSSANPVLREIVGG-KPRVIVLNKADLAD----------- 74
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
E + + V NC Q I T V V V G
Sbjct: 75 --EAATRAWV--------NCFATQGI---------------------TAVPVDAVKGRGV 103
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
++ A+ +K +D + + H + M++G+PNVGKSS+IN
Sbjct: 104 KELVQAIAKCAKQK-------------TDKLVQ-HGAKARAARCMILGIPNVGKSSLINR 149
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L G V + GVTR+ ++I + + +LD PGI P+ ++ + + LA
Sbjct: 150 LSG-----GSKTKVENRPGVTRA-KQWIRIGAQ--LELLDMPGILWPKFEDRQAALHLAF 201
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRY----VDFFNLDEPSDDIVMLLAKAAIKKKW 303
+ D++ ++A +L L+ T RY ++ + L++ + LL + K+
Sbjct: 202 TGAINDNVY---DVASVVLLLLD-TLRMRYPSDLMERYRLEKELPSGMELLEEIGRKRGC 257
Query: 304 FKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDF 346
+ V D + +I + FR G G V LD DF
Sbjct: 258 LRAGGKV---------DYEKAEQIVLTDFRSGRLGRVTLD-DF 290
>gi|167623693|ref|YP_001673987.1| ribosomal biogenesis GTPase [Shewanella halifaxensis HAW-EB4]
gi|167353715|gb|ABZ76328.1| GTP-binding protein HSR1-related [Shewanella halifaxensis HAW-EB4]
Length = 312
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 90/348 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD+VIEV D+R+P++ N ++Q +++ +P + +LNK DL + +
Sbjct: 10 MHKARKEIEEVMPQVDLVIEVLDARIPYSSENPMVQ-TLRGDKPCIKLLNKSDLADPE-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
T Q + + R
Sbjct: 67 -----------------------------------TTQQWIEYLEREQ------------ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV K+ I L++S +KK +P L + N + + + M++G+PNVG
Sbjct: 80 GV----KAMAITTLQASQVKK---IPDL--CRKFVPNRDKIEK----DIRTMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT+ +Q +I+ + I + DTPGI P++DN +
Sbjct: 127 KSTIINTLAGRMIAK-----TGNEPAVTK---TQQRINLRNGIVLSDTPGILWPKVDNEK 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAI 299
RLA ++D + ++A + Y + + + + + P DI +L A
Sbjct: 179 SSYRLAVTGAIKDTAMEYEDVAMFAAEYFLQAYPEAIAERYKIKQMPDTDIELLEA---- 234
Query: 300 KKKWFKRAFDVSSNSVRMFP----DTGEVARIFIEHFRKGSFGSVMLD 343
+ N + P D + + + + FR G G + L+
Sbjct: 235 ----------IGRNRGALRPGGRIDLHKASEVLLHDFRAGRIGQLSLE 272
>gi|392940892|ref|ZP_10306536.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
gi|392292642|gb|EIW01086.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
Length = 277
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 18/173 (10%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
M+VGVPNVGKS+ IN L S K G K GVTR+ + +K P +LDTPGI
Sbjct: 122 MIVGVPNVGKSTFINKLIGS-----KRAKTGDKPGVTRA-LHWIKT---PYFDLLDTPGI 172
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
P+ D+ + G+ LA ++D ++ IA ++ L + + + +D+ D+
Sbjct: 173 LWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVDEDF 232
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
LL + KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 233 ELLKEIG-----RKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGKISLER 276
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + V+ I+ +++LNK DL +
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVK-IKKRIILLNKADLADDVIT 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM--TRYHRTEVYNTTVM 118
L E +++ +V + G+++I Q + ++ + + + M
Sbjct: 68 DLWIEYFKEKGIEAVKV-----NSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRGM 122
Query: 119 VVGVPNVGKSSIINALRSSHMKK 141
+VGVPNVGKS+ IN L S K
Sbjct: 123 IVGVPNVGKSTFINKLIGSKRAK 145
>gi|343497878|ref|ZP_08735930.1| GTPase YlqF [Vibrio nigripulchritudo ATCC 27043]
gi|342815972|gb|EGU50878.1| GTPase YlqF [Vibrio nigripulchritudo ATCC 27043]
Length = 311
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 20/185 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR ++ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREQMGKNIRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL +
Sbjct: 158 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAEQYPNLLRE 217
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ LDE + V L+ + K+ + V D + + I + R G+ G
Sbjct: 218 RYQLDELPESDVELMEEIGRKRGALRSGGRV---------DLHKASEILLHELRSGTIGK 268
Query: 340 VMLDR 344
+ L+R
Sbjct: 269 ITLER 273
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ +++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SALRKDKPCVKVLNKRDLSDPEMT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
E +E+ + I T N + V KI+ + ++ HR ++ N M+
Sbjct: 69 EKWIEHFEQEKGVKAMAITTT----NPQEVHKIMELCRKLAP-----HREQMGKNIRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 120 MGIPNVGKSTIINTL 134
>gi|428769845|ref|YP_007161635.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
gi|428684124|gb|AFZ53591.1| Ras superfamily GTP-binding protein YlqF [Cyanobacterium aponinum
PCC 10605]
Length = 280
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 93/345 (26%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ +++ LK VD+V+EV D+R+P + L+Q + + +P +LVLN+ D+I+ +
Sbjct: 16 RQLKEQLKRVDVVLEVRDARIPLASHHPQLKQWIGD-KPRLLVLNREDMIS--------D 66
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
+RKE G Q +P + D GV V
Sbjct: 67 SLRKEWQE-------------WFGAQGEIPFFTNAKDGK----------------GVKAV 97
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K+S ++ ++ ++ +LP +V+G PNVGKS++I
Sbjct: 98 KKAS--QSMEKQVNERRRSRGMLPR-----------------PVRAVVIGFPNVGKSALI 138
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N L K V KAGVT+ + V+IS++ + +LD PG+ +++N E ++L
Sbjct: 139 NRLLQR-----KIVASARKAGVTKQ-LQWVRISDQ--LELLDAPGVIPWKLENQEDALKL 190
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
A C +GE + ++ DF +L +V L + +K ++
Sbjct: 191 AICED-----IGEAAYDNQLV----------AADFVDL------LVKLGSDEVLKSRYGL 229
Query: 306 RAFDVSSN------SVRMFPDTGE-VARIFIEHFRKGSFGSVMLD 343
+++ + R + + E VAR ++ FRKG GSV L+
Sbjct: 230 DPLEMTGEEFIYELAARKYKNDKERVARQLLQDFRKGYLGSVSLE 274
>gi|55820933|ref|YP_139375.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMG 18311]
gi|55822855|ref|YP_141296.1| ribosomal biogenesis GTPase [Streptococcus thermophilus CNRZ1066]
gi|386344588|ref|YP_006040752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|445376173|ref|ZP_21426604.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
gi|445390980|ref|ZP_21428327.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|55736918|gb|AAV60560.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
gi|55738840|gb|AAV62481.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
gi|339278049|emb|CCC19797.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|444750019|gb|ELW74873.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|444750129|gb|ELW74968.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
Length = 284
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 147/349 (42%), Gaps = 91/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKILILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
DN T+ RT + + +
Sbjct: 66 -----------------------------------------DNRTKEWRTYFESQGIKTL 84
Query: 121 GVPNVGKSSI---INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+ + +S++ +A +S +K +Q + + R + E T M++G+P
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTEK---------IQRLRE---RGIQKETLRT--MIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D L+ + + L Y R + F +L+E + +I+M +
Sbjct: 183 DELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D N +F++ R G G LD
Sbjct: 243 T----RKLGFREDYDRFYN-------------LFVKDVRDGKLGRYTLD 274
>gi|406983198|gb|EKE04440.1| Ribosome biogenesis GTP-binding protein YlqF [uncultured bacterium]
Length = 283
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 91/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDL----IN 56
+ + + +++ VD+++E+ D+R+P + +++ +N +P +LV+NK DL +N
Sbjct: 11 IAKAERKLQEQTALVDVILEIIDARIPLSSSYFGIEKLTRN-KPRLLVMNKADLADPELN 69
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
SK + +K +V+ TN + K + ++ T
Sbjct: 70 SKWRDYMADKTG------LKVVLTNSNS--SKDISTLI--------------------KT 101
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ +G P + K + KG+ M R R M +G+
Sbjct: 102 AIELGRPEIEK----------LVAKGR--------------MPRPVRA-------MAIGM 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKSSIIN L +K KA VGPKAGVTR+ ++I+ P + +DTPGI ++
Sbjct: 131 PNVGKSSIINKL----VKTAKA-KVGPKAGVTRAA-QWIRIN--PKLEFMDTPGIIPMKL 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FNLDEPSDDIVM 292
DN E ++LA ++ ++ + IA ++ L RY D + L+E ++ +
Sbjct: 183 DNQERAVKLAVVNSISENAYDLVEIAQELVNILYE----RYPDLLKKHYKLEEMNETPSL 238
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ A +KW ++ D A I + FR G G + L+
Sbjct: 239 I--DIARSRKWLLPGEEL---------DINRCASIVLSDFRNGRIGRITLE 278
>gi|116627721|ref|YP_820340.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMD-9]
gi|116100998|gb|ABJ66144.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 284
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 147/349 (42%), Gaps = 91/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKILILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
DN T+ RT + + +
Sbjct: 66 -----------------------------------------DNRTKEWRTYFESQGIKTL 84
Query: 121 GVPNVGKSSI---INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+ + +S++ +A +S +K +Q + + R + E T M++G+P
Sbjct: 85 AINSKEQSTVKLVTDAAKSLMTEK---------IQRLRE---RGIQKETLRT--MIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D L+ + + L Y R + F +L+E + +I+M +
Sbjct: 183 DELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D N +F++ R G G LD
Sbjct: 243 T----RKLGFREDYDRFYN-------------LFVKDVRDGKLGRYTLD 274
>gi|323332062|gb|EGA73473.1| Mtg1p [Saccharomyces cerevisiae AWRI796]
gi|323336294|gb|EGA77565.1| Mtg1p [Saccharomyces cerevisiae Vin13]
gi|365763819|gb|EHN05345.1| Mtg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 339
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 12 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 71
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 72 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 127
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 128 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 154
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 155 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 200
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 201 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 260
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 261 YDVLRRLQVNK 271
>gi|224532340|ref|ZP_03672972.1| GTP-binding protein [Borrelia valaisiana VS116]
gi|224511805|gb|EEF82211.1| GTP-binding protein [Borrelia valaisiana VS116]
Length = 279
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 43/264 (16%)
Query: 95 PTLQHISDNMTR---YHRTEVYNTTVMVVG---VPNVGKSSIINALRSSHMKKGKAVPIL 148
P + I N T+ H++++ TT ++ N+G + II+ + M+K
Sbjct: 44 PLTEKIIKNQTKIILLHKSDIAQTTEIIKWKKYFENLGNTVIISNIYKKGMRK------- 96
Query: 149 PTLQHISDNMTR---YHRTEVYN--TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP 203
I DN+ + R + Y V+++GVPNVGKSSIIN L K+ V
Sbjct: 97 ----QIIDNIKKIVIVKRIKNYKEKIKVLIIGVPNVGKSSIINLLSGR-----KSAKVAN 147
Query: 204 KAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIAD 263
K G T+++ VKI+E+ I + D PGI + + +LA +++ ++ I++A
Sbjct: 148 KPGYTKNIQI-VKINEE--INLFDMPGILWHNLADQSIAKKLAILDMIKNEILDNIDLAL 204
Query: 264 YILFYLNRTGNYRYVDFFNL-DEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTG 322
Y+L +++ + + + + S DI+ AKA R N + +
Sbjct: 205 YLLEIMDQNNKNILLKKYEICHKNSLDILQNFAKA--------RKLIDKKNELNL----E 252
Query: 323 EVARIFIEHFRKGSFGSVMLDRDF 346
+ ++I I+ FR+G FG ++LD+++
Sbjct: 253 KASKILIKEFREGKFGKIILDKNY 276
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 18/139 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M R L I+ +L+ +IV+E+ D+R PF+ +N L ++ ++N + +++L+K D+ ++
Sbjct: 12 MKRALDLIKNNLQKTNIVLEILDARAPFSSKNPLTEKIIKN-QTKIILLHKSDI--AQTT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTR---YHRTEVY--NT 115
+I+ K E + VI +N KG++K I DN+ + R + Y
Sbjct: 69 EIIKWKKYFENLG-NTVIISNIYK---KGMRK------QIIDNIKKIVIVKRIKNYKEKI 118
Query: 116 TVMVVGVPNVGKSSIINAL 134
V+++GVPNVGKSSIIN L
Sbjct: 119 KVLIIGVPNVGKSSIINLL 137
>gi|384135042|ref|YP_005517756.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289127|gb|AEJ43237.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 298
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 90/356 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + L+ +D+V+E+ D+R+P + R+ +L + ++ +P ++VL + DL +
Sbjct: 16 MAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARH-KPRLVVLTRIDLAD---- 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P C + R+HR V+
Sbjct: 71 ------------------------PRC------------TDRWVERFHRE-------GVI 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNM--TRYHRTEVYNTTVMVVGVPN 178
+P +NA +++ + + + D M R E T M+ G+PN
Sbjct: 88 AIP-------VNARSGQGLREFRRA----LDEVVEDKMDRARARGIERAVTRGMICGIPN 136
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ +N L + K G + GVTR+ + +++ L LDTPG+ P++ N
Sbjct: 137 VGKSTFVNQLAGRAVAK-----TGDRPGVTRA-LQWIRVGHTEL---LDTPGVLAPKLAN 187
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY------RYVDFFNLDEPSDDIVM 292
E G++LAA +++ + + Y+L YL +G Y RY ++ P + +
Sbjct: 188 DEQGLKLAASGAIKEEIFEAYEVCAYVLAYL--SGRYPQALAQRY--GLRVEAPIEWTNI 243
Query: 293 LLAKAAIKKKWFK-----RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A+ + WF+ R V V D VA++ I ++G G V L+
Sbjct: 244 QDVWPAV-QPWFEHIGRTRGALVPGGGV----DEERVAKMVIHDLQEGRLGPVSLE 294
>gi|300854481|ref|YP_003779465.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434596|gb|ADK14363.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 284
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
VMVVG+PNVGKSS IN M K G K GVTRS + I K I ++DTPG
Sbjct: 123 VMVVGIPNVGKSSFIN-----KMAKNSIAKTGDKPGVTRS---KQWIKTKLGIELMDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P++++ E + LA ++D ++ +A +L L R +D + L E S+D
Sbjct: 175 ILWPKLESQETQLHLAFTGAIKDEIMDIEELALSLLKDLCERYPKRLMDRYKLSELSEDP 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + A KR VS + D V+ I ++ FR G G + L+
Sbjct: 235 LVNMDNIA-----RKRGAIVSGGKI----DYNRVSVIILDEFRGGKLGPISLE 278
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 9/149 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++++++LK VD VIE+ D+R+ + +N + + +P +++LNK DL +
Sbjct: 10 MAKTKREMKQNLKLVDAVIEIRDARIIRSSKNPEVDD-ICGSKPRIILLNKNDL---SED 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTT--V 117
S+ ++ ++ + + + N +G++ I P L + + R + + T V
Sbjct: 66 SVTKKWIKYLSNKNIKALAVNSNT--GQGIKSIKPLLDELLKEKHDRMNNKGILGITDRV 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVP 146
MVVG+PNVGKSS IN + + + K P
Sbjct: 124 MVVGIPNVGKSSFINKMAKNSIAKTGDKP 152
>gi|69246756|ref|ZP_00604104.1| GTP-binding protein [Enterococcus faecium DO]
gi|425057006|ref|ZP_18460442.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
gi|68195110|gb|EAN09570.1| GTP-binding protein [Enterococcus faecium DO]
gi|403041302|gb|EJY52327.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
Length = 293
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 17 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 75
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 76 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 130
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 131 MVLGIPNVGKSTLMNRL 147
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 130 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 181
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 182 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 241
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 242 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 283
>gi|262164225|ref|ZP_06031963.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio mimicus VM223]
gi|262026605|gb|EEY45272.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio mimicus VM223]
Length = 302
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
N M++G+PNVGKS+IIN L + + G + VTR Q +I+ + I + D
Sbjct: 105 NIRTMIMGIPNVGKSTIINTLAGRTIAQ-----TGNQPAVTRR---QQRINLQNGIVLSD 156
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
TPGI P+++N G RLAA ++D + +A Y + YL + + + + +DE
Sbjct: 157 TPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPEKLKERYQIDELP 216
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ V L+ + K+ + V D + + I + R+G G + L+R
Sbjct: 217 ETDVELMEEIGRKRGALRAGARV---------DLHKASEILLHELRQGVLGQITLER 264
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N L+ ++ +P V VLNKRDL + +
Sbjct: 1 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISH-IRGEKPCVKVLNKRDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +E+ + I T+ N + V KIL + ++ R E+ N M+
Sbjct: 60 ELWIAHLEQEKGVKAMAITTS----NPQEVHKILELCRKLAP-----QREEIGKNIRTMI 110
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 111 MGIPNVGKSTIINTL 125
>gi|253733519|ref|ZP_04867684.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|417898523|ref|ZP_12542443.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
gi|253728573|gb|EES97302.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|341848556|gb|EGS89719.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
Length = 294
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 142/348 (40%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LN
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILN---------- 58
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+K+ S+++E M+++ + + V
Sbjct: 59 -------KKDMSNLNE---------------------------MSKWEQFFIDKGYYPVS 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++A ++KK +A I T + + + M+VG+PNVG
Sbjct: 85 ----------VDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + +D P + +LA
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQHDIERLKAHYKIDVP--EYAEILA----- 237
Query: 301 KKWF-----KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
WF KR N + D V + I R G+ D
Sbjct: 238 --WFDAIGKKRGLIRRGNEI----DYEAVIELIIYDIRNAKIGNYCFD 279
>gi|227551190|ref|ZP_03981239.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|293377188|ref|ZP_06623396.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|293570273|ref|ZP_06681342.1| GTP-binding protein [Enterococcus faecium E980]
gi|424765200|ref|ZP_18192603.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|425054012|ref|ZP_18457527.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430840980|ref|ZP_19458901.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|431034777|ref|ZP_19491654.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|431102201|ref|ZP_19496812.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|431738013|ref|ZP_19526963.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|431740438|ref|ZP_19529353.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|431751528|ref|ZP_19540216.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|431756373|ref|ZP_19545005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|431761625|ref|ZP_19550187.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
gi|227179658|gb|EEI60630.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|291609680|gb|EFF38941.1| GTP-binding protein [Enterococcus faecium E980]
gi|292644208|gb|EFF62310.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|402417222|gb|EJV49526.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|403036936|gb|EJY48269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430494711|gb|ELA70946.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|430563492|gb|ELB02701.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|430570429|gb|ELB09390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|430598049|gb|ELB35809.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|430603302|gb|ELB40832.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|430615309|gb|ELB52267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|430620227|gb|ELB57029.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|430624317|gb|ELB60967.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
Length = 293
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 17 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 75
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 76 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 130
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 131 MVLGIPNVGKSTLMNRL 147
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 130 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 181
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 182 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLPIEQEEK 241
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 242 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 283
>gi|406579906|ref|ZP_11055131.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|406582129|ref|ZP_11057260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|406584370|ref|ZP_11059402.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|406589226|ref|ZP_11063668.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410935906|ref|ZP_11367780.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
gi|404454845|gb|EKA01745.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|404458533|gb|EKA04954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|404464179|gb|EKA09736.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|404471195|gb|EKA15747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410735705|gb|EKQ77612.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
Length = 307
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 31 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 90 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 144
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 145 MVLGIPNVGKSTLMNRL 161
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 144 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 195
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + + + R D + L E +
Sbjct: 196 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFAQYYSGRISDRYGLSIEQEEK 255
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 256 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 297
>gi|430821967|ref|ZP_19440548.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430864451|ref|ZP_19480373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|431743482|ref|ZP_19532361.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
gi|430443799|gb|ELA53761.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430553998|gb|ELA93672.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|430606914|gb|ELB44251.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
Length = 286
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAVYGLDFFARYYSGRISDRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|299144233|ref|ZP_07037313.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518718|gb|EFI42457.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 279
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 144/344 (41%), Gaps = 75/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++DIE K VD IE+ DSR+P + RN LL + + N + +LVLNK DL
Sbjct: 10 MKKTIEDIEAKTKLVDFYIEIIDSRIPISSRNPLLNKVLSN-KKGLLVLNKSDLSEESQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EK+ + + I + PN V KI I+++M
Sbjct: 69 RKWAEKLSTDNK---KAILYSAAKPN---VNKI------INESMN--------------- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L ++ ++K K I NM M+VG+PN G
Sbjct: 102 -------------LMAAEIEKSKEKGI---------NMGPLR--------AMIVGIPNSG 131
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + K K+ G + GVT++ +K++ P I++LDTPG+ P+ ++
Sbjct: 132 KSTFINGI-----SKRKSAKTGNRPGVTKT-NQWIKLN--PKIHLLDTPGVLWPKFEDQN 183
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+ LA ++D ++ + ++ L + D + + V ++ +
Sbjct: 184 IALNLAFTGAIKDEIMDTETLCLKLIERLLGLDSSILEDRYKVTTAEKTPVEIMEAIGM- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
R + N + D +V+ + ++ FRKG G + L+R
Sbjct: 243 ----IRGAKLRGNEI----DYTKVSNLILDEFRKGVLGRITLER 278
>gi|257898824|ref|ZP_05678477.1| GTP-binding protein [Enterococcus faecium Com15]
gi|257836736|gb|EEV61810.1| GTP-binding protein [Enterococcus faecium Com15]
Length = 286
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLPIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|257887693|ref|ZP_05667346.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257896187|ref|ZP_05675840.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430852787|ref|ZP_19470518.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|431070188|ref|ZP_19494196.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|431582091|ref|ZP_19520040.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
gi|257823747|gb|EEV50679.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257832752|gb|EEV59173.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430541621|gb|ELA81766.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|430567698|gb|ELB06773.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|430593981|gb|ELB31951.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
Length = 286
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLPIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|293568166|ref|ZP_06679502.1| GTP-binding protein [Enterococcus faecium E1071]
gi|314938031|ref|ZP_07845341.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|314941983|ref|ZP_07848844.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|314948764|ref|ZP_07852136.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|314951782|ref|ZP_07854821.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|314991811|ref|ZP_07857269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|314995852|ref|ZP_07860939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|389868316|ref|YP_006375739.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|424779675|ref|ZP_18206586.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|424794597|ref|ZP_18220544.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|424825722|ref|ZP_18250685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|424855823|ref|ZP_18280121.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|424866148|ref|ZP_18289997.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|424938571|ref|ZP_18354355.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|424952498|ref|ZP_18367515.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|424956838|ref|ZP_18371598.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|424959384|ref|ZP_18373973.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|424963125|ref|ZP_18377390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|424967388|ref|ZP_18381091.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|424969857|ref|ZP_18383405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|424973476|ref|ZP_18386753.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|424976285|ref|ZP_18389388.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|424980599|ref|ZP_18393381.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|424983189|ref|ZP_18395789.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|424986601|ref|ZP_18399010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|424989599|ref|ZP_18401859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|424995261|ref|ZP_18407157.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|424997214|ref|ZP_18408979.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|425001557|ref|ZP_18413061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|425003209|ref|ZP_18414588.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|425009197|ref|ZP_18420229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|425010142|ref|ZP_18421112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|425013313|ref|ZP_18424049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|425017282|ref|ZP_18427795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|425019858|ref|ZP_18430195.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|425022883|ref|ZP_18433036.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|425031327|ref|ZP_18436464.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|425036885|ref|ZP_18441600.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|425039240|ref|ZP_18443797.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|425043851|ref|ZP_18448053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|425044394|ref|ZP_18448556.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|425049526|ref|ZP_18453373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|425051442|ref|ZP_18455108.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|425060028|ref|ZP_18463338.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|447912908|ref|YP_007394320.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
gi|291589156|gb|EFF20968.1| GTP-binding protein [Enterococcus faecium E1071]
gi|313589956|gb|EFR68801.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|313593622|gb|EFR72467.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|313596061|gb|EFR74906.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|313599235|gb|EFR78080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|313642606|gb|EFS07186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|313644830|gb|EFS09410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|388533565|gb|AFK58757.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|402925013|gb|EJX45189.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|402925238|gb|EJX45399.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|402926391|gb|EJX46431.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|402931138|gb|EJX50733.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|402936784|gb|EJX55935.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|402939052|gb|EJX58010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|402941118|gb|EJX59871.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|402944938|gb|EJX63318.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|402950239|gb|EJX68248.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|402950675|gb|EJX68658.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|402954529|gb|EJX72140.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|402958434|gb|EJX75747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|402963190|gb|EJX80076.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|402966045|gb|EJX82716.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|402970088|gb|EJX86454.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|402972187|gb|EJX88405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|402976063|gb|EJX91984.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|402977896|gb|EJX93669.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|402981481|gb|EJX97007.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|402986120|gb|EJY01267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|402986623|gb|EJY01738.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|402990422|gb|EJY05295.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|402992483|gb|EJY07184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|403000950|gb|EJY15033.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|403001315|gb|EJY15376.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|403004617|gb|EJY18406.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|403010679|gb|EJY24037.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|403011633|gb|EJY24927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|403013185|gb|EJY26312.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|403015972|gb|EJY28820.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|403016878|gb|EJY29667.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|403017894|gb|EJY30617.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|403027386|gb|EJY39279.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|403029919|gb|EJY41641.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|403037710|gb|EJY48974.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|403043020|gb|EJY53949.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|445188617|gb|AGE30259.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
Length = 307
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 31 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 89
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 90 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 144
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 145 MVLGIPNVGKSTLMNRL 161
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 144 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 195
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 196 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 255
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 256 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 297
>gi|299822634|ref|ZP_07054520.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
gi|299816163|gb|EFI83401.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
Length = 289
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKS++IN L ++ + G K GVT++ Q I + + +LDTPG
Sbjct: 123 AMILGIPNVGKSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVEKSLELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G +LA ++D L+ +IA + + + R + + D +
Sbjct: 175 ILWPKFEDQSVGFKLALTGAIKDDLLQMEDIASFAAEFFRKNYPERLLHYLENDTIPETS 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ L A KK+ F R D PD A FI R G + LD
Sbjct: 235 LEFLGMIAEKKRLFDRYQD---------PDYDRAAETFIRDIRTQKLGRITLD 278
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINS-KH 59
M + + + + LK VD++ E+ D+R+P + N +L + + + V++LNK DL + +
Sbjct: 10 MAKARRQVTEKLKLVDVIFELVDARLPLSSANPMLAEIIHQ-KKRVIILNKADLADEVRT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN---TT 116
I+ EQ ++ + KG+ KI + + +T+
Sbjct: 69 AEWID--YFAEQGLLAVAVDAQA----GKGMHKISRAAELLMKEKFDNWKTKGMKPRAIR 122
Query: 117 VMVVGVPNVGKSSIINALRSSHMKK 141
M++G+PNVGKS++IN L ++ +
Sbjct: 123 AMILGIPNVGKSTLINRLAKKNIAR 147
>gi|330719082|ref|ZP_08313682.1| GTP-binding protein YlqF [Leuconostoc fallax KCTC 3537]
Length = 283
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 150/352 (42%), Gaps = 95/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VDIV E+ D+R+P + RN + + + +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLKLVDIVFELVDARIPESSRNPEVDKLIGK-KPRLLIMTKADLADP--- 67
Query: 61 SLIEEKVRKEQSHIS----EVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ R + H V+ + R+P P L +T+ R
Sbjct: 68 ----EQTRLWKKHFEMQGYTVLVLDTRDPKT-------PQL------VTKAAR------- 103
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
+ A +++ ++KG I D R ++ G+
Sbjct: 104 ------------EALKAKKTAQLEKG-----------IVDQPIR----------ALIAGI 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+++N H+ K P + GVT+ + + +K S K + +LD+PG+ P+
Sbjct: 131 PNVGKSTLLN-----HLIKKNVAPTADRPGVTKKI-AWLKTSTK--LELLDSPGVLWPKF 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL-----DEPSDDIV 291
++ G+RL+ ++ + + + A ++L + R + ++L D+ D++
Sbjct: 183 EDQAIGLRLSLTGAVKSTIFAKDDAALFLLKFYRDYYPERIIARYHLPDNAFDQSDVDVL 242
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+L+ +K FK +D +S + + RKG G+ LD
Sbjct: 243 LLIT----QKLGFKDDYDRASERI-------------LNDLRKGKLGTFTLD 277
>gi|126665185|ref|ZP_01736168.1| GTP-binding protein [Marinobacter sp. ELB17]
gi|126630555|gb|EBA01170.1| GTP-binding protein [Marinobacter sp. ELB17]
Length = 315
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 31/212 (14%)
Query: 137 SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKG 196
+H ++ +A+ IL ++++ +T H + VM++G+PNVGKS++IN L K
Sbjct: 87 THNQRSEALDIL----NLAEQLTPNHDRQKSALRVMILGIPNVGKSTLINTLAGRPAAK- 141
Query: 197 KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLV 256
G + VTR+ + +K+ L+Y DTPG P++ CG RLA ++ ++
Sbjct: 142 ----TGNEPAVTRAQQA-IKLPNNILLY--DTPGFLWPKLSPAACGYRLAVTGAIRSAVL 194
Query: 257 GEINIADYILFYLNRTGNYRYVDF----FNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVS 311
++A + YL Y +F + LD P D + + A AA ++++F R
Sbjct: 195 DFEDVALFAAEYL----LAHYPEFLTSRYGLDPLPVDGLAAMDAIAA-RRRFFGRG---- 245
Query: 312 SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD +V+ + + FR G+ G + L+
Sbjct: 246 -----GIPDLHKVSEVLLNEFRAGTLGRISLE 272
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I++ + +D++IEV D+R+PF+ N L+ +++ P++ VLNKRDL +
Sbjct: 10 MHKARKEIKEVMPQMDLIIEVVDARIPFSSENPLVP-ALRGDTPLIKVLNKRDLADPDVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +E+ + + N R+ + ++++ +T H + VM++
Sbjct: 69 GQWQSWLERERGVKTITLTHNQRSEALD--------ILNLAEQLTPNHDRQKSALRVMIL 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|257878019|ref|ZP_05657672.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257881195|ref|ZP_05660848.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257889782|ref|ZP_05669435.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257892281|ref|ZP_05671934.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260559069|ref|ZP_05831255.1| GTP-binding protein [Enterococcus faecium C68]
gi|261207603|ref|ZP_05922288.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289565115|ref|ZP_06445568.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|293556763|ref|ZP_06675326.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|293563421|ref|ZP_06677870.1| GTP-binding protein [Enterococcus faecium E1162]
gi|294614823|ref|ZP_06694718.1| GTP-binding protein [Enterococcus faecium E1636]
gi|294617502|ref|ZP_06697133.1| GTP-binding protein [Enterococcus faecium E1679]
gi|294622302|ref|ZP_06701345.1| GTP-binding protein [Enterococcus faecium U0317]
gi|383328502|ref|YP_005354386.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|415896304|ref|ZP_11550792.1| GTP-binding protein [Enterococcus faecium E4453]
gi|427395155|ref|ZP_18888077.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430820383|ref|ZP_19439016.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430828355|ref|ZP_19446477.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430830304|ref|ZP_19448362.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430833511|ref|ZP_19451523.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430836213|ref|ZP_19454197.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430838884|ref|ZP_19456827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430844507|ref|ZP_19462405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430846488|ref|ZP_19464347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430850088|ref|ZP_19467854.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430854405|ref|ZP_19472118.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430858559|ref|ZP_19476186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430861967|ref|ZP_19479319.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430958963|ref|ZP_19486827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|431010066|ref|ZP_19489591.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|431194415|ref|ZP_19500268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|431228379|ref|ZP_19501520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|431259159|ref|ZP_19505336.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|431295455|ref|ZP_19507343.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|431368594|ref|ZP_19509408.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|431434730|ref|ZP_19513049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|431503033|ref|ZP_19515269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|431539213|ref|ZP_19517717.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|431626776|ref|ZP_19523015.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|431745763|ref|ZP_19534602.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|431748729|ref|ZP_19537484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|431754408|ref|ZP_19543069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|431758890|ref|ZP_19547510.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|431766316|ref|ZP_19554807.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|431766776|ref|ZP_19555237.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|431770395|ref|ZP_19558795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|431772916|ref|ZP_19561252.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|431776217|ref|ZP_19564484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|431778326|ref|ZP_19566537.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|431782317|ref|ZP_19570453.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
gi|431785297|ref|ZP_19573323.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|257812247|gb|EEV41005.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257816853|gb|EEV44181.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257826142|gb|EEV52768.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257828660|gb|EEV55267.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260074826|gb|EEW63142.1| GTP-binding protein [Enterococcus faecium C68]
gi|260077986|gb|EEW65692.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289163122|gb|EFD10969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|291592285|gb|EFF23899.1| GTP-binding protein [Enterococcus faecium E1636]
gi|291596242|gb|EFF27504.1| GTP-binding protein [Enterococcus faecium E1679]
gi|291598194|gb|EFF29292.1| GTP-binding protein [Enterococcus faecium U0317]
gi|291601095|gb|EFF31384.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|291604682|gb|EFF34167.1| GTP-binding protein [Enterococcus faecium E1162]
gi|364091113|gb|EHM33616.1| GTP-binding protein [Enterococcus faecium E4453]
gi|378938196|gb|AFC63268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|425724291|gb|EKU87175.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430439619|gb|ELA49952.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430482906|gb|ELA60005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430483650|gb|ELA60718.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430486252|gb|ELA63111.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430488787|gb|ELA65441.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430491285|gb|ELA67758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430497097|gb|ELA73156.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430536120|gb|ELA76497.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430538935|gb|ELA79204.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430545186|gb|ELA85172.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430548064|gb|ELA87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430549258|gb|ELA89090.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430556648|gb|ELA96145.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|430560561|gb|ELA99857.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|430572084|gb|ELB10954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|430574681|gb|ELB13444.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|430577254|gb|ELB15859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|430581545|gb|ELB19990.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|430584182|gb|ELB22532.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|430587374|gb|ELB25605.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|430587656|gb|ELB25877.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|430594476|gb|ELB32445.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|430603030|gb|ELB40573.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|430609969|gb|ELB47141.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|430613055|gb|ELB50078.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|430619002|gb|ELB55830.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|430626853|gb|ELB63403.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|430626899|gb|ELB63443.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|430632011|gb|ELB68302.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|430635322|gb|ELB71418.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|430637432|gb|ELB73448.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|430641551|gb|ELB77352.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|430643872|gb|ELB79575.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|430647784|gb|ELB83223.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|430647954|gb|ELB83389.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
Length = 286
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|312111696|ref|YP_003990012.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|336236071|ref|YP_004588687.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720614|ref|ZP_17694796.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216797|gb|ADP75401.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|335362926|gb|AEH48606.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365967|gb|EID43258.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
Length = 281
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 124 ALIVGIPNVGKSTLINRLAGRNIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 175
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ + E G++LA ++D ++ ++A Y L +L + R + ++LD+ ++I
Sbjct: 176 ILWPKFEEEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPERLKERYSLDDIPEEI 235
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L AAI + +R VS +V D +VA I + R G + +
Sbjct: 236 AELF--AAIGR---RRGCLVSGGAV----DYDKVAEIVLHDIRTERLGRISFE 279
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 80/145 (55%), Gaps = 10/145 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D+ + E
Sbjct: 10 MAKAKREVQEKLKLIDIVFELLDARIPMSSRNPMINEILGN-KPRIVLLNKADMAD---E 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNTTVM- 118
+ ++ + Q + + + G+++I+ + + + D + + N M
Sbjct: 66 AATQQWIAYFQQQQLRALAIDAQTGT--GIKQIVAVSKEMLKDKFAKMAAKGIKNPRPMR 123
Query: 119 --VVGVPNVGKSSIINALRSSHMKK 141
+VG+PNVGKS++IN L ++ K
Sbjct: 124 ALIVGIPNVGKSTLINRLAGRNIAK 148
>gi|385781471|ref|YP_005757642.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|418572280|ref|ZP_13136492.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
gi|364522460|gb|AEW65210.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371984764|gb|EHP01873.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
Length = 294
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 142/348 (40%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + + N +P V++LN
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVI-NQKPRVVILN---------- 58
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+K+ S+++E M+++ + + V
Sbjct: 59 -------KKDMSNLNE---------------------------MSKWEQFFIDKGYYPVS 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++A ++KK +A I T + + + M+VG+PNVG
Sbjct: 85 ----------VDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G K GVT+ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLAKRSIAQ-----TGNKPGVTKQ---QQWIKVGNALQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L + R + +D P + +LA
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQHDIERLKAHYKIDVP--EYAEILA----- 237
Query: 301 KKWF-----KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
WF KR N + D V + I R G+ D
Sbjct: 238 --WFDAIGKKRGLIRRGNEI----DYEAVIELIIYDIRNAKIGNYCFD 279
>gi|332523230|ref|ZP_08399482.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
gi|332314494|gb|EGJ27479.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
Length = 287
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK D
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKAD------- 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L ++ KE E KG+
Sbjct: 63 -LADQSRTKEWQQFYE----------SKGI------------------------------ 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ IN+ + +KK A L ++D + + + + T+ M++G+P
Sbjct: 82 ------KTLAINSKEQATVKKVTDAARAL-----MTDKIAKLRQRGIQKETLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ G++LA ++D L+ + + L Y R ++ F NL+ + DI++ +
Sbjct: 183 DQVVGLKLALTGAIKDQLLPLDEVTIFGLNYFKEYYPNRLIERFKGINLEAEAPDIIITM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K F+ +D R + +FI+ R G G+ LD+
Sbjct: 243 T----QKLGFRDDYD------RFYT-------LFIKEVRDGKLGTFTLDQ 275
>gi|295110186|emb|CBL24139.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
A2-162]
Length = 284
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 147/339 (43%), Gaps = 80/339 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK +D++IE+ D+R+P + RN + Q QN + +++LNK DL + +
Sbjct: 10 MTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQN-KSRLILLNKADLADERQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E + + H+ +V + RN
Sbjct: 69 EAWKEFFQSKGFHVVKV---DSRN------------------------------------ 89
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G +I N ++ + +K + R R + N + MV G+PN
Sbjct: 90 ---GAGMKTIQNVIQEACKEK----------------IERDRRRGIKNRPIRAMVAGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN GKA G + GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINTF------AGKACAKTGNRPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML---- 293
+ E G+RLA +++D ++ +A ++ YL + + E + + +L
Sbjct: 182 DQEVGIRLAFVGSIKDDILNMEELALKLIDYLKEHYTGLLEKRYGISEEGNAVEILGEIA 241
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPD--TGEVARIFIE 330
A+ +KK D + S +F D +G++ RI +E
Sbjct: 242 KARGCLKK---GEELDYTKASGLLFDDFRSGKIGRITLE 277
>gi|315652840|ref|ZP_07905814.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315485042|gb|EFU75450.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 281
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 136/342 (39%), Gaps = 82/342 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHES 61
R + D+ +K VDI+IE+ D+R P GRN +++ R +++LNK DL N +
Sbjct: 15 RAMSDV---IKLVDIIIEMTDARAPEAGRNPEIMELGADKSR--IIILNKADLANELANN 69
Query: 62 LIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVG 121
KEQ + E +F + R N GV ++
Sbjct: 70 RWAS-FYKEQGY--ECMFMDSRKNNGVGV---------------------------LIKA 99
Query: 122 VPNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ NV K R K+G K P+ MV G+PNVG
Sbjct: 100 IDNVSKKK-----RERDAKRGIKNRPV----------------------RAMVAGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN++ M K G K GVT+ I K I +LDTPGI P+ ++
Sbjct: 133 KSTLINSVSGRAMAK-----TGNKPGVTK---GNQWIKLKGQIELLDTPGILWPKFEDER 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +A ++ D ++ + ++ +L + + F++ + D+ +L+ A ++
Sbjct: 185 VGEMIAFIGSINDMIIDIRELGLELIKWLLKNKPEVLQERFDIKDDDDENAVLIKIAKVR 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
PD + A I + FR G G + L
Sbjct: 245 ----------GCTKKGGEPDYDKAATILVNEFRSGKLGRITL 276
>gi|303234815|ref|ZP_07321440.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
gi|302493933|gb|EFL53714.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
Length = 285
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 155/344 (45%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + I++++K VDIV+ + DSR+ + N +++ +++ +P +++LNK D+ + K
Sbjct: 13 MKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKD-KPQLILLNKMDMADPKIT 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
++ I +K + + + N K + KI PT + I +++ + +
Sbjct: 72 QNWINYFAKKNITALP------IDSKNGKNLDKIEPTTKKILEDVLSSRKDK-------- 117
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N+ KS II +M+VG+PNV
Sbjct: 118 ----NI-KSEIIR--------------------------------------MMIVGIPNV 134
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K P GVTR+ ++I K + +LDTPG+ P+ ++
Sbjct: 135 GKSTIINKLSNRQSAKTGNTP-----GVTRT-NQWIRIKGK--MELLDTPGVLWPKFEDN 186
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G+ LA ++D ++ E N+A ++ L +++D + + + ++ AI
Sbjct: 187 EIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKRYSVDTQNKETIEIMDDIAI 246
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + ++ D +V+ I I+ FRK G + L+
Sbjct: 247 RRGCLLKGKNI---------DYSKVSSIIIDEFRKTKLGRISLE 281
>gi|430870490|ref|ZP_19483258.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
gi|430558901|gb|ELA98293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
Length = 286
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R + + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISNRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|343498815|ref|ZP_08736831.1| GTPase YlqF [Vibrio tubiashii ATCC 19109]
gi|418477959|ref|ZP_13047075.1| GTPase YlqF [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342823915|gb|EGU58503.1| GTPase YlqF [Vibrio tubiashii ATCC 19109]
gi|384574387|gb|EIF04858.1| GTPase YlqF [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 314
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN+L G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINSL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + R
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPQRLQA 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++E + + L+ + ++ + V D + + I + R G+ G
Sbjct: 221 RYEIEELPESDIELMEEIGRRRGALRSGGRV---------DLHKCSEILLHELRNGTLGQ 271
Query: 340 VMLD 343
+ L+
Sbjct: 272 ITLE 275
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + KE H + I P + VQKI+ ++ ++ HR E+ N M+
Sbjct: 72 QLWIDHFEKE--HNVKAIAITTSQP--QEVQKIMELVRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN+L
Sbjct: 123 MGIPNVGKSTIINSL 137
>gi|311030148|ref|ZP_07708238.1| ribosomal biogenesis GTPase [Bacillus sp. m3-13]
Length = 285
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ + G + GVT++ VK+ ++ + +LDTPG
Sbjct: 125 ALIVGIPNVGKSTLINRLAKKNIAQ-----TGDRPGVTKA-QQWVKVGKE--LELLDTPG 176
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G RLA ++D ++ +IA + L +L R + + L+E +DI
Sbjct: 177 ILWPKFEDQEVGYRLATTGAIKDTIINLQDIAVFALRFLTAAYPDRLKERYGLEEIPEDI 236
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V L KR +S + D + A + I R G + L+R
Sbjct: 237 VELFDAIG-----SKRGCKMSGGLI----DYDKTAELVIREIRSEKLGKLSLER 281
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 11/144 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D+ ++K
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPVSSRNPMIDEIISN-KPRIILLNKADMADAK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKIL----PTLQHISDNM-TRYHRTEVYNT 115
+ E + S + KG+Q+I L+ D M +R R
Sbjct: 67 -VTREWLDYFNLPGSSTKAIAIDSQTGKGIQQIATLSKELLKEKFDKMQSRGIRPRAIRA 125
Query: 116 TVMVVGVPNVGKSSIINALRSSHM 139
++VG+PNVGKS++IN L ++
Sbjct: 126 --LIVGIPNVGKSTLINRLAKKNI 147
>gi|169824228|ref|YP_001691839.1| putative GTPase [Finegoldia magna ATCC 29328]
gi|167831033|dbj|BAG07949.1| putative GTPase [Finegoldia magna ATCC 29328]
Length = 285
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 155/344 (45%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + I++++K VDIV+ + DSR+ + N +++ +++ +P +++LNK D+ + K
Sbjct: 13 MKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKD-KPQLILLNKMDMADPKIT 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
++ I +K + + + N K + KI PT + I +++ + +
Sbjct: 72 QNWINYFAKKNITALP------IDSKNGKNLDKIEPTTKKILEDVLSSRKDK-------- 117
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N+ KS II +M+VG+PNV
Sbjct: 118 ----NI-KSEIIR--------------------------------------MMIVGIPNV 134
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K P GVTR+ ++I K + +LDTPG+ P+ ++
Sbjct: 135 GKSTIINKLSNRQSAKTGNTP-----GVTRT-NQWIRIKGK--MELLDTPGVLWPKFEDN 186
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G+ LA ++D ++ E N+A ++ L +++D + + + ++ AI
Sbjct: 187 EIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKRYSVDTQNKETIEIMDDIAI 246
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + ++ D +V+ I I+ FRK G + L+
Sbjct: 247 RRGCLLKGKNI---------DYSKVSSIIIDEFRKTKLGRISLE 281
>gi|306820819|ref|ZP_07454443.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310424|ref|ZP_10829390.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
gi|304551137|gb|EFM39104.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368876|gb|EJP21883.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
Length = 286
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I K+LK VD+VIE+ D+R P + +N + + N + ++V K+DL + +
Sbjct: 16 MKKTREGIVKNLKLVDLVIEILDARAPISTKNPDIDNMISN-KKKIIVFTKKDL--TPED 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
SL +K + ++ +D + + T+ T+ ++
Sbjct: 73 SL----------------------------KKFIDYYKNNNDYVIAINATDKAGTSSLI- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+++ +R + K K I+ N +M+VG+PNVG
Sbjct: 104 --------KLLDNIREENYNKNKNKGIINK-----------------NLRIMIVGIPNVG 138
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN + K+ G G+T+ +Q + K I +LDTPGI P+I+++
Sbjct: 139 KSTLINQIIGK-----KSAKTGDTPGITK---AQQWLKIKGNIELLDTPGILWPKIEDVS 190
Query: 241 CGMRLAACATLQDHLVGEINI-ADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G +L+ +++D ++ +I ++I + L R F++D D + K A
Sbjct: 191 VGNKLSFLGSIKDSVLEIEDIYYEFIQYLLKNKKQMRLFSEFDIDINETDFEKISDKIAT 250
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K+ +K+ ++ D ++ + FR G +G + LD
Sbjct: 251 KRG-YKKNKEI---------DYYRLSNAVLNDFRGGKYGKIQLD 284
>gi|386053525|ref|YP_005971083.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
gi|346646176|gb|AEO38801.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
Length = 287
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + +R +I +K +
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQ--------KRRVIILNKAD 61
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E+ + + +E K LP + + + E +M
Sbjct: 62 TADEKTTNEWIDYFAE---------------KGLPAVAVNAQEGKGLFKIEQAAEKLM-- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + LRS MK +A+ M++G+PNVG
Sbjct: 105 -------AEKFDRLRSKGMKP-RAI------------------------RAMILGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ + G K GVT++ Q I + +LDTPGI P+ ++ E
Sbjct: 133 KSTLINRLAKKNIAR-----TGNKPGVTKA---QQWIKVGKTLELLDTPGILWPKFEDQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +LA ++D L+ IA Y L +L R + ++ S+D + LA A K
Sbjct: 185 IGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQTWLKVETVSEDPIETLAFIAEK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R D PD A + R+ G + D
Sbjct: 245 RGLLDRYND---------PDYSRAAETVVREIRQQKLGRMSFD 278
>gi|419718995|ref|ZP_14246289.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
gi|383304864|gb|EIC96255.1| ribosome biogenesis GTP-binding protein YlqF [Lachnoanaerobaculum
saburreum F0468]
Length = 281
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 136/341 (39%), Gaps = 80/341 (23%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
R + D+ +K VDI+IE+ D+R P GRN + + + + +++LNK DL N +
Sbjct: 15 RAMSDV---IKLVDIIIEMTDARAPEAGRNPEITELGAD-KSRIIILNKADLANELANNR 70
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
KEQ + E +F + R N GV ++ +
Sbjct: 71 WAS-FYKEQGY--ECMFMDSRKNNGVGV---------------------------LIKAI 100
Query: 123 PNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 181
NV K R K+G K P+ MV G+PNVGK
Sbjct: 101 ENVSKKK-----RERDAKRGIKNRPV----------------------RAMVAGIPNVGK 133
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
S++IN++ M K G K GVT+ I K I +LDTPGI P+ ++
Sbjct: 134 STLINSVSGRAMAK-----TGNKPGVTK---GNQWIKLKGQIELLDTPGILWPKFEDERV 185
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
G +A ++ D ++ + ++ +L + + F++ + D+ +L+ A ++
Sbjct: 186 GEMIAFIGSINDMIIDIRELGLELIKWLLKNKPEVLQERFDIKDGDDENAVLIKIAKVR- 244
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
PD + A I + FR G G + L
Sbjct: 245 ---------GCTKKGGEPDYDKAATILVNEFRSGKLGRITL 276
>gi|329117496|ref|ZP_08246213.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
gi|326907901|gb|EGE54815.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
Length = 284
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 149/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK D
Sbjct: 11 MSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKAD------- 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L ++ + KE E +G+
Sbjct: 63 -LADKSMTKEWRQFYE----------KQGI------------------------------ 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ IN+ S +KK +A L ++D + R + T+ M++G+P
Sbjct: 82 ------KTLAINSKEQSTVKKVTEAAKDL-----MADKIQRLRDRGIQKETLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ + G++LA ++D L+ + + L Y R +D F NL++ + +I+M
Sbjct: 183 DQKVGLKLALTGAIKDQLLPMDEVTIFGLNYFKEHYPNRLLDRFKGINLEDEAPEIIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ +K +K +D N +F++ R G G LD+
Sbjct: 241 --SMTRKLGYKDDYDRFYN-------------LFVKEVRDGRLGVFTLDQ 275
>gi|153812957|ref|ZP_01965625.1| hypothetical protein RUMOBE_03364 [Ruminococcus obeum ATCC 29174]
gi|149830904|gb|EDM85994.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
ATCC 29174]
Length = 285
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK +D++IE+ D+R+P + RN + Q QN + +++LNK DL + +
Sbjct: 10 MTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQN-KSRLILLNKADLADERQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E +K H V+ + RN +
Sbjct: 69 EAWKEYFQKRGFH---VVKVDSRNGS---------------------------------- 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G +I N ++ + +K + R R + N + MV G+PN
Sbjct: 92 -----GMKTIQNVIQEACKEK----------------IERDRRRGIKNRPIRAMVAGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN GKA G + GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINTF------AGKACAKTGNRPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + G+RLA +++D ++ +A +++ +L + + + E V +L K
Sbjct: 182 DQQVGIRLACVGSIKDDILNMEELALWLIEHLRTNYSGLLEKRYGISEEG-TAVEILGKI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A + K+ ++ D + + + + FR G G V L+
Sbjct: 241 ARARGCLKKGEEL---------DYVKASGLLFDDFRGGKIGRVTLE 277
>gi|399543875|ref|YP_006557183.1| ribosome biogenesis GTPase A [Marinobacter sp. BSs20148]
gi|399159207|gb|AFP29770.1| Ribosome biogenesis GTPase A [Marinobacter sp. BSs20148]
Length = 315
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 31/212 (14%)
Query: 137 SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKG 196
+H ++ +A+ IL ++++ +T H + VM++G+PNVGKS++IN L K
Sbjct: 87 THNQRSEALDIL----NLAEQLTPNHDRQKSALRVMILGIPNVGKSTLINTLAGRPAAK- 141
Query: 197 KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLV 256
G + VTR+ + +K+ L+Y DTPG P++ CG RLA ++ ++
Sbjct: 142 ----TGNEPAVTRAQQA-IKLPNNILLY--DTPGFLWPKLSPAACGYRLAVTGAIRSAVL 194
Query: 257 GEINIADYILFYLNRTGNYRYVDF----FNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVS 311
++A + YL Y +F + LD P D + + A AA ++++F R
Sbjct: 195 DFEDVALFTAEYL----LAHYPEFLTSRYGLDPLPVDGLAAMDAIAA-RRRFFGRG---- 245
Query: 312 SNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
PD +V+ + + FR G G + L+
Sbjct: 246 -----GIPDLHKVSEVLLNEFRAGKLGRISLE 272
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I++ + +D++IEV D+R+PF+ N L+ +++ P++ VLNKRDL +
Sbjct: 10 MHKARKEIKEVMPQMDLIIEVVDARIPFSSENPLVP-ALRGDTPLIKVLNKRDLADPDVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + +E+ + + N R+ + ++++ +T H + VM++
Sbjct: 69 GQWQSWLERERGVKTITLTHNQRSEALD--------ILNLAEQLTPNHDRQKSALRVMIL 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|421879212|ref|ZP_16310684.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
gi|390446880|emb|CCF26804.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
Length = 279
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 145/346 (41%), Gaps = 83/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+ E+ D+R+P + RN + + + +P +L++ K DL + +
Sbjct: 12 MAKAFRLMRENLKLVDVAFELVDARIPESSRNPEVDKLIGG-KPRLLIMTKADLADPEQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K +S V+ N R+P P L +T+ R V T
Sbjct: 71 RQWKAKF---ESDGHTVLVLNTRDPRT-------PQL------VTKAARRAVEAKT---- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + +G I D R M+ G+PNVG
Sbjct: 111 ---------------AAQLARG-----------IQDQPIR----------AMITGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQA 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE---PSDDIVMLLAKA 297
GM+LA ++D + + + A +++ + V ++L+E D++ +LL A
Sbjct: 187 IGMKLALTGAVKDTIFSKDDAALFLISFFRDYRPEAIVARYHLEENAFEQDNVQILL--A 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K FK +D +S + + RKG G+ LD
Sbjct: 245 ITNKLGFKDDYDKASERL-------------LNDLRKGKLGAFTLD 277
>gi|422338234|ref|ZP_16419194.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355372872|gb|EHG20211.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 289
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVASSLLRKMLEQGRWESLKERYKLLEEDRDDNVLENILSKIALR 253
>gi|356528601|ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]
Length = 399
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 167 YNTTVMVVGVPNVGKSSIINAL----RSSHMKKGKA--VPVGPKAGVTRSVMSQVKISEK 220
Y TVM+VG+PNVGKS+++NAL R S +KGK V P+ G T+ + S KI
Sbjct: 160 YTATVMLVGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRS-FKIGSH 218
Query: 221 PLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
P IY+LDTP I P++ N++ +L + D LV +A + L N + Y+
Sbjct: 219 PNIYVLDTPAILSPKVPNVDILSKLILTGAIGDCLVRRKEVAQHFLAIHNSSEQYK 274
>gi|296328417|ref|ZP_06870943.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296154491|gb|EFG95283.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 289
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 133/300 (44%), Gaps = 73/300 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+ +E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVALEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVY---NTTVMVVGVPN 124
KEQ EV+ + V+K+ ++++S + +T ++V+G+PN
Sbjct: 78 FKEQDFADEVVEMSAE--TGYNVKKLYEAIEYVSKERKEKLLKKGLKKVSTRIIVLGIPN 135
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
VGKS +IN + VGK+S
Sbjct: 136 VGKSRLINRI--------------------------------------------VGKNS- 150
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
VG K G TR V+I E I +LDTPGI P+ ++ GM
Sbjct: 151 --------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGMN 193
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
LA ++D ++ ++A +L + G + + + L+E DD V+ +L+K A++
Sbjct: 194 LAITGAIRDEILPIEDVACSLLRKMLEQGRWESLKERYKLLEEDRDDKVLENILSKIALR 253
>gi|256750723|ref|ZP_05491608.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|256750306|gb|EEU63325.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
Length = 277
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 143/344 (41%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I +LK VD+V E+ D+R+P + RN + D++ +K
Sbjct: 9 MAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDID----------------DIVKNKKR 52
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ K I+++ + + V+ +++T + E+ T V
Sbjct: 53 LILLNKADLADDVITDLWIEFFKGKGIEAVK---------VNSITGFGLKEINEATKRVC 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+++ K ++P L+ I +VGVPNVG
Sbjct: 104 ---------------QDILERKKQKGMIPRLRGI------------------IVGVPNVG 130
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN L S K G K GVTR+ + +K P +LDTPGI P+ D+ +
Sbjct: 131 KSTFINKLIGS-----KRAKTGDKPGVTRT-LHWIKT---PYFDLLDTPGILWPKFDDKK 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+ LA ++D ++ IA ++ L + + + +D+ D+ LL +
Sbjct: 182 VGIMLAITGAIKDEILDIEEIALNLVAILKKYYPNYLMSRYKIDKIVDEDFELLKEIG-- 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR ++ V DT + + I +E FRKG G + L+R
Sbjct: 240 ---RKRGCLIAGGEV----DTLKTSHILLEDFRKGKLGRISLER 276
>gi|209809448|ref|YP_002264986.1| ribosomal biogenesis GTPase [Aliivibrio salmonicida LFI1238]
gi|208011010|emb|CAQ81423.1| putative GTP-binding protein [Aliivibrio salmonicida LFI1238]
Length = 311
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 21/179 (11%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+ + + G + VTR Q +I+ + + +
Sbjct: 114 NVRTMIMGIPNVGKSTIINTL------AGRMIAITGNQPAVTRR---QQRINLQNGVVLS 164
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE- 285
DTPGI P+++N G RLAA ++D + +A Y + YL + R + +NL++
Sbjct: 165 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAQQYPERLKERYNLEDL 224
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
P +D+ ++ AI + R S + ++ + + I + R G+ G + L+R
Sbjct: 225 PDNDLELM---EAIGR---SRGCLQSGGRINIY----KASEILLHELRSGTLGQLTLER 273
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ S++ +P + VLNKRDL + +
Sbjct: 10 MHKAQKEIAEVIPKMDVIIEVLDARIPFSSENPMIA-SLRQDKPCIKVLNKRDLADPEVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L E + KEQ + + TN NP+ + KI+ + + HR + N M+
Sbjct: 69 QLWIEHLEKEQGVTAMAVTTN--NPD--EIHKIMERCRKLVP-----HREAMGKNVRTMI 119
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 120 MGIPNVGKSTIINTL 134
>gi|395243567|ref|ZP_10420552.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
gi|394484187|emb|CCI81560.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
Length = 279
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 138/349 (39%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN ++ Q + +P +++LNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKK-KPHIVILNKSDLADPIQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV- 119
L + +KE S + + N N + K++ + + + N + V
Sbjct: 70 KLWTKYFQKEGSFVMSM--DAQHNTNMTALFKLIKL--AAKEKTEKLEQKGASNPVIRVA 125
Query: 120 -VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
G+PN GKS+IIN L
Sbjct: 126 LAGIPNCGKSTIINRL-------------------------------------------- 141
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VG+++ I VG K GVT+ Q + K + ILDTPGI P+ +
Sbjct: 142 VGRNAAI---------------VGDKPGVTK---GQSWLKTKTNVQILDTPGILWPKFSD 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL--NRTGNYRYVDFFNLDEPSD--DIVMLL 294
G +LAAC +++ + ++A + + +L N T + N+D+ +D D +LL
Sbjct: 184 QTVGYKLAACGAIKEDIFHADDVALFAINFLKENYTKDLEKFARLNIDQINDLSDPDLLL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + M D ++ + RKG G + D
Sbjct: 244 E---------------MTQNYGMRDDYERFSKFMLLRLRKGRIGRITFD 277
>gi|19746107|ref|NP_607243.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS8232]
gi|94994427|ref|YP_602525.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10750]
gi|19748281|gb|AAL97742.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|94547935|gb|ABF37981.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
Length = 282
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIKRLRDRGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFY-------SLFVKEVRDGKLGQYTLDQ 275
>gi|386362702|ref|YP_006072033.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
gi|350277111|gb|AEQ24479.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
Length = 282
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIKRLRDRGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQLG----FKDDYD------RFY-------SLFVKEVRDGKLGQYTLDQ 275
>gi|339450881|ref|ZP_08654251.1| GTP-binding protein YlqF [Leuconostoc lactis KCTC 3528]
Length = 281
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 101/355 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V E+ D+R+P + RN + + + + +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLKLVDVVFELVDARIPESSRNPEVDKLIGS-KPRLLIMTKADLADP--- 67
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
E+ R + H V+ + R+P P L +T+ R V
Sbjct: 68 ----EQTRAWKQHFEAQGHTVLVLDTRDPRT-------PQL------VTKAARRAV---- 106
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
A +++ + +G I D R ++ G+
Sbjct: 107 ---------------EAKKAAQLARG-----------IQDQPIR----------ALIAGI 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+
Sbjct: 131 PNVGKSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKF 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--------YVDFFNLDEPSD 288
++ G++LA ++D + + D +LF L+ NYR ++D DE S
Sbjct: 183 EDQTVGLKLALTGAVKDTIFAK---DDAVLFLLDFFRNYRPEAIISRYHLDANVFDEASV 239
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I++ + +K FK ++ +S V + RKG G LD
Sbjct: 240 QILLDIT----QKLGFKDDYEKASERV-------------LNDLRKGKLGPFTLD 277
>gi|256965039|ref|ZP_05569210.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|257089970|ref|ZP_05584331.1| GTP-binding protein [Enterococcus faecalis CH188]
gi|256955535|gb|EEU72167.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|256998782|gb|EEU85302.1| GTP-binding protein [Enterococcus faecalis CH188]
Length = 283
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 10 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 69 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 124 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 152
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 153 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R ++ + L E P+ + +M
Sbjct: 182 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLMERYGLTEEELFLPAPEQLM 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 242 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 276
>gi|307273137|ref|ZP_07554383.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|312903394|ref|ZP_07762574.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|422689281|ref|ZP_16747393.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
gi|306510122|gb|EFM79146.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|310633270|gb|EFQ16553.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|315577620|gb|EFU89811.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
Length = 292
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 19 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 77
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 78 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 132
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 133 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 161
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 162 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 190
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R ++ + L E P+ + +M
Sbjct: 191 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLMERYGLTEEELFLPAPEQLM 250
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 251 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 285
>gi|6323744|ref|NP_013815.1| Mtg1p [Saccharomyces cerevisiae S288c]
gi|2497147|sp|Q03151.1|MTG1_YEAST RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|854434|emb|CAA89898.1| unknown [Saccharomyces cerevisiae]
gi|256273495|gb|EEU08429.1| Mtg1p [Saccharomyces cerevisiae JAY291]
gi|285814099|tpg|DAA09994.1| TPA: Mtg1p [Saccharomyces cerevisiae S288c]
gi|392297258|gb|EIW08358.1| Mtg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 367
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQVNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>gi|260773776|ref|ZP_05882691.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio metschnikovii
CIP 69.14]
gi|260610737|gb|EEX35941.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio metschnikovii
CIP 69.14]
Length = 314
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR EV N M++G+PNVGKS+IIN L G+A+ G + VTR Q +I+
Sbjct: 110 HREEVGKNVRTMIMGIPNVGKSTIINTL------AGRAIAQTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + ++A Y + YL + +
Sbjct: 161 QNGVVLSDTPGILWPKVENPHSGFRLAATGAIKDTAMEYEDVAFYTVEYLAKHYADNLIA 220
Query: 280 FFNLD-EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ +D P D+ + A KR + V D + + I + R+G G
Sbjct: 221 RYQVDGTPGSDVEWMEAIGQ------KRGALRAGGRV----DLHKASEILLHELRQGVLG 270
Query: 339 SVMLDR 344
+ L+R
Sbjct: 271 KITLER 276
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+P++ N L+ Q ++ +P + VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQIDVIIEVLDARIPYSSENPLISQ-LRGDKPCIKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
L + +EQ + I T N + V +IL + + HR EV N M+
Sbjct: 72 ELWIAHLEQEQGVKAMAITT----ANPQEVHRILELCRKMVP-----HREEVGKNVRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
>gi|417925852|ref|ZP_12569267.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
gi|341590777|gb|EGS34008.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
Length = 285
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 154/344 (44%), Gaps = 76/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + I++++K VDIV+ + DSR+ + N +++ +++ +P +++LNK D+ + K
Sbjct: 13 MKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKD-KPQLILLNKMDMADPKIT 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
++ I +K + + N K + KI PT + I +++ + +
Sbjct: 72 QNWINYFAKKNITALP------IDGKNGKNLDKIEPTTKKILEDVLSNRKDK-------- 117
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
N+ KS II +M+VG+PNV
Sbjct: 118 ----NI-KSEIIR--------------------------------------MMIVGIPNV 134
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+IIN L + K P GVTR+ ++I K + +LDTPG+ P+ ++
Sbjct: 135 GKSTIINKLSNRQSAKTGNTP-----GVTRT-NQWIRIKGK--MELLDTPGVLWPKFEDN 186
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
E G+ LA ++D ++ E N+A ++ L +++D + + + ++ AI
Sbjct: 187 EIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKRYSVDTQNKETIEIMDDIAI 246
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + ++ D +V+ I I+ FRK G + L+
Sbjct: 247 RRGCLLKGKNI---------DYSKVSSIIIDEFRKTKLGRISLE 281
>gi|422317044|ref|ZP_16398413.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
gi|404590282|gb|EKA92731.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
Length = 292
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ K E I +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-EKKELEIWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNLKKFYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AGVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGVNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ +IA ++ + + G + + + L+E DD +M +L+K A++
Sbjct: 196 ISGAIRDEILPIEDIACSLIRKMLKQGRWTSLKDRYKLLEEDRDDEIMENILSKVALR 253
>gi|383480029|ref|YP_005388923.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|383493945|ref|YP_005411621.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
gi|378928019|gb|AFC66225.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|378929673|gb|AFC68090.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
Length = 282
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----SKELMADKIQRLRERGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|260588680|ref|ZP_05854593.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|331081971|ref|ZP_08331099.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260541155|gb|EEX21724.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|330405566|gb|EGG85096.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 281
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 155/345 (44%), Gaps = 77/345 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D++IEV D+R+PF+ RN + + +N + +++LNK DL + +
Sbjct: 10 MTKAKRMMQENIKLIDLIIEVVDARIPFSSRNPDIDELGKN-KARLILLNKSDLADEREN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + + + V+ N ++ G++ +LP + R
Sbjct: 69 EKWAEYFKSKGYY---VVKLNAKS--GAGIKGVLPVVMESCKEKLERDR----------- 112
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K IIN PI MVVG+PNVG
Sbjct: 113 ------KRGIINR------------PI----------------------RAMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+ INA GKA G K GVT+ ++I++ + +LDTPGI P+ ++
Sbjct: 133 KSTFINAF------AGKACTKTGNKPGVTKG-KQWIRINKN--VELLDTPGILWPKFEDQ 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G +LA +++D ++ ++ +L YL+ + ++++E S++ + +L + A
Sbjct: 184 SVGAKLAMVGSIKDEILNLEELSLELLKYLHESYEGVLTKRYDIEE-SENALSMLEQVAE 242
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K ++ ++ D + A I +E FR G G + L++
Sbjct: 243 NRKCIQKGNEL---------DYLKAANILLEEFRNGKIGKITLEK 278
>gi|148977011|ref|ZP_01813657.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
gi|417950166|ref|ZP_12593293.1| GTPase YlqF [Vibrio splendidus ATCC 33789]
gi|145963671|gb|EDK28932.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3]
gi|342807107|gb|EGU42308.1| GTPase YlqF [Vibrio splendidus ATCC 33789]
Length = 311
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREEIGKNIRTMIMGIPNVGKSTIINCL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 158 QNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPHLLQE 217
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ ++E P DI ++ +A +K+ RA D + + I + R G+ G
Sbjct: 218 RYQIEELPESDIELM--EAIGRKRGALRAGG--------HIDLHKCSEILLHELRNGTLG 267
Query: 339 SVMLD 343
V L+
Sbjct: 268 KVTLE 272
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 17/138 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SSLRGDKPCVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCR---NPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTT 116
E KEQ + I T+ + N + V+K+ P HR E+ N
Sbjct: 69 ERWIEHFEKEQGVKAIAITTSVKEEVNHIMELVRKLAP------------HREEIGKNIR 116
Query: 117 VMVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IIN L
Sbjct: 117 TMIMGIPNVGKSTIINCL 134
>gi|386317016|ref|YP_006013180.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494750|ref|YP_006904596.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417928741|ref|ZP_12572129.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127303|gb|ADX24600.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|340766615|gb|EGR89141.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410439910|emb|CCI62538.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 282
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 85/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADATRT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K E I + + K V + L ++D + R
Sbjct: 70 K--EWKAYYESQGIKTLAINSKEQSTVKKVTEAAKEL--MADKIKR-------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LR ++K E T M++G+PN G
Sbjct: 112 -------------LRDRGIQK-----------------------ETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFEDEL 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKA 297
G++LA ++D L+ + + L Y R F L+E + +I+M L +
Sbjct: 186 VGLKLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLTRQ 245
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
FK +D R + +F++ R G G LD+
Sbjct: 246 L----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|21910353|ref|NP_664621.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS315]
gi|28895930|ref|NP_802280.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SSI-1]
gi|21904550|gb|AAM79424.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
gi|28811180|dbj|BAC64113.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 282
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + I+D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELIADKIKRLRDRGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFY-------SLFVKEVRDGKLGQYTLDQ 275
>gi|156839338|ref|XP_001643361.1| hypothetical protein Kpol_467p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113968|gb|EDO15503.1| hypothetical protein Kpol_467p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 387
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 83/320 (25%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV------QNIRPMVLVLNKRDLI- 55
+ ++ ++ L +++++E+ D R P + RN L Q + ++ +V+ K +I
Sbjct: 37 KAVQRFKRMLPQLNLILELRDLRAPLSTRNPLFDQLLLGKHNNSTLQKLVVYTKKDTMIS 96
Query: 56 -NSKHESLIEEKVRKEQSHISE-VIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEV 112
N K I K++ ++E + NC+N + + KI+ +H+++
Sbjct: 97 ENHKENERIINKLKVWHGELNEKFMVINCKNNKDVTNLMKIIKWTKHVTEE--------- 147
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
N+ V+ +G V+
Sbjct: 148 -NSNVLPMGY-----------------------------------------------KVL 159
Query: 173 VVGVPNVGKSSIINALRS------SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL---I 223
+ G+PNVGKS+++N+LR + KK K G +AG+TRS ++IS P I
Sbjct: 160 ISGMPNVGKSTLVNSLRGLSGVKRTDKKKQKVARTGGEAGITRSTSEVIRISNDPGKSDI 219
Query: 224 YILDTPGISLP-RIDNLECGM-RLAACATLQDHLVGEINIADYILFYL---NRTGNYRYV 278
Y++DTPGI LP R+ + M L+ C ++ L+ + ADY+L+ + N G RY
Sbjct: 220 YLIDTPGIGLPGRLTHSTNKMIVLSLCGCVKSSLIDPVIQADYLLYLMNLQNAQGLERYP 279
Query: 279 DFFNLDEPSDDIVMLLAKAA 298
+ P++++ +L + A
Sbjct: 280 K--ESEYPTNNVTQVLKRVA 297
>gi|421893234|ref|ZP_16323784.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
gi|379981030|emb|CCG27506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
Length = 282
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 142/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIQRLRERGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFY-------SLFVKEVRDGKLGQYTLDQ 275
>gi|336430713|ref|ZP_08610652.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336016806|gb|EGN46582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 279
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 81/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D++IE+ D+R+P + RN + + +N +VL +NK DL +
Sbjct: 10 MTKARRAMQEDIKLIDLIIELVDARIPLSSRNPDIDELGRNKARLVL-MNKSDLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P C +
Sbjct: 65 ------------------------PAC----------------------NRAWTAWFQEQ 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHIS-DNMTRYHRTEVYNTTV--MVVGVP 177
G+ KS INA MK I +Q + + + R + + N V MVVG+P
Sbjct: 79 GI----KSLEINAQSGQGMKA-----IQGAVQEVCREKIERDRKRGILNRPVRAMVVGIP 129
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+ IN+ K G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 130 NVGKSTFINSFAGKACTK-----TGNKPGVTKG-KQWIRLNKG--LELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ GM+LA ++ D ++ +A ++ +L + + L + V +L A
Sbjct: 182 DQSVGMKLAFIGSMNDEIIIMDELAVDLISFLQEWYLPLLKERYGLT-GEETPVQVLEAA 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A ++K +K+ + PD A++ + FR G G + L+R
Sbjct: 241 AERRKCYKKGGE---------PDLSRAAQLVTDDFRSGRLGRISLER 278
>gi|163752555|ref|ZP_02159739.1| GTP-binding protein [Shewanella benthica KT99]
gi|161327551|gb|EDP98751.1| GTP-binding protein [Shewanella benthica KT99]
Length = 303
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 80/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D+VIEV D+R+P++ N ++ +++ +P + +LNK DL + +
Sbjct: 1 MHKARKEIEEVMPQIDLVIEVLDARIPYSSENPVIS-TLRGDKPCIKLLNKSDLADPEVT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + +EQ
Sbjct: 60 QRWIEYLEREQ------------------------------------------------- 70
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV K+ I L++S +KK +P L + N + + + M++G+PNVG
Sbjct: 71 GV----KAMAITTLQASQVKK---IPDL--CRKFVPNRDKLEK----DIRTMIMGIPNVG 117
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT+ Q +I+ + I + DTPGI P++DN +
Sbjct: 118 KSTIINTLAGRMIAK-----TGNEPAVTKV---QQRINLRNGIVLSDTPGILWPKVDNEK 169
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
RLA ++D + ++A + Y + + + L E D + LL K
Sbjct: 170 SSYRLAITGAIKDTAMEYEDVAMFAAEYFLKAYPEAIAERYKLTELPDTDIELLEAIGRK 229
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + D +V+ + + FR G G + L+
Sbjct: 230 RGALRPGGRI---------DLHKVSELVLHEFRSGKIGQLSLE 263
>gi|336392851|ref|ZP_08574250.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 285
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 140/353 (39%), Gaps = 95/353 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ L VDIV+E+ D+R+P RN +L Q +Q +P +++LNK DL +
Sbjct: 11 MAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQ-KPRLMILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P L N + H
Sbjct: 66 ----------------------------------PALNAAWINYFKQH------------ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+P + S N K+ + + ++D + R + N + + +G+PN
Sbjct: 80 GLPAISIDSQHNHNVQQIEKQAQVI--------LADKIARQQARGIKNKPIRAICIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+I+N L +K+ A+ G GVT+ Q + + +LDTPGI P+ ++
Sbjct: 132 VGKSTILNRL----VKRNVAI-TGNHPGVTKK---QQWLKAGKSLELLDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDF-FNLDEPSDDIV 291
G +LA ++D L ++A Y L + + YR + F L +P D ++
Sbjct: 184 PLVGKKLALTGAIKDSLYHADDVALYALAFFKQYFPERLQKRYRLTEADFELTDP-DLLL 242
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ A +K D S R+ D RKG G LD+
Sbjct: 243 KITADLGLKD-------DYERASERLILDC-----------RKGKLGRYTLDQ 277
>gi|207342339|gb|EDZ70130.1| YMR097Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 367
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQGNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + L C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLGLCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>gi|19225001|gb|AAL86477.1|AC077693_16 putative GTPase domain containing protein [Oryza sativa Japonica
Group]
gi|31433619|gb|AAP55111.1| expressed protein [Oryza sativa Japonica Group]
gi|125533031|gb|EAY79596.1| hypothetical protein OsI_34736 [Oryza sativa Indica Group]
gi|125575767|gb|EAZ17051.1| hypothetical protein OsJ_32544 [Oryza sativa Japonica Group]
Length = 370
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 61/290 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQNIRPMVLVLNKRDLINSKH 59
M + I L VD+V+EV D+R+P + L ++S + R ++VLNK DL +
Sbjct: 28 MAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPS- 86
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT-TVM 118
+ K +++ + +C N + I L + + E T TV+
Sbjct: 87 ------QTEKWMAYMKQT-SCSCVALNSHSREGIKELLNAVRAKIREIKLGESDCTGTVL 139
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+VG+PNVGKS+I+NA+ HR + +G
Sbjct: 140 LVGIPNVGKSAIVNAM---------------------------HR-------IGRIGAAE 165
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GK + +A+ SSH G T+ + S K++ P IY+LDTPG+ P N
Sbjct: 166 KGK--LKHAIVSSH------------PGETKDI-SGYKVASHPNIYVLDTPGVLSPVFFN 210
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD 288
E G LA ++D ++ E IA ++L LN Y+ + N+++ D
Sbjct: 211 DESGPLLALTGAIKDSMMQEFEIAQFLLAILNSRETYK--KWENMNQAGD 258
>gi|307289193|ref|ZP_07569149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
gi|306499902|gb|EFM69263.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
Length = 292
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 19 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 77
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 78 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 132
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 133 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 161
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 162 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 190
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R + + L E P+ + +M
Sbjct: 191 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQLM 250
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 251 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 285
>gi|325262273|ref|ZP_08129010.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
gi|324032105|gb|EGB93383.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
Length = 283
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + +N + +++LNK DL K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARIPVSSRNPEIDDLGKN-KARLILLNKSDLAEDKW- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + Y + V V
Sbjct: 68 ----------------------------------------NDAWAEYFKGKGY-SVVKVN 86
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G SI ++ + +K + R + + N V MVVG+PN
Sbjct: 87 SKKGGGIKSIQGVIQEACKEK----------------IERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAV-PVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACTKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRT------GNYRYVDFFNLDEPSDDIV 291
+ G+RLA +++D ++ +A ++ +L ++ G Y+ E S+D
Sbjct: 182 DQTVGLRLAFIGSIKDEILNSEELAMELIGFLKQSYPGILKGKYQI-------EESEDHF 234
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L A + + ++ DT + AR+ ++ FR G G + L+
Sbjct: 235 ECLRNIAESRHCLVKGSEL---------DTEKAARLLLDDFRNGRIGKITLE 277
>gi|254302953|ref|ZP_04970311.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323145|gb|EDK88395.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 289
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + G + + + L+E DD ++ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVASSLLRKMLEQGRWESLKERYKLLEEDRDDNILENILSKIALR 253
>gi|227518839|ref|ZP_03948888.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227553456|ref|ZP_03983505.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229545736|ref|ZP_04434461.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|229549925|ref|ZP_04438650.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|293382907|ref|ZP_06628825.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|293389604|ref|ZP_06634061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|307270932|ref|ZP_07552215.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|307274872|ref|ZP_07556035.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|307277979|ref|ZP_07559063.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|307291910|ref|ZP_07571779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|312899501|ref|ZP_07758831.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|312907623|ref|ZP_07766614.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|312910240|ref|ZP_07769087.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|312951584|ref|ZP_07770480.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|384513330|ref|YP_005708423.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|422685902|ref|ZP_16744115.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|422692935|ref|ZP_16750950.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|422695067|ref|ZP_16753055.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|422699129|ref|ZP_16757002.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|422701845|ref|ZP_16759685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|422704561|ref|ZP_16762371.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|422706577|ref|ZP_16764275.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|422708558|ref|ZP_16766086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|422714534|ref|ZP_16771260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|422715792|ref|ZP_16772508.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|422719008|ref|ZP_16775659.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|422722435|ref|ZP_16778985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|422727138|ref|ZP_16783581.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|422728820|ref|ZP_16785226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|422733485|ref|ZP_16789787.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|422734226|ref|ZP_16790520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|422739090|ref|ZP_16794273.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|422869271|ref|ZP_16915791.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|424673132|ref|ZP_18110075.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|424676678|ref|ZP_18113549.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|424681506|ref|ZP_18118293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|424683696|ref|ZP_18120446.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|424686400|ref|ZP_18123068.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|424690328|ref|ZP_18126863.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|424695421|ref|ZP_18131804.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|424696840|ref|ZP_18133181.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|424699774|ref|ZP_18135985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|424703213|ref|ZP_18139347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|424707290|ref|ZP_18143274.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|424717050|ref|ZP_18146348.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|424720628|ref|ZP_18149729.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|424724176|ref|ZP_18153125.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|424733767|ref|ZP_18162322.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|424743934|ref|ZP_18172239.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|424750558|ref|ZP_18178622.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|430360682|ref|ZP_19426403.1| GTP-binding protein [Enterococcus faecalis OG1X]
gi|227073710|gb|EEI11673.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227177413|gb|EEI58385.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229304938|gb|EEN70934.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|229309186|gb|EEN75173.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|291079572|gb|EFE16936.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|291081221|gb|EFE18184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|306496908|gb|EFM66456.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|306505376|gb|EFM74562.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|306508320|gb|EFM77427.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|306512430|gb|EFM81079.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|310626651|gb|EFQ09934.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|310630550|gb|EFQ13833.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|311289513|gb|EFQ68069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|311293371|gb|EFQ71927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|315027180|gb|EFT39112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|315029297|gb|EFT41229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|315034057|gb|EFT45989.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|315037066|gb|EFT48998.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|315145133|gb|EFT89149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|315147350|gb|EFT91366.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|315150450|gb|EFT94466.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|315152394|gb|EFT96410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|315155666|gb|EFT99682.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|315158163|gb|EFU02180.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|315160533|gb|EFU04550.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|315164102|gb|EFU08119.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|315168948|gb|EFU12965.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|315169818|gb|EFU13835.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|315172217|gb|EFU16234.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|315575778|gb|EFU87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|315580430|gb|EFU92621.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|327535219|gb|AEA94053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|329571608|gb|EGG53289.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|402351213|gb|EJU86105.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|402352942|gb|EJU87778.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|402356298|gb|EJU91032.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|402364455|gb|EJU98891.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|402364694|gb|EJU99129.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|402367254|gb|EJV01595.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|402368359|gb|EJV02675.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|402375703|gb|EJV09683.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|402377169|gb|EJV11080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|402384888|gb|EJV18429.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|402385218|gb|EJV18758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|402386398|gb|EJV19904.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|402391097|gb|EJV24413.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|402393099|gb|EJV26329.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|402395660|gb|EJV28747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|402399610|gb|EJV32476.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|402406536|gb|EJV39086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|429512797|gb|ELA02394.1| GTP-binding protein [Enterococcus faecalis OG1X]
Length = 292
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 19 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 77
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 78 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 132
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 133 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 161
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 162 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 190
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R + + L E P+ + +M
Sbjct: 191 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQLM 250
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 251 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 285
>gi|323353076|gb|EGA85376.1| Mtg1p [Saccharomyces cerevisiae VL3]
Length = 339
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 12 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 71
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 72 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 127
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 128 TGMPNVGKSTLINSLR--------------TIFHNQVNMGR------------------- 154
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 155 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 200
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 201 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 260
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 261 YDVLRRLQVNK 271
>gi|154483563|ref|ZP_02026011.1| hypothetical protein EUBVEN_01267 [Eubacterium ventriosum ATCC
27560]
gi|149735473|gb|EDM51359.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
ventriosum ATCC 27560]
Length = 291
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MVVG+PNVGKS+ INA A G K GVT+ +K+++ + +LDTPG
Sbjct: 135 AMVVGIPNVGKSTFINAYAGRA-----AAKTGNKPGVTKG-KQWIKLNKN--LELLDTPG 186
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ DN GM LA ++ D+++ +A ++ L T V+ + ++ D +
Sbjct: 187 ILWPKFDNQTIGMHLAFIGSINDNILDVTELAYQLVKLLATTYPKVVVERYKIEGHEDPL 246
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
++ A + R + N PD + ++I ++ FR G G + LD+
Sbjct: 247 QVMYQVAEV------RGCKLKGNQ----PDLEKTSKIIMDDFRAGKLGRITLDK 290
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI----N 56
M + ++ +++ +K +D+VIE+ D+R+P + RN + +N +VL LNK DL N
Sbjct: 22 MTKAVRQMKEDIKLIDLVIELLDARIPLSSRNPDIDDLGKNKARLVL-LNKSDLADETDN 80
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNT 115
+K ++K +I + N +G+++I +Q + + R + + N
Sbjct: 81 NKWIQYFKDK---------GIIALKINSKNKQGIKEINNAVQIACKEKIERDKKRGIINR 131
Query: 116 TV--MVVGVPNVGKSSIINA 133
V MVVG+PNVGKS+ INA
Sbjct: 132 PVRAMVVGIPNVGKSTFINA 151
>gi|29376208|ref|NP_815362.1| GTPase [Enterococcus faecalis V583]
gi|255972708|ref|ZP_05423294.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255975760|ref|ZP_05426346.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256619149|ref|ZP_05475995.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256853211|ref|ZP_05558581.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256959065|ref|ZP_05563236.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256961842|ref|ZP_05566013.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|257079096|ref|ZP_05573457.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|257082465|ref|ZP_05576826.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|257085097|ref|ZP_05579458.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|257086658|ref|ZP_05581019.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257416179|ref|ZP_05593173.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257419381|ref|ZP_05596375.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257422525|ref|ZP_05599515.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294781633|ref|ZP_06746969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|300861139|ref|ZP_07107226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|384518682|ref|YP_005705987.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397699964|ref|YP_006537752.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|421512269|ref|ZP_15959079.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|428767091|ref|YP_007153202.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|430370587|ref|ZP_19429112.1| GTP-binding protein [Enterococcus faecalis M7]
gi|29343671|gb|AAO81432.1| GTPase of unknown function [Enterococcus faecalis V583]
gi|255963726|gb|EET96202.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255968632|gb|EET99254.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256598676|gb|EEU17852.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256711670|gb|EEU26708.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256949561|gb|EEU66193.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256952338|gb|EEU68970.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|256987126|gb|EEU74428.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|256990495|gb|EEU77797.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|256993127|gb|EEU80429.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|256994688|gb|EEU81990.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257158007|gb|EEU87967.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257161209|gb|EEU91169.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257164349|gb|EEU94309.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294451329|gb|EFG19795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|295113050|emb|CBL31687.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
7L76]
gi|300850178|gb|EFK77928.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|323480815|gb|ADX80254.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397336603|gb|AFO44275.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|401674613|gb|EJS80961.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|427185264|emb|CCO72488.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|429515351|gb|ELA04867.1| GTP-binding protein [Enterococcus faecalis M7]
Length = 283
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 10 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 69 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 124 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 152
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 153 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R + + L E P+ + +M
Sbjct: 182 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQLM 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 242 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 276
>gi|373857305|ref|ZP_09600047.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
gi|372452955|gb|EHP26424.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
Length = 297
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PN GKS++IN L ++ K P GVT++ +K+ ++ + +LDTPG
Sbjct: 123 AMIVGIPNAGKSTLINRLAKKNIAKTGNTP-----GVTKA-QQWIKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ D+ E G++LA ++D L+ IA Y L YL R R + + L+ +D
Sbjct: 175 ILWPKFDDQEVGLKLAVTGAIKDTLLNMYEIAAYALQYLERVYPERLKERYKLEMIPEDT 234
Query: 291 V 291
V
Sbjct: 235 V 235
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDI+ E+ D+R+PF+ RN ++ + +Q+ +P +++LNK D+ + +
Sbjct: 10 MAKARREVTEKLKLVDIIFELVDARVPFSSRNPMIDEIIQH-KPRLVLLNKADMADRE-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN---TTV 117
+ ++ +R Q + + N + G+++I+ + + ++ N
Sbjct: 67 -VTKQWIRYFQDNGVAALAINSQ--EGIGMKEIVIEAKKLLSEKFDKMKSRGINPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
M+VG+PN GKS++IN L ++ K P + Q
Sbjct: 124 MIVGIPNAGKSTLINRLAKKNIAKTGNTPGVTKAQQ 159
>gi|197337347|ref|YP_002158107.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio fischeri MJ11]
gi|423687828|ref|ZP_17662631.1| GTPase YlqF [Vibrio fischeri SR5]
gi|197314599|gb|ACH64048.1| ribosome biogenesis GTP-binding protein YlqF [Vibrio fischeri MJ11]
gi|371493016|gb|EHN68620.1| GTPase YlqF [Vibrio fischeri SR5]
Length = 311
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+PF+ N L+ S++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVVPKIDVIIEVLDARIPFSSENPLI-SSIRKDKPCVKVLNKRDLSDPEVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E + KEQ + + T N + + KI+ + + + N M++
Sbjct: 69 QLWIEHLEKEQGVTAMAVTTE----NPEEIHKIM----EVCRKLVPHREAMGKNVRTMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN L
Sbjct: 121 GIPNVGKSTIINTL 134
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+ + + +
Sbjct: 114 NVRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINLQNGVVLS 164
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE- 285
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + LDE
Sbjct: 165 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPERLKERYKLDEL 224
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P +D+ ++ A R + + ++ + + I + R G G V L+
Sbjct: 225 PDNDLELMEAIGR------SRGCLQAGGRINLY----KASEILLHELRSGVLGQVTLE 272
>gi|381153407|ref|ZP_09865276.1| ribosome biogenesis GTP-binding protein YlqF [Methylomicrobium
album BG8]
gi|380885379|gb|EIC31256.1| ribosome biogenesis GTP-binding protein YlqF [Methylomicrobium
album BG8]
Length = 306
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++G+PNVGKS++IN L + K G + VT++ Q +I+ + +LDTPG
Sbjct: 117 ALIMGIPNVGKSTLINILAGRTVAK-----TGNEPAVTKT---QQRIAIGSNVVLLDTPG 168
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FNLDE- 285
+ P I+N G+RLAA ++D + +A ++ YLNR +Y D+ F L+
Sbjct: 169 MLWPNIENRHSGLRLAATGAIKDTALHHEAVAAFVAGYLNR----QYPDYLRERFRLERI 224
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P D +L +A +K+ RA D + A+I + FR G+ G V L+
Sbjct: 225 PESDEAVL--EAISRKRGCLRAGGQM--------DLDKAAKILLAEFRAGTVGRVTLE 272
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I++ L DIVIEV D+R+PF+ N LL S++ +P + VL+K DL + +
Sbjct: 10 MHKAGKEIKEILPKTDIVIEVLDARIPFSSANPLL-ASLRGDKPCLKVLSKSDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ ++ + +EQ + + R P + ++KI P L NM +++
Sbjct: 69 AVWQDYLEREQG--VKTLALTSREP--EKIRKI-PAL---CRNMLAGQMQNDRIVHALIM 120
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHIS 155
G+PNVGKS++IN L + K G + T Q I+
Sbjct: 121 GIPNVGKSTLINILAGRTVAKTGNEPAVTKTQQRIA 156
>gi|296133540|ref|YP_003640787.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
gi|296032118|gb|ADG82886.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
Length = 286
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
VM++G+PNVGKSS+IN L KG A G + GVTR +++ + +LDTPG
Sbjct: 127 VMILGIPNVGKSSLINKLAG----KG-ATRTGDRPGVTRG-KQWIRVGRD--MELLDTPG 178
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ D+ E G +LA +++ ++ + +L YL + + LD S+
Sbjct: 179 ILWPKFDDPEVGFKLAVTGAIKEEVINVEQVVLKLLKYLKDMHPEKLKARYKLDSLSEKP 238
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V +LA +R + V D + AR+ + FR G G LD
Sbjct: 239 VEILADIGA-----RRGLLIPGGQV----DMEKAARVILAEFRTGKLGRFTLD 282
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K + ++LK VDIVIE+ D+R+P + RN LQ+ +Q +P V+ LNK DL + +
Sbjct: 14 MVKAKKMVRENLKIVDIVIELVDARIPSSSRNPDLQEILQG-KPRVVALNKADLAD---Q 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKIL--------PTLQHISDNMTRYHRTEV 112
+L E + + N + +GV+K++ P +Q ++ R R
Sbjct: 70 NLTERWTQVFTRDGCNAVAIN--STTGQGVEKLVALTKKAGEPVMQKLAAK-GRKPRP-- 124
Query: 113 YNTTVMVVGVPNVGKSSIINAL 134
VM++G+PNVGKSS+IN L
Sbjct: 125 --IRVMILGIPNVGKSSLINKL 144
>gi|444378516|ref|ZP_21177713.1| 50S ribosomal subunit maturation GTPase RbgA [Enterovibrio sp.
AK16]
gi|443677379|gb|ELT84063.1| 50S ribosomal subunit maturation GTPase RbgA [Enterovibrio sp.
AK16]
Length = 314
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+PF+ N ++++ ++ +P++ VLNKRDL + +
Sbjct: 13 MHKARKEIEEVVPKIDVIIEVLDARIPFSSENPMIRR-IRKDKPVIKVLNKRDLADPEMT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+L E + KEQ + I T V KI+ ++ HR E+ N M+
Sbjct: 72 ALWLEHLEKEQGVKAMAITTE----QISEVNKIMDLCHKLAP-----HREEMGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 131 INALRSSHMKKGKAVPILP-TLQHISD--------NMTRYHRTEV-YNTTVMVVGVPNVG 180
+ AL H++K + V + T + IS+ + HR E+ N M++G+PNVG
Sbjct: 70 MTALWLEHLEKEQGVKAMAITTEQISEVNKIMDLCHKLAPHREEMGKNIRTMIMGIPNVG 129
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VTR Q +I+ + + + DTPGI P+++N
Sbjct: 130 KSTIINTLAGRVVAK-----TGNQPAVTRQ---QQRINLQNGVVLSDTPGILWPKVENPH 181
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA ++D + +A Y + YL +N++E + V L+ K
Sbjct: 182 SGFRLAATGAVKDTAMEYDEVAFYTVEYLASAYPELLKKRYNIEELPETEVELMEAIGEK 241
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + D + + I I R G+ G + L+
Sbjct: 242 RGCLRAGGRI---------DLHKASEILINDLRNGALGLITLE 275
>gi|397170366|ref|ZP_10493782.1| GTPase YlqF [Alishewanella aestuarii B11]
gi|396088033|gb|EJI85627.1| GTPase YlqF [Alishewanella aestuarii B11]
Length = 311
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 137 SHMKKGKAVPI-------LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+ K +A+PI + L + ++M EV M++G+PNVGKS++IN L
Sbjct: 76 AEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLEVRAARAMIMGIPNVGKSTLINTLA 135
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
+ K G +AGVT++ Q +I + + + DTPG P++ CG RLA
Sbjct: 136 GRTIAK-----TGNEAGVTKA---QQRIKLENNVILTDTPGFLWPKLSPTTCGYRLAVTG 187
Query: 250 TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD 309
++D + +IA + YL + + F L E ++ + LL +++ ++
Sbjct: 188 AIKDTVFDYADIALFAADYLLQAYPSAVMTRFGLTEQPENDLALLDAIGMRRGAMRKGGV 247
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V D + I I R G+ G + L+
Sbjct: 248 V---------DLEKAGAILITELRAGNLGPITLE 272
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VDI+IE+ D+R+PF+ N L+ Q ++ P + VLNK DL +
Sbjct: 10 MHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQ-LRKDTPCIKVLNKADLADPALT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + EQ ++ + + + K L + ++M EV M++
Sbjct: 69 ARWVDYF-AEQKNVRAIPISQQQPEQIKA-------LLELCNSMLPERNLEVRAARAMIM 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS++IN L + K
Sbjct: 121 GIPNVGKSTLINTLAGRTIAK 141
>gi|15675137|ref|NP_269311.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SF370]
gi|71910695|ref|YP_282245.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS5005]
gi|410680553|ref|YP_006932955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
gi|13622297|gb|AAK34032.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853477|gb|AAZ51500.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
gi|395453930|dbj|BAM30269.1| ribosomal biogenesis GTPase [Streptococcus pyogenes M1 476]
gi|409693142|gb|AFV38002.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
Length = 282
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 142/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
RT+ +
Sbjct: 67 -----------------------------------------------TRTKEWKAYYESQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIQRLRERGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|71029910|ref|XP_764597.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351553|gb|EAN32314.1| hypothetical protein TP02_0028 [Theileria parva]
Length = 291
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%)
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
LP++D++E ++LAA L D + GE IADYIL+ LN++ Y YV NL P+++I
Sbjct: 2 LPKMDDVEINLKLAALGCLNDSVAGEDYIADYILYRLNKSNLYTYVKTLNLSSPTNNINK 61
Query: 293 LLAKAA--IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ I+KKW NSV D +IFI FR G FG + LD
Sbjct: 62 ISQHIGEMIEKKW---------NSV----DPVNCYKIFINQFRMGFFGKICLD 101
>gi|160939136|ref|ZP_02086487.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
gi|158438099|gb|EDP15859.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
Length = 288
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 80/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P + RN + MVL LNK DL + +
Sbjct: 10 MTKAKRAMKEDMKLIDLVIELVDARVPLSSRNPDIDDLGAGKARMVL-LNKSDLADERQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + H+ +V + RN KG TL+ +
Sbjct: 69 ARWAAWFEDKGIHVVKV---DARN---KG------TLKQVQ------------------- 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
S+I + + + R R + N + MVVG+PN
Sbjct: 98 --------SVIQ-------------------EACKEKIERDRRRGILNRPIRTMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ IN+ GKA G K GVT+ I + +LDTPGI PR +
Sbjct: 131 VGKSTFINSF------AGKACAKTGNKPGVTKGNQW---IRLNKTLELLDTPGILWPRFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ + G++LA ++ D ++ + +A ++ +L + + F L+ + ++L +
Sbjct: 182 DQQVGLKLALIGSINDQILNKDELACELIRFLKKRYPQVLAERFGLETEGKEAAVILEEI 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A + + D+ D A + ++ FR G G + L+
Sbjct: 242 ARVRACLLKGGDL---------DVSRAAGLLLDDFRAGKLGRITLE 278
>gi|308050071|ref|YP_003913637.1| Ras superfamily GTP-binding protein YlqF [Ferrimonas balearica DSM
9799]
gi|307632261|gb|ADN76563.1| Ras superfamily GTP-binding protein YlqF [Ferrimonas balearica DSM
9799]
Length = 310
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 145/346 (41%), Gaps = 86/346 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I++ + +D++IEV D+R+P++ N ++ + ++ +P++ +LNK DL + +
Sbjct: 10 MNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVAK-LRRDKPVIKILNKADLADPEMT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E +GV+ TL D ++ H+
Sbjct: 69 QAWMAYLEQE-----------------RGVK----TLALADDKVSHVHKI---------- 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + L S + GK + M++G+PNVG
Sbjct: 98 -------TELCQKLVPSKVGPGKQI------------------------KAMIMGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT++ ++K+ + ++Y DTPG+ P+++N
Sbjct: 127 KSTLINTLAGRVVAK-----TGNEPAVTKA-QQRIKLDDGIMLY--DTPGMLWPKLENEH 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDE-PSDDIVMLLAKA 297
G RLAA ++D +V ++ Y+ YL G Y + + LDE P D +
Sbjct: 179 YGYRLAATGAIRDTVVVYEDVGSYVSEYL--LGAYPELLKSRYKLDELPQTDWEFMEMAG 236
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ R S N V D + I I R G+ G + L+
Sbjct: 237 KL------RGCVRSGNQV----DFTKFGTILINELRSGTLGRITLE 272
>gi|291527942|emb|CBK93528.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
M104/1]
Length = 281
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 22/197 (11%)
Query: 151 LQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGV 207
++ + + R + + N V MVVG+PNVGKS+ IN+ GKA G K GV
Sbjct: 101 MEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSY------AGKACAKTGNKPGV 154
Query: 208 TRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
T+ +++++ + +LDTPGI P+ ++ G+RLA +++D ++ +A ++
Sbjct: 155 TKG-KQWIRLNKS--VELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVK 211
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
+L + + E +DI+ L++ A+ +K + + PD + A +
Sbjct: 212 FLKAEYPGLLAQRYEVSE-ENDIIELISAVAVNRKCLSKGGE---------PDYSKAAAL 261
Query: 328 FIEHFRKGSFGSVMLDR 344
I+ FR G G + L+R
Sbjct: 262 IIDDFRSGKLGHITLER 278
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P + RN + + +N ++L +NK DL +
Sbjct: 10 MTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLIL-MNKADLAD---- 64
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNT 115
+E+ R+ + E V+ + R+ + G++ I ++ + + R + + N
Sbjct: 65 ---KERTREWSAFFKEKGFFVVSLDARSKS--GMKSITDIVMEACKEKIERDRKRGIKNR 119
Query: 116 TV--MVVGVPNVGKSSIINA 133
V MVVG+PNVGKS+ IN+
Sbjct: 120 PVRAMVVGIPNVGKSTFINS 139
>gi|19704538|ref|NP_604100.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714822|gb|AAL95399.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 289
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESKTVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPLEDVACSLLRKMLEQGRWESLKERYKLLEEDRDDKVLENILSKIALR 253
>gi|291524516|emb|CBK90103.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
DSM 17629]
Length = 281
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 22/197 (11%)
Query: 151 LQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGV 207
++ + + R + + N V MVVG+PNVGKS+ IN+ GKA G K GV
Sbjct: 101 MEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSY------AGKACAKTGNKPGV 154
Query: 208 TRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
T+ +++++ + +LDTPGI P+ ++ G+RLA +++D ++ +A ++
Sbjct: 155 TKG-KQWIRLNKS--VELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVK 211
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
+L + + E +DI+ L++ A+ +K + + PD + A +
Sbjct: 212 FLKAEYPGLLAQRYEVSE-ENDIIELISAVAVNRKCLSKGGE---------PDYSKAAAL 261
Query: 328 FIEHFRKGSFGSVMLDR 344
I+ FR G G + L+R
Sbjct: 262 IIDDFRSGKLGHITLER 278
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P + RN + + +N ++L +NK DL +
Sbjct: 10 MTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLIL-MNKADLAD---- 64
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNT 115
+E+ R+ + E V+ + R+ + G++ I ++ + + R + + N
Sbjct: 65 ---KERTREWSAFFKEKGFFVVSLDARSKS--GMKNITDIVMEACKEKIERDRKRGIKNR 119
Query: 116 TV--MVVGVPNVGKSSIINA 133
V MVVG+PNVGKS+ IN+
Sbjct: 120 PVRAMVVGIPNVGKSTFINS 139
>gi|119775128|ref|YP_927868.1| ribosomal biogenesis GTPase [Shewanella amazonensis SB2B]
gi|119767628|gb|ABM00199.1| GTP-binding protein [Shewanella amazonensis SB2B]
Length = 314
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 137/343 (39%), Gaps = 79/343 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD+VIEV D+R+P++ N PMV
Sbjct: 10 MHKAQKEIAEAMPQVDLVIEVLDARIPYSSEN-----------PMVA------------- 45
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
K+R ++ I + C ++ + +
Sbjct: 46 -----KLRGDKPCIK--LLNKC----------------------------DLADPAITEA 70
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ ++ K + A+ + ++ G ++P L + + R + + M++G+PNVG
Sbjct: 71 WIAHLEKEQGVKAMAVTTLQPGHLKTVIPEL--VRKLVPERDRAD-KDIRTMIMGIPNVG 127
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN L + K G + VT+ +Q +I+ K I + DTPGI P++DN
Sbjct: 128 KSTIINTLAGRVIAK-----TGNEPAVTK---AQQRINLKNGIVLSDTPGILWPKVDNEA 179
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
RLA ++D + ++A + + + + LDE SDD V LL K
Sbjct: 180 SSYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRK 239
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + D + A + + FR G G + L+
Sbjct: 240 RGALRSGG---------YVDLHKAAELLLHEFRSGKLGLLSLE 273
>gi|424787770|ref|ZP_18214534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
gi|422113524|gb|EKU17262.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
Length = 283
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 142/346 (41%), Gaps = 85/346 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+PF+ +N +L + V + +P +LVLNK DL ++
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGD-KPKLLVLNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H++ RY +
Sbjct: 67 --------------------------------------HLTKEWRRYFENQ--------- 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K G K GVT+ Q + + ILDTPGI P+ + +
Sbjct: 134 KSTLMNRLAGE-----KIAVTGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEEAD 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAKA 297
++LA ++D L+ +A + + Y + F NL + + +I+M +
Sbjct: 186 IALKLALTGAIKDDLLPMDEVAIFGINYFKEHYPTELQERFKAMNLKDEAPEIIMDMT-- 243
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + ++FI+ R G G LD
Sbjct: 244 --QKLGFRDNYD------RFY-------QLFIKEIRDGKVGRYTLD 274
>gi|408401652|ref|YP_006859615.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407967880|dbj|BAM61118.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 295
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 143/349 (40%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL +
Sbjct: 24 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLAD---- 78
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
PT RT+ +
Sbjct: 79 ----------------------------------PT------------RTKEWKAYYESQ 92
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 93 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIKRLRDRGIQKETLRTMIIGIPN 144
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 145 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 196
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R F L+E + +I+M L
Sbjct: 197 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFREYYPNRLTKRFKNIPLEEEAPEIIMTLT 256
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 257 RQL----GFKDDYD------RFY-------TLFVKEVRDGKLGQYTLDQ 288
>gi|90577937|ref|ZP_01233748.1| putative GTPase [Photobacterium angustum S14]
gi|90441023|gb|EAS66203.1| putative GTPase [Photobacterium angustum S14]
Length = 317
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ--QSVQNIRPMVLVLNKRDLINSK 58
M + K+IE+ + VD++IEV D+R+PF+ N L++ ++ + +P+V VLNKRDL + +
Sbjct: 12 MHKARKEIEEAMPKVDVIIEVLDARIPFSSENPLIKSFRNTNDGKPVVKVLNKRDLADPE 71
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTV 117
L + + KEQ + + T N V +I+ + ++ HR E
Sbjct: 72 MTQLWIDHLEKEQGVKAIAVTTE----NLNEVNQIMELCRKLAP-----HREEAGKKIRT 122
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IINAL
Sbjct: 123 MIMGIPNVGKSTIINAL 139
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E M++G+PNVGKS+IINAL G+ V + G + VTR Q +I+
Sbjct: 112 HREEAGKKIRTMIMGIPNVGKSTIINAL------AGRTVAITGNQPAVTRQ---QQRINL 162
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + DTPGI P+++N G RLAA ++D + I++A + + YL + Y D
Sbjct: 163 DNGVLLSDTPGILWPKVENPHSGFRLAATGAIKDTAMDYIDVAFFTIEYLIKA----YPD 218
Query: 280 F----FNLD-EPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRK 334
+NLD E + + L+ + K+ K V D + + I I R
Sbjct: 219 MIKARYNLDNELPESEIELMEEIGRKRGCLKGGGRV---------DLHKASVILINELRN 269
Query: 335 GSFGSVMLD 343
G+ G + L+
Sbjct: 270 GTLGHITLE 278
>gi|59713694|ref|YP_206469.1| ribosomal biogenesis GTPase [Vibrio fischeri ES114]
gi|59481942|gb|AAW87581.1| GTP-binding protein [Vibrio fischeri ES114]
Length = 314
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + +D++IEV D+R+PF+ N L+ S++ +P V VLNKRDL + +
Sbjct: 13 MHKARKEIEEVVPKIDVIIEVLDARIPFSSENPLI-SSIRKDKPCVKVLNKRDLSDPEVT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L E + KEQ + + T N + + KI+ + + + N M++
Sbjct: 72 QLWIEHLEKEQGVTAMAVTTE----NPEEIHKIM----EVCRKLVPHREAMGKNVRTMIM 123
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN L
Sbjct: 124 GIPNVGKSTIINTL 137
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+ + + +
Sbjct: 117 NVRTMIMGIPNVGKSTIINTL------AGRTIAVTGNQPAVTRR---QQRINLQNGVVLS 167
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE- 285
DTPGI P+++N G RLAA ++D + +A Y + YL + R + + LDE
Sbjct: 168 DTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPERLKERYKLDEL 227
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
P +D+ ++ A R + + ++ + + I + R G G V L+
Sbjct: 228 PDNDLELMEAIGR------SRGCLQAGGRINLY----KASEILLHELRSGVLGQVTLE 275
>gi|375111626|ref|ZP_09757830.1| GTPase YlqF [Alishewanella jeotgali KCTC 22429]
gi|374568262|gb|EHR39441.1| GTPase YlqF [Alishewanella jeotgali KCTC 22429]
Length = 311
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 137 SHMKKGKAVPI-------LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+ K +A+PI + L + ++M EV M++G+PNVGKS++IN L
Sbjct: 76 AEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLEVRAARAMIMGIPNVGKSTLINTLA 135
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
+ K G +AGVT++ Q +I + + + DTPG P++ CG RLA
Sbjct: 136 GRTIAK-----TGNEAGVTKA---QQRIKLENNVILTDTPGFLWPKLSPTTCGYRLAVTG 187
Query: 250 TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD 309
++D + +IA + YL + + F L E ++ + LL +++ ++
Sbjct: 188 AIKDTVFDYADIALFAADYLLQAYPAAVMARFGLTEQPENDLALLDAIGMRRGAMRKGGV 247
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V D + I I R G+ G + L+
Sbjct: 248 V---------DLEKAGAILITELRAGNLGPITLE 272
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VDI+IE+ D+R+PF+ N L+ Q ++ P + VLNK DL +
Sbjct: 10 MHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQ-LRKDTPCIKVLNKADLADPALT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + EQ ++ + + + K L + ++M EV M++
Sbjct: 69 ARWVDYF-AEQKNVRAIPISQQQPEQIKA-------LLELCNSMLPERNLEVRAARAMIM 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS++IN L + K
Sbjct: 121 GIPNVGKSTLINTLAGRTIAK 141
>gi|256847170|ref|ZP_05552616.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
gi|256715834|gb|EEU30809.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
Length = 290
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 138/349 (39%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I + + VDIV E+ D+R+P++ +N + ++ + +P +L+L K DL + +
Sbjct: 11 MAKALRQIREQMSLVDIVFELVDARIPYSSQNPEVARAAGD-KPRLLILTKTDLADPQ-- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E + H V+ + R N V
Sbjct: 68 -VTQEWLNFFAHHDQPVLALDSRGRNVAKV------------------------------ 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V +S +++ L + K K I M VGVPNVG
Sbjct: 97 -VTQKAQSILVDKLAAEQAKGMKKRAI----------------------RAMCVGVPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ K G + GVT Q + + +LDTPG+ P+
Sbjct: 134 KSTLLN-----HLVKKNVAATGNRPGVT---TGQQWLRSSAQLELLDTPGVLWPKFATER 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIVMLL 294
G LA ++D L + ++A + L YL + YR + ++DE D +LL
Sbjct: 186 QGTLLALTGAIKDSLFAKDDVALFALHYLRKHRLAELMSRYR-LSKADVDETVSDPDLLL 244
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D +S R+ E RKG G + L+
Sbjct: 245 --TITQKMGFRDDYDRASE------------RLIFE-LRKGKLGKISLE 278
>gi|389815303|ref|ZP_10206649.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
gi|388466082|gb|EIM08391.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
Length = 289
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PNVGKS++IN L + K +P GVT++ +K+ ++ I +LDTPG
Sbjct: 123 AMIVGIPNVGKSTLINRLSKKSLAKTGNMP-----GVTKA-QQWIKVGKE--IELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ +A Y L +L R ++ + +D ++I
Sbjct: 175 ILWPKFEDPETGLKLAVTGAIKDSVIQMQELAIYSLKFLEERYPERMMERYGIDHVDEEI 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV-----ARIFIEHFRKGSFGSVMLD 343
V FD R F GE+ A + + R G V D
Sbjct: 235 V--------------NTFDHIGKKRRCFDQHGEIDYETTAEVIVRDIRNQHLGKVTFD 278
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VDI+ E+ D+R+P + RN ++ Q +Q +P +++LNK D+ + E
Sbjct: 10 MAKARRQVTEKLKLVDIIFELVDARLPLSSRNPMIDQVIQQ-KPRLIILNKMDMAD---E 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
++ +R + S + N + +G+Q + + I D R + +
Sbjct: 66 VETKKWIRYFEDQGSRAVAIN--SLEGRGLQLVTKASKEILEDKWDRMIAKGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
M+VG+PNVGKS++IN L + K +P + Q
Sbjct: 124 MIVGIPNVGKSTLINRLSKKSLAKTGNMPGVTKAQQ 159
>gi|449544554|gb|EMD35527.1| hypothetical protein CERSUDRAFT_116270 [Ceriporiopsis subvermispora
B]
Length = 423
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 52/275 (18%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+ K L D+V+E+ D+R+P T IN E +E +
Sbjct: 28 LPKLLTRTDVVLELRDARLPLTS------------------------INRNFEGALE-RW 62
Query: 68 RKEQSHIS-EVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
RKE+ H + N P +G ++ R V+N +V P G
Sbjct: 63 RKERGHFAPRKSVQNAAAPPSEGPTGLI------------CERIVVFNKRDLV---PEWG 107
Query: 127 KSSIINALRSSH--MKKGKAVPILP-TLQHISDNMTRYHRTEVY--NTTVMVVGVPNVGK 181
A+ + + K A P ++ ++D + R + V+VVG+PNVGK
Sbjct: 108 IEPFSRAMAAKYPDQKVFFASWNKPRDIRALNDMLIDIARRNPHLPELNVLVVGMPNVGK 167
Query: 182 SSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID-- 237
S+++NALR++ + KA+ + G+TR++ +++K+S P +Y D+PG+ +P +
Sbjct: 168 STLLNALRANGIPGPTAKALRTSAQPGLTRALSTRLKLSLDPPVYSFDSPGVMMPFLGKG 227
Query: 238 --NLECGMRLAACATLQDHLVGEINIADYILFYLN 270
E G++LA A +++ L ++A Y+++ LN
Sbjct: 228 DRGAERGVKLALIAGIKEGLYDTESLAAYLIYRLN 262
>gi|163814004|ref|ZP_02205397.1| hypothetical protein COPEUT_00156 [Coprococcus eutactus ATCC 27759]
gi|158450698|gb|EDP27693.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus eutactus
ATCC 27759]
Length = 279
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 18/173 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PNVGKS+ IN S+ +K VG K GVT+ +++ + I +LDTPG
Sbjct: 123 AMIVGIPNVGKSTFIN----SYARKA-CTKVGNKPGVTKG-KQWIRLGKN--IELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ D+ G+RLA ++ D ++ +IA ++ +L +N+ E + D
Sbjct: 175 ILWPKFDDEAVGLRLAYIGSINDEILNVTDIAVELIKFLQANYCQTLTQRYNI-ESTGDP 233
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V ++A+ A K++ K+ ++ D + + + ++ FR G G + L+
Sbjct: 234 VQVIAQIAEKRQCIKKGGEL---------DYDKASALLMDDFRSGKLGRITLE 277
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +DIVIE+ D+R+P + +N + + +N ++L LNK DL +
Sbjct: 10 MTKAKRMMQEDIKLIDIVIELVDARIPLSSKNPDIDELAKNKYRLIL-LNKSDLADDAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS-DNMTRYHRTEVYNTTV-- 117
+ E+ ++ ++++ N R+ G++ I +Q + + R + + N +
Sbjct: 69 AKWEKYYSEKGFFVAKI---NARDG--AGMKSINGIVQEACREKIERDRKRGIINRPIRA 123
Query: 118 MVVGVPNVGKSSIINA 133
M+VG+PNVGKS+ IN+
Sbjct: 124 MIVGIPNVGKSTFINS 139
>gi|323307739|gb|EGA61002.1| Mtg1p [Saccharomyces cerevisiae FostersO]
Length = 339
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 84/147 (57%), Gaps = 16/147 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKG-------KAVPVGPKAGVTRSVMSQVKISEKPL- 222
++ G+PNVGKS++IN+LR+ +G K G +AGVTR+ ++++ +
Sbjct: 125 ALITGMPNVGKSTLINSLRTIFHNQGNMGRKFKKVAKTGAEAGVTRATSEVIRVTSRNTE 184
Query: 223 ----IYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYR 276
IY++DTPGI +P R+ + + LA C +++++LV I ADY+L+ +N + N
Sbjct: 185 SRNEIYLIDTPGIGVPGRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDG 244
Query: 277 YVDFF--NLDEPSDDIVMLLAKAAIKK 301
+ + + + P++DI +L + + K
Sbjct: 245 RTELYPGSTNSPTNDIYDVLRRLQVNK 271
>gi|424761234|ref|ZP_18188816.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
gi|402402218|gb|EJV34939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
Length = 314
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 93/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN ++ Q VQ +P +++LNK DL ++
Sbjct: 41 MAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQ-KPRLVLLNKGDLADNDQN 99
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
+ +K+ + + N + KG+ KI+P + + + + R + +
Sbjct: 100 KKWQHYFQKKG---YQTLVINAQ--QNKGINKIVPAAKEALKEKLAREQAKGLKPRAIRA 154
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M +G+PNVGKS+++N L V P
Sbjct: 155 MCIGIPNVGKSTLMNRL-------------------------------VGKKIAQTGNKP 183
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
V K LRS SQ+++ + P GI P+ +
Sbjct: 184 GVTKGQ--QWLRSG---------------------SQLELLDTP--------GILWPKFE 212
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-----PSDDIVM 292
+ E G +LA ++D L+ ++A Y L + R R + + L E P+ + +M
Sbjct: 213 DEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQLM 272
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L+++ KR F D + + I R G G+ LDR
Sbjct: 273 LISQ--------KRGFR---------DDYNRASEMIILEIRSGKLGTYTLDR 307
>gi|423401320|ref|ZP_17378493.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|423457979|ref|ZP_17434776.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|423477976|ref|ZP_17454691.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
gi|401148363|gb|EJQ55856.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|401654310|gb|EJS71853.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|402428138|gb|EJV60235.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
Length = 296
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R D +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKDRYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ ++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGQMA--ISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|381395208|ref|ZP_09920913.1| ribosome biogenesis GTPase A [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329109|dbj|GAB56046.1| ribosome biogenesis GTPase A [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 332
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 142/345 (41%), Gaps = 84/345 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L ++++ L VD++IEV D+R+P++ N + + ++ +P + + NK DL +
Sbjct: 10 MHKALTEMKEALPKVDVLIEVLDARIPYSSENPEIAK-IRGDKPCIKIFNKSDLAD---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P+ + H+ D+
Sbjct: 65 ------------------------PDSTAAWQ-----AHLEDDRA---------VKTFTT 86
Query: 121 GVPNVGKS-SIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ N+ K+ I+ +R + +K +V + M++G+PNV
Sbjct: 87 SIDNIAKTKQILELIRKTCAQKDASVKTI---------------------NAMIIGIPNV 125
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L + K G + VT+S Q +I+ I +LDTPG+ P+++N
Sbjct: 126 GKSTLINILAERVIAK-----TGNEPAVTKS---QQRINLGNGIVLLDTPGVLWPKLENP 177
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAA 298
G RLA ++D + +I Y YL + + + +D+ P+ ++ L AA
Sbjct: 178 NTGYRLAISGAVKDTALEYDDIGFYAADYLLKAYPQLLKERYKIDDLPATELEFLELAAA 237
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR ++ V + ++ + I +R G G + L+
Sbjct: 238 ------KRGALMAGGRVNLH----KICELLIGEYRSGKLGRITLE 272
>gi|89076512|ref|ZP_01162826.1| putative GTPase [Photobacterium sp. SKA34]
gi|89047830|gb|EAR53426.1| putative GTPase [Photobacterium sp. SKA34]
Length = 317
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ--QSVQNIRPMVLVLNKRDLINSK 58
M + K+IE+ + VD++IEV D+R+PF+ N L++ ++ + +P+V VLNKRDL + +
Sbjct: 12 MHKARKEIEEAMPKVDVIIEVLDARIPFSSENPLIKSFRNTNDGKPVVKVLNKRDLADPE 71
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTV 117
L + + KEQ + + T N V +I+ + ++ HR E
Sbjct: 72 MTQLWIDHLEKEQGVKAIAVTTE----NLNEVNQIMDLCRKLAP-----HREEAGKKIRT 122
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IINAL
Sbjct: 123 MIMGIPNVGKSTIINAL 139
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 31/190 (16%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E M++G+PNVGKS+IINAL G+ V + G + VTR Q +I+
Sbjct: 112 HREEAGKKIRTMIMGIPNVGKSTIINAL------AGRTVAITGNQPAVTRQ---QQRINL 162
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + DTPGI P+++N G RLAA ++D + I++ + + YL + Y D
Sbjct: 163 DNGVLLSDTPGILWPKVENPHSGFRLAATGAIKDTAMDYIDVGFFTIEYLIKA----YPD 218
Query: 280 F----FNLDE--PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFR 333
+NLD+ P +I L+ + K+ K V D + + I I R
Sbjct: 219 MIKARYNLDDDLPESEI-ELMEEIGRKRGCLKGGGHV---------DLHKASVILINELR 268
Query: 334 KGSFGSVMLD 343
G+ G++ L+
Sbjct: 269 NGTLGNITLE 278
>gi|229098307|ref|ZP_04229254.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|229117324|ref|ZP_04246702.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|407706297|ref|YP_006829882.1| chitin-binding protein [Bacillus thuringiensis MC28]
gi|423378323|ref|ZP_17355607.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|423441431|ref|ZP_17418337.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|423448343|ref|ZP_17425222.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|423464505|ref|ZP_17441273.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|423533847|ref|ZP_17510265.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|423540884|ref|ZP_17517275.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|423547122|ref|ZP_17523480.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|423623086|ref|ZP_17598864.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|228666224|gb|EEL21688.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|228685205|gb|EEL39136.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|401128937|gb|EJQ36620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|401172072|gb|EJQ79293.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|401178843|gb|EJQ86016.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|401259859|gb|EJR66033.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|401636589|gb|EJS54343.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|402418092|gb|EJV50392.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|402420772|gb|EJV53043.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|402464066|gb|EJV95766.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|407383982|gb|AFU14483.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
MC28]
Length = 296
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NLDE +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLDEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L +E + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKEWIAYFKEKGHMA--ISINAQ--AGQGMKEITAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|71004538|ref|XP_756935.1| hypothetical protein UM00788.1 [Ustilago maydis 521]
gi|46095584|gb|EAK80817.1| hypothetical protein UM00788.1 [Ustilago maydis 521]
Length = 622
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 61/309 (19%)
Query: 17 IVIEVHDSRMPFTGRNHLLQQ-------------------SVQNIRPMVLVLNKRDLINS 57
+VIE D+R+P T N + ++ S R +++ L KRDLI+
Sbjct: 136 LVIEARDARLPLTSINPVFERLLRKAPTANDHLNTPSPLTSTWRSRRLIVYL-KRDLISP 194
Query: 58 KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKIL------PTLQHISDNMTR----- 106
E+ I +++ + H S ++F + R+ + ++K+L L H D++ R
Sbjct: 195 TAEAAILSSMKQVEPHQS-ILFIDTRSDS--DIKKVLSWVHRQARLVHADDSVHRPPVSE 251
Query: 107 ---------------YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
Y T ++++G+PNVGKSS++NALR + KGKA P
Sbjct: 252 KAERRARKGLSGAFRYTPTPEEGVRLLILGMPNVGKSSLLNALRRVGVGKGKAASTAPHP 311
Query: 152 QHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR------SSHMKKGKAVPVGPKA 205
H ++ + V P + S + L+ S ++ G V P +
Sbjct: 312 GHTRKLTGTVRISKAGPSKVEAEDAPVRARGSRRD-LKDDRESISQELQTGGFVISNPDS 370
Query: 206 GVTRSVMSQVKISEKPLIYILDTPGISLPRI----DNLECGMRLAACATLQDHLVGEINI 261
+ K ++ P IY+ DTPG+ +P + D E G++LA A ++D L +
Sbjct: 371 TPQHTEGKADKPTDPP-IYVYDTPGVMVPFLGHGADGSERGLKLAITAGIKDSLFDIQLL 429
Query: 262 ADYILFYLN 270
ADY+L+ LN
Sbjct: 430 ADYLLYRLN 438
>gi|373496782|ref|ZP_09587327.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
12_1B]
gi|404368391|ref|ZP_10973743.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
ulcerans ATCC 49185]
gi|313687691|gb|EFS24526.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
ulcerans ATCC 49185]
gi|371964761|gb|EHO82267.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
12_1B]
Length = 287
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 68/304 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I+++++ +DIV+EV D+R+P + +N + +N + V+VLNK DL+ K E L +K
Sbjct: 20 IKENMQLIDIVLEVVDARIPLSSKNPDISVFAKN-KKRVIVLNKSDLV-EKSEILYWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KE + EV+ + N K + I+ + + NT +MVVG+PNVG
Sbjct: 78 FKENNLADEVLEISAETGFNIKALYSIIDKVSAEKKEKMKAKGLRKVNTRLMVVGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGKSS
Sbjct: 138 KSRLINRI--------------------------------------------VGKSS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G T+ V+I E + +LDTPGI P+ ++ E G LA
Sbjct: 151 ------------AGVGNKPGFTKG-KQWVRIKEG--LELLDTPGILWPKFESDEVGQNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIV-MLLAKAAIKKKW 303
++D ++ +I+ ++ + + G + + + LDE +I+ +L K A++ K
Sbjct: 196 ITGAIRDEILPIEDISCILISKMIKYGLWNILKERYKLLDEDKSEIMGEILEKIALRNKM 255
Query: 304 FKRA 307
F +
Sbjct: 256 FNKG 259
>gi|237744258|ref|ZP_04574739.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|421527044|ref|ZP_15973649.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
gi|229431487|gb|EEO41699.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|402256773|gb|EJU07250.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
Length = 289
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVACSLLRKMLEQGRWESLKERYKLLEEDRDDKVLENILSKIALR 253
>gi|229104400|ref|ZP_04235069.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
gi|228679098|gb|EEL33306.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
Length = 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NLDE +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLDEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L +E + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKEWIAYFKEKGHMA--ISINAQ--AGQGMKEITAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|333905011|ref|YP_004478882.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|333120276|gb|AEF25210.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|456370989|gb|EMF49885.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02109]
gi|457095374|gb|EMG25869.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02083]
Length = 284
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK D
Sbjct: 11 MSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKAD------- 62
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L ++ + KE E +G+
Sbjct: 63 -LADKSMTKEWRQFYE----------KQGI------------------------------ 81
Query: 121 GVPNVGKSSIINALRSSHMKK-GKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVP 177
K+ IN+ S +KK +A L ++D + R + T+ M++G+P
Sbjct: 82 ------KTLAINSKEQSTVKKVTEAAKDL-----MADKIQRLRDRGIQKETLRTMIIGIP 130
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
N GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ +
Sbjct: 131 NAGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFE 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLL 294
+ + G++LA ++D L+ + + L Y R +D F NL++ + +++M
Sbjct: 183 DQKVGLKLALTGAIKDQLLPMDEVTIFGLNYFKEHYPNRLLDRFKGINLEDEAPEMIM-- 240
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ +K +K +D N +F++ R G G LD+
Sbjct: 241 --SMTRKLGYKDDYDRFYN-------------LFVKEVRDGRLGVFTLDQ 275
>gi|375088583|ref|ZP_09734921.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
gi|374561548|gb|EHR32887.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
Length = 290
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 142/349 (40%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ ++ LK VD+V E+ D+R+P + N L + + + +P V +L K DL +++
Sbjct: 10 MAKATREFQEKLKLVDVVFELLDARIPLSSSNPSLDEIIGD-KPRVKILMKSDLADAQIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
S + ++++I+ V + RN Q + P L D +T Y
Sbjct: 69 S--QWLTYYKENNIAVVPYNAKRN------QDVSPILAAADDVLTEYK------------ 108
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ I LR ++ + VG+PNVG
Sbjct: 109 ------QKRIDKGLRPRAIR------------------------------AVSVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN ++ + G + GVT++ Q I K + +LDTPGI P+ ++
Sbjct: 133 KSTLINRFAGKNIAQ-----TGNRPGVTKA---QQWIKYKNKLELLDTPGILWPKFEDQR 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE------PSDDIVMLL 294
G LA ++D L+ ++A +++ Y R +N D+ P +++ML+
Sbjct: 185 VGKCLAVTGAIKDTLLHLDDVALFMMAYFTEHYPGRLAKRYNFDKKLETEMPLPELLMLI 244
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K KR + D A + I RKG G L+
Sbjct: 245 TK--------KRGYR---------DDYERGAEMMIYEVRKGLLGPFSLE 276
>gi|410730593|ref|XP_003980117.1| hypothetical protein NDAI_0G04560 [Naumovozyma dairenensis CBS 421]
gi|401780294|emb|CCK73441.1| hypothetical protein NDAI_0G04560 [Naumovozyma dairenensis CBS 421]
Length = 455
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 132/283 (46%), Gaps = 60/283 (21%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR-----PMVLVLNKRDLINS 57
+ LK+ +K L ++++IE+ D R P + RN L + + +++ K+DL++S
Sbjct: 80 KALKNFQKLLPQLNMIIELRDIRAPLSTRNLLFDTLLSRTKKSSTLSKLIIYTKKDLLSS 139
Query: 58 KHESLIE--EKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
+ + +K+ K + I+E I NC N N K ++ ++ + ++ + +
Sbjct: 140 SPQDPKKYLDKLIKWHNEINEKFIIMNC-NHN-KDIKTLMDLINWQNNKFIKNPLPMGFR 197
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV 174
++++G+PNVGKS++ N+LRS +D +H E NT V
Sbjct: 198 --ILIIGMPNVGKSTLTNSLRS--------------FATHNDTDHHHHDKEKKNTVV--- 238
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL------IYILDT 228
G +AGVTRS+ ++IS IYI+D+
Sbjct: 239 ------------------------AKTGGQAGVTRSISECIRISNDKSSSTMHGIYIVDS 274
Query: 229 PGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
PG+ LP RI+N + + L+ ++D+L+ I ADY+L+ +N
Sbjct: 275 PGVGLPGRINNCQRMLTLSLAGCIKDNLIDPIIQADYLLYLIN 317
>gi|50290663|ref|XP_447764.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527075|emb|CAG60711.1| unnamed protein product [Candida glabrata]
Length = 351
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 171 VMVVGVPNVGKSSIINALR------SSHMKKGKAVPVGPKAGVTRSVMSQVKI----SEK 220
+ G+PNVGKS+++N LR SS K K G +AGVTRS +++ +
Sbjct: 149 AFIAGMPNVGKSTLVNTLRRVTNPSSSGTKFKKVARTGSEAGVTRSTSEVIRLMPTTNNS 208
Query: 221 PLIYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
IY++D+PG+ LP R+ N + L+ C ++ L+ + ADY+L+ +N +
Sbjct: 209 SPIYLIDSPGVGLPGRLTNQNRMLTLSMCGAVKTSLIEPVIQADYLLYLMNLQNPLPGAE 268
Query: 280 FF--NLDEPSDDIVMLLAKAAIKKKWF 304
++ EP++DI +L + A K+ F
Sbjct: 269 WYPKYKSEPTNDIYEVLRRLAKNKESF 295
>gi|422758930|ref|ZP_16812692.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411765|gb|EFY02673.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 282
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 89/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
R K Y++++
Sbjct: 67 ---------------------TRTKEWKA-----------------YYKSQ--------- 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +KK + ++D + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEA----AKELMADKIQRLRNRGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLA 295
G++LA +++ L+ + + L Y R F L+E + +I+M L
Sbjct: 184 ELVGLKLALTGAIKNQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ FK +D R + +F++ R G G LD+
Sbjct: 244 RQL----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|205373354|ref|ZP_03226158.1| hypothetical protein Bcoam_08560 [Bacillus coahuilensis m4-4]
Length = 285
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 21/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKS++IN L ++ K P GVT++ +K+ ++ + +LDTPG
Sbjct: 123 AMIIGIPNVGKSTLINRLAKKNIAKTGNTP-----GVTKA-QQWIKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYV--DFFNLDEPSD 288
I P+ ++ E G +LA ++D ++ +I+ Y L YL + NY V + + LDE
Sbjct: 175 ILWPKFEDQEVGYKLAVTGAIKDTIINLQDISVYALRYLEK--NYPKVLKERYGLDEIPS 232
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
D+V L +K+ + +V D + A + I R G + D
Sbjct: 233 DLVQLFDHIGMKRGSIRPGGEV---------DYDKTAELIIRDVRSVKLGRLTFD 278
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDI+ E+ D+R+P + RN ++ Q VQ +P +++LNK D+ + +
Sbjct: 10 MAKARREVTEKLKLVDIIFELVDARIPISSRNPMMDQIVQQ-KPRLVLLNKEDMADPE-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN---TTV 117
L + + Q + I N + N G+ I+ + I + + N
Sbjct: 67 -LTKAWIAYFQERGIKAISLNAQEGN--GLHAIVKAAKEILKPKWDRMKAKGMNPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
M++G+PNVGKS++IN L ++ K P + Q
Sbjct: 124 MIIGIPNVGKSTLINRLAKKNIAKTGNTPGVTKAQQ 159
>gi|28210940|ref|NP_781884.1| ribosomal biogenesis GTPase [Clostridium tetani E88]
gi|28203379|gb|AAO35821.1| GTP-binding protein [Clostridium tetani E88]
Length = 298
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 152/347 (43%), Gaps = 80/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++++++LK VD +IE+ D+R+ + N ++ N +P +++LNK DL
Sbjct: 27 MAKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGN-KPRIILLNKSDLG----- 80
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
EEKV E ++ +S NT V+
Sbjct: 81 ---EEKVTNEW-------------------------IKALSGE----------NTKVIA- 101
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
IN+L+ S MKK K I L+ ++ + + N VMVVG+PNVG
Sbjct: 102 ----------INSLKDSGMKKIKNA-IDDLLKEKTEKLKAKGLKNIVNR-VMVVGIPNVG 149
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + S + K G + GVT+ S+ I K + ++DTPGI P+ ++ +
Sbjct: 150 KSTFINRMAKSSIAK-----TGDRPGVTK---SRQWIKTKIGVELMDTPGILWPKFEDEK 201
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD---DIVMLLAKA 297
G+ LA ++D ++ +A ++ L+ + + LD+ + D + +AK
Sbjct: 202 VGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKERYKLDKLEEIPLDNMENIAK- 260
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR + + D VA + ++ FR G G + L++
Sbjct: 261 -------KRGAILGRGEI----DYNRVAIMILDEFRGGKLGRISLEK 296
>gi|325290407|ref|YP_004266588.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
gi|324965808|gb|ADY56587.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
Length = 275
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 136/337 (40%), Gaps = 84/337 (24%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
+ LK VD++IE D+R+P + RN LL R+L+ +K + L+ K
Sbjct: 19 EQLKWVDVIIETGDARLPLSSRNPLL----------------RELLGAKPKLLVLNK--- 59
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
+ +++ D ++ + V+ V
Sbjct: 60 --ADLAD------------------------EDQTGKWLKKLEQEGPVLAV--------- 84
Query: 130 IINALRSSHMKKGKAVPILPTLQHI-SDNMTRYHRTEVYNTT-VMVVGVPNVGKSSIINA 187
+A + MKK I+P L+ + ++ + + VMVVG+PN GKS+IIN
Sbjct: 85 --SASTGAGMKK-----IIPMLEELMAEKWQKLAEKGIKKPIRVMVVGIPNTGKSTIINT 137
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L + G K GVTR ++I + I +LDTPG+ P+ D+ G +LAA
Sbjct: 138 LTGRAQAR-----TGNKPGVTRGS-QWLRIHGR--IELLDTPGMLWPKFDDQIIGRKLAA 189
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRA 307
++D + +A +++ +L ++ ++ ++ I K +R
Sbjct: 190 SGAVRDEVFDLEELAQWLIAWLQTNYQGALNKYYKTEQEEINL------ETIGK---ERG 240
Query: 308 FDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+S V DT + A+IF FR LDR
Sbjct: 241 CLISGGRV----DTLKAAQIFFREFRSAKIARATLDR 273
>gi|163801603|ref|ZP_02195501.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
gi|159174520|gb|EDP59322.1| ribosomal biogenesis GTPase [Vibrio sp. AND4]
Length = 314
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + +D++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAE-LKGDKPVVKVLNKRDLADPQLT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV-YNTTVMV 119
+ + KE + + I T+ + VQKI+ ++ ++ HR E+ N M+
Sbjct: 72 QVWIDHFEKEHNVKAIAITTS----QSQEVQKIMELVRKLAP-----HREEIGKNIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IINAL
Sbjct: 123 MGIPNVGKSTIINAL 137
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR E+ N M++G+PNVGKS+IINAL G+ + V G + VTR Q +I+
Sbjct: 110 HREEIGKNIRTMIMGIPNVGKSTIINAL------AGRTIAVTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ I + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 161 QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ +DE + + ++ + ++ + V D +V+ I + R+G+ G
Sbjct: 221 RYQIDELPESDIEIIEEIGRRRGALRAGGRV---------DLHKVSEILLHELRQGTLGQ 271
Query: 340 V------MLDRDFLELDIS 352
+ M+ ++ +E++I
Sbjct: 272 ITLELPEMITQELIEVEIE 290
>gi|170755310|ref|YP_001781985.1| ribosomal biogenesis GTPase [Clostridium botulinum B1 str. Okra]
gi|429243865|ref|ZP_19207349.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
gi|169120522|gb|ACA44358.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
gi|428759071|gb|EKX81460.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
Length = 292
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 148/351 (42%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWINSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ VM
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRVM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVTR S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTR---SKQWIKTKIDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLD 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L A KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNMA-----RKRGALISKGEI----DYNRISVIILDEFRGGKLGAISLE 278
>gi|169350422|ref|ZP_02867360.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
gi|169292742|gb|EDS74875.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
spiroforme DSM 1552]
Length = 288
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 140/345 (40%), Gaps = 74/345 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I + +K +DIV+E+ D+R P + +N + Q N +P ++V+ K+DL + K
Sbjct: 12 MAKARREISEKMKLIDIVVELVDARAPLSSKNPMFDQICNN-KPRLIVMTKKDLADDKVT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTVMV 119
+L E + + H I N +N N Q+++ + I + M R +
Sbjct: 71 ALWIEYFKSKNLH---AICVNLKNFN--EYQQVINVCKEILKEKMEREAK---------- 115
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
L+S M+ M++G+PNV
Sbjct: 116 ------------RGLKSRAMR------------------------------AMILGIPNV 133
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS+ IN L K KA G + GVT+ +Q I + DTPG+ PR +++
Sbjct: 134 GKSTFINRL-----AKRKATVTGNRPGVTK---AQQIIRVDKDFELFDTPGVLWPRFEDI 185
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
+A +++ ++ + Y + YL +T + N + DI + I
Sbjct: 186 NIARNIALIGSIKQDILPLDELFIYAIEYLEKT-------YPNSVKKRYDIEIDFESDWI 238
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+K + A + VR + D V +F G+ G + ++
Sbjct: 239 EKVYDDIAKNRKIKPVRGYTDYDRVMEVFFNDIFDGNIGKITWEK 283
>gi|401430064|ref|XP_003879514.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495764|emb|CBZ31070.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 464
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 147/351 (41%), Gaps = 96/351 (27%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+K+ D ++E+ D+R+PFT N +++ +P +++ NK +L N I+E +
Sbjct: 69 VKDADFILEIRDARLPFTTENPNIRKLTAG-KPRLIIFNKAELSNEDSNRAIQEYYERNG 127
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ +FT+ R + + + + R+
Sbjct: 128 AF---ALFTSARR-----------CWKDVVEAVQRF------------------------ 149
Query: 132 NALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
++H+ +P LP T+ H+ +VVG+PNVGKS++IN+LR
Sbjct: 150 ----TTHI-----LPPLPYKTVAHVG----------------LVVGMPNVGKSTLINSLR 184
Query: 190 SSH-----------MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+H + + V + P G TR M V +S+ P + + DTPG++LP
Sbjct: 185 LAHEYQFHREDFRRSRSPETVSITP--GTTRG-MKLVPLSKDPPVVLYDTPGLTLPGCFT 241
Query: 239 LECGMRLAACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDE---PSDDIVM 292
E G++LAAC + D + + +A YI L +G+ ++ + +L DD V
Sbjct: 242 KESGLKLAACGIIPTNDVSLPQGMVARYIYDILVASGSSEHMAECLHLPRVPISFDDCVA 301
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + + S ++ D R F+ F G+ G + LD
Sbjct: 302 MICERS----------GTSGHTEMGNLDPVRAHRFFVHDFTMGNLGKITLD 342
>gi|194698884|gb|ACF83526.1| unknown [Zea mays]
Length = 379
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 122/294 (41%), Gaps = 76/294 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLIN- 56
M + I L VD+V+EV D+R P + L + + P V++LNK DL +
Sbjct: 29 MASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRRGPLEPDRRAVVLLNKADLADP 88
Query: 57 SKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPT----LQHISDNMTRYHRTEV 112
S+ E + K+Q S V + + K V K++ ++H N T
Sbjct: 89 SETEGWV--AYIKKQRRCSCVAVNSHSRESIKEVLKVVQARMREIKHGDSNCT------- 139
Query: 113 YNTTVMVVGVPNVGKSSIINAL----RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYN 168
T ++VG+PNVGKS+I+NA+ R + +KGK L+H
Sbjct: 140 --GTALLVGIPNVGKSAIVNAIHQIGRIAAAEKGK-------LKH--------------- 175
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
A+ SSH G TR + KI+ P IY+LDT
Sbjct: 176 ------------------AIVSSH------------PGETRDIRG-YKIASHPNIYVLDT 204
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
PG+ PR + G RLA ++D L+ + + A +L +N YR + N
Sbjct: 205 PGVLSPRFADDGSGPRLALTGAIKDSLLEDYDTAQLLLAIVNSGKEYRKWEKLN 258
>gi|325661110|ref|ZP_08149737.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325472617|gb|EGC75828.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKN-KARLILLNKSDLAEEKQ- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + ++
Sbjct: 68 ----------------------------------------NDAWAEYFKEKGFSVVK--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+N+ R +K + V + + + R + + N V MVVG+PN
Sbjct: 85 ----------VNSKRGGGIKSIQGV----IQEACKEKIERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ G+RLA +++D ++ +A ++ +L + +++ E S+D L +
Sbjct: 182 DQTVGLRLAFIGSIKDEILNTEELAMEMITFLTEKYPGVLEEKYSI-EISEDSYECLRRI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A R V N + DT + A + I+ FR G G + L+
Sbjct: 241 A-----ESRHCLVKGNEL----DTNKAAILLIDDFRSGKLGRITLE 277
>gi|262068273|ref|ZP_06027885.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum ATCC 33693]
gi|291378011|gb|EFE85529.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum ATCC 33693]
Length = 290
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ K E + +K
Sbjct: 18 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLL-EKKELEVWKKY 75
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 76 FKEQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 135
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 136 KSRLINRI--------------------------------------------VGKNS--- 148
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G T+ V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 149 ------------AGVGNKPGFTKG-KQWVRIKEG--IELLDTPGILWPKFESETVGVNLA 193
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A ++ + + G + + + LDE DD +M +L+K A++
Sbjct: 194 ISGAIRDEILPIEDVACSLIRKMLKQGRWTSLKDRYKLLDEDRDDEIMENILSKIALR 251
>gi|255524251|ref|ZP_05391210.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296185373|ref|ZP_06853783.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
gi|255512076|gb|EET88357.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296050207|gb|EFG89631.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
Length = 280
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 74/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD +IE+ D+R+ + +N + N +P +++LNK DL K
Sbjct: 10 MAKTRREIKENLKLVDAIIEIRDARIVRSSKNPDIDDLCGN-KPRIILLNKSDLSEDK-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E ++ V+ NC +G++ I
Sbjct: 67 -VTKEWIKTLSKDNIRVLTVNC--ITGEGLKSI--------------------------- 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+++N L ++ KA I+ +I+D VMVVG+PNVG
Sbjct: 97 -------KAVVNELLQEKHERKKAKGIV----NITDR-------------VMVVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS IN + S + K G + GVTR S+ I K I ++DTPGI P++++ E
Sbjct: 133 KSSFINKVAKSSIAK-----TGDRPGVTR---SRQWIKTKIGIELMDTPGILWPKLESEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
+ LA ++D ++ +A ++ L + ++ + L E S+ + +
Sbjct: 185 TQLNLAFTGAIKDEVMDIEELALKLVERLQDKYPQKLMERYKLKELSETPLDNMDNIG-- 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
KR ++ + D VA + ++ FR G G + L+
Sbjct: 243 ---RKRGAVIARGEI----DYNRVAVLLLDEFRGGKIGRISLE 278
>gi|421876612|ref|ZP_16308167.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
gi|372557486|emb|CCF24287.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
Length = 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 145/346 (41%), Gaps = 83/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+ E+ D+R+P + RN + + + +P +L++ K DL + +
Sbjct: 12 MAKAFRLMRENLKLVDVAFELVDARIPESSRNPEVDKLIGG-KPRLLIMTKADLADPEQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K +S V+ + R+P P L +T+ R V T
Sbjct: 71 RQWKAKF---ESDGHTVLVLDTRDPRT-------PQL------VTKAARRAVEAKT---- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + +G I D R M+ G+PNVG
Sbjct: 111 ---------------AAQLARG-----------IQDQPIR----------AMITGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQA 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE---PSDDIVMLLAKA 297
GM+LA ++D + + + A +++ + V ++L+E D++ +LL A
Sbjct: 187 IGMKLALTGAVKDTIFSKDDAALFLISFFRDYRPEAIVARYHLEENAFEQDNVQILL--A 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K FK +D +S + + RKG G+ LD
Sbjct: 245 ITNKLGFKDDYDKASERL-------------LNDLRKGKLGAFTLD 277
>gi|237742200|ref|ZP_04572681.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256845473|ref|ZP_05550931.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294785221|ref|ZP_06750509.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
gi|229429848|gb|EEO40060.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256719032|gb|EEU32587.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294486935|gb|EFG34297.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
Length = 292
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVACSLLKKMLEQGRWESLKERYKLLEEDRDDNVLENILSKIALR 253
>gi|358466365|ref|ZP_09176195.1| hypothetical protein HMPREF9093_00665 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069115|gb|EHI79063.1| hypothetical protein HMPREF9093_00665 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 290
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ K E + +K
Sbjct: 18 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLL-EKKELEVWKKY 75
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 76 FKEQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 135
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 136 KSRLINRI--------------------------------------------VGKNS--- 148
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 149 ------------AGVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGINLA 193
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ +++ ++ + G + + + LDE DD +M +L+K A++
Sbjct: 194 ISGAIRDEILPIEDVSCALIKKMLEQGRWESLKERYKLLDEDRDDEIMENILSKIALR 251
>gi|170100180|ref|XP_001881308.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643987|gb|EDR08238.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 396
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 68/108 (62%), Gaps = 10/108 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM----KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
V+V+G+PNVGKS+++NALR HM + KA G+T+++ +++K+S PL+Y
Sbjct: 117 VLVIGMPNVGKSTLLNALR--HMGIKGRTPKAFKTSVNPGMTQALSTRLKLSLDPLVYAY 174
Query: 227 DTPGISLPRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
DTPG+ LP + + E G++LA A +++ + +A Y+L+ LN
Sbjct: 175 DTPGVMLPFLGRGAEGAERGVKLALIAGIKEGMYDMQTLAAYLLYRLN 222
>gi|94544013|gb|ABF34061.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
Length = 282
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 140/347 (40%), Gaps = 85/347 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 11 MSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADATRT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E K E I + + K V + L ++D + R
Sbjct: 70 K--EWKAYYESQGIKTLAINSKEQSTVKKVTEAAKEL--MADKIKR-------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LR ++K E T M++G+PN G
Sbjct: 112 -------------LRDRGIQK-----------------------ETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFEDEL 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKA 297
G++LA ++D L+ + + L Y R F L+E + +I+M L +
Sbjct: 186 VGLKLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLTRQ 245
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
FK +D R + +F++ R G G LD+
Sbjct: 246 L----GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 275
>gi|146102212|ref|XP_001469308.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073677|emb|CAM72414.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 464
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 96/351 (27%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+K+ D ++E+ D+R+PFT N +++ +P +++ NK +L N I+E +
Sbjct: 69 VKDADFILEIRDARLPFTTENPNIRKLTAG-KPRLIIFNKAELSNEDSNRAIQEYYERNG 127
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ +FT+ R + + ++ +Q + ++
Sbjct: 128 AF---ALFTSAR----RCWRDVVEAVQRFTTHI--------------------------- 153
Query: 132 NALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+P LP T+ H+ +VVG+PNVGKS++IN+LR
Sbjct: 154 -------------LPPLPYKTVAHVG----------------LVVGMPNVGKSTLINSLR 184
Query: 190 SSH-----------MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+H + + V + P G TR M V +S+ P + + DTPG++LP
Sbjct: 185 LAHEYQFHREDFRRSRSPETVSITP--GTTRG-MKLVPLSKDPSVVLYDTPGLTLPGCFT 241
Query: 239 LECGMRLAACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDE---PSDDIVM 292
E G++LAAC + D + + +A YI L +G+ ++ + +L DD V
Sbjct: 242 KESGLKLAACGIIPTNDVSLPQGMVARYIYDILVASGSSEHMAECLHLPRIPISFDDCVA 301
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + + S + D R F+ F G+ G + LD
Sbjct: 302 MICERS----------GTSGQTEMGNLDPVRAHRFFVHDFTMGNLGKITLD 342
>gi|239826597|ref|YP_002949221.1| ribosomal biogenesis GTPase [Geobacillus sp. WCH70]
gi|338819267|sp|C5D8U8.1|RBGA_GEOSW RecName: Full=Ribosome biogenesis GTPase A
gi|239806890|gb|ACS23955.1| GTP-binding protein HSR1-related [Geobacillus sp. WCH70]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 126 ALIVGIPNVGKSTLINRLAGRNIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 177
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ ++A Y L +L + R + ++LD+ +I
Sbjct: 178 ILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPERLKERYSLDDIPGEI 237
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V L AI K +R VS +V D +V+ I + R G + +
Sbjct: 238 VALF--DAIGK---RRGCLVSGGAV----DYDKVSEIVLHDIRTEKLGRLSFE 281
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 80/145 (55%), Gaps = 10/145 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D+ + E
Sbjct: 12 MAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGN-KPRIVLLNKADMAD---E 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTVM- 118
++ E+ + + + + + G+++I+ + + D + + N M
Sbjct: 68 TVTEQWIAYFERQQLHALAIDAQTGT--GIRQIVSAAKEMLKDKFAKMAAKGIKNPRPMR 125
Query: 119 --VVGVPNVGKSSIINALRSSHMKK 141
+VG+PNVGKS++IN L ++ K
Sbjct: 126 ALIVGIPNVGKSTLINRLAGRNIAK 150
>gi|407068456|ref|ZP_11099294.1| ribosomal biogenesis GTPase [Vibrio cyclitrophicus ZF14]
Length = 311
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SSLRGDKPCVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCR---NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
L E KEQ + I T+ + N + V+K+ P + + N+ RT
Sbjct: 69 QLWIEHFEKEQGVKAIAITTSVKEEVNHVMELVRKLAPHREQMGKNI----RT------- 117
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IIN L
Sbjct: 118 MIMGIPNVGKSTIINCL 134
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR ++ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREQMGKNIRTMIMGIPNVGKSTIINCL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 158 QNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPNLLKE 217
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ ++E P DI ++ +A +K+ RA D + + I + R G+ G
Sbjct: 218 RYQIEELPESDIELM--EAIGRKRGALRAGG--------HIDIHKCSEILLHELRSGTLG 267
Query: 339 SVMLD 343
V L+
Sbjct: 268 KVTLE 272
>gi|331085162|ref|ZP_08334248.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330407945|gb|EGG87435.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 283
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 81/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +D+VIE+ D+R+P + RN + + +N + +++LNK DL K
Sbjct: 10 MTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKN-KARLILLNKSDLAEEKQ- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+D Y + + ++
Sbjct: 68 ----------------------------------------NDAWAEYFKEKGFSVVK--- 84
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+N+ R +K + V + + + R + + N V MVVG+PN
Sbjct: 85 ----------VNSKRGGGIKSIQGV----IQEACKEKIERDRKRGILNRPVRAMVVGIPN 130
Query: 179 VGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGKS+ INAL GKA G K GVT+ +++++ + +LDTPGI P+ +
Sbjct: 131 VGKSTFINAL------AGKACAKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFE 181
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ G+RLA +++D ++ +A ++ +L + +++ E S+D L +
Sbjct: 182 DQTVGLRLAFIGSIKDEILNTEELAMEMITFLTEKYPGVLEEKYSV-EISEDSYECLRRI 240
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A R V N + DT + A + I+ FR G G + L+
Sbjct: 241 A-----ESRHCLVKGNEL----DTNKAAILLIDDFRSGKLGRITLE 277
>gi|398023867|ref|XP_003865095.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503331|emb|CBZ38416.1| hypothetical protein, conserved [Leishmania donovani]
Length = 464
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 96/351 (27%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+K+ D ++E+ D+R+PFT N +++ +P +++ NK +L N I+E +
Sbjct: 69 VKDADFILEIRDARLPFTTENPNIRKLTAG-KPRLIIFNKAELSNEDSNRAIQEYYERNG 127
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ +FT+ R + + ++ +Q + ++
Sbjct: 128 AF---ALFTSAR----RCWRDVVEAVQRFTTHI--------------------------- 153
Query: 132 NALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+P LP T+ H+ +VVG+PNVGKS++IN+LR
Sbjct: 154 -------------LPPLPYKTVAHVG----------------LVVGMPNVGKSTLINSLR 184
Query: 190 SSH-----------MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+H + + V + P G TR M V +S+ P + + DTPG++LP
Sbjct: 185 LAHEYQFHREDFRRSRSPETVSITP--GTTRG-MKLVPLSKDPPVVLYDTPGLTLPGCFT 241
Query: 239 LECGMRLAACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDE---PSDDIVM 292
E G++LAAC + D + + +A YI L +G+ ++ + +L DD V
Sbjct: 242 KESGLKLAACGIIPTNDVSLPQGMVARYIYDILVASGSSEHMAECLHLPRMPISFDDCVA 301
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + + S + D R F+ F G+ G + LD
Sbjct: 302 MICERS----------GTSGQTEMGNLDPVRAHRFFVHDFTMGNLGKITLD 342
>gi|238923884|ref|YP_002937400.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
gi|238875559|gb|ACR75266.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
Length = 281
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 22/197 (11%)
Query: 151 LQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGV 207
++ + + R + + N V MVVG+PNVGKS+ IN+ GKA G K GV
Sbjct: 101 MEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSY------AGKACAKTGNKPGV 154
Query: 208 TRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
T+ +++++ + +LDTPGI P+ ++ G+RLA +++D ++ +A ++
Sbjct: 155 TKG-KQWIRLNKS--VELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVK 211
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI 327
+L + + E +DI+ L+ A+ +K + + PD + A +
Sbjct: 212 FLKAEYPGLLAQRYEVSE-ENDIIELIRAVAVNRKCLSKGGE---------PDYSKAAAL 261
Query: 328 FIEHFRKGSFGSVMLDR 344
I+ FR G G + L+R
Sbjct: 262 IIDDFRSGKLGHITLER 278
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+VIE+ D+R+P + RN + + +N ++L +NK DL +
Sbjct: 10 MTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLIL-MNKADLAD---- 64
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILP-TLQHISDNMTRYHRTEVYNT 115
+E+ R+ + E V+ + R+ + G++ I ++ + + R + + N
Sbjct: 65 ---KERTREWSAFFKEKGFFVVSLDARSKS--GMKSITDIVMEACKEKIERDRKRGIKNR 119
Query: 116 TV--MVVGVPNVGKSSIINA 133
V MVVG+PNVGKS+ IN+
Sbjct: 120 PVRAMVVGIPNVGKSTFINS 139
>gi|294782578|ref|ZP_06747904.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
gi|294481219|gb|EFG28994.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
Length = 292
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 144/341 (42%), Gaps = 78/341 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ K E + +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLL-EKKELEVWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AGVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGVNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIKKK 302
++D ++ ++A ++ + + G + + + L+E DD +M +L+K A++
Sbjct: 196 ISGAIRDEILPIEDVACSLIRKMLKQGRWTSLKDRYKLLEEDRDDEIMENILSKIALRMA 255
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ + + A + +R G LD
Sbjct: 256 MLNKGGEL---------NVLQAAYTLLRDYRAAKLGKFGLD 287
>gi|170017295|ref|YP_001728214.1| GTPase [Leuconostoc citreum KM20]
gi|169804152|gb|ACA82770.1| Predicted GTPase [Leuconostoc citreum KM20]
Length = 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 145/346 (41%), Gaps = 83/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+ E+ D+R+P + RN + + + +P +L++ K DL + +
Sbjct: 12 MAKAFRLMRENLKLVDVAFELVDARIPDSSRNPEVDKLIGG-KPRLLIMTKADLADPEQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K +S V+ + R+P P L +T+ R V T
Sbjct: 71 RQWKAKF---ESDGHTVLVLDTRDPRT-------PQL------VTKAARRAVEAKT---- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + +G I D R M+ G+PNVG
Sbjct: 111 ---------------AAQLARG-----------IQDQPIR----------AMITGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQA 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE---PSDDIVMLLAKA 297
GM+LA ++D + + + A +++ + V ++L+E D++ +LL A
Sbjct: 187 IGMKLALTGAVKDTIFSKDDAALFLISFFRDYRPEAIVARYHLEENAFEQDNVQILL--A 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K FK +D +S + + RKG G+ LD
Sbjct: 245 ITNKLGFKDDYDKASERL-------------LNDLRKGKLGAFTLD 277
>gi|255713332|ref|XP_002552948.1| KLTH0D05214p [Lachancea thermotolerans]
gi|238934328|emb|CAR22510.1| KLTH0D05214p [Lachancea thermotolerans CBS 6340]
Length = 375
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 19/143 (13%)
Query: 171 VMVVGVPNVGKSSIINALR----------------SSHMKKGKAVPVGPKAGVTRSVMSQ 214
V+V G+PNVGKS+++N+LR S ++ K G +AGVTR+
Sbjct: 152 VLVAGMPNVGKSTLVNSLRFVGAARTGNSSESVHGSVAHRRRKVAKTGGQAGVTRATSEC 211
Query: 215 VKISE-KPLIYILDTPGISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
++I++ + IY+ DTPG+SLP R+ E + L+ C ++ +LV + ADY+L+ +N
Sbjct: 212 IRIADHRGGIYLYDTPGVSLPGRVTTREKMLSLSQCGCVKSNLVDPVIQADYLLYLMNLQ 271
Query: 273 GNYRYVDFFNLDEPSDDIVMLLA 295
Y + + P+++I LL
Sbjct: 272 SPAVY-EQYTKGVPTNNIYKLLG 293
>gi|260494157|ref|ZP_05814288.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336401175|ref|ZP_08581947.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336418578|ref|ZP_08598852.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
gi|260198303|gb|EEW95819.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336161532|gb|EGN64533.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336164515|gb|EGN67420.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
Length = 289
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V++ E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRVKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVACSLLRKMLQQGRWESLKERYKLLEEDRDDNVLENILSKIALR 253
>gi|423136942|ref|ZP_17124585.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371961009|gb|EHO78652.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 289
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 69/298 (23%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ SK E +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLV-SKQELDKWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V++ E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AAVGNKPGFTRG-KQWVRVKEG--IELLDTPGILWPKFESETVGINLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIK 300
++D ++ ++A +L + + G + + + L+E DD V+ +L+K A++
Sbjct: 196 ITGAIRDEILPIEDVACSLLRKMLQQGRWESLKERYKLLEEDRDDNVLENILSKIALR 253
>gi|326693009|ref|ZP_08230014.1| GTP-binding protein YlqF [Leuconostoc argentinum KCTC 3773]
gi|339449857|ref|ZP_08653227.1| GTP-binding protein YlqF [Leuconostoc lactis KCTC 3528]
Length = 281
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 148/355 (41%), Gaps = 101/355 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V E+ D+R+P + RN + + + + +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLKLVDVVFELVDARIPESSRNPEVDKLIGS-KPRLLIMTKADLADP--- 67
Query: 61 SLIEEKVRKEQSHIS----EVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
++ R + H V+ + R+P P L +T+ R V
Sbjct: 68 ----DQTRAWKQHFEVQGHAVLVLDTRDPRT-------PQL------VTKAARRAV---- 106
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
A +++ + +G I D R ++ G+
Sbjct: 107 ---------------KAKKAAQLARG-----------IQDQPIR----------ALIAGI 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+
Sbjct: 131 PNVGKSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKF 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--------YVDFFNLDEPSD 288
++ G++LA ++D + + D +LF L+ NYR ++D DE S
Sbjct: 183 EDQTVGLKLALTGAVKDTIFAK---DDAVLFLLDFFRNYRPEAIISRYHLDANVFDEASV 239
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
I++ + +K FK ++ +S V + RKG G LD
Sbjct: 240 QILLDIT----QKLGFKDDYEKASERV-------------LNDLRKGKLGPFTLD 277
>gi|385799834|ref|YP_005836238.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
gi|309389198|gb|ADO77078.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
Length = 290
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 151/355 (42%), Gaps = 84/355 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++ LK VDIVIEV D+R+P + +N L++ + + V VLNK+DL +
Sbjct: 9 MAKAKRILKDDLKMVDIVIEVADARIPVSSQNPDLKKLISK-QTKVTVLNKKDLAD---- 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
PN QK LQ+ S+
Sbjct: 64 ------------------------PNYN--QK---WLQYFSEK----------------- 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N + +IN+L + K+V + T I+ + + R M++G+PNVG
Sbjct: 78 ---NSEAAVLINSLTGEGVSDLKSV-LNNTYDQIAAKLAKKGRNP-RRLRAMIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L S K +G K GVTR V + +K I +LDTPGI P+ + +
Sbjct: 133 KSALINLLAGS-----KITTIGDKPGVTRG-RQWVNVGQK--IRLLDTPGILWPKFSDED 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILF-YLNRTGNYRYVDFFNLD----EPSDDIVMLLA 295
+LA + + + + +A Y L ++ + +D +NLD P D +LA
Sbjct: 185 KAYKLALTGAISNDIY-DAELAAYKLIKFIIEINSQLLLDTYNLDFLEAHPYD----ILA 239
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR-DFLEL 349
A KR ++ V D A+I I F+ G + L++ D LE+
Sbjct: 240 DIA-----RKRGCLMTGGKV----DRNRAAKIIINDFQAAKLGKITLEKPDNLEV 285
>gi|116333442|ref|YP_794969.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098789|gb|ABJ63938.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus brevis ATCC
367]
Length = 286
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 65/283 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ +E+++ VDIV E+ D+R+P RN + + +N +P +++L K+DL + +
Sbjct: 11 MAKAIRQMEENIHLVDIVFELVDARIPAASRNPEVTRIAKN-KPHLIILTKKDLADPQQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ R++ H + + N K + KI
Sbjct: 70 AAWLAYYREQ--HQPAIAIDSRANVTPKQITKI--------------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
S + + L + K K P+ M VGVPNVG
Sbjct: 101 -----AASILADKLAAEKAKGLKERPM----------------------RAMTVGVPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ + KA VG GVT+ Q + + +LDTPGI P+ + E
Sbjct: 134 KSTLLN-----HLVQRKAAQVGDTPGVTKG---QQWLRSSKHLELLDTPGILWPKFKDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL 283
+LA +++ L + ++A + L + + +D ++L
Sbjct: 186 TAQKLALTGAIKEKLYAKDDVALFALNFFRQYHADALIDRYHL 228
>gi|363897286|ref|ZP_09323825.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
gi|361958783|gb|EHL12080.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
Length = 292
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 79/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ L VD +IEV DSR P + RN + ++ + +++ NK DL +
Sbjct: 10 MAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKD-KARIMLFNKADLADPGRT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E +K+ + E+ + R+ + KGV K++ ++ ++ + R + + + ++
Sbjct: 69 KSFMESFQKQGFYTMEI---DARSRSSVKGVNKLI--MESCAELLERKKQKGILSQSI-- 121
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
MV+G+PNV
Sbjct: 122 --------------------------------------------------KAMVLGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+ INA GKA G K GVT+ +KI + + +LDTPGI+ P+ +
Sbjct: 132 GKSTFINAYV------GKATAKTGNKPGVTKGA-QWIKIGKD--LQLLDTPGITWPKFER 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNR-TGNYRYVDFFNLDEPSDDIVMLLAKA 297
G+ LA ++ D ++ + Y+L YL R G+ + ++ + +
Sbjct: 183 EIVGLNLALIGSINDEILPIEELIFYLLKYLTRYYGSALVSRYGETLLGKEEALEAMDAI 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
AIK+ K+ D+ D +V+R+ ++ FR G G + L+
Sbjct: 243 AIKRACIKKGGDI---------DYTKVSRLILDDFRSGRLGRISLE 279
>gi|228902341|ref|ZP_04066498.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|423561756|ref|ZP_17538032.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|434376941|ref|YP_006611585.1| GTPase YlqF [Bacillus thuringiensis HD-789]
gi|228857310|gb|EEN01813.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|401202013|gb|EJR08878.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|401875498|gb|AFQ27665.1| GTPase YlqF [Bacillus thuringiensis HD-789]
Length = 296
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKQYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|421497630|ref|ZP_15944788.1| GTPase YlqF [Aeromonas media WS]
gi|407183365|gb|EKE57264.1| GTPase YlqF [Aeromonas media WS]
Length = 307
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 131 INALRSSHMKKGKAVPILPTLQH----ISDNMTRYHRT------EVYNTTVMVVGVPNVG 180
I L +HM++ K + LP Q I +T H ++ M++G+PNVG
Sbjct: 58 ITELWVAHMEQEKGIKALPLTQQEPEKIKALLTLCHEMLPERNFDLRGVRAMIMGIPNVG 117
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G +AGVT+S Q +I + + DTPG P+++
Sbjct: 118 KSTLINTLAGRIIAR-----TGNEAGVTKS---QQRIKLDNNVILTDTPGFLWPKLNPPS 169
Query: 241 CGMRLAACATLQDHLVGEINI----ADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
CG RLA A ++D + +I ADY L RY L E +++ L+A+
Sbjct: 170 CGYRLAITAAIKDTVFDYADIAMFAADYFLKAYPERIKARY-QIAELPETEIELLELIAR 228
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+RAF D + + I + FR G G + L+
Sbjct: 229 --------QRAFMRKGG----LADLHKASEILVNEFRSGMLGRISLE 263
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VD++IE+ D+R+PF+ N L+ + ++ P++ VLNK DL +
Sbjct: 1 MHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPAIT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +E+ I + T K L TL H M ++ M++
Sbjct: 60 ELWVAHMEQEKG-IKALPLTQQEPEKIKA----LLTLCH---EMLPERNFDLRGVRAMIM 111
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 112 GIPNVGKSTLINTL 125
>gi|322420308|ref|YP_004199531.1| ribosome biogenesis GTP-binding protein YlqF [Geobacter sp. M18]
gi|320126695|gb|ADW14255.1| ribosome biogenesis GTP-binding protein YlqF [Geobacter sp. M18]
Length = 292
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L++I + ++ +D++IEV D+R+PF+ NHLL+Q +N +P + VLNK DL +
Sbjct: 10 MSKALEEISELVRKIDLIIEVLDARLPFSSSNHLLEQVRRN-KPCIKVLNKHDLADPAIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +K S I + + + P K + K + + + Y MVV
Sbjct: 69 KAWVQHFQK-VSGIRALPLSAKKIPEVKNLIK-------LCKQLVPHRGNPGYPIRTMVV 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS++IN L + K
Sbjct: 121 GIPNVGKSTLINTLAGRSIAK 141
>gi|420145723|ref|ZP_14653178.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402623|gb|EJN55941.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 285
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 95/353 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ L VDIV+E+ D+R+P RN +L Q +Q +P +++LNK DL +
Sbjct: 11 MAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQ-KPRLMILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
P L N + H
Sbjct: 66 ----------------------------------PALNAAWINYFKQH------------ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+P + S N K+ + + ++D + R + N + + +G+PN
Sbjct: 80 GLPAISIDSQHNHNVQQIEKQAQVI--------LADKIARQQARGIKNKPIRAICIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+I+N L +K+ A+ G GVT+ Q + + +LDTPGI P+ ++
Sbjct: 132 VGKSTILNRL----VKRNVAI-TGNHPGVTKK---QQWLKAGKSLELLDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDF-FNLDEPSDDIV 291
G +LA ++D L ++A Y L + + YR + F L +P D++
Sbjct: 184 PLVGKKLALTGAIKDSLYHADDVALYALAFFKQYFPERLQKRYRLTEADFELTDP--DLL 241
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + K ++RA S R+ D RKG G LD+
Sbjct: 242 LKITDDLGLKDDYERA------SERLILDC-----------RKGKLGRYTLDQ 277
>gi|148651985|ref|YP_001279078.1| ribosomal biogenesis GTPase [Psychrobacter sp. PRwf-1]
gi|148571069|gb|ABQ93128.1| GTP-binding protein, HSR1-related protein [Psychrobacter sp.
PRwf-1]
Length = 323
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 136/343 (39%), Gaps = 75/343 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I++ + ++D+VIEV D+R+PF+ N PMV L
Sbjct: 14 MNKARNEIKEIMPDMDVVIEVIDARIPFSSEN-----------PMVAALRS--------- 53
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
N G QK P ++ + ++ ++ + + +
Sbjct: 54 -------------------------NEAGFQK--PVIKIL-------NKADLADPELTQI 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + + S + A+ K I+ + + N R V+++G+PNVG
Sbjct: 80 WIEQLEQQSQVKAIACDDNKANDVKRIIQMCKDLIPNKVGTGR----QIKVLIMGIPNVG 135
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + G + VT+S +KI + ++Y DTPG+ P+I+N
Sbjct: 136 KSTLINTLAGRSIAR-----TGDEPAVTKS-QQLIKIDDDIMLY--DTPGMLWPKIENPN 187
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G RLAA ++D ++A Y YL + + + +DE A
Sbjct: 188 SGFRLAATGGIKDTAFDFSDVAGYTAEYLIKAYPELLKERYKIDELPQSDWEFFEMAGRN 247
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + K+ V DT ++ I I R G G + L+
Sbjct: 248 RGFLKKGGVV---------DTYRMSEILINELRSGQLGRITLE 281
>gi|400287310|ref|ZP_10789342.1| GTPase YlqF [Psychrobacter sp. PAMC 21119]
Length = 318
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 75/271 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +I++ + +D+VIEV D+R+P++ N ++ +++ +P++ +LNK DL + +
Sbjct: 14 MNKARNEIKEIMPQMDLVIEVIDARIPYSSENPMVA-ALRGEKPVIKILNKADLADPELT 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + ++QS + + C V++I+ + +
Sbjct: 73 QAWMEYL-EQQSGVKAIA---CDTEKANDVKRIIAICKQL-------------------- 108
Query: 121 GVPN-VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
VPN VG I A M++G+PNV
Sbjct: 109 -VPNKVGTGRQIKA--------------------------------------MIMGIPNV 129
Query: 180 GKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS++IN L G+AV G + VT+S +K+ + ++Y DTPG+ P+++N
Sbjct: 130 GKSTLINTL------AGRAVAKTGDEPAVTKS-QQLIKLDDDIMLY--DTPGMLWPKVEN 180
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL 269
G RLAA ++D ++A Y YL
Sbjct: 181 EHSGYRLAATGGIRDTAFDFADVASYTAEYL 211
>gi|390473473|ref|XP_002756783.2| PREDICTED: mitochondrial GTPase 1-like, partial [Callithrix
jacchus]
Length = 121
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNC 82
I ++++ E + VIFTNC
Sbjct: 94 QKIMQRLQGE--GLKNVIFTNC 113
>gi|84387450|ref|ZP_00990469.1| putative GTPase YlqF [Vibrio splendidus 12B01]
gi|84377703|gb|EAP94567.1| putative GTPase YlqF [Vibrio splendidus 12B01]
Length = 311
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR ++ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREQMGKNIRTMIMGIPNVGKSTIINCL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + + +
Sbjct: 158 QNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPHLLQE 217
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ ++E P DI ++ +A +K+ RA D + + I + R G+ G
Sbjct: 218 RYQIEELPESDIELM--EAIGRKRGALRAGG--------HIDIHKCSEILLHELRSGTLG 267
Query: 339 SVMLD 343
V L+
Sbjct: 268 KVTLE 272
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 15/137 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SSLRGDKPCVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCR---NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
E KEQ + I T+ + N + V+K+ P + + N+ RT
Sbjct: 69 ERWIEHFEKEQGVKAIAITTSVKEEVNHVMELVRKLAPHREQMGKNI----RT------- 117
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IIN L
Sbjct: 118 MIMGIPNVGKSTIINCL 134
>gi|320168236|gb|EFW45135.1| Gnl3l protein [Capsaspora owczarzaki ATCC 30864]
Length = 676
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 142/333 (42%), Gaps = 72/333 (21%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKHESL 62
++ +K + + D+++EV D+R P R +++ + ++ P +VLVLNK DL+
Sbjct: 169 REFKKVVTSADVILEVLDARDPLGCRCPQIEKRIMSLSPNKKIVLVLNKIDLVP------ 222
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
E V K H + PT+ + T+ RT
Sbjct: 223 -REVVEKWLKHF----------------RLEFPTIAFKAS--TQSQRT------------ 251
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMV--VGVPNVG 180
N+G S++ A SS + TL + N Y R TTV V +G PNVG
Sbjct: 252 -NLGHSNVSTATASSDLLSSSECLGADTLVKLLKN---YSRNADIKTTVTVGIIGQPNVG 307
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSIIN+L K+ KA VGP GVTR +I I +LD PGI P E
Sbjct: 308 KSSIINSL-----KRSKACNVGPTPGVTRQAQ---EIHLDKNIKLLDCPGIVFPD----E 355
Query: 241 CGMRLAACATLQDHLVGEINI------ADYILFYLNRTGNYRYVDFFNL---DEPSDDIV 291
G + + L G + I A ++ LNR + ++ +NL + P++ +V
Sbjct: 356 SG-----TSNPDNVLRGAVKIEQIEDPAAHVEIVLNRCPRDKIMELYNLPLFESPAEFLV 410
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV 324
ML K KK DV + S+ ++G +
Sbjct: 411 MLAQKRGKLKKGGVADIDVVARSILQDWNSGRI 443
>gi|304436822|ref|ZP_07396788.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370194|gb|EFM23853.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 296
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 76/337 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++++LK+VD+V+E+ D+R+P + N +L++ V +P ++VLNK DL +
Sbjct: 27 VQENLKSVDVVVELLDARIPMSSANPVLREIVGG-KPRLIVLNKADLAD----------- 74
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
++++ +Y+ E + + V V V G
Sbjct: 75 ------------------------------EYVTRAWVKYYAAE-WLSAVPVDAVKGKGT 103
Query: 128 SSIINAL-RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
++ A+ R + K K V H + M++G+PNVGKSS+IN
Sbjct: 104 KELVQAIARCAKPKTDKLV---------------QHGAKPRAARCMILGIPNVGKSSLIN 148
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
L G V + GVTR+ +++ + + +LD PGI P+ ++ + + LA
Sbjct: 149 RLSG-----GTKTKVENRPGVTRA-KQWIRLGAQ--LELLDMPGILWPKFEDQQAALHLA 200
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
+ D++ ++ +L L + LDEP + + LL K+ +
Sbjct: 201 FTGAINDNVYDVGSVVLLLLNRLREDTPQSLCTRYRLDEPLPEGIELLDAIGRKRGCLRA 260
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ D + ++ + FR G G + LD
Sbjct: 261 GGKI---------DYEKAEQVILSDFRSGRLGRISLD 288
>gi|342215090|ref|ZP_08707755.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589739|gb|EGS33002.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
Length = 297
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 79/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +H K VD+VIE+ D+R+P + N ++++ + + +P V++LNK DL N K
Sbjct: 16 MAKATRMITEHKKKVDVVIELLDARIPRSSANPVIRELIGD-KPHVVILNKCDLANPKAT 74
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN-MTRYHRTEVYNTTV-- 117
E + E H + + N KG ++++ T++ ++ + R+ + + TV
Sbjct: 75 KEWIEFFKNEGIHAIAI-----DSKNGKGNKQLVKTVESLAQPIIDRWLKKGIKGRTVRT 129
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
M++G+PNVGKS++IN L
Sbjct: 130 MILGIPNVGKSTLINKL------------------------------------------- 146
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
G ++ A + H + + V VG + +LDTPG+ P+ +
Sbjct: 147 -AGSAATRTANKPGHTRGQQWVKVGKN------------------LELLDTPGVLWPKFE 187
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ RLA + D + ++ +L YL + + L E V + +A
Sbjct: 188 DQRAAARLAMTGAISDDVYDLDSVIKQLLAYLEEHEPTLLHERYKLTEEERTSVDTMLEA 247
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ +R VS V D +V R+ + +R G + D
Sbjct: 248 IGR----RRGCLVSGGVV----DYDKVRRVILTDYRNNKLGYITFD 285
>gi|116617875|ref|YP_818246.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381336352|ref|YP_005174127.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116096722|gb|ABJ61873.1| Ras superfamily GTP-binding protein YlqF [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|356644318|gb|AET30161.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 284
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 121/280 (43%), Gaps = 76/280 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V E+ DSR+P + RN + + + N +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLKLVDVVFELVDSRIPESSRNPEVDKLIGN-KPRLLIMTKADLADP--- 67
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
++ R + H V+ + R+P P L +T+ R V
Sbjct: 68 ----DQTRAWKKHFEAQGYTVLVLDTRDPRT-------PQL------VTKAARRAV---- 106
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
A +++ + KG I D R M+ GV
Sbjct: 107 ---------------EAKKAAQLAKG-----------IQDQPIR----------AMISGV 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+++N H+ P + GVT+ + + +K K + +LD+PG+ P+
Sbjct: 131 PNVGKSTLLN-----HLVMKNVAPTADRPGVTKKI-AWLKTPTK--LELLDSPGVLWPKF 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR 276
++ GM+LA ++D + + + A LF +N YR
Sbjct: 183 EDQNIGMKLALTGAVKDTIFAKDDAA---LFLINFFREYR 219
>gi|417752384|ref|ZP_12400594.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus dysgalactiae subsp. equisimilis SK1249]
gi|333771839|gb|EGL48742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 267
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 89/344 (25%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ ++++LK+VD V + D+R+P + +N +L + V + +P +++LNK DL ++
Sbjct: 1 RQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLMILNKADLADA-------- 51
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
RT+ + G+
Sbjct: 52 ------------------------------------------TRTKEWKAYYESQGI--- 66
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSS 183
K+ IN+ S +KK + ++D + R + T+ M++G+PN GKS+
Sbjct: 67 -KTLAINSKEQSTVKKVTEA----AKELMADKIKRLRDRGIQKETLRTMIIGIPNAGKST 121
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM 243
++N L K VG K GVT+ Q + + ILDTPGI P+ ++ G+
Sbjct: 122 LMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKELEILDTPGILWPKFEDELVGL 173
Query: 244 RLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN---LDEPSDDIVMLLAKAAIK 300
+LA ++D L+ + + L Y R F L+E + +I+M L +
Sbjct: 174 KLALTGAIKDQLLPMDEVTIFGLNYFKTHYPSRLTKRFKNIPLEEEAPEIIMTLTRQL-- 231
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
FK +D R + +F++ R G G LD+
Sbjct: 232 --GFKDDYD------RFYT-------LFVKEVRDGKLGQYTLDQ 260
>gi|340752547|ref|ZP_08689346.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
gi|340567306|gb|EEO37392.2| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
Length = 292
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 78/341 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
IE++LK +D+V+E+ D+R+P + +N + +N + ++VLNK DL+ K E + +K
Sbjct: 20 IEENLKLIDVVLEIVDARIPLSSKNPNIASLSKN-KKRIIVLNKSDLL-EKKELEVWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KEQ EV+ + N K + + + + + +T ++V+G+PNVG
Sbjct: 78 FKEQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKKVSTRIIVLGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G TR V+I E I +LDTPGI P+ ++ G+ LA
Sbjct: 151 ------------AGVGNKPGFTRG-KQWVRIKEG--IELLDTPGILWPKFESETVGVNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVD--FFNLDEPSDDIVM--LLAKAAIKKK 302
++D ++ +IA ++ + G + + + L+E DD +M +L+K A++
Sbjct: 196 ISGAIRDEILPIEDIACSLIRKMLTQGRWTSLKDRYKLLEEDRDDEIMENILSKIALRMA 255
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ + + A + +R G LD
Sbjct: 256 MLNKGGEL---------NVLQAAYTLLRDYRAAKLGKFGLD 287
>gi|381182604|ref|ZP_09891401.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
gi|380317493|gb|EIA20815.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
Length = 287
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKS++IN L ++ K G K GVT++ Q I + +LDTPG
Sbjct: 123 AMILGIPNVGKSTLINRLVKKNIAK-----TGNKPGVTKA---QQWIKVGKTLELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D L+ IA Y L +L + + + L + ++
Sbjct: 175 ILWPKFEDQEVGFKLALTGAIKDDLLNMEEIALYGLHFLEKNYPNQLAAWLGLPDYAEKT 234
Query: 291 -VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+LA AIK +F + D PD A + R+ G D
Sbjct: 235 DTEILAAIAIKHGYFDKYKD---------PDYSRAAEWVVREIRQQKIGRFSFD 279
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD++ E+ D+R+P + N +L++ + + V++LNK D + E
Sbjct: 10 MAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQ-KKRVIILNKSD---AADE 65
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV- 117
+ E V KE+ ++ V + N +++ L +++ R + +
Sbjct: 66 KITAEWVAHFKEKGLLA-VPVNAQQGKNLHAIERAAQEL--MAEKFARQKERGMRPRAIR 122
Query: 118 -MVVGVPNVGKSSIINALRSSHMKK 141
M++G+PNVGKS++IN L ++ K
Sbjct: 123 AMILGIPNVGKSTLINRLVKKNIAK 147
>gi|416134962|ref|ZP_11598423.1| GTP-binding protein [Enterococcus faecium E4452]
gi|364092392|gb|EHM34773.1| GTP-binding protein [Enterococcus faecium E4452]
Length = 286
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + N +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSHNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV-- 117
L +E RK Q H++ I KG++ ++P + + + R + +
Sbjct: 69 KLWQEYFRK-QGHLALAITAQ----ESKGIKGLVPAAKEALKEKRARDAARGIKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 124 MVLGIPNVGKSTLMNRL 140
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|423615901|ref|ZP_17591735.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
gi|401260438|gb|EJR66611.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
Length = 296
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NLD+ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLDDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L +E + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKEWIAYFKEKGHMA--ISINAQ--AGQGMKEITAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|157887527|emb|CAM98714.1| hypothetical protein [Plasmodiophora brassicae]
gi|160332820|emb|CAL69926.1| hypothetical protein [Plasmodiophora brassicae]
Length = 300
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 143/358 (39%), Gaps = 95/358 (26%)
Query: 1 MGRGLKDIEKHL------------KNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLV 48
M RGL H+ K IV+EV D+R+PF+ + SV R L+
Sbjct: 1 MSRGLSWFPGHMAAAMREMASSRVKQAHIVVEVRDARVPFSSACNAAAMSVVPARKRSLI 60
Query: 49 L-NKRDL--INSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105
L NK DL ++ + + I ++R+EQ + V+F + ++
Sbjct: 61 LMNKTDLSGLSPQTQDGIARRIREEQPD-ANVLFISAKS--------------------- 98
Query: 106 RYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE 165
HRTE +L ++ + ++R+ T
Sbjct: 99 -QHRTERD---------------------------------VLSVIRQQAAGLSRFSST- 123
Query: 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYI 225
V++VGVPNVGKS+I+N +R S K A P G TR ++S+ K+ P + +
Sbjct: 124 --TRVVLIVGVPNVGKSTILNCIRRSSACKVAAQP-----GCTR-IISEHKL---PGLLL 172
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE 285
LD+PGI P I + RLA + DH V + ++ Y+L L L
Sbjct: 173 LDSPGILPPNIPDEVTAARLALTHAIPDHSVDKHDLVTYLLQCLKTL----PAALGGLSS 228
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ LL + A +++ F + ++ D A + +R G+ G + LD
Sbjct: 229 NVSNTETLLEEVARRRR-----FHLGNDGEW---DVDRAASFLVAEYRAGNLGRLCLD 278
>gi|422327403|ref|ZP_16408430.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
gi|371663243|gb|EHO28433.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
Length = 288
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 69/271 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ L VD+VIE+ D+R+P +N ++++ QN +P ++VL+K+D ++
Sbjct: 15 MTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQN-KPRLIVLSKKDKADAAAT 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L C +Q N T VV
Sbjct: 74 KLW-----------------------CSALQ----------------------NETTRVV 88
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ + ++ I + S + + + R R + T+ MVVGVPN
Sbjct: 89 ALDILKENIIARIVEESRL-------------LMQAKIERMKRRGIRPRTIRAMVVGVPN 135
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + K K G + GVTR+ + K+++ + +LDTPG+ + ++
Sbjct: 136 VGKSTFIN-----RISKKKVAVTGDRPGVTRA-LQWSKVNQN--LELLDTPGVLWSKFED 187
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYL 269
G+ LA ++D ++ IA + + YL
Sbjct: 188 ETVGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|423395861|ref|ZP_17373062.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|423406737|ref|ZP_17383886.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
gi|401653603|gb|EJS71147.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|401660027|gb|EJS77510.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
Length = 296
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPARLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L +E + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKEWIAYFKEKGHMA--ISINAQ--AGQGMKEITAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|229174504|ref|ZP_04302036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
gi|228609064|gb|EEK66354.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
Length = 296
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ ++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGQMA--ISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|404483942|ref|ZP_11019157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
gi|404342954|gb|EJZ69323.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
Length = 279
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 138/345 (40%), Gaps = 81/345 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + +K VDI+IE+ D+R P RN + + N + +++LNK DL +
Sbjct: 10 MTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEIMELGSN-KSRIIILNKADLSDESAN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KEQ + E +F + R N GV ++ ++++S
Sbjct: 69 NRWASHY-KEQGY--ECMFMDSRKKN--GVNALIKAIENVSKEK---------------- 107
Query: 121 GVPNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
R K+G K P+ MV G+PNV
Sbjct: 108 --------------RERDAKRGIKNRPV----------------------RAMVAGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN++ M K G K GVT+ I K I +LDTPGI P+ ++
Sbjct: 132 GKSTLINSVSGRAMAK-----TGNKPGVTK---GNQWIKLKGQIELLDTPGILWPKFEDE 183
Query: 240 ECGMRLAACATLQDHLVG--EINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
G +A ++ D ++ E+ + F NR + F +++ D+ +L+ A
Sbjct: 184 NIGEMIAFIGSINDMIIDIRELGLELIKWFIKNRP--EILTERFEMEDGDDENAVLIKIA 241
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
+ R N + D + A IF+ FR G G V L
Sbjct: 242 NL------RGCTKKGNEL----DYDKAASIFVNEFRSGKLGRVTL 276
>gi|229031468|ref|ZP_04187468.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
gi|228729757|gb|EEL80737.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
Length = 296
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 11/157 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDRLT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV- 117
+ I K+Q IS N + +G+++I + + + + + +
Sbjct: 69 KQWIAYFKEKDQMAIS----INAQ--AGQGMKEIAAACKVLVKEKFDKMAAKGIRPRAIR 122
Query: 118 -MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|426195403|gb|EKV45333.1| hypothetical protein AGABI2DRAFT_74137 [Agaricus bisporus var.
bisporus H97]
Length = 403
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
V+V+G+PNVGKS+++NALRS + K KA+ G+T++V +++K+S P +Y DT
Sbjct: 128 VLVIGMPNVGKSTLLNALRSLGLERKTPKALKTSAFPGLTQTVSNRLKLSLDPPVYAYDT 187
Query: 229 PGISLPRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
PG+ LP + + E G++LA A ++ L + A Y+L+ LN
Sbjct: 188 PGVMLPFLGRGEEGAERGIKLALIAGIKPGLYDIQDQAAYLLYRLN 233
>gi|377552395|gb|AFB69796.1| mitochondrial GTPase, partial [Aspergillus flavus]
Length = 199
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK---PLIYILD 227
VMVVG+PNVGKS++IN LR+ + K KAV G + G+TR + + VKI E+ +Y+LD
Sbjct: 120 VMVVGMPNVGKSTLINNLRNQGVHKAKAVQTGGQPGITRKIGTPVKIIERENGSHVYVLD 179
Query: 228 TPGISLPRIDNLECGMRLA 246
TPG+ +P + + E ++LA
Sbjct: 180 TPGVFMPYVPDAENMLKLA 198
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
GLK ++ L ++D V+E D R+P T N + ++++ R ++ V KRDL S
Sbjct: 13 GLKKMQNMLSSIDYVVECRDYRVPVTSINPMFEEALGKTRRLI-VYTKRDLGAVSGSSAQ 71
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
++ ++ ++ + + V IL L++ ++ + + VMVVG+P
Sbjct: 72 QQAEKRIRNFDKNSAVFFVSSSSRPDVSSILKHLRNDAEGPDK-----LVGCRVMVVGMP 126
Query: 124 NVGKSSIINALRSSHMKKGKAV 145
NVGKS++IN LR+ + K KAV
Sbjct: 127 NVGKSTLINNLRNQGVHKAKAV 148
>gi|407408455|gb|EKF31889.1| GTP-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 452
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 149/356 (41%), Gaps = 82/356 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M L+ + + +++ D V+E+ D+R+PF+ N L++ + RP ++V NK ++ N
Sbjct: 58 MQLALRTLTEKVRDADFVLEIRDARLPFSTENPNLRKVISG-RPRLIVFNKAEMSNEDCN 116
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ K + +FT+ + + + + +Q ++ + +V +VV
Sbjct: 117 RAIQQYYEKTGNF---ALFTSAK----RSWRDTVEAVQRFVTHILPAQQFKVTAHVGLVV 169
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS++IN+LR +H + +HR +
Sbjct: 170 GMPNVGKSTLINSLRLAHEYQ-------------------FHREDFRRP----------- 199
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+ +AV + P G T+ V V + P I + D+PG++LP + E
Sbjct: 200 -------------RTPEAVSITP--GTTKGV-KLVPVCRDPNIVLYDSPGLTLPGCFSKE 243
Query: 241 CGMRLAACATL--QDHLVGEINIADYILFYLNRTG-NYRYVDFFNLDEP----SDDIVML 293
++LAAC + D + +A YI L G + + +L D I M+
Sbjct: 244 ASLKLAACGIIPTNDITLPRSIVARYIYDVLTAAGISEHMAECLHLPRAPISFDDCIAMI 303
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV----ARIFIEH-FRKGSFGSVMLDR 344
++ + D G + A++F+ H F+ G+ G + LDR
Sbjct: 304 CERSGTSGQ----------------TDLGNIDPVRAQMFLIHDFQMGNMGRITLDR 343
>gi|444323327|ref|XP_004182304.1| hypothetical protein TBLA_0I01250 [Tetrapisispora blattae CBS 6284]
gi|387515351|emb|CCH62785.1| hypothetical protein TBLA_0I01250 [Tetrapisispora blattae CBS 6284]
Length = 358
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 171 VMVVGVPNVGKSSIINALR---SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
V++ G PNVGKS++IN+LR +S + K G +AGVTR+ ++I P Y++D
Sbjct: 147 VLIAGPPNVGKSTLINSLRRVSNSLRSQKKVAKTGGQAGVTRNTSELIRIL--PNAYVVD 204
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN---RTGNYRYVDFFNLD 284
TPG+ P + + + LA C +L+D +V + DY+L+ +N + RY F
Sbjct: 205 TPGVGFPVLPH-HRALPLALCGSLKDGVVDPFILTDYLLYLINLHPLGSHERYPGQFK-- 261
Query: 285 EPSDDIVMLLAK 296
+P++DI +L +
Sbjct: 262 DPTNDIYTVLER 273
>gi|229192007|ref|ZP_04318977.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
gi|228591558|gb|EEK49407.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|312883732|ref|ZP_07743453.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368615|gb|EFP96146.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 314
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ + ++ +P+V VLNKRDL + +
Sbjct: 13 MHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISE-LRGDKPVVKVLNKRDLADPELT 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT-VMV 119
L + KE ++I + T + + V KIL + ++ HR E+ + M+
Sbjct: 72 KLWIDHFEKE-NNIKAIAITTS---SVQEVNKILELCRKLAP-----HREEIGKSIRTMI 122
Query: 120 VGVPNVGKSSIINAL 134
+G+PNVGKS+IIN L
Sbjct: 123 MGIPNVGKSTIINTL 137
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 162 HRTEVYNTT-VMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISE 219
HR E+ + M++G+PNVGKS+IIN L G+AV G + VTR Q +I+
Sbjct: 110 HREEIGKSIRTMIMGIPNVGKSTIINTL------AGRAVAQTGNQPAVTRR---QQRINL 160
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + R +
Sbjct: 161 QNGVVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKAYPERLKE 220
Query: 280 FFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGS 339
+ ++ + + ++ + ++ + V D + + I + R G+ G
Sbjct: 221 RYEIETLPESDLEVMEEIGRRRGALRSGGRV---------DLHKCSEILLHELRGGTLGQ 271
Query: 340 VMLDR 344
+ L+R
Sbjct: 272 ITLER 276
>gi|336317734|ref|ZP_08572585.1| ribosome biogenesis GTP-binding protein YlqF [Rheinheimera sp.
A13L]
gi|335878081|gb|EGM76029.1| ribosome biogenesis GTP-binding protein YlqF [Rheinheimera sp.
A13L]
Length = 311
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 24/216 (11%)
Query: 135 RSSHMKKGKAVPI-------LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
R K KA+PI + L + + M ++ M++G+PNVGKS+IIN
Sbjct: 74 RFEQEKGIKAIPISQQNPEQIKALLQLCNQMLPDRNLDIRGARAMIMGIPNVGKSTIINT 133
Query: 188 LRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
L + K G +AGVT+ + ++++ + + DTPG P++ CG RLA
Sbjct: 134 LAGRTIAK-----TGNEAGVTK-IQQRIRLDNN--VILTDTPGFLWPKLSPASCGYRLAV 185
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRA 307
++D +IA + YL + + + + L E ++ + LL ++ ++
Sbjct: 186 TGAIKDTAFDYADIAIFAADYLLKAYPQQVMARYQLKEQPENDLALLDALGERRGCMRKG 245
Query: 308 FDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V D + I I R G FG V L+
Sbjct: 246 GVV---------DLQKAGSILITELRAGLFGPVSLE 272
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VDI+IE+ D+R+PF+ N L+ + ++ P++ VLNK DL +
Sbjct: 10 MHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPE-LRGDTPVIKVLNKADLADPAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L E R EQ + I + +NP + + L + + M ++ M++
Sbjct: 69 ALWVE--RFEQEKGIKAIPISQQNP------EQIKALLQLCNQMLPDRNLDIRGARAMIM 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS+IIN L + K
Sbjct: 121 GIPNVGKSTIINTLAGRTIAK 141
>gi|260893263|ref|YP_003239360.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
gi|260865404|gb|ACX52510.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
Length = 271
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 30/178 (16%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
MVVG+PNVGKSS IN + +G+A VG K GVT+ +K++ P +LDTPG+
Sbjct: 115 MVVGIPNVGKSSFIN-----RLVRGRAAAVGAKPGVTKG-KQWIKVT--PNFELLDTPGV 166
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF------FNLDE 285
PR ++ E G++LA L++ ++ A ++ F+L Y D F +
Sbjct: 167 LWPRFEDPEVGLKLAVTGALKEEVIDVEAAALWLAFWLQE----HYPDALAKRYPFAAGK 222
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + L + R F + V D + A ++ FR+G G LD
Sbjct: 223 APEEFLEELGR--------YRGFFLEGGCV----DRVKAAVALLKDFREGRLGRFTLD 268
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+ HL V +V E+ D+R+P++ RN + + + +P V+VLNK DL + + +
Sbjct: 17 LRAHLPLVQVVFELLDARIPYSSRNPDIAELLAG-KPRVVVLNKEDLADPQATRAWLAYL 75
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
+E H + + + KG+ K+ L+ ++ + RT + MVVG+PNVGK
Sbjct: 76 ERE-GHPALAV----NSLTGKGLNKLEEALRRVA----KPGRTGILRG--MVVGIPNVGK 124
Query: 128 SSIINAL 134
SS IN L
Sbjct: 125 SSFINRL 131
>gi|239631518|ref|ZP_04674549.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980689|ref|ZP_12621369.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
gi|239525983|gb|EEQ64984.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525012|gb|EKP99919.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
Length = 286
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VDIV+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDIVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|206972755|ref|ZP_03233685.1| GTPase family protein [Bacillus cereus AH1134]
gi|218898991|ref|YP_002447402.1| ribosomal biogenesis GTPase [Bacillus cereus G9842]
gi|228909663|ref|ZP_04073486.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|228940926|ref|ZP_04103485.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228954114|ref|ZP_04116143.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228966783|ref|ZP_04127827.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228973855|ref|ZP_04134431.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980445|ref|ZP_04140755.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|229071336|ref|ZP_04204559.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|229081093|ref|ZP_04213603.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|229180114|ref|ZP_04307458.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|384187898|ref|YP_005573794.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402558836|ref|YP_006601560.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|410676212|ref|YP_006928583.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|423359126|ref|ZP_17336629.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|423385341|ref|ZP_17362597.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|423412357|ref|ZP_17389477.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|423425974|ref|ZP_17403005.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|423431858|ref|ZP_17408862.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|423437293|ref|ZP_17414274.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|423503485|ref|ZP_17480077.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|423528301|ref|ZP_17504746.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|423635391|ref|ZP_17611044.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|449090779|ref|YP_007423220.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200277|ref|YP_007480358.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|206732320|gb|EDZ49512.1| GTPase family protein [Bacillus cereus AH1134]
gi|218544561|gb|ACK96955.1| GTPase family protein [Bacillus cereus G9842]
gi|228603323|gb|EEK60800.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|228702137|gb|EEL54613.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|228711790|gb|EEL63742.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|228779265|gb|EEM27522.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|228785880|gb|EEM33883.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228792882|gb|EEM40440.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228805680|gb|EEM52270.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228818762|gb|EEM64828.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228849952|gb|EEM94783.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|326941607|gb|AEA17503.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401084998|gb|EJP93244.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|401104425|gb|EJQ12402.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|401110721|gb|EJQ18620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|401116614|gb|EJQ24452.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|401120448|gb|EJQ28244.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|401278142|gb|EJR84078.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|401635397|gb|EJS53152.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|401787488|gb|AFQ13527.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|402451964|gb|EJV83783.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|402458839|gb|EJV90579.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|409175341|gb|AFV19646.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|449024536|gb|AGE79699.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105670|gb|AGG02610.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|409077059|gb|EKM77427.1| hypothetical protein AGABI1DRAFT_43497 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 403
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM--KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
V+V+G+PNVGKS+++NALRS + K KA+ G+T++V +++K+S P +Y DT
Sbjct: 128 VLVIGMPNVGKSTLLNALRSLGLERKTPKALKTSAFPGLTQTVSNRLKLSLDPPVYAYDT 187
Query: 229 PGISLPRI----DNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
PG+ LP + + E G++LA A ++ L + A Y+L+ LN
Sbjct: 188 PGVMLPFLGRGEEGAERGIKLALIAGIKPGLYDIQDQAAYLLYRLN 233
>gi|423582048|ref|ZP_17558159.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
gi|401212927|gb|EJR19668.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQ--AGQGIKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|227889893|ref|ZP_04007698.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|268319576|ref|YP_003293232.1| hypothetical protein FI9785_1101 [Lactobacillus johnsonii FI9785]
gi|227849337|gb|EEJ59423.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|262397951|emb|CAX66965.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 279
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN PM+ L K+
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRN-----------PMIGQLTKK-------- 51
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ HI + + +P +Q + TRY++ E N + +
Sbjct: 52 ----------KPHIIVLNKADLADP----IQ---------TKKWTRYYQDE-GNFVISMD 87
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+S+ ++ + +K + + S+ M R V + G+PN G
Sbjct: 88 AQHTTNMTSLFKIIKLAGKEKTDKL----IAKGASNPMIR----------VAIAGIPNCG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+IIN + + A VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 134 KSTIINRMVGRN-----AAIVGDKPGVTRG---QSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--YVDFFNLDEPSDDIV----MLL 294
G +LAAC ++ + ++A +++ +L + NYR V F + D + +LL
Sbjct: 186 VGYKLAACGAIKADIFHPDDVALFVIEFLKQ--NYRDDLVKFARISSEEMDSMSNPDLLL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +N M D + + ++ RKG G + D
Sbjct: 244 A---------------MTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|393762120|ref|ZP_10350748.1| GTPase YlqF [Alishewanella agri BL06]
gi|392606901|gb|EIW89784.1| GTPase YlqF [Alishewanella agri BL06]
Length = 311
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 137 SHMKKGKAVPI-------LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+ K +A+PI + L + ++M E+ M++G+PNVGKS++IN L
Sbjct: 76 AEQKNVRAIPISQQQPEQIKALLELCNSMLPERNLELRAARAMIMGIPNVGKSTLINTLA 135
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACA 249
+ K G +AGVT++ Q +I + + + DTPG P++ CG RLA
Sbjct: 136 GRIIAK-----TGNEAGVTKA---QQRIKLENNVILTDTPGFLWPKLSPTTCGYRLAVTG 187
Query: 250 TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFD 309
++D + +IA + YL + + F L E ++ + LL +++ ++
Sbjct: 188 AIKDTVFDYADIALFAADYLLQAYPAAVMARFGLTEQPENDLALLDAIGMRRGAMRKGGV 247
Query: 310 VSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V D + I I R G+ G + L+
Sbjct: 248 V---------DLEKAGAILITELRAGNLGPITLE 272
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+I + + VDI+IE+ D+R+PF+ N L+ Q ++ P + VLNK DL +
Sbjct: 10 MHKARKEIAEVMPQVDIIIEMLDARIPFSSENPLVPQ-LRKDTPCIKVLNKADLADPALT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + EQ ++ + + + K L + ++M E+ M++
Sbjct: 69 ARWVDYF-AEQKNVRAIPISQQQPEQIKA-------LLELCNSMLPERNLELRAARAMIM 120
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 121 GIPNVGKSTLINTL 134
>gi|257884858|ref|ZP_05664511.1| GTP-binding protein [Enterococcus faecium 1,231,501]
gi|257820696|gb|EEV47844.1| GTP-binding protein [Enterococcus faecium 1,231,501]
Length = 286
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 7/136 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + +K VDIV E+ D+R+P + RN +L Q +Q +P +++LNK DL + +
Sbjct: 10 MAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQ-KPRLVLLNKADLADPQQT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV--M 118
L +E RK Q H++ I T + KG+ + + + + R + + M
Sbjct: 69 KLWQEYFRK-QGHLALAI-TAQESKGIKGL--VAAAKEALKEKRARDAARGIKPRAIRAM 124
Query: 119 VVGVPNVGKSSIINAL 134
V+G+PNVGKS+++N L
Sbjct: 125 VLGIPNVGKSTLMNRL 140
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ +++ + + +LDTPG
Sbjct: 123 AMVLGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG-QQWLRLGNE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD-EPSDD 289
I P+ ++ E G +LA ++D LV ++A Y L + R + R D + L E +
Sbjct: 175 ILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFFARYYSGRISDRYGLSIEQEEK 234
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ L K+ +K +D S V + R+G G LDR
Sbjct: 235 LAPELLMDITAKRGYKEDYDRGSELV-------------VHDIRQGKLGRYTLDR 276
>gi|228922592|ref|ZP_04085892.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|365159385|ref|ZP_09355566.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
gi|228837021|gb|EEM82362.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363625383|gb|EHL76424.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|323451733|gb|EGB07609.1| hypothetical protein AURANDRAFT_27328 [Aureococcus anophagefferens]
Length = 389
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 78/350 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ R +++ +LK VD+VIE D+R+ T + + + + RP V+V DL +
Sbjct: 59 IARAERELRDYLKRVDVVIEARDARIGATTAHPDVSEWI-GARPRVVVFTFADLAPAN-- 115
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ ++E S V F + + K LQ I + +T+ R
Sbjct: 116 --VVRDWKEELSRDVPVFFVDAKRGGAK-------ALQGIRNELTKAGR----------- 155
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++N R+ KKG I+P ++ V+G PNVG
Sbjct: 156 ---------VVNEKRA---KKG----IMPRAARVA-----------------VIGYPNVG 182
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRS---VMSQVKISEKPLIY-ILDTPGISLPRI 236
KS++IN L K + KAGVTRS V S+ K L + +LD+PGI +
Sbjct: 183 KSALINKLAGRKAAKSEN-----KAGVTRSLNWVRSKPSTQGKGLPFELLDSPGIIPAKQ 237
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
N RLA C + D +A+ ++ L + RY D LL+K
Sbjct: 238 LNQRMAARLAICGDIGDASYDTRLVAEALVEELTTRRDERYA--------RDGGASLLSK 289
Query: 297 AAIKKKWFKRAFDVSSNS---VRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ F A DV + +R D G A + FR G G V L+
Sbjct: 290 YGVDPDVF--APDVYVDELADLRYEGDAGTAAMAILTDFRAGRLGKVALE 337
>gi|335046480|ref|ZP_08539503.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333760266|gb|EGL37823.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 292
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 79/346 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ L VD +IEV DSR P + RN + ++ + +++ NK DL +
Sbjct: 10 MAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKD-KARIMLFNKADLADPART 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRN-PNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E +K+ + E+ + R+ + KGV K++ ++ ++ + R + + + ++
Sbjct: 69 KSFMESFQKQGFYTMEM---DARSRSSVKGVNKLV--MESCAELLERKKQKGILSQSI-- 121
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
MV+G+PNV
Sbjct: 122 --------------------------------------------------KAMVLGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+ INA GKA G K GVT+ +KI + + +LDTPGI+ P+ +
Sbjct: 132 GKSTFINAYV------GKATAKTGNKPGVTKGA-QWIKIGKD--LQLLDTPGITWPKFER 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNR-TGNYRYVDFFNLDEPSDDIVMLLAKA 297
G+ LA ++ D ++ + Y+L YL R G+ + ++ + +
Sbjct: 183 EIVGLNLALIGSINDEILPIEELIFYLLKYLTRYYGSALVSRYGETLLGKEEALEAMDAI 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
AIK+ K+ D+ D +V+R+ ++ FR G G + L+
Sbjct: 243 AIKRACIKKGGDI---------DYTKVSRLILDDFRSGRLGRISLE 279
>gi|435853380|ref|YP_007314699.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
gi|433669791|gb|AGB40606.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
Length = 286
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 140/344 (40%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +K ++ L +D+VIE+ D+R+P + R N +
Sbjct: 10 MAKAMKKVKNRLDLIDVVIELLDARIPISSR------------------------NPDLD 45
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+E+K R +I N ++ +G +++ Y + + M
Sbjct: 46 QLLEDKRR--------IIALNKKDLANQG----------LTNQWQEYFSNQGISVAAM-- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N+L +KK A+ + + + + + + +M+VG+PNVG
Sbjct: 86 -----------NSLNGKGVKKLFALANQLMVDKQKELAAQGRKRK--DIRLMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS +IN L +KG A G K GVT++ Q I K +LDTPG+ P+ + E
Sbjct: 133 KSQLINQLS----QKG-ATRTGNKPGVTKA---QQWIKLKEGFELLDTPGVLWPKFEEQE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C +++ +A ++ L + + F LD + D L+A K
Sbjct: 185 VGVKLAICGAIKEGNFDSELLAYKLVEMLQDIAPDKLKERFKLDYLTSDTYQLVADIGRK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + + D V+ I + F++G G + L+R
Sbjct: 245 RGCLQSGGRI---------DRDRVSNIILREFKEGKLGRLTLER 279
>gi|414597377|ref|ZP_11446945.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE E16]
gi|390481873|emb|CCF29006.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE E16]
Length = 279
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 145/346 (41%), Gaps = 83/346 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++L+ VD+ E+ D+R+P + RN + + + +P +L++ K DL + +
Sbjct: 12 MAKAFRLMRENLQLVDVAFELVDARIPESSRNPEVDKLIGG-KPRLLIMTKADLADPEQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K +S V+ + R+P P L +T+ R V T
Sbjct: 71 RQWKAKF---ESDGHTVLVLDTRDPRT-------PQL------VTKAARRAVEAKT---- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++ + +G I D R M+ G+PNVG
Sbjct: 111 ---------------AAQLARG-----------IQDQPIR----------AMITGIPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQA 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE---PSDDIVMLLAKA 297
GM+LA ++D + + + A +++ + V ++L+E D++ +LL A
Sbjct: 187 IGMKLALTGAVKDTIFSKDDAALFLISFFRDYRPEAIVARYHLEENAFEQDNVQILL--A 244
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K FK +D +S + + RKG G+ LD
Sbjct: 245 ITNKLGFKDDYDKASERL-------------LNDLRKGKLGAFTLD 277
>gi|30021926|ref|NP_833557.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 14579]
gi|218236121|ref|YP_002368639.1| ribosomal biogenesis GTPase [Bacillus cereus B4264]
gi|228960054|ref|ZP_04121718.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047525|ref|ZP_04193115.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|229111309|ref|ZP_04240862.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|229129114|ref|ZP_04258087.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|229146409|ref|ZP_04274780.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|229152037|ref|ZP_04280232.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|296504333|ref|YP_003666033.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|423585753|ref|ZP_17561840.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|423628931|ref|ZP_17604680.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|423641081|ref|ZP_17616699.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|423649701|ref|ZP_17625271.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|423656697|ref|ZP_17631996.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
gi|81580508|sp|Q819W8.1|RBGA_BACCR RecName: Full=Ribosome biogenesis GTPase A
gi|29897482|gb|AAP10758.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218164078|gb|ACK64070.1| GTPase family protein [Bacillus cereus B4264]
gi|228631386|gb|EEK88020.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|228637042|gb|EEK93501.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|228654351|gb|EEL10216.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|228672085|gb|EEL27376.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|228723772|gb|EEL75127.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|228799570|gb|EEM46523.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325385|gb|ADH08313.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|401233099|gb|EJR39595.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|401268476|gb|EJR74524.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|401280142|gb|EJR86064.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|401282981|gb|EJR88878.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|401290438|gb|EJR96132.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|423612055|ref|ZP_17587916.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
gi|401247062|gb|EJR53406.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
Length = 296
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEITAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|339480648|ref|ZP_08656307.1| GTP-binding protein YlqF [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 281
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 91/350 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V E+ D+R+P + RN + + + +P +L++ K DL + +
Sbjct: 12 MAKAFRLMRENLKLVDVVFELVDARIPESSRNPEIDKLIGQ-KPRLLIMTKADLADPEQT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+++ +EQ + V+ + R+P P L +T+ R V
Sbjct: 71 RAWKKRF-EEQGYT--VLVLDTRDPRT-------PQL------VTKAARRAV-------- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A + + + +G I D R M+ GVPNVG
Sbjct: 107 -----------EAKKEAQLARG-----------IQDQPIR----------AMITGVPNVG 134
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ P + GVT+ V + +K K + +LD+PG+ P+ ++
Sbjct: 135 KSTLLN-----HLVMKNVAPTADRPGVTKKV-AWLKTPTK--LELLDSPGVLWPKFEDQT 186
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI-------VML 293
GM+L+ ++D + + + A +++ + + ++ ++L SDDI V+L
Sbjct: 187 IGMKLSLTGAVKDTIFAKDDAALFLIAFFRQYRPEAVIERYHL---SDDIFEQENVDVLL 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K FK +D +S + + RK G+ LD
Sbjct: 244 ---AITTKLGFKDDYDKASERL-------------LNDLRKNKLGAFTLD 277
>gi|291546335|emb|CBL19443.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus sp.
SR1/5]
Length = 285
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 152 QHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVT 208
+ + R R + N V MV G+PNVGKS+ IN GKA G K GVT
Sbjct: 102 EACKEKTERDRRRGIKNRPVRAMVAGIPNVGKSTFINTF------AGKACAKTGNKPGVT 155
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFY 268
+ +++++ + +LDTPGI P+ ++ E GMRLA +++D ++ +A ++ Y
Sbjct: 156 KG-KQWIRLNKS--VELLDTPGILWPKFEDQEVGMRLAYIGSIKDDILNIEELALGLIGY 212
Query: 269 LNRTGNYRYVDFFNLDEPSD--DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVAR 326
L + +N++E DI+ +AKA + K+ ++ D + +R
Sbjct: 213 LQEFYPAAIRERYNVEEELKPLDILTAVAKA---RGCLKKGEEL---------DYEKASR 260
Query: 327 IFIEHFRKGSFGSVMLD 343
+ +E FR G G V L+
Sbjct: 261 LLLEEFRSGKLGKVTLE 277
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D++IE+ D+R+P + RN + + +N M+L LNK DL + +
Sbjct: 10 MTKAKRQMQEDIKLIDLIIELVDARVPLSSRNPDIDELGKNKARMIL-LNKADLADERQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL--QHISDNMTRYHRTEVYNTTV- 117
E +++ + + + RN KG K + + + R R + N V
Sbjct: 69 RAWMEYFKEKGIY---AVSIDSRN---KGSMKAVSAAITEACKEKTERDRRRGIKNRPVR 122
Query: 118 -MVVGVPNVGKSSIINALRSSHMKK 141
MV G+PNVGKS+ IN K
Sbjct: 123 AMVAGIPNVGKSTFINTFAGKACAK 147
>gi|284047853|ref|YP_003398192.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
gi|283952074|gb|ADB46877.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
Length = 295
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 69/257 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E +LK VD+V+E+ D+R+P + N +LQQ + + ++VLNK D+ +
Sbjct: 19 MTKAKRMMEANLKLVDVVVELLDARIPRSSANPMLQQLI-GAKQKIVVLNKTDMADP--- 74
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E+ + S+ + FT +C+
Sbjct: 75 ----ERTQAWLSYFKKNSFTAL-EVDCQ-------------------------------- 97
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPN 178
K + AL S+ K G+ PTL+ ++ + V N + VM+VG+PN
Sbjct: 98 ------KGKGVKALVSAIQKAGE-----PTLE-------KWRKKGVRNRSIRVMIVGIPN 139
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS++IN L + K KA K GVTR Q I K L +LDTPG+ P+ DN
Sbjct: 140 VGKSTLINRL----LGKNKAAAQN-KPGVTRG--PQWVILGKGL-ELLDTPGVLWPKFDN 191
Query: 239 LECGMRLAACATLQDHL 255
E G LA +++ +
Sbjct: 192 PETGFCLAVTGAIREEV 208
>gi|419707040|ref|ZP_14234546.1| GTP-binding protein [Streptococcus salivarius PS4]
gi|383283280|gb|EIC81238.1| GTP-binding protein [Streptococcus salivarius PS4]
Length = 284
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 89/348 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K+VD V + D+R+P + +N +L + V + +P +L+LNK DL
Sbjct: 11 MSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLLILNKSDL------ 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+DN +RT+ + T
Sbjct: 64 ----------------------------------------ADN----NRTKEWRTYFEKQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
G+ K+ IN+ S +K + +S+ + R + T+ M++G+PN
Sbjct: 80 GI----KTLAINSKEQSTVK----LVTDAAKSLMSEKIQRLRERGIQKETLRTMIIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 132 AGKSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFED 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLA 295
G++LA ++D L+ + + L Y R + F +L+E + +I+M +
Sbjct: 184 ELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTYYPERLEERFKGIDLEEEAPEIIMEMT 243
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + +F++ R G G LD
Sbjct: 244 ----QKLGFREDYD------RFYS-------LFVKDVRDGKLGHYTLD 274
>gi|146422631|ref|XP_001487251.1| hypothetical protein PGUG_00628 [Meyerozyma guilliermondii ATCC
6260]
Length = 514
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 60/249 (24%)
Query: 9 EKHLKNV----DIVIEVHDSRMPFTGRNHLLQQSV-QNI-RPMVLVLNKRDLINSKHESL 62
+K KNV D+V+ V D+R P R+ ++Q+V QN + ++LVLNK DLI +
Sbjct: 167 DKIFKNVVEASDVVLYVLDARDPEATRSRKVEQAVLQNPGKRLILVLNKVDLIPAP---- 222
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
V K+ ++ + F +P + + H E+ N+
Sbjct: 223 ----VLKQWLNVLKSSFPT------------VPVKASMGSTNSTSHNKELTNS------- 259
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+ +++ AL+S K N+ R + V V+G PNVGKS
Sbjct: 260 --ITAKNLLQALKSYAAK---------------SNLKR-------SIVVGVIGYPNVGKS 295
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
SIINAL + H KA PVG AGVT S M +VK+ K + ILD+PGI P +L
Sbjct: 296 SIINALTNRHGNNAKACPVGNLAGVTTS-MREVKVDNK--LKILDSPGIVFPDEWSLAKK 352
Query: 243 MRLAACATL 251
+R + A L
Sbjct: 353 LRSSTEAKL 361
>gi|389595383|ref|XP_003722914.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|323364142|emb|CBZ13149.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 464
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 96/351 (27%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+K+ D ++E+ D+R+PFT N +++ +P +++ NK +L N I+E +
Sbjct: 69 VKDADFILEIRDARLPFTTENPNIRKLTAG-KPRLIIFNKAELSNEDSNRAIQEYYERNG 127
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ +FT+ R + + ++ +Q + ++
Sbjct: 128 AF---ALFTSAR----RCWRDVVEAVQRFTTHI--------------------------- 153
Query: 132 NALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
+P LP T+ H+ +VVG+PNVGKS++IN+LR
Sbjct: 154 -------------LPPLPYKTVAHVG----------------LVVGMPNVGKSTLINSLR 184
Query: 190 SSH-----------MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
+H + + V + P G TR M V +S+ P + + DTPG++LP
Sbjct: 185 LAHEYQFHREDFRRSRSPETVSITP--GTTRG-MKLVPLSKDPPVVLYDTPGLTLPGCFT 241
Query: 239 LECGMRLAACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDE---PSDDIVM 292
E G++LAAC + D + + +A YI L +G+ ++ + +L DD V
Sbjct: 242 KESGLKLAACGIIPTNDVSLPQGMVARYIYDILVASGSSEHMAECLHLPRVPISFDDCVA 301
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ + + S + D R F+ F G+ G + LD
Sbjct: 302 MICERS----------GTSGQTEMGNLDPVRAHRFFVHDFIMGNLGKITLD 342
>gi|297587482|ref|ZP_06946126.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
gi|297574171|gb|EFH92891.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
Length = 285
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+M+VG+PNVGKS+IIN L + K P GVTRS ++I K + +LDTPG
Sbjct: 126 MMIVGIPNVGKSTIINKLSNRQSAKTGNTP-----GVTRS-NQWIRIKGK--MELLDTPG 177
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
+ P+ ++ E G+ LA ++D ++ E N+A ++ L +++D + +
Sbjct: 178 VLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKLMSIDPQILEKRYSVDTQNKET 237
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ AI++ + ++ D +V+ I I+ FRK G + L+
Sbjct: 238 IEIMDDIAIRRGCLLKGKNI---------DYSKVSSIVIDEFRKTKLGRISLE 281
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + I++++K VDIV+ + DSR+ + N +++ +++ +P +++LNK D+ + K
Sbjct: 13 MKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKD-KPQLILLNKMDMADPKIT 71
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV-- 117
++ I +K + + + N + + KI PT + I +++ + + + +
Sbjct: 72 QNWINYFAKKNITALP------IDSKNGRNLDKIEPTAKKILEDVLANRKDKNIKSEIIR 125
Query: 118 -MVVGVPNVGKSSIINALRSSHMKKGKAVP 146
M+VG+PNVGKS+IIN L + K P
Sbjct: 126 MMIVGIPNVGKSTIINKLSNRQSAKTGNTP 155
>gi|50365355|ref|YP_053780.1| GTPase [Mesoplasma florum L1]
gi|50363911|gb|AAT75896.1| predicted GTPase [Mesoplasma florum L1]
Length = 315
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 123/273 (45%), Gaps = 73/273 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK+IE+ + VD+VIE+ D+R P++ RN + ++N +P++ VL+K D+
Sbjct: 12 MNKTLKNIEEKIPVVDLVIEILDARAPYSSRNLTFSKILKN-KPILYVLSKADI------ 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+PN I+ ++ E N TVMV+
Sbjct: 65 ----------------------ADPN-------------ITKEWVEFY--EKKNNTVMVL 87
Query: 121 G--VPNVGKSSI--INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
N+ K I IN +K KA ++ +L V+V+G+
Sbjct: 88 DDKQKNIVKPLIDLINKATKEKQEKDKAKGMVNSL-----------------INVLVIGI 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+ IN L K K+V G K G+TR + + +S+ I +LDTPG+ ++
Sbjct: 131 PNVGKSTFINRLI-----KNKSVKAGNKPGLTRGI-QLIHLSQ--FISLLDTPGVLPAKL 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYL 269
+N + A ++++ + + +A ++ YL
Sbjct: 183 ENETVATNICAINSIKEDVYPKERVAGKLMQYL 215
>gi|387927054|ref|ZP_10129733.1| GTPase YlqF [Bacillus methanolicus PB1]
gi|387589198|gb|EIJ81518.1| GTPase YlqF [Bacillus methanolicus PB1]
Length = 289
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PN GKS++IN L ++ K P GVTR+ +K+ ++ + +LDTPG
Sbjct: 123 AMIVGIPNAGKSTLINRLARKNIAKTGNTP-----GVTRA-QQWIKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ ++A Y L +L R R D + L DDI
Sbjct: 175 ILWPKFEDQEVGLKLALTGAIKDTILNLQDVAVYALRFLEREYPDRLKDRYQLGIIHDDI 234
Query: 291 VMLL 294
L
Sbjct: 235 AELF 238
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 81/151 (53%), Gaps = 13/151 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDI+ E+ D+R+P++ RN ++ + +Q+ +P +L+LNK D+ + +
Sbjct: 10 MAKARREVTEKLKLVDIIFELVDARIPYSSRNPMIDEVIQH-KPRLLLLNKADMAD---Q 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT---- 116
S +E + Q + + N + G+++I+ + I ++ R +
Sbjct: 66 SKTKEWIEYFQENDIRALAINSQAGT--GMKEIVALSKEILKE--KFDRMKAKGLKPRAI 121
Query: 117 -VMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
M+VG+PN GKS++IN L ++ K P
Sbjct: 122 RAMIVGIPNAGKSTLINRLARKNIAKTGNTP 152
>gi|417989648|ref|ZP_12630150.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
gi|410537741|gb|EKQ12311.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
Length = 286
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VDIV+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDIVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARCIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|332653030|ref|ZP_08418775.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
gi|332518176|gb|EGJ47779.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
Length = 292
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 30/222 (13%)
Query: 136 SSHMKKGKAVPILPTLQH--ISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSS 191
+ K GK V + + D + R+ + V M+VGVPNVGKS+ IN
Sbjct: 84 ETDAKTGKGVGQFSAVVQNVLKDQIARWQERGLVGRPVRAMIVGVPNVGKSTFIN----- 138
Query: 192 HMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
+ K K G + GVTR Q ++ L +LDTPGI P+ ++ E G+RLA +
Sbjct: 139 KVAKRKTAKAGDRPGVTRG--KQWVTVDRGL-ELLDTPGILWPKFEDEEIGLRLAFTGAV 195
Query: 252 QDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIVM---LLAKAAIKKK 302
+D ++ + +++ +L Y+ DE +D+ LL A
Sbjct: 196 KDEIMDVETLGCHLMTFLATYYPDALAAGYKLSAVPQRDEEENDVAYGYRLLETCAQ--- 252
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S DT +AR+ ++ +R G G L++
Sbjct: 253 --KRGMRISGGEF----DTERMARVLLDEYRGGKLGRFTLEQ 288
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ IE LKNVDIV+E+ D+R+P + RN + ++ +P +++LN+ D + E
Sbjct: 15 RQIEADLKNVDIVVEIIDARIPISSRNPDI-DAICAGKPRLVILNRADQADPAQNKAWGE 73
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV--MVVGV 122
RK + E T+ + KGV + +Q++ D + R+ + V M+VGV
Sbjct: 74 WFRKRGCSVLE---TDAK--TGKGVGQFSAVVQNVLKDQIARWQERGLVGRPVRAMIVGV 128
Query: 123 PNVGKSSIINALRSSHMKKGKAVP 146
PNVGKS+ IN + K P
Sbjct: 129 PNVGKSTFINKVAKRKTAKAGDRP 152
>gi|421074171|ref|ZP_15535211.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
gi|392527677|gb|EIW50763.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
Length = 286
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKSS+IN L + KAV K GVTR + I + + +LDTPG
Sbjct: 126 AMILGIPNVGKSSLINRLLGT-----KAVRTADKPGVTRG-KQWITIGKN--LELLDTPG 177
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP-SDD 289
+ P+ ++ E G +LA + D + +L +L + R ++ +NL P +D
Sbjct: 178 VLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFLRENYSDRLIERYNLSSPLPED 237
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
LL ++ + + R RI + FR G+ LDR
Sbjct: 238 STELLGLIGARRGCLRSGGLIDYEKAR---------RIILNEFRGSKLGNFTLDR 283
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I+ +LK VD+VIE+ D+R+P + N ++ Q ++ +P V+ LNK DL +
Sbjct: 13 MTKALRMIQANLKLVDVVIELLDARIPVSSANPVIHQILEG-KPRVVALNKIDLAEPEW- 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN---TTV 117
K + H+ + + KG + ++ ++ + + N
Sbjct: 71 ----TKQWVDTFHVQGLQVVTIDSMTGKGTKALVSQVEQLGSAKAAKLVAKGVNPRAVRA 126
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKSS+IN L
Sbjct: 127 MILGIPNVGKSSLINRL 143
>gi|154345343|ref|XP_001568613.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|2570231|gb|AAC80186.1| GTP-binding protein homolog [Leishmania braziliensis]
gi|134065950|emb|CAM43733.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 464
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 92/349 (26%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+K+ D ++E+ D+R+PFT N +++ +P +++ NK +L N I+E +
Sbjct: 69 VKDADFILEIRDARLPFTTENPNIRKLTAG-KPRLIIFNKAELSNEDSNRAIQEYYERNG 127
Query: 72 SHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 131
+ C + VQ+
Sbjct: 128 AFALFTSAQRCWKDVVEAVQRF-------------------------------------- 149
Query: 132 NALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
++H+ +P LP T+ H+ +VVG+PNVGKS++IN+LR
Sbjct: 150 ----TTHI-----LPPLPYKTVAHVG----------------LVVGMPNVGKSTLINSLR 184
Query: 190 SSH---------MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+H + V K G TR M V +S+ P + + DTPG++LP E
Sbjct: 185 LAHEYQFHREDFRRSRSPETVSIKPGTTRG-MKLVPLSKDPPVVLYDTPGLTLPGCFTKE 243
Query: 241 CGMRLAACATL--QDHLVGEINIADYILFYLNRTGNYRYV-DFFNLDEPS---DDIVMLL 294
G++LAAC+ + D + + +A YI L +G+ ++ + +L DD + ++
Sbjct: 244 SGLKLAACSIIPTNDVSLPQGMVARYIYDILVASGSSEHMAECLHLPRVPITFDDCIAMI 303
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + S + D R F+ F G+ G + LD
Sbjct: 304 CERS----------GTSGQTEMGNLDPVRAHRFFVHDFTMGNLGKITLD 342
>gi|197119296|ref|YP_002139723.1| ribosomal biogenesis GTPase [Geobacter bemidjiensis Bem]
gi|197088656|gb|ACH39927.1| ribosomal biogenesis GTPase [Geobacter bemidjiensis Bem]
Length = 299
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I + ++ +D++IEV D+R+PF+ NHLL+Q +N +P + VLNK DL +
Sbjct: 10 MSKALEQISELVRKIDVIIEVLDARLPFSSSNHLLEQVRRN-KPCIKVLNKNDLADPAIT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +K S + + P K + K+ ++ + N Y MVV
Sbjct: 69 RAWVQHFQK-ASGVRALPLVAKNIPEVKNLVKL---IKQVCPN----RGNPGYPIRTMVV 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS++IN L + K
Sbjct: 121 GIPNVGKSTLINTLAGKSLAK 141
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
Y MVVG+PNVGKS++IN L + K VG K VT + +I + I +
Sbjct: 113 YPIRTMVVGIPNVGKSTLINTLAGKSLAK-----VGDKPAVT---LKPQQIDLRNGILLF 164
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
DTPG+ P +D+ RLAA + + + N+ + Y+ R
Sbjct: 165 DTPGLLWPVMDDQGGAYRLAASGAIGANALDYTNVGVFAAAYMMR 209
>gi|227535119|ref|ZP_03965168.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187260|gb|EEI67327.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 286
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+V+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDLVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLLAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|291459086|ref|ZP_06598476.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291418340|gb|EFE92059.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 295
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 87/350 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I L+ V++VIE+ D+R P + RN + ++ + +++LNK DL +
Sbjct: 10 MAKAKRNIRNDLQLVELVIEILDARCPESSRNPDIDSFAKD-KARIMLLNKADLADPVQN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E R+ + E+ + R G++K+ P ++
Sbjct: 69 RAFSEAFRRRGFYSMEI---DARER--AGLKKLNPLIERAC------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ II + K+G P++ MV+G+PN G
Sbjct: 105 -------APII----ERNQKRGILTPVI---------------------RAMVLGIPNAG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN+ M + G + GVTR +K++ + + +LDTPGI+ P+ +
Sbjct: 133 KSTFINSYVGKAMAR-----TGNRPGVTRG-NQWIKVNRR--LQLLDTPGITWPKFEREI 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA--- 297
G+ LA ++ D ++ + Y+L YL R Y D +L E + +M + +A
Sbjct: 185 VGLNLALIGSVNDEILNLSELVFYLLKYLIRY----YPD--SLPERYGEGLMSVREALPA 238
Query: 298 ----AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A K+ K+ + D ARI +E FR G G + L+
Sbjct: 239 FSEIARKRGCVKKGGEA---------DYERTARIILEDFRSGRLGRITLE 279
>gi|406670839|ref|ZP_11078084.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
gi|405582355|gb|EKB56361.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
Length = 282
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 146/343 (42%), Gaps = 78/343 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ ++ +K VD+VIE+ D+R+P + RN ++Q+ + +P +L+LNK DL +
Sbjct: 11 MAKAKREAQEKIKLVDLVIELADARIPESSRNPIIQEIIGQ-KPSLLILNKADLADPATT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E+ R + + + R+ K + ++ I D M +
Sbjct: 70 RAWEDYYRSQGQQALSLDAQHLRS--TKAINRV------IQDQMQDFF------------ 109
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A R + K +A+ +M++G+PNVG
Sbjct: 110 ------------AKRKAKGIKPRAI------------------------RLMILGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN + + G K GVT++ +KI ++ +LDTPGI P+ ++
Sbjct: 134 KSTLINRFVGKNQAQ-----TGNKPGVTKA-QRWLKIGKE--FELLDTPGILWPKFEDPM 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G LA ++D L+ +A ++ L + + + L+ P D + + I+
Sbjct: 186 TGHHLALTGAIKDQLLPMQELALVLIEQLRQHYPGLLENHYQLEVPED---LSSSDYLIQ 242
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
F +A ++ + F GE I+ FR G G++ L+
Sbjct: 243 ---FTQAMNLGED----FNQAGEG---LIQDFRSGKLGALSLE 275
>gi|422304696|ref|ZP_16392037.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
gi|389790101|emb|CCI13969.1| GTPase family protein [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 95/351 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + +++HLK VD+V+EV D+R+P + + + N +P +L+LN+ D+I E
Sbjct: 11 IAKAERKLKEHLKLVDVVLEVRDARIPLASHHPQVDDWIGN-KPRLLILNRLDMI---PE 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD--NMTRYHRTEVYNTT-V 117
S ++ V +S V FTN + + V+ I+ + I D N R R +
Sbjct: 67 SAQQQWVTWFKSQGETVYFTNAK--QGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRA 124
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+V+G PNVGKS++IN L
Sbjct: 125 VVIGFPNVGKSALINRL------------------------------------------- 141
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
+G+ + +A R AGVTR + V+IS+ + +LD PG+ R+D
Sbjct: 142 -LGRKVVASARR---------------AGVTRQ-LQWVRISDT--LELLDAPGVIPSRLD 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADY---ILFYLNRTG--NYRYVDFFNLDEPSDDIVM 292
N + ++LA C + D IA +L LN G RY LD +D +
Sbjct: 183 NQKDAVKLAICEDIGDAGYDNQRIAAAFVDLLVELNYEGLLQSRY-GLNTLDMTGEDFIE 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LA ++ D A + FRKG G++ L+
Sbjct: 242 KLA------------------DLKYQEDKERAAMQLLNDFRKGIIGAIPLE 274
>gi|42519031|ref|NP_964961.1| hypothetical protein LJ1105 [Lactobacillus johnsonii NCC 533]
gi|41583318|gb|AAS08927.1| hypothetical protein LJ_1105 [Lactobacillus johnsonii NCC 533]
Length = 279
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 133/349 (38%), Gaps = 88/349 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E +L +D++IEV D+R+P + RN ++ Q + +P ++VLNK DL +
Sbjct: 11 MNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKK-KPHIIVLNKADLADPIQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + + + N + KI+ + V +
Sbjct: 70 KKWTHYYQDEGNFV--ISMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPMIRVAIA 127
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PN GKS+IIN + VG
Sbjct: 128 GIPNCGKSTIINRM--------------------------------------------VG 143
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+++ I VG K GVTR Q + K + ILDTPGI P+ + E
Sbjct: 144 RNAAI---------------VGDKPGVTR---GQSWLKTKTNVQILDTPGILWPKFSDQE 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR--YVDFFNLDEPSDDIV----MLL 294
G +LAAC ++ + ++A +++ +L + NYR V F + D + +LL
Sbjct: 186 VGYKLAACGAIKADIFHPDDVALFVIEFLKQ--NYRDDLVKFARISSEEMDSMSNPDLLL 243
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +N M D + + ++ RKG G + D
Sbjct: 244 A---------------MTNKYGMRDDYDKFSLFMLQRLRKGKLGRITFD 277
>gi|392960563|ref|ZP_10326031.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|421054680|ref|ZP_15517645.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|421061048|ref|ZP_15523432.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|421063740|ref|ZP_15525686.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
gi|421071543|ref|ZP_15532659.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392440361|gb|EIW18041.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|392446808|gb|EIW24079.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392452123|gb|EIW29076.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|392455140|gb|EIW31947.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|392462310|gb|EIW38405.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
Length = 286
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKSS+IN L + KAV K GVTR + I + + +LDTPG
Sbjct: 126 AMILGIPNVGKSSLINRLLGT-----KAVRTADKPGVTRG-KQWITIGKN--LELLDTPG 177
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEP-SDD 289
+ P+ ++ E G +LA + D + +L +L + R ++ +NL P +D
Sbjct: 178 VLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFLRENYSDRLIERYNLSSPLPED 237
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
LL ++ + + R RI + FR G+ LDR
Sbjct: 238 STELLGLIGARRGCLRSGGLIDYEKAR---------RIILNEFRGSKLGNFTLDR 283
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I+ +LK VD+VIE+ D+R+P + N ++ Q ++ +P V+ LNK DL +
Sbjct: 13 MTKALRMIQANLKLVDVVIELLDARIPVSSANPVIHQILEG-KPRVVALNKIDLAEPEW- 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN---TTV 117
K + H + + +G + ++ ++ + + N
Sbjct: 71 ----TKQWVDTFHAQGLQVVTIDSMTGRGTKALVSQVEQLGSAKAAKLVAKGVNPRAVRA 126
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKSS+IN L
Sbjct: 127 MILGIPNVGKSSLINRL 143
>gi|116494883|ref|YP_806617.1| GTPase [Lactobacillus casei ATCC 334]
gi|116105033|gb|ABJ70175.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus casei ATCC
334]
Length = 286
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+V+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDLVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QAIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|381210003|ref|ZP_09917074.1| hypothetical protein LGrbi_08796 [Lentibacillus sp. Grbi]
Length = 284
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M++G+PNVGKS++IN L + K +G K GVT+ Q I K +LDTPG
Sbjct: 123 AMIIGIPNVGKSTLINRLANK-----KIAQIGDKPGVTKK---QQWIKVKGDFELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G RLAA T++D L+ ++ +++ Y+ + R + + ++ +D+
Sbjct: 175 ILWPKFEDERVGYRLAAVGTIKDQLLPLDDVVAFVIQYMQKFYPDRLEERYGINRDMEDM 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ ++ + +V+ + +VA + I R G G++ L+
Sbjct: 235 WDIFVSIGKQRGALESGGNVNFD---------KVADLVIHDLRTGKLGNITLE 278
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++E+ LK D VIE+ D+R P + +N +LQ +Q M++++ K N E
Sbjct: 10 MAKAKREVEEKLKLTDFVIELVDARTPLSSQNPMLQNVLQQKLKMIVMMKKDLADNRMTE 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ K + + I N ++ + K V + L + + M++
Sbjct: 70 KWLS--YYKGRGIPAIAIDVNSKS-DIKCVVQTAKDLGQTKMDKLKRKGVNPRPARAMII 126
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 127 GIPNVGKSTLINRL 140
>gi|225389109|ref|ZP_03758833.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
gi|225044827|gb|EEG55073.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
Length = 290
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINAL 188
I+A +K+ +AV + + + R + + N + MVVG+PNVGKS+ IN+
Sbjct: 76 IDARNKGTLKQIQAV----VQEACKEKIERDRKRGILNRPIRAMVVGIPNVGKSTFINSF 131
Query: 189 RSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA 247
GKA G K GVT+ I + +LDTPGI P+ ++ + G++LA
Sbjct: 132 ------AGKACAKTGNKPGVTKGNQW---IRLNKTLELLDTPGILWPKFEDQQVGLKLAL 182
Query: 248 CATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD-DIVMLLAKAAIKKKWFKR 306
++ D ++ +A ++ LNR + + L+ D D + +L + A ++ +
Sbjct: 183 IGSINDEILNRDELALELVNVLNRRYPGVLAERYQLENAGDCDTIQVLEQVARQRSCLAK 242
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++ D + AR+ ++ FR G G + L+
Sbjct: 243 GGEL---------DLPKAARLLLDDFRSGRLGRITLE 270
>gi|402312857|ref|ZP_10831780.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
gi|400367433|gb|EJP20449.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium ICM7]
Length = 279
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 135/343 (39%), Gaps = 77/343 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + +K VDI+IE+ D+R P RN + + N + +++LNK DL +
Sbjct: 10 MTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEIMELGSN-KSRIIILNKADLSDESAN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KEQ + E +F + R N V++
Sbjct: 69 NRWASHY-KEQGY--ECMFMDSRKKN---------------------------GVNVLIK 98
Query: 121 GVPNVGKSSIINALRSSHMKKG-KAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ NV K R K+G K P+ MV G+PNV
Sbjct: 99 AIENVSKDK-----RERDAKRGIKNRPV----------------------RAMVAGIPNV 131
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN++ M K G K GVT+ I K I +LDTPGI P+ ++
Sbjct: 132 GKSTLINSVSGRAMAK-----TGNKPGVTK---GNQWIKLKGQIELLDTPGILWPKFEDE 183
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G +A ++ D ++ + ++ + + + F +++ D+ +L+ A +
Sbjct: 184 NIGEMIAFIGSINDMIIDIRELGLELIKWFIKNKPEILTERFEMEDGDDENAVLIKIANL 243
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVML 342
R N + D + A IF+ FR G G + L
Sbjct: 244 ------RGCTKKGNEL----DYDKAAGIFVNEFRSGKLGRITL 276
>gi|282850262|ref|ZP_06259641.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
gi|282579755|gb|EFB85159.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
Length = 301
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 81/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I +++K VD+VIE+ D+R+P + N ++ + V +P +++LNK DL + K
Sbjct: 14 MAKATRMITEYIKKVDVVIELLDARIPRSSANPVIFELVGQ-KPHIVLLNKVDLADPKAT 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN-MTRYHRTEVYNTTV-- 117
E K+ + + + KG +K+L T++H+S + R+ + + +V
Sbjct: 73 KEWTEFFTKQG-----ITVLAIDSKSGKGNKKLLSTVEHLSKPIIDRWVAKGIRSRSVRT 127
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+++G+PNVGKS++IN+L
Sbjct: 128 IILGIPNVGKSTLINSL------------------------------------------- 144
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
G ++ A ++ H + + V +G + +LDTPG+ P+++
Sbjct: 145 -AGSAATRTANKAGHTRGQQWVKIGKN------------------LELLDTPGVLWPKLE 185
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS-DDIVMLLAK 296
+ RLA + D + ++ +L YL VD + L E D+ +L
Sbjct: 186 DQRAAARLAMTGAISDDVYDLEHVIKQLLNYLLTNTPNILVDRYKLKEDEMTDVDRILES 245
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+R VS V D + RI ++ +R G++ LD+
Sbjct: 246 IG-----RRRGCLVSGGIV----DFDKARRIILQDYRNTKLGTITLDQ 284
>gi|417983479|ref|ZP_12624116.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|417986759|ref|ZP_12627324.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|417992910|ref|ZP_12633262.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|417996266|ref|ZP_12636547.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|417999094|ref|ZP_12639307.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|418002043|ref|ZP_12642170.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|418015272|ref|ZP_12654847.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
gi|410524493|gb|EKP99401.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|410528226|gb|EKQ03085.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|410532701|gb|EKQ07403.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|410535577|gb|EKQ10194.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|410540034|gb|EKQ14556.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|410545194|gb|EKQ19499.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|410551748|gb|EKQ25791.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
Length = 286
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+V+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDLVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTEDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|395242086|ref|ZP_10419085.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480447|emb|CCI85325.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
Length = 279
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 140/352 (39%), Gaps = 92/352 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E+ + +D+V+EV D+R+P + RN ++ V +P V++LNK DL
Sbjct: 11 MNKARNQLEEKINLIDVVVEVLDARIPSSSRNPMIADLV-GTKPHVIILNKADL------ 63
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ + T K QK L T M H T +
Sbjct: 64 --------------ADPVLT-------KAWQKKLQTNGKFVLAMDSLHNTNM-------- 94
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV--GVPN 178
+I+ ++ + +K K + N T+ + G+PN
Sbjct: 95 -------QGLIHLIKKAASEKTK----------------KLEEKGAVNPTIRIAFAGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
GKS+IIN L ++ + VG K GVT+ Q + I ILDTPGI P+ D+
Sbjct: 132 CGKSTIINRLVGRNVAE-----VGNKPGVTKG---QTWLKTSTNIQILDTPGILWPKFDD 183
Query: 239 LECGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSD-DIVM 292
G +LAA ++D + ++A + + +YL + +++ SD D+++
Sbjct: 184 QAVGYKLAAFGAIKDTVFHADDVALFTIKLLRQYYLAELVKFARSTKEQIEQISDTDLLL 243
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
L ++ M D + ++ RKG G + LDR
Sbjct: 244 AL-----------------TDIYGMRDDYDRFSLYMLQRLRKGKIGKITLDR 278
>gi|225572003|ref|ZP_03780867.1| hypothetical protein RUMHYD_00297 [Blautia hydrogenotrophica DSM
10507]
gi|225040536|gb|EEG50782.1| ribosome biogenesis GTP-binding protein YlqF [Blautia
hydrogenotrophica DSM 10507]
Length = 280
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 138 HMKKGKAVPILPTLQHIS--DNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHM 193
+ + G V + L ++ + + R R + N V MVVG+PNVGKS+ IN
Sbjct: 86 NARSGAGVKAINGLIQVACKEKIERDRRRGIKNRPVRAMVVGIPNVGKSTFINTF----- 140
Query: 194 KKGKA-VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQ 252
GKA G K GVT+ +++++ + +LDTPGI P+ ++ E G+RLA +++
Sbjct: 141 -AGKACTKTGNKPGVTKG-KQWIRLNKN--VELLDTPGILWPKFEDQEVGVRLAVIGSIK 196
Query: 253 DHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSS 312
D ++ ++ ++ YL + + L+E D V +L + A + R ++
Sbjct: 197 DDILNLDELSLSLIHYLREAYPGVLAERYQLEEKGSD-VEVLEQVAKNRNCLLRGQEL-- 253
Query: 313 NSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
D + A I ++ FR G G + L+
Sbjct: 254 -------DYSKAAGILLDEFRSGKIGRITLE 277
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ +K +D+++E+ D+R+P + RN + + +N + +++LNK DL + K
Sbjct: 10 MTKAKRMMQEDIKLIDLIVELVDARIPLSSRNPDIDELGKN-KSRLILLNKSDLADEKGN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV-- 117
S E + + H+ ++ N R + GV+ I +Q + + R R + N V
Sbjct: 69 SQWEAYFKAQGFHVHKI---NAR--SGAGVKAINGLIQVACKEKIERDRRRGIKNRPVRA 123
Query: 118 MVVGVPNVGKSSIINAL 134
MVVG+PNVGKS+ IN
Sbjct: 124 MVVGIPNVGKSTFINTF 140
>gi|423070343|ref|ZP_17059119.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
gi|355365704|gb|EHG13424.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
Length = 283
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+PF+ +N +L + V + +P +L+LNK DL ++
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGD-KPKLLILNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H++ RY + T
Sbjct: 67 --------------------------------------HLTKEWQRYFENQDIKTLA--- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 86 ----------INSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ +
Sbjct: 134 KSTLMNRL------AGKKIAVTGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEEA 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++LA ++D ++ + + + Y + F NL + + +I+M +
Sbjct: 185 DIALKLALTGAIKDDVLPMDEVTIFGINYFKEHYPTELQERFKSMNLKDEAPEIIMDMT- 243
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + ++FI+ R G G LD
Sbjct: 244 ---QKLGFRDNYD------RFY-------QLFIKEIRDGKVGRYTLD 274
>gi|410862479|ref|YP_006977713.1| ribosomal biogenesis GTPase [Alteromonas macleodii AltDE1]
gi|410819741|gb|AFV86358.1| ribosomal biogenesis GTPase [Alteromonas macleodii AltDE1]
Length = 332
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK+I++ L VDI+IEV D+R+P++ N + + ++ +P + +LNK DL + +
Sbjct: 10 MHKALKEIKESLNQVDILIEVLDARIPYSSENPEIAK-IRGDKPCIKILNKYDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+L +E + KE+ + I T+ NP N K L + ++ Y + M+
Sbjct: 69 ALWQESLEKERG--VKTITTSSDNPGNSK-------QLMQLIRSICSYKEGQPKAIKAMI 119
Query: 120 VGVPNVGKSSIINAL 134
G+PNVGKS++IN L
Sbjct: 120 TGIPNVGKSTLINIL 134
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 29/224 (12%)
Query: 131 INALRSSHMKKGKAVPILPT----------LQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ AL ++K + V + T L + ++ Y + M+ G+PNVG
Sbjct: 67 LTALWQESLEKERGVKTITTSSDNPGNSKQLMQLIRSICSYKEGQPKAIKAMITGIPNVG 126
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + K G + VT+S Q +I+ I + DTPG+ P+++N
Sbjct: 127 KSTLINILADRIIAK-----TGNEPAVTKS---QQRINLGSGIILFDTPGVLWPKLENPN 178
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKAAI 299
RLA+ +++ + ++ + YL + + F LDE PS +I L A A
Sbjct: 179 SIYRLASSGAVKNTAMEYDDVGFFAADYLIKAYPEVMKERFKLDELPSTEIEFLEAAAKT 238
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R S V + ++ I ++ + G G V L+
Sbjct: 239 ------RGAIASGGRVNLH----KICEILLKELQSGKLGRVTLE 272
>gi|218283551|ref|ZP_03489541.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
gi|218215819|gb|EEC89357.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
Length = 281
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 65/269 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +E++LK VD VIE+ D+RMP +N PM+ LI +K
Sbjct: 11 MTKAKRQMEENLKKVDFVIEIRDARMPDASKN-----------PML-----DQLIQNKPR 54
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ K K +++ N QK+L L I +N ++ ++
Sbjct: 55 LILLSKKDKADKELTKQWVNALETEN----QKVL-ALDFIHENFSK-----------QLI 98
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++I + MK R R MV G+PNVG
Sbjct: 99 KASNELCINLIEKQKRRGMK------------------PRALRA-------MVCGIPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN K KA G + GVT+S + +K+ + + +LDTPG+ P+ ++ +
Sbjct: 134 KSTFINTF-----AKRKAAQTGDRPGVTKS-LQWIKVGQT--LELLDTPGVLWPKFEDQQ 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYL 269
G++LA +++D +V ++A + YL
Sbjct: 186 VGLKLALLGSIKDQVVNMDDLALFACEYL 214
>gi|191638394|ref|YP_001987560.1| GTP-binding protein [Lactobacillus casei BL23]
gi|385820096|ref|YP_005856483.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|385823296|ref|YP_005859638.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|409997259|ref|YP_006751660.1| ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|418007989|ref|ZP_12647860.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
gi|190712696|emb|CAQ66702.1| GTP-binding protein [Lactobacillus casei BL23]
gi|327382423|gb|AEA53899.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|327385623|gb|AEA57097.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|406358271|emb|CCK22541.1| Ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|410547748|gb|EKQ21974.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
Length = 286
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+V+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDLVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L K+ + F A+D + + G++ R +E
Sbjct: 244 LTKS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|253699930|ref|YP_003021119.1| GTP-binding protein HSR1-related [Geobacter sp. M21]
gi|251774780|gb|ACT17361.1| GTP-binding protein HSR1-related protein [Geobacter sp. M21]
Length = 299
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I + ++ +D++IEV D+R+PF+ NHLL+Q +N +P + VLNK DL +
Sbjct: 10 MSKALEQISELVRKIDVIIEVLDARLPFSSSNHLLEQVRRN-KPCIKVLNKNDLADPAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +K S + + P K + K+ ++ + N Y MVV
Sbjct: 69 RAWVQHFQK-ASGVRALPLVAKNIPEVKNLVKL---IKQVCPN----RGNPGYPIRTMVV 120
Query: 121 GVPNVGKSSIINALRSSHMKK 141
G+PNVGKS++IN L + K
Sbjct: 121 GIPNVGKSTLINTLAGKSIAK 141
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
Y MVVG+PNVGKS++IN L + K VG K VT + +I + I +
Sbjct: 113 YPIRTMVVGIPNVGKSTLINTLAGKSIAK-----VGDKPAVT---LKPQQIDLRNGILLF 164
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
DTPG+ P +D+ RLAA + + + N+ + Y+ R
Sbjct: 165 DTPGLLWPVMDDQGGAYRLAASGAIGANALDYTNVGVFAAAYMMR 209
>gi|392389035|ref|YP_005907444.1| GTP-binding protein [Mycoplasma leachii 99/014/6]
gi|339276680|emb|CBV67259.1| Conserved hypothetical GTP-binding protein [Mycoplasma leachii
99/014/6]
Length = 305
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 157/357 (43%), Gaps = 93/357 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 1 MNKTLKDIEARIEIVDVVVEVIDSRAPYSSKNATFKKLLKD-KPIVYIFSKADIADSKVT 59
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ ++ E S + + Y+R T++ N +
Sbjct: 60 QQWVDYYIKNENSKV-----------------------------IVLYNRHTDIVNELI- 89
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L +K KA I TL +V+G+PN
Sbjct: 90 ----------NVINELTIKKREKDKAKGIKNTL-----------------INALVIGIPN 122
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 123 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 174
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 175 ETVAVNICAINSIKDNVFPKERVAAKLMSYI--YNNYDDIIEKYYKINLRLQKPISVIDS 232
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHFRKGSFGSVMLDR 344
+ I+KKW+ + D ++ RI F++ KG G + ++
Sbjct: 233 YKIFETIGIEKKWY------------VTEDILDMERILSSFLKDLDKGKLGKISFEK 277
>gi|340749990|ref|ZP_08686837.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
mortiferum ATCC 9817]
gi|229419633|gb|EEO34680.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
mortiferum ATCC 9817]
Length = 287
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 83/344 (24%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
I+ +++ +DIV+EV D+R+P + +N + +N + V+VLNK DL++ K E +K
Sbjct: 20 IKDNMQLIDIVLEVVDARIPLSSKNPDITVFAKN-KKRVIVLNKSDLVD-KKELAYWKKY 77
Query: 68 RKEQSHISEVIFTNCRNP-NCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
KE + EV+ + N KG+ I+ + NT +MVVG+PNVG
Sbjct: 78 FKENNFADEVLEISAETGFNIKGLYSIIDKVSAEKKEKMMAKGLRKVNTRLMVVGIPNVG 137
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
KS +IN + VGK+S
Sbjct: 138 KSRLINRI--------------------------------------------VGKNS--- 150
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
VG K G T+ V+I E + +LD PGI P+ ++ E G LA
Sbjct: 151 ------------AGVGNKPGFTKG-KQWVRIKEG--LELLDMPGILWPKFESEEVGQNLA 195
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN-----LDEPSDDIV-MLLAKAAIK 300
++D ++ IA ++ + R Y D LDE +I+ +L K A++
Sbjct: 196 ITGAIRDEILPIEEIAGILISKMIR---YEMWDVLKERYKLLDEDKSEIMGEILEKIALR 252
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
K F + + + + A + +R G LDR
Sbjct: 253 CKMFNKGESL---------NVQQAAYTVLRDYRGCRIGKFGLDR 287
>gi|227432241|ref|ZP_03914237.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352014|gb|EEJ42244.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 284
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 101/355 (28%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + ++LK VD+V E+ DSR+P + RN + + + N +P +L++ K DL +
Sbjct: 12 MAKAFRLMRENLKLVDVVFELVDSRIPKSSRNPEVDKLIGN-KPRLLIMTKADLADP--- 67
Query: 61 SLIEEKVRKEQSHISE----VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTT 116
++ R + H V+ + R+P P L +T+ R V
Sbjct: 68 ----DQTRAWKKHFEAQGYTVLVLDTRDPRT-------PQL------VTKAARRAV---- 106
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
A +++ + KG I D R M+ GV
Sbjct: 107 ---------------EAKKAAQLAKG-----------IQDQPIR----------AMISGV 130
Query: 177 PNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236
PNVGKS+++N L ++ P + GVT+ + V + + +LD+PG+ P+
Sbjct: 131 PNVGKSTLLNRLVMKNV-----APTADRPGVTKKI---VWLKTPTKLELLDSPGVLWPKF 182
Query: 237 DNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYR---YVDFFNL-----DEPSD 288
++ GM+LA ++D + + + A LF +N YR +D ++L D+ +
Sbjct: 183 EDQNIGMKLALTGAVKDTIFAKDDAA---LFLINCFREYRPEAIIDRYHLHDNIFDQENV 239
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
D+++ + K FK +D +S + + RK G+ LD
Sbjct: 240 DVLL----SITSKLGFKDDYDKASERI-------------LNDLRKNKLGAFTLD 277
>gi|266625486|ref|ZP_06118421.1| ribosome biogenesis GTP-binding protein YlqF, partial [Clostridium
hathewayi DSM 13479]
gi|288862612|gb|EFC94910.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
DSM 13479]
Length = 282
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 152 QHISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
+ + + R R + N V MVVG+PNVGKS+ IN+ K G K GVT+
Sbjct: 87 EACKEKIERDRRRGILNRPVRAMVVGIPNVGKSTFINSFAGKACAK-----TGNKPGVTK 141
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL 269
+++++ + +LDTPGI P+ ++ G+RLA ++ D ++ + +A ++ +L
Sbjct: 142 G-NQWIRLNKS--LELLDTPGILWPKFEDQTVGIRLALIGSINDEILNKDELALELIRFL 198
Query: 270 NRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFI 329
+ D + D + D V LL + A + + ++ D + +R+ I
Sbjct: 199 QKQYPNVLEDKYQAD--ASDAVELLNQIAKARACLSKGGEL---------DLAKASRLLI 247
Query: 330 EHFRKGSFGSVMLD 343
+ FR G G + L+
Sbjct: 248 DDFRNGKLGKITLE 261
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
+++ +K +D++IE+ D+R+P + RN + + + +++LNK DL + + +L
Sbjct: 2 MKEDIKLIDLIIELVDARVPLSSRNPDID-DIGAGKARLILLNKSDLADERC-NLKWAAY 59
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTV--MVVGVPN 124
+E+ + V+ N R+ G++ I +Q + + R R + N V MVVG+PN
Sbjct: 60 FQEKGYF--VVKVNSRSG--AGLKAINGVVQEACKEKIERDRRRGILNRPVRAMVVGIPN 115
Query: 125 VGKSSIINALRSSHMKK 141
VGKS+ IN+ K
Sbjct: 116 VGKSTFINSFAGKACAK 132
>gi|83319346|ref|YP_424514.1| GTPase family protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283232|gb|ABC01164.1| GTPase family protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 316
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 93/357 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 12 MNKTLKDIEARIEIVDVVVEVIDSRAPYSSKNATFKKLLKD-KPIVYIFSKADIADSKVT 70
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ ++ E S + + Y+R T+V N +
Sbjct: 71 QQWVDYYIKNENSKV-----------------------------IVLYNRHTDVVNELI- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L +K KA I TL +V+G+PN
Sbjct: 101 ----------NVINELTIKKREKDKAKGIKNTL-----------------INALVIGIPN 133
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 134 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 185
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 186 ETVAVNICAINSIKDNVFPKERVAAKLMSYV--YNNYDDIIEKYYKINLRLQKPISVIDS 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARI---FIEHFRKGSFGSVMLDR 344
+ I+KKW+ + D ++ RI F++ KG G + ++
Sbjct: 244 YKIFETIGIEKKWY------------ITEDILDMERILSSFLKDLDKGKLGKISFEK 288
>gi|86146683|ref|ZP_01065004.1| putative GTPase YlqF [Vibrio sp. MED222]
gi|85835530|gb|EAQ53667.1| putative GTPase YlqF [Vibrio sp. MED222]
Length = 311
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR ++ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 107 HREQMGKNIRTMIMGIPNVGKSTIINCL------AGRTIAVTGNQPAVTRR---QQRINL 157
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 158 QNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPNLLQE 217
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ ++E P DI ++ +A +K+ RA D + + I + R G+ G
Sbjct: 218 RYQIEELPESDIELM--EAIGRKRGALRAGG--------HIDIHKCSEILLHELRNGTLG 267
Query: 339 SVMLD 343
V L+
Sbjct: 268 KVTLE 272
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 15/137 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P V VLNKRDL + +
Sbjct: 10 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SSLRGDKPCVKVLNKRDLADPELT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCR---NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
E KEQ + I T+ + N + V+K+ P + + N+ RT
Sbjct: 69 ERWIEHFEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQMGKNI----RT------- 117
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IIN L
Sbjct: 118 MIMGIPNVGKSTIINCL 134
>gi|255994296|ref|ZP_05427431.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
gi|255993009|gb|EEU03098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
Length = 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+MVVG+PNVGKSS IN M K ++ G K GVTR Q+ I + ++DTPG
Sbjct: 120 LMVVGIPNVGKSSFIN-----RMTKKRSTVTGDKPGVTRG--KQI-IRFPNNVQLMDTPG 171
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYL--NRTGNYRYVDFFNLDEPSD 288
I P ++ +RLA C ++D ++ +A ++ YL + TG + L +D
Sbjct: 172 ILWPNFEDELVALRLAFCGCIKDEILDTSTLAVRLIDYLIKDETGAKGIEKRYKLPFVTD 231
Query: 289 DIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
D V ++ A R F + + + D R ++ FRKG G + L+
Sbjct: 232 DAVSVMDDIA-----RARGFLIRNGEI----DYERTGRTILDEFRKGLLGRITLE 277
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + I + LK +D+VIE+ D+R+P + +N +L ++ R +++LNK DL
Sbjct: 11 MKKATDTIREDLKVIDVVIEILDARVPLSSKNPVLDSLLRKHR-RIIILNKYDLAGDSGN 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + + + + + K +++ + ++ D +++ +MVV
Sbjct: 70 EKWKGHFKTQGA--DAFLVNSITGFGIKELERHIMKIKSELDEKNSFNKP----MRLMVV 123
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKSS IN +
Sbjct: 124 GIPNVGKSSFINRM 137
>gi|295396863|ref|ZP_06806991.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
gi|294974889|gb|EFG50588.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
Length = 291
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 137/354 (38%), Gaps = 97/354 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+++ L VDIV+E+ D+R+P N +L + ++N R M+ VLNK+DL + +
Sbjct: 11 MAKAKKEVQSQLNAVDIVLEIRDARIPTASMNPMLDEIIKNKRHMI-VLNKQDLADPQQ- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGV--QKILPTLQHISD---NMTRYHRTEVYNT 115
+E V+ I + + + Q + Q I D N H++
Sbjct: 69 --TKEWVKALSGENKLAIALDSKKLGDMKIFRQALKDFTQDIQDKWRNKGILHKS----I 122
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
VMV+G+PNVGKS+ IN T+ + +V N
Sbjct: 123 RVMVIGIPNVGKSTFIN------------------------QFTKQKKAQVGN------- 151
Query: 176 VPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
K GVT+ +KI + +LDTPGI P+
Sbjct: 152 ----------------------------KPGVTKG-QQWIKIDKD--FELLDTPGILWPK 180
Query: 236 IDNLECGMRLAACATLQDHLVGEINIADYIL-----FYLNRTGNYRYVDFFNLDEPSDDI 290
++ E +LA ++D + ++A + L +Y + N+ + ++ P D+
Sbjct: 181 FEDQEVADKLALTGGIKDTHFYKDDVALFALEFFLHYYPDAISNHYPIKAEDVHPPYPDL 240
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+M L K + M D + I +R G G + LDR
Sbjct: 241 LMALTK-----------------RMGMLEDYDRASDKIIRDYRDGKLGRMTLDR 277
>gi|192362386|ref|YP_001981932.1| ribosomal biogenesis GTPase [Cellvibrio japonicus Ueda107]
gi|190688551|gb|ACE86229.1| predicted GTPase [Cellvibrio japonicus Ueda107]
Length = 312
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 37/222 (16%)
Query: 137 SHMKKGKAVPILPTLQH----------ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
H+++ + V LP Q + ++ + EV M++G+PNVGKS+IIN
Sbjct: 74 EHLEQERGVKALPVSQQRPEQIRNLLQLVTSLVSERQREVRPARAMIMGIPNVGKSTIIN 133
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
L + K G +AGVT++ Q KI + I + DTPG P++ CG RLA
Sbjct: 134 TLAGRVIAK-----TGNEAGVTKA---QQKIKLENGILLTDTPGFLWPKLSPPSCGYRLA 185
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FNLDE-PSDDIVMLLAKAAIKK 301
++D + +IA Y YL + Y D + L E P D+ +L AI +
Sbjct: 186 ITGAIKDTVFDYADIALYAADYL----KWAYPDALKQRYQLKELPETDLEIL---DAIGR 238
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+R V + +VA + I R G+ G + +
Sbjct: 239 ---QRGCTRKGGGV----EIQKVAALLITELRAGTLGPISWE 273
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + KDI + + +VD++IEV D+R+PF+ N L+ +++ +P++ +LNK DL +
Sbjct: 11 MHKARKDIAEVMPHVDVIIEVIDARLPFSSENPLV-PALRGEKPLIKLLNKADLADPATT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E + EQ + + + + P ++I LQ ++ ++ R EV M++
Sbjct: 70 QRWVEHL--EQERGVKALPVSQQRP-----EQIRNLLQLVTSLVSERQR-EVRPARAMIM 121
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN L
Sbjct: 122 GIPNVGKSTIINTL 135
>gi|358060975|ref|ZP_09147663.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
gi|357256550|gb|EHJ06910.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
Length = 294
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 83/348 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN PM+ +
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRN-----------PMI-------------D 45
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+I++K R V+ N ++ M+ E + +
Sbjct: 46 DVIKQKPR--------VVILNKKD-------------------MSNLKEMEKWKDFFVEK 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G V ++A ++K+ +A I T + + + M+VG+PNVG
Sbjct: 79 GYYPVA----VDAKHGKNLKQVEAAAIKATKEKFEREKAKGLKPRA--IRAMIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + + G K GVT+ Q I L+ +LDTPGI P+ ++ E
Sbjct: 133 KSTLINKLANRTIAQ-----TGNKPGVTKQ---QQWIKVGKLLQLLDTPGILWPKFEDEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G +L+ ++D +V +A Y L +L R + +D +D +
Sbjct: 185 VGKKLSLTGAIKDSIVHLDEVAIYGLNFLIAHDLERLQQHYKIDVNADAETL-------- 236
Query: 301 KKWF-----KRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+WF KR N V D V + I R G+ D
Sbjct: 237 -EWFDAIGRKRGLLRKGNEV----DYEAVIELLINDMRNAKIGTYCFD 279
>gi|218676387|ref|YP_002395206.1| ribosomal biogenesis GTPase [Vibrio splendidus LGP32]
gi|218324655|emb|CAV26234.1| putative GTPase [Vibrio splendidus LGP32]
Length = 343
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
Query: 162 HRTEV-YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISE 219
HR ++ N M++G+PNVGKS+IIN L G+ + V G + VTR Q +I+
Sbjct: 139 HREQMGKNIRTMIMGIPNVGKSTIINCL------AGRTIAVTGNQPAVTRR---QQRINL 189
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
+ + + DTPGI P+++N G RLAA ++D + +A Y + YL + +
Sbjct: 190 QNGVILSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKQYPNLLQE 249
Query: 280 FFNLDE-PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFG 338
+ ++E P DI ++ +A +K+ RA D + + I + R G+ G
Sbjct: 250 RYQIEELPESDIELM--EAIGRKRGALRAGG--------HIDIHKCSEILLHELRNGTLG 299
Query: 339 SVMLD 343
V L+
Sbjct: 300 KVTLE 304
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 15/137 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P V VLNKRDL + +
Sbjct: 42 MHKARKEIEEVIPQVDVIIEVLDARIPFSSENPMI-SSLRGDKPCVKVLNKRDLADPELT 100
Query: 61 SLIEEKVRKEQSHISEVIFTNCR---NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
E KEQ + I T+ + N + V+K+ P + + N+ RT
Sbjct: 101 ERWIEHFEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQMGKNI----RT------- 149
Query: 118 MVVGVPNVGKSSIINAL 134
M++G+PNVGKS+IIN L
Sbjct: 150 MIMGIPNVGKSTIINCL 166
>gi|54302828|ref|YP_132821.1| ribosomal biogenesis GTPase [Photobacterium profundum SS9]
gi|46916252|emb|CAG23021.1| putative GTPase [Photobacterium profundum SS9]
Length = 331
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 30/184 (16%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN + G+A+ V G + VTR Q +I+ + I +
Sbjct: 133 NIRTMIMGIPNVGKSTIINVI------AGRAIAVTGNQPAVTRQ---QQRINLQNGIVLS 183
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FN 282
DTPGI P+++N G RLAA ++D + ++A + + YL Y D ++
Sbjct: 184 DTPGILWPKVENPHSGFRLAATGAVKDTAMDYTDVAFFTIEYLAAA----YPDLIKARYD 239
Query: 283 LDE--PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSV 340
LD+ P DI L+ + K+ + + D + + I I R G+ G +
Sbjct: 240 LDDELPETDI-ELMEEIGRKRGCLRPGGRI---------DIHKASEILINELRNGTLGKI 289
Query: 341 MLDR 344
++R
Sbjct: 290 TMER 293
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P+V VLNKRDL + +
Sbjct: 29 MHKARKEIEEAIPKVDVIIEVLDARIPFSSENPMI-SSLRGEKPVVKVLNKRDLADPEMT 87
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + KEQ + I T N V +I+ + ++ + N M++
Sbjct: 88 EMWIAHLEKEQGVKAIAITTE----NIAEVNQIMELCRKLAPGREAMGK----NIRTMIM 139
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN +
Sbjct: 140 GIPNVGKSTIINVI 153
>gi|187778965|ref|ZP_02995438.1| hypothetical protein CLOSPO_02560 [Clostridium sporogenes ATCC
15579]
gi|187772590|gb|EDU36392.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
sporogenes ATCC 15579]
Length = 299
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 146/351 (41%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPEIEDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWINSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ M
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRAM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVT+ S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTK---SKQWIKTKMDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQDKYPERLMKRYKLEALEENPLD 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNIG-----RKRGALISKGEI----DYNRISVILLDEFRAGKLGAISLE 278
>gi|407847698|gb|EKG03324.1| GTP-binding protein, putative [Trypanosoma cruzi]
Length = 452
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 148/356 (41%), Gaps = 82/356 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M L+ + + +++ D V+E+ D+R+PF+ N L++ + RP ++V NK ++ N
Sbjct: 58 MQLALRTLTEKVRDADFVLEIRDARLPFSTENPNLRKIISG-RPRLIVFNKAEMSNEDCN 116
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ K + +FT + + + + +Q ++ + +V +VV
Sbjct: 117 RTIQQYYEKTGNF---ALFTCAK----RSWRDTVEAVQRFVTHILPAQQFKVTAHVGLVV 169
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS++IN+LR +H + +HR +
Sbjct: 170 GMPNVGKSTLINSLRLAHEYQ-------------------FHREDFRRP----------- 199
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+ +AV + P G T+ V V + P I + D+PG++LP + E
Sbjct: 200 -------------RTPEAVSITP--GTTKGV-KLVPVCRDPNIVLYDSPGLTLPGCLSKE 243
Query: 241 CGMRLAACATL--QDHLVGEINIADYILFYLNRTG-NYRYVDFFNLDEP----SDDIVML 293
++LAAC + D + +A YI L G + + +L D I M+
Sbjct: 244 ASLKLAACGIIPTNDITLPRSIVARYIYDVLTAAGISEHMAECLHLPRAPISFDDCIAMI 303
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV----ARIFIEH-FRKGSFGSVMLDR 344
++ + D G + A++F+ H F+ G+ G + LDR
Sbjct: 304 CERSGTSGQ----------------TDLGNIDPVRAQMFLIHDFQMGNMGRITLDR 343
>gi|312793163|ref|YP_004026086.1| ribosome biogenesis gtp-binding protein ylqf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180303|gb|ADQ40473.1| ribosome biogenesis GTP-binding protein YlqF [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 282
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 77/344 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + ++I + K +D+ + + D+R P + RN L+ +++ +P + VLNK DL + K +
Sbjct: 10 MQKAKREILELNKYIDLYLILLDARAPLSSRNEQLESLIKD-KPKIYVLNKSDLADEKKN 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
E + K +E + ++ V + + N K + K I++N+ + E
Sbjct: 69 EEFV--KYFQENNQVA-VCIDSLKGTNVKNILK-------IAENLLKDKIEEAKQK---- 114
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+ II R+ V+G+PNV
Sbjct: 115 ------GRKKII----------------------------RFG----------VLGIPNV 130
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN + +S K G K GVTR+ +KI++ +LDTPGI +P++++
Sbjct: 131 GKSTLINKITNSAKAK-----TGDKPGVTRA-KQWIKIND--YFEMLDTPGILVPKLEDD 182
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
++L A ++++ L + +A + + + +Y N + S D L + +
Sbjct: 183 TVAIKLCAIGSIKEELFDKELVAKKTIEMIKK----KYCQLLN-QKYSIDFSTLSEEEYL 237
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ KR + + DT + A +F++ RKG G + LD
Sbjct: 238 TEIGKKRGCVLKEGRI----DTLKAATVFLDDLRKGKIGRITLD 277
>gi|254565173|ref|XP_002489697.1| GTPase that associates with nuclear 60S pre-ribosomes, required for
export of 60S ribosomal subunits [Komagataella pastoris
GS115]
gi|238029493|emb|CAY67416.1| GTPase that associates with nuclear 60S pre-ribosomes, required for
export of 60S ribosomal subunits [Komagataella pastoris
GS115]
gi|328350116|emb|CCA36516.1| GTP-binding protein engA [Komagataella pastoris CBS 7435]
Length = 500
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG PNVGKSSIINAL S H GKA PVG +AGVT S M +VK+ K + ILD+PG
Sbjct: 284 VGVVGYPNVGKSSIINALTSRHGGNGKACPVGNQAGVTTS-MREVKVDNK--LKILDSPG 340
Query: 231 ISLP 234
I P
Sbjct: 341 IVFP 344
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 16 DIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQS 72
D+++ V D+R P R+ +++++ Q R ++ VLNK DL+ +++++ + QS
Sbjct: 180 DVILYVLDARDPEGTRSKKIEEAILQSQGKR-LIFVLNKIDLV---PDNVLKMWLDFLQS 235
Query: 73 HISEVIF----TNCRNPNCKGVQKILPTLQHISDNMTRY-HRTEVYNTTVM-VVGVPNVG 126
V N K Q + T + + +++ Y H++ + ++ VVG PNVG
Sbjct: 236 SFPTVPLKANGAASTTFNKKMTQAV--TSKQLLESLKSYAHKSNLKRAIIVGVVGYPNVG 293
Query: 127 KSSIINALRSSHMKKGKAVPI 147
KSSIINAL S H GKA P+
Sbjct: 294 KSSIINALTSRHGGNGKACPV 314
>gi|392428770|ref|YP_006469781.1| GTP-binding protein [Streptococcus intermedius JTH08]
gi|391757916|dbj|BAM23533.1| GTP-binding protein [Streptococcus intermedius JTH08]
Length = 295
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+PF+ +N +L + V + +P +LVLNK DL ++
Sbjct: 23 MSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGD-KPKLLVLNKADLADA--- 78
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H++ RY +
Sbjct: 79 --------------------------------------HLTKEWRRYFENQ--------- 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 92 GI----KTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 145
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 146 KSTLMNRL------AGKKIAVTGNKPGVTK---GQQWLKSNKDLEILDTPGILWPKFEDE 196
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++L+ ++D ++ + + + Y + F NL + + +I+M +
Sbjct: 197 KVALKLSLTGAIKDDVLPMDEVTIFGINYFKEHYPTELQERFKSMNLKDEAPEIIMDMT- 255
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + ++FI+ R G G LD
Sbjct: 256 ---QKLGFRDNYD------RFY-------QLFIKEIRDGKVGRYTLD 286
>gi|217961258|ref|YP_002339826.1| ribosomal biogenesis GTPase [Bacillus cereus AH187]
gi|229140481|ref|ZP_04269036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|229157414|ref|ZP_04285492.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|229197948|ref|ZP_04324663.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|375285761|ref|YP_005106200.1| GTPase family protein [Bacillus cereus NC7401]
gi|384181651|ref|YP_005567413.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|423353540|ref|ZP_17331167.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|423374365|ref|ZP_17351703.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|423567267|ref|ZP_17543514.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|423574556|ref|ZP_17550675.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|423604535|ref|ZP_17580428.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
gi|217065992|gb|ACJ80242.1| GTPase family protein [Bacillus cereus AH187]
gi|228585527|gb|EEK43630.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|228626141|gb|EEK82890.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|228643042|gb|EEK99318.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|324327735|gb|ADY22995.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354288|dbj|BAL19460.1| GTPase family protein [Bacillus cereus NC7401]
gi|401089353|gb|EJP97524.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|401094277|gb|EJQ02359.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|401212081|gb|EJR18827.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|401214355|gb|EJR21085.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|401245155|gb|EJR51513.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
Length = 296
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|71414870|ref|XP_809521.1| GTP-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70873917|gb|EAN87670.1| GTP-binding protein, putative [Trypanosoma cruzi]
Length = 452
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 149/356 (41%), Gaps = 82/356 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M L+ + + +++ D V+E+ D+R+PF+ N L++ + RP ++V NK ++ N
Sbjct: 58 MQLALRTLTEKVRDADFVLEIRDARLPFSTENPNLRKIISG-RPRLIVFNKAEMSNEDCN 116
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I++ K + +FT+ + + + + +Q ++ + +V +VV
Sbjct: 117 RNIQQYYEKTGNF---ALFTSAK----RSWRDTVEAVQRFVTHILPAQQFKVTAHVGLVV 169
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+PNVGKS++IN+LR +H + +HR +
Sbjct: 170 GMPNVGKSTLINSLRLAHEYQ-------------------FHREDFRRP----------- 199
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
+ +AV + P G T+ V V + P I + D+PG++LP + E
Sbjct: 200 -------------RTPEAVSITP--GTTKGV-KLVPVCRDPNIVLYDSPGLTLPGCLSKE 243
Query: 241 CGMRLAACATL--QDHLVGEINIADYILFYLNRTG-NYRYVDFFNLDEP----SDDIVML 293
++LAAC + D + +A YI L G + + +L D I M+
Sbjct: 244 ASLKLAACGIIPTNDITLPRSIVARYIYDVLTAAGISEHMAECLHLPRAPISFDDCIAMI 303
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEV----ARIFIEH-FRKGSFGSVMLDR 344
++ + D G + A++F+ H F+ G+ G + LDR
Sbjct: 304 CERSGTSGQ----------------TDLGNIDPVRAQMFLIHDFQMGNMGRITLDR 343
>gi|42560964|ref|NP_975415.1| GTP-binding protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|313665433|ref|YP_004047304.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma leachii
PG50]
gi|42492461|emb|CAE77057.1| Conserved hypothetical GTP-binding protein [Mycoplasma mycoides
subsp. mycoides SC str. PG1]
gi|301321088|gb|ADK69731.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
gi|312949700|gb|ADR24296.1| ribosome biogenesis GTP-binding protein YlqF [Mycoplasma leachii
PG50]
Length = 316
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 87/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + LKDIE ++ VD+V+EV DSR P++ +N ++ +++ +P+V + +K D+ +SK
Sbjct: 12 MNKTLKDIEARIEIVDVVVEVIDSRAPYSSKNATFKKLLKD-KPIVYIFSKADIADSKVT 70
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHR-TEVYNTTVM 118
+ ++ ++ E S + + Y+R T++ N +
Sbjct: 71 QQWVDYYIKNENSKV-----------------------------IVLYNRHTDIVNELI- 100
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
++IN L +K KA I TL +V+G+PN
Sbjct: 101 ----------NVINELTIKKREKDKAKGIKNTL-----------------INALVIGIPN 133
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+ IN + KGK V VG K GVTR + I P I +LDTPG+ ++++
Sbjct: 134 VGKSTFIN-----RVIKGKNVKVGNKPGVTRGIQL---IHLNPFINLLDTPGVLPSKLES 185
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNY-----RYVDF-FNLDEPSD--DI 290
+ + A +++D++ + +A ++ Y+ NY +Y L +P D
Sbjct: 186 ETVAVNICAINSIKDNVFPKERVAAKLMSYI--YNNYDDIIEKYYKINLRLQKPISVIDS 243
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ I+KKW+ V+ + + D + F++ KG G + ++
Sbjct: 244 YKIFETIGIEKKWY-----VTEDIL----DMERILSSFLKDLDKGKLGKISFEK 288
>gi|354565742|ref|ZP_08984916.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
gi|353548615|gb|EHC18060.1| ribosome biogenesis GTP-binding protein YlqF [Fischerella sp.
JSC-11]
Length = 293
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 96/355 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + K++++ LK VD+V+EV D+R+P + + + Q + N + +LVLN+ D+I+ +
Sbjct: 19 IAKAEKNLKEQLKLVDVVLEVRDARIPLSTFHPQIPQWIGN-KKRLLVLNRLDMISEQVR 77
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L + +++ +V FTN +
Sbjct: 78 QLWADWFKRQGE---QVFFTNAQQGQ---------------------------------- 100
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV V K++ + + ++ + + P +V+G PNVG
Sbjct: 101 GVTAVSKATQATGVELNQRRRDRGMLPRPV-------------------RAVVIGFPNVG 141
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L + + A P GVTR + V+ISE + +LD PG+ ++++ E
Sbjct: 142 KSALINRLVGRRVVESAARP-----GVTRQ-LRWVRISED--LELLDAPGVIPAKLEDQE 193
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C +GE Y N+ +VD N + +A +
Sbjct: 194 AGLKLAVCDD-----IGEAA-------YDNQLIAAAFVDLVNE-------LYAIAPDVLP 234
Query: 301 KKWFKRAFDVSSNS------------VRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + +D+ S +R D AR + FRKG G++ L+
Sbjct: 235 ENPLRSRYDLDPTSSTGESYLHNLSELRHKGDVERTARQILTDFRKGFLGTLPLE 289
>gi|134299894|ref|YP_001113390.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
gi|134052594|gb|ABO50565.1| Ras superfamily GTP-binding protein YlqF [Desulfotomaculum reducens
MI-1]
Length = 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 17/172 (9%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
MV+G+PNVGKS+ IN L KA G GVT+ Q I + + +LDTPGI
Sbjct: 126 MVLGIPNVGKSTFINRLVGR-----KATKTGDTPGVTKG---QQWIRTQGSLELLDTPGI 177
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
P+ ++ E G +LA +++ + ++ +L +L + + + ++E + +
Sbjct: 178 LWPKFEDPEVGYKLAVTGAIKEQVFDIYEVSLKLLQWLAEYNPEKLKERYRMNELNPEAT 237
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LL + KR VS V D +VA++ ++ FR+G G LD
Sbjct: 238 KLLWDIGV-----KRGLLVSGGLV----DESKVAQLILKEFREGLLGRYTLD 280
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++ LK VD+ E+ D+R+P + N ++ Q + +P V++LNK DL +
Sbjct: 12 MAKAKRQVQDALKLVDVAFELLDARIPVSSSNPMIDQ-ILGQKPRVIILNKSDLADP--- 67
Query: 61 SLIEEKVRK-EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV-- 117
S+ ++ R ++ +I + + K V ++ L +++ M + +
Sbjct: 68 SITKQWQRALDRPYIKAIAVDTIKGEGLKEVPRVASML--VAEQMAKLAAKGRRPRAIRC 125
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVP 146
MV+G+PNVGKS+ IN L K P
Sbjct: 126 MVLGIPNVGKSTFINRLVGRKATKTGDTP 154
>gi|343525032|ref|ZP_08761988.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343396904|gb|EGV09440.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 283
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+P + +N +L + V + +P +L+LNK DL +S
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLLILNKADLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ RY ++
Sbjct: 67 --------------------------------------DVTKEWRRYFESQ--------- 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRL------AGKKIAVTGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++LA ++D L+ +A + + Y + F +L E + +I+M +
Sbjct: 185 KVALKLALTGAIKDDLLPMDEVAIFGINYFKEHYPKELRERFKQIDLKEEAPEIIMDMT- 243
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + ++FI+ R G G LD
Sbjct: 244 ---QKLGFRDNYD------RFY-------QLFIKEIRDGKVGRYTLD 274
>gi|332799158|ref|YP_004460657.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
gi|332696893|gb|AEE91350.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 147/345 (42%), Gaps = 87/345 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKH 59
M + K I+ +LK VD+V+E+ D+R P + HL S+ + ++++NK DL + K
Sbjct: 10 MAKTKKMIKDNLKLVDVVLELTDARAPLS--THLPDINSLIGNKNSIMIMNKADLADKK- 66
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
I+D +Y + +
Sbjct: 67 ----------------------------------------ITDMWLKYFKKQ-------- 78
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+ K+ +N+L+ S +K L ++ N+ + +T + +T M++G+PNV
Sbjct: 79 -GI----KAIAVNSLKKSELK---------NLYNLLGNVKK--KTVLRSTRCMIIGIPNV 122
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKSS+IN + + +P GVTR+ M +K+ + + +LDTPGI P+ ++
Sbjct: 123 GKSSLINQMAGRKSARTADIP-----GVTRNKM-WLKVDDN--LELLDTPGILWPKFEDK 174
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI 299
G++LA +++ L+ ++ ++ YL D + +D S +L K A
Sbjct: 175 TTGIKLAILGSIKQELLDFEKLSLILIKYLLVNYPQALKDRYGVD--SSTPAEILEKIA- 231
Query: 300 KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
R F V D A+ I FR+G G + L++
Sbjct: 232 ----QNRGFLVEGGVF----DINRSAKTLINEFRQGKLGRISLEK 268
>gi|228986981|ref|ZP_04147107.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772759|gb|EEM21199.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 296
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|222097283|ref|YP_002531340.1| ribosomal biogenesis gtpase [Bacillus cereus Q1]
gi|221241341|gb|ACM14051.1| GTPase family protein [Bacillus cereus Q1]
Length = 296
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|315222957|ref|ZP_07864836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
gi|315187907|gb|EFU21643.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
Length = 283
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+P + +N +L + V +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGE-KPKLLILNKADLAD---- 65
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
PTL T+ +
Sbjct: 66 ----------------------------------PTL------------TKEWRNYFEKQ 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 80 GV----KALPINSKEQSTVKKVTEAAQSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRL------AGKKIAVTGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++LA ++D L+ + + + Y + F NL+E + +I+M +
Sbjct: 185 KVALKLALTGAIKDDLLPMDEVTIFGINYFKEHYPKELQERFKQMNLEEEAPEIIMDMT- 243
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + R+FI+ R G G LD
Sbjct: 244 ---QKLGFRDDYD------RFY-------RLFIKDIRDGKLGRYTLD 274
>gi|166364230|ref|YP_001656503.1| ribosomal biogenesis GTPase [Microcystis aeruginosa NIES-843]
gi|166086603|dbj|BAG01311.1| GTPase family protein [Microcystis aeruginosa NIES-843]
Length = 279
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 95/351 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + +++HLK VD+V+EV D+R+P + + + N +P +L+LN+ D+I E
Sbjct: 11 IAKAERKLKEHLKLVDVVLEVRDARIPLASHHPQVDDWIGN-KPRLLILNRLDMI---PE 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD--NMTRYHRTEVYNTT-V 117
S ++ V +S V FTN + + V+ I+ + I D N R R +
Sbjct: 67 SAHQQWVTWFKSQGKTVYFTNAK--QGERVKAIIKAAEKIGDEINQKRQLRGMLPRPVRA 124
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+V+G PNVGKS++IN L
Sbjct: 125 VVIGFPNVGKSALINRL------------------------------------------- 141
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
+G+ + +A R AGVTR + V+IS+ + +LD PG+ R+D
Sbjct: 142 -LGRKVVASARR---------------AGVTRQ-LQWVRISDT--LELLDAPGVIPSRLD 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADY---ILFYLNRTG--NYRYVDFFNLDEPSDDIVM 292
N ++LA C + D IA +L LN G RY LD +D +
Sbjct: 183 NQRDAVKLAICEDIGDAGYDNQRIAAAFVDLLVELNYEGLLQSRY-GLNTLDMTGEDFIE 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LA +++ D A + FRKG G++ L+
Sbjct: 242 KLA------------------NLKYQEDKERAAMQLLNDFRKGIIGAIPLE 274
>gi|148380400|ref|YP_001254941.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
3502]
gi|148289884|emb|CAL83992.1| putative GTPase [Clostridium botulinum A str. ATCC 3502]
Length = 292
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWIDSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ VM
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRVM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVT+ S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTK---SKQWIKTKIDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLN 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNIG-----RKRGALISKGEI----DYNRISVIILDEFRGGKLGAISLE 278
>gi|419776422|ref|ZP_14302344.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
gi|383845833|gb|EID83233.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
Length = 283
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+PF+ +N +L + V + +P +LVLNK DL ++
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGD-KPKLLVLNKADLADA--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
H++ RY +
Sbjct: 67 --------------------------------------HLTKEWRRYFENQ--------- 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRL------AGKKIAVTGNKPGVTK---GQQWLKSNKDLEILDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++L+ ++D ++ + + + Y + F NL + + +I+M +
Sbjct: 185 KVALKLSLTGAIKDDVLPMDEVTIFGINYFKEHYPTELQERFKSMNLKDEAPEIIMDMT- 243
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + ++FI+ R G G LD
Sbjct: 244 ---QKLGFRDNYD------RFY-------QLFIKEIRDGKVGRYTLD 274
>gi|415886553|ref|ZP_11548333.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
gi|387587240|gb|EIJ79563.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
Length = 290
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PN GKS++IN L ++ K P GVT++ +K+ ++ + +LDTPG
Sbjct: 123 AMIVGIPNSGKSTLINRLARKNIAKTGNTP-----GVTKA-QQWIKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ ++A Y L +L R R + + L+ SD I
Sbjct: 175 ILWPKFEDEEVGLKLALTGAIKDTILNLQDVAVYALRFLEREYPDRLKERYQLEIISDKI 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V L + + +V D +VA + + R FG + +R
Sbjct: 235 VDLFNEIGKLRGCLMGGGEV---------DYDKVAELVVREVRTEKFGPLTFER 279
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 11/157 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLIN-SKH 59
M + +++ + LK VDI+ E+ D+R+P++ RN ++ + +Q+ +P +L+LNK D+ + SK
Sbjct: 10 MAKARREVSEKLKLVDIIFELVDARIPYSSRNPMIDEIIQH-KPRLLLLNKSDMADQSKT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV- 117
+ I + +++ + + G+++I+ + I + R V +
Sbjct: 69 KEWI------QYFNMNGIRALAINSQAGTGMKEIVALSREILKEKFDRMKAKGVKPRAIR 122
Query: 118 -MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
M+VG+PN GKS++IN L ++ K P + Q
Sbjct: 123 AMIVGIPNSGKSTLINRLARKNIAKTGNTPGVTKAQQ 159
>gi|427723164|ref|YP_007070441.1| Ras superfamily GTP-binding protein YlqF [Leptolyngbya sp. PCC
7376]
gi|427354884|gb|AFY37607.1| Ras superfamily GTP-binding protein YlqF [Leptolyngbya sp. PCC
7376]
Length = 278
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 95/351 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + +++ L VD+V+EV D+R+P+ + + VQ+ +P V+V+N+RD+I S E
Sbjct: 12 IAKAERQLKEQLNRVDVVLEVLDARIPYASHHPQFDEWVQD-KPRVIVVNRRDMIPS--E 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT--RYHR-TEVYNTTV 117
+L + + QS + +FT+ + KGV+ ++ Q M R R +
Sbjct: 69 TLTQWR-DWYQSQKLQPVFTDAQ--KGKGVKGVIKAAQIAGKAMNDRRISRGMKPRPVRA 125
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+V+G+PNVGKS++IN L
Sbjct: 126 VVMGLPNVGKSALINRL------------------------------------------- 142
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
VGK + +A KAG+T+ + V+IS++ I +LD PG+ ++D
Sbjct: 143 -VGKKVVASAR---------------KAGITKQ-LRWVRISDQ--IEMLDAPGVIPWKLD 183
Query: 238 NLECGMRLAAC-----ATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
N E ++LA C A+ + LV + + + LN+ RY + + +D ++
Sbjct: 184 NQENAIKLAICEDIGAASYDNELVAQALVKLLVDLNLNQVLGDRY-ELETGEMSGEDYII 242
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L + R D A + FRKG+ G + L+
Sbjct: 243 ALGEH------------------RFQNDKERAAVALLNDFRKGNLGLLPLE 275
>gi|373121387|ref|ZP_09535255.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
gi|371665405|gb|EHO30570.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
Length = 288
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 65/269 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ L VD+VIE+ D+R+P +N ++++ QN +P ++VL+K+D ++
Sbjct: 15 MTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQN-KPRLIVLSKKDKADAAAT 73
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L C +Q N T VV
Sbjct: 74 KLW-----------------------CSALQ----------------------NETTRVV 88
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
+ + ++ I + S + +Q + M R MVVGVPNVG
Sbjct: 89 ALDILKENIIARIVEESRL----------LMQAKIERMKRRG-IRPRAIRAMVVGVPNVG 137
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+ IN + K K G + GVTR+ + K+++ + +LDTPG+ + ++
Sbjct: 138 KSTFIN-----RISKKKVAVTGDRPGVTRA-LQWSKVNQN--LELLDTPGVLWSKFEDET 189
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYL 269
G+ LA ++D ++ IA + + YL
Sbjct: 190 VGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|90413944|ref|ZP_01221929.1| putative GTPase [Photobacterium profundum 3TCK]
gi|90325006|gb|EAS41521.1| putative GTPase [Photobacterium profundum 3TCK]
Length = 314
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+IE+ + VD++IEV D+R+PF+ N ++ S++ +P+V VLNKRDL + +
Sbjct: 12 MHKARKEIEEAIPKVDVIIEVLDARIPFSSENPMI-SSLRGEKPVVKVLNKRDLADPEMT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + KEQ + I T N V +I+ + ++ + N M++
Sbjct: 71 EMWIAHLEKEQGVKAIAITTE----NIAEVNQIMELCRKLAPGREAMGK----NIRTMIM 122
Query: 121 GVPNVGKSSIINAL 134
G+PNVGKS+IIN +
Sbjct: 123 GIPNVGKSTIINVI 136
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 30/184 (16%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYIL 226
N M++G+PNVGKS+IIN + G+ + V G + VTR Q +I+ + I +
Sbjct: 116 NIRTMIMGIPNVGKSTIINVI------AGRTIAVTGNQPAVTRQ---QQRINLQNGIVLS 166
Query: 227 DTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF----FN 282
DTPGI P+++N G RLAA ++D + ++A + + YL Y D ++
Sbjct: 167 DTPGILWPKVENPHSGFRLAATGAVKDTAMDYTDVAFFTIEYLAAA----YPDLIKARYD 222
Query: 283 LDE--PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSV 340
LD+ P DI L+ + K+ + + D + + I I R G G +
Sbjct: 223 LDDELPETDI-ELMEEIGRKRGCLRPGGRI---------DIHKASEILINELRNGVLGKI 272
Query: 341 MLDR 344
++R
Sbjct: 273 TMER 276
>gi|438002276|ref|YP_007272019.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Tepidanaerobacter acetatoxydans Re1]
gi|432179070|emb|CCP26043.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Tepidanaerobacter acetatoxydans Re1]
Length = 269
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 88/338 (26%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEEK 66
I+ +LK VD+V+E+ D+R P + HL S+ + ++++NK DL + K
Sbjct: 2 IKDNLKLVDVVLELTDARAPLS--THLPDINSLIGNKNSIMIMNKADLADKK-------- 51
Query: 67 VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
I+D +Y + + G+
Sbjct: 52 ---------------------------------ITDMWLKYFKKQ---------GI---- 65
Query: 127 KSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
K+ +N+L+ S +KK P+L + +N +R +T M++G+PNVGKSS+IN
Sbjct: 66 KAIAVNSLKKSELKK----PLL-AWKCKEENGSR-------STRCMIIGIPNVGKSSLIN 113
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
+ + +P GVTR+ M +K+ + + +LDTPGI P+ ++ G++LA
Sbjct: 114 QMAGRKSARTADIP-----GVTRNKM-WLKVDDN--LELLDTPGILWPKFEDKTTGIKLA 165
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
+++ L+ ++ ++ YL D + +D S +L K A R
Sbjct: 166 ILGSIKQELLDFEKLSLILIKYLLVNYPQALKDRYGVD--SSTPAEILEKIA-----QNR 218
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
F V D A+ I FR+G G + L++
Sbjct: 219 GFLVEGGVF----DINRSAKTLINEFRQGKLGRISLEK 252
>gi|241890099|ref|ZP_04777397.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
ATCC 10379]
gi|241863721|gb|EER68105.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
ATCC 10379]
Length = 292
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 27/183 (14%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
MV+GVPNVGKS+ IN L +KK A K GVT+ +K+++ I +LDTPGI
Sbjct: 124 MVIGVPNVGKSTFINKL----IKKNVA-NTANKPGVTKK-QQWLKLNKD--IELLDTPGI 175
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD----FFNLDEPS 287
+P+ DN E G +L+ +++D +I D + YL Y Y++ + ++ S
Sbjct: 176 LMPKFDNQEIGKKLSLIGSIKD----DITPLDDVSLYLIELLKYNYLENLNNLYKINVTS 231
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR--D 345
+D + + + +K++ K D +S ++ I+ FR FG + LD D
Sbjct: 232 EDENVFIMEKVAEKRFKKIGGDYDYDS---------TIKLLIQDFRTQKFGLITLDNYSD 282
Query: 346 FLE 348
LE
Sbjct: 283 LLE 285
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV-----QNIRPMVLVLNKRDLI 55
M + +++++ LK VDIV E+ D+R P + N L + V I + + ++ +
Sbjct: 10 MAKATREVKEKLKLVDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKIDLCDRAE-- 67
Query: 56 NSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL-QHISDNMTRYHRTEVYN 114
+K +S E K V++T+ +N N + K++ + +++ + R +
Sbjct: 68 TAKWKSYFENKGYT-------VVYTDAKNSN--NLNKVIDKAKEELAEKIARQVAKGIKP 118
Query: 115 TTV--MVVGVPNVGKSSIINAL 134
+ MV+GVPNVGKS+ IN L
Sbjct: 119 RAIRSMVIGVPNVGKSTFINKL 140
>gi|229019033|ref|ZP_04175874.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|229025279|ref|ZP_04181699.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|423389855|ref|ZP_17367081.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
gi|423418255|ref|ZP_17395344.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|228736032|gb|EEL86607.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|228742273|gb|EEL92432.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|401106528|gb|EJQ14489.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|401641946|gb|EJS59663.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
Length = 296
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H + I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGH--KAISINAQ--AGQGMKEIAAACKILVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|358067000|ref|ZP_09153486.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
gi|356694849|gb|EHI56504.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
Length = 295
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 65/253 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++ I++ +K VDI+IE+ D+R+P N + Q + V+VLNK DL N +
Sbjct: 10 MTKAMRAIQEDIKIVDIIIEMRDARIPLASSNPDIAVLGQG-KARVIVLNKSDLSNEQIN 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ RK+ IF + R V+K+ L+ S
Sbjct: 69 KAWAQYFRKQGCS---CIFADSRQKGV--VRKLTELLEEAS------------------- 104
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
A R +K+G IS+ R +V+G+PNVG
Sbjct: 105 -----------KAKRERDLKRG-----------ISNRPVR----------AIVLGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN++ KG A G K GVT+ ++++++ + +LDTPG+ +P+I+N E
Sbjct: 133 KSTLINSIAG----KGSA-KTGNKPGVTKG-NQWIRLNKQ--VELLDTPGMLMPKIENEE 184
Query: 241 CGMRLAACATLQD 253
++LA T+ D
Sbjct: 185 TAVKLAFIGTVND 197
>gi|52141650|ref|YP_085179.1| ribosomal biogenesis GTPase [Bacillus cereus E33L]
gi|218904967|ref|YP_002452801.1| ribosomal biogenesis GTPase [Bacillus cereus AH820]
gi|225865819|ref|YP_002751197.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228916475|ref|ZP_04080041.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928886|ref|ZP_04091918.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935152|ref|ZP_04097979.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947557|ref|ZP_04109847.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229092880|ref|ZP_04224014.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|229123352|ref|ZP_04252556.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|229186078|ref|ZP_04313247.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|254721976|ref|ZP_05183765.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A1055]
gi|301055328|ref|YP_003793539.1| GTP-binding protein HSR1-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267734|ref|YP_005120446.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|423550413|ref|ZP_17526740.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
gi|51975119|gb|AAU16669.1| conserved hypothetical protein; GTPase family [Bacillus cereus
E33L]
gi|218539759|gb|ACK92157.1| GTPase family protein [Bacillus cereus AH820]
gi|225788163|gb|ACO28380.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228597254|gb|EEK54905.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|228660128|gb|EEL15764.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|228690502|gb|EEL44285.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|228812077|gb|EEM58408.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824517|gb|EEM70322.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830693|gb|EEM76298.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843054|gb|EEM88136.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377497|gb|ADK06401.1| GTP-binding protein HSR1-related protein [Bacillus cereus biovar
anthracis str. CI]
gi|364513534|gb|AEW56933.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|401190029|gb|EJQ97079.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
Length = 296
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|177656002|ref|ZP_02937129.1| GTPase family protein [Bacillus anthracis str. A0174]
gi|254735876|ref|ZP_05193582.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|172079901|gb|EDT65009.1| GTPase family protein [Bacillus anthracis str. A0174]
Length = 296
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ +++
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADAR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPT----LQHISDNM-TRYHRTEVY 113
L ++ + KE+ H++ I N + +G+++I ++ D M + R V
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVI 121
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RA--LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|283483337|emb|CAX32467.1| nucleostemin-like protein 1 [Isodiametra pulchra]
Length = 565
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 78/339 (23%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGR-NHLLQQSVQNIRPMVLVLNKRDLINSKHESLI 63
K+ +K + D+VI+V D+R P R + QQ + N + +VL+LNK DL+ ++
Sbjct: 131 FKEFKKVIIAADVVIQVLDARDPLACRCKEVEQQVIDNGKKLVLLLNKIDLVPKENVFAW 190
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
E +RKE PTL T++ +
Sbjct: 191 LEYLRKE-----------------------FPTLPF--KGSTQHQKA------------- 212
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR----YHRTEVYNT--TVMVVGVP 177
N+GK R +KK + + +L DN+ R Y R T T+ VVG+P
Sbjct: 213 NLGK-------RKVKLKKIQVQTLESSLAVGVDNLMRLLGNYSRNNDMKTAITIGVVGIP 265
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKSS+IN+L K+ +A VG GVTRS M +V++ K + +LD+PG+ + + +
Sbjct: 266 NVGKSSVINSL-----KRSRACNVGSVPGVTRS-MQEVQLDSK--LRLLDSPGVVIQKQE 317
Query: 238 NLECGMRLAACATLQDHLVGEINIADYIL-FYLNRTGNYRYVDFFNLDEPSDDIVMLLAK 296
+ G+ L C + E+ + ++ L + + + +N+ + + LLA
Sbjct: 318 --QTGLVLRNCVNMY-----EVQDPEAVVEALLKKVTREKMMIIYNI-RAFETVRELLAI 369
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKG 335
A KK + K+ P+ + A+ IE + G
Sbjct: 370 VAYKKGFIKKG---------GIPNLTQAAKSIIEDWNSG 399
>gi|254490062|ref|ZP_05103255.1| putative GTPase [Methylophaga thiooxidans DMS010]
gi|224464726|gb|EEF80982.1| putative GTPase [Methylophaga thiooxydans DMS010]
Length = 297
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 9/153 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K+++K L VD++IEV D+R+PF+ +N +L + ++ +P + VLNK DL + +
Sbjct: 1 MHKASKEMKKILPQVDLIIEVLDARIPFSSQNPMLAE-LRGDKPCIKVLNKIDLADPELT 59
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+L QSH+ + I N + +I L ++ +M V N M++
Sbjct: 60 ALW-------QSHLEQDINVKTLTMNARHNDRI-ADLIALALSMVPGKVQGVKNVQTMIM 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
G+PNVGKS++IN+L + K P + +Q
Sbjct: 112 GIPNVGKSTLINSLAGRQIAKTGNEPAITKMQQ 144
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYI 225
V N M++G+PNVGKS++IN+L + K G + +T+ Q +I I +
Sbjct: 103 VKNVQTMIMGIPNVGKSTLINSLAGRQIAK-----TGNEPAITK---MQQRIKLDKGIVL 154
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE 285
DTPG+ P ++N G RLA +++ + +IA Y + YL F L E
Sbjct: 155 HDTPGVLWPNLENPHSGYRLAITGAIKETAIDNDDIALYAVEYLLDAYPDLLKQRFGLSE 214
Query: 286 PSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR- 344
+ + L K+ + V D VA+I + R G+ G + ++
Sbjct: 215 IPESGMDALEVIGTKRGCLRSGGRV---------DLERVAKIILTEIRAGTLGLISWEKP 265
Query: 345 DFLE 348
D +E
Sbjct: 266 DIIE 269
>gi|49478407|ref|YP_037899.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329963|gb|AAT60609.1| conserved hypothetical protein, GTPase family [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 296
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + ++
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRSI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|126275093|ref|XP_001387029.1| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|126212898|gb|EAZ63006.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 521
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 96/221 (43%), Gaps = 56/221 (25%)
Query: 16 DIVIEVHDSRMPFTGRNHLLQQSV-QNI-RPMVLVLNKRDLINSKHESLIEEKVRKEQSH 73
D+++ V D+R P R+ ++Q+V QN + ++LVLNK DLI
Sbjct: 182 DVILYVLDARDPEATRSKKVEQAVLQNPGKRLILVLNKVDLIP----------------- 224
Query: 74 ISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 133
T N ++ PT V V P S+ N
Sbjct: 225 ------TEALNQWLNFLKSSFPT--------------------VPVKASPGASNSTTFNK 258
Query: 134 LRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 193
+S M + L + S N+ R + V V+G PNVGKSSIINAL + H
Sbjct: 259 NLTSTMTANSLLQALKSYAAKS-NLKR-------SIVVGVIGYPNVGKSSIINALTNRHG 310
Query: 194 KKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KA PVG +AGVT S M QVKI K + ILD+PGI P
Sbjct: 311 NNSKACPVGNQAGVTTS-MRQVKIDNK--LKILDSPGIVFP 348
>gi|30263841|ref|NP_846218.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Ames]
gi|47529266|ref|YP_020615.1| ribosomal biogenesis GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186688|ref|YP_029940.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne]
gi|65321165|ref|ZP_00394124.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
gi|170689661|ref|ZP_02880841.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|170709354|ref|ZP_02899768.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|227813254|ref|YP_002813263.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CDC 684]
gi|229600440|ref|YP_002868075.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A0248]
gi|254683455|ref|ZP_05147315.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254751310|ref|ZP_05203347.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Vollum]
gi|254759310|ref|ZP_05211335.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Australia 94]
gi|386737660|ref|YP_006210841.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|421507377|ref|ZP_15954297.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|421639593|ref|ZP_16080184.1| GTPase YlqF [Bacillus anthracis str. BF1]
gi|30258485|gb|AAP27704.1| GTPase family protein [Bacillus anthracis str. Ames]
gi|47504414|gb|AAT33090.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180615|gb|AAT55991.1| GTPase family protein [Bacillus anthracis str. Sterne]
gi|170125728|gb|EDS94641.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|170666385|gb|EDT17168.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|227002777|gb|ACP12520.1| GTPase family protein [Bacillus anthracis str. CDC 684]
gi|229264848|gb|ACQ46485.1| GTPase family protein [Bacillus anthracis str. A0248]
gi|384387512|gb|AFH85173.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|401822511|gb|EJT21661.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|403393258|gb|EJY90503.1| GTPase YlqF [Bacillus anthracis str. BF1]
Length = 296
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 88/160 (55%), Gaps = 17/160 (10%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPT----LQHISDNM-TRYHRTEVY 113
L ++ + KE+ H++ I N + +G+++I ++ D M + R V
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVI 121
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RA--LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|153940438|ref|YP_001391740.1| ribosomal biogenesis GTPase [Clostridium botulinum F str.
Langeland]
gi|384462748|ref|YP_005675343.1| GTP-binding protein [Clostridium botulinum F str. 230613]
gi|152936334|gb|ABS41832.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
gi|295319765|gb|ADG00143.1| GTP-binding protein [Clostridium botulinum F str. 230613]
Length = 292
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWINSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ VM
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRVM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVT+ S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTK---SKQWIKTKIDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLD 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNIG-----RKRGALISKGEI----DYNRISVIILDEFRGGKLGAISLE 278
>gi|118479060|ref|YP_896211.1| ribosomal biogenesis GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418285|gb|ABK86704.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
str. Al Hakam]
Length = 314
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 141 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 192
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 193 ILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDI 252
Query: 291 VMLL 294
V L
Sbjct: 253 VELF 256
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 28 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 84
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 85 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 139
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 140 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 177
>gi|153930882|ref|YP_001384617.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
19397]
gi|153936572|ref|YP_001388134.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. Hall]
gi|168180677|ref|ZP_02615341.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|387818663|ref|YP_005679010.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|421833916|ref|ZP_16269084.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
gi|152926926|gb|ABS32426.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|152932486|gb|ABS37985.1| GTP-binding protein [Clostridium botulinum A str. Hall]
gi|182668420|gb|EDT80399.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|322806707|emb|CBZ04276.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|409744796|gb|EKN43240.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
Length = 292
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWIDSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ VM
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRVM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVT+ S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTK---SKQWIKTKIDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLD 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNIG-----RKRGALISKGEI----DYNRISVIILDEFRGGKLGAISLE 278
>gi|301066444|ref|YP_003788467.1| GTPase [Lactobacillus casei str. Zhang]
gi|300438851|gb|ADK18617.1| Predicted GTPase [Lactobacillus casei str. Zhang]
Length = 286
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 148/337 (43%), Gaps = 78/337 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + K +++ +K VD+V+EV D+R P + RN PM+ +
Sbjct: 11 MAKARKQVQEKIKQVDLVLEVVDARTPESSRN-----------PML-------------D 46
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L+ +K R ++ N Q ++D + Y
Sbjct: 47 ELVADKPR--------IMVLNK---------------QDLADPALTAAWVQYYQ------ 77
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTV--MVVGVPN 178
+ G ++I A+ + H K+ + +P L T + +++ + R + N + M +G+PN
Sbjct: 78 ---DQGFAAI--AIDAQHAKRLQQIPQLAT-KLMAEKIARKKARGIRNPMIKAMCIGIPN 131
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKS+++N L +++ AV G K GVT++ +K S+ +LDTPGI P+ +
Sbjct: 132 VGKSTVLNRL----VRRNIAV-TGNKPGVTKN-QQWLKASDN--FQLLDTPGILWPKFAS 183
Query: 239 LECGMRLA-----ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVML 293
GMRLA A A Q+ +VG + ++ Y +V +L+E D+++
Sbjct: 184 QTIGMRLAFTGAIADAVFQEDMVGLYGLTYFMAHYPAALKKAYHVTDDDLNEAPHDLLVK 243
Query: 294 LAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIE 330
L ++ + F A+D + + G++ R +E
Sbjct: 244 LTRS----QGFAEAYDRMAERLIFDARQGKLGRFTLE 276
>gi|449950694|ref|ZP_21808347.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
gi|449167009|gb|EMB69917.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
Length = 283
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 31/202 (15%)
Query: 154 ISDNMTRYHRTEVYNTTV--MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV 211
++D + + + T+ M+VG+PNVGKS+++N L K VG K GVT+
Sbjct: 105 MTDKLVKLRERGIQKETLRTMIVGIPNVGKSTLMNRLAGK-----KIAIVGNKPGVTKG- 158
Query: 212 MSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
Q + + ILDTPGI P+ + G++LA ++D+L+ I + L + R
Sbjct: 159 --QQWLKSNKNLEILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGLDFFKR 216
Query: 272 TGNYRYVDFF---NLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIF 328
R ++ + +L+E + +I+M + +K F+ +D R + ++F
Sbjct: 217 YYPERLLEHYKGIDLEEEAPEIIM----SMTQKLGFRDDYD------RFY-------QVF 259
Query: 329 IEHFRKGSFGSVMLDRDFLELD 350
I+ R G G LDR ELD
Sbjct: 260 IKDVRDGRLGCYTLDR-LAELD 280
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + ++++LK VD V + D+R+P + +N +L + + + +P +++LNK DL +S
Sbjct: 11 MSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGD-KPKLIILNKVDLADSTCT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV--M 118
+ E E+ I + ++ K V + L ++D + + + T+ M
Sbjct: 70 A--EWCNFFEKQGIKALAVSSKEQSAVKKVTEAAKGL--MTDKLVKLRERGIQKETLRTM 125
Query: 119 VVGVPNVGKSSIINAL 134
+VG+PNVGKS+++N L
Sbjct: 126 IVGIPNVGKSTLMNRL 141
>gi|255729650|ref|XP_002549750.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132819|gb|EER32376.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 524
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSV-QNI-RPMVLVLNKRDLINSKHESLIEEKVRKEQS 72
D+++ V D+R P + R+ ++Q+V QN + ++LVLNK DLI
Sbjct: 184 ADVILYVLDARDPESTRSRKVEQAVLQNPGKRLILVLNKVDLIP---------------- 227
Query: 73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 132
TN N ++ PT V V P S+ N
Sbjct: 228 -------TNALNQWLNFLKSSFPT--------------------VPVKAAPGATNSTSFN 260
Query: 133 ALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH 192
++ M + L + S N+ R + V V+G PNVGKSSIINAL + H
Sbjct: 261 KNLTNSMTSESLLKALKSFAAKS-NLKR-------SIIVGVIGYPNVGKSSIINALTNRH 312
Query: 193 MKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
KA PVG +AGVT S + +VKI K + ILD+PGI P
Sbjct: 313 GNNSKACPVGNQAGVTTS-LREVKIDNK--LKILDSPGIVFP 351
>gi|359411414|ref|ZP_09203879.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
gi|357170298|gb|EHI98472.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
Length = 287
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 131 INALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPNVGKSSIINAL 188
+N L+ +K K P+L +L + + R + N T VMVVG+PNVGKS+ IN +
Sbjct: 85 VNCLKGDGLKNIK--PMLLSL--LKEKHDRLKAKGMVNITMRVMVVGIPNVGKSTFINKM 140
Query: 189 RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAAC 248
+++ K G K GVT+ S+ I I +LDTPG+ PR ++ E + LA
Sbjct: 141 ARNNIAK-----TGDKPGVTK---SKQWIKTGMGIELLDTPGVLWPRFEDDETALNLAFT 192
Query: 249 ATLQDHLVGEINIADYILFYLNR-TGNY------RYVDFFNLDEPSDDIVMLLAKAAIKK 301
++D + ++I + L + R G+Y RY + P D + AI K
Sbjct: 193 GAIKDEI---MDIEELALKLVERLQGSYEDKLKERYKLAEVFENPLDTL------DAIGK 243
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KR +S + D +A I ++ FR G G++ L+R
Sbjct: 244 ---KRGTLISGGQI----DYNRLAVILLDEFRGGKMGAITLER 279
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I+++LK VD VIE+ D+R+P + N +++ ++ +P +++LNK DL +++
Sbjct: 10 MKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIKKLLEG-KPRIILLNKSDLTDNRVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL-QHISDNMTRYHRTEVYNTT--V 117
+ +E+ + EV NC + G++ I P L + + R + N T V
Sbjct: 69 KEWINYLTEEEVKVLEV---NCLKGD--GLKNIKPMLLSLLKEKHDRLKAKGMVNITMRV 123
Query: 118 MVVGVPNVGKSSIINAL-RSSHMKKGKAVPILPTLQHISDNM 158
MVVG+PNVGKS+ IN + R++ K G + + Q I M
Sbjct: 124 MVVGIPNVGKSTFINKMARNNIAKTGDKPGVTKSKQWIKTGM 165
>gi|390440761|ref|ZP_10228966.1| GTPase family protein [Microcystis sp. T1-4]
gi|389835929|emb|CCI33092.1| GTPase family protein [Microcystis sp. T1-4]
Length = 279
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 142/351 (40%), Gaps = 95/351 (27%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + +++HLK VD+V+EV D+R+P + + + N +P +L+LN+ D+I E
Sbjct: 11 IAKAERKLKEHLKLVDVVLEVRDARIPLASHHPQVDDWIGN-KPRLLILNRLDMI---PE 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD--NMTRYHRTEVYNTT-V 117
S ++ V +S V FTN + + V+ I+ + I D N R R +
Sbjct: 67 SAQQQWVTWFKSQGETVYFTNAK--QGERVKAIIKAAEKIGDAINQKRQLRGMLPRPVRA 124
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
+V+G PNVGKS++IN L
Sbjct: 125 VVIGFPNVGKSALINRL------------------------------------------- 141
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
+G+ + +A R AGVTR + V+IS+ + +LD PG+ R+D
Sbjct: 142 -LGRKVVASARR---------------AGVTRQ-LQWVRISDT--LELLDAPGVIPSRLD 182
Query: 238 NLECGMRLAACATLQDHLVGEINIADY---ILFYLNRTG--NYRYVDFFNLDEPSDDIVM 292
N + ++LA C + D I +L LN G RY LD +D +
Sbjct: 183 NQKDAVKLAICEDIGDAGYDNQRIGAAFVDLLVELNYEGLLQSRY-GLNTLDMTGEDFIE 241
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LA +++ D A + FRKG G++ L+
Sbjct: 242 KLA------------------NLKYQEDKERAAMQLLNDFRKGIIGAIPLE 274
>gi|83589822|ref|YP_429831.1| GTP-binding protein YlqF [Moorella thermoacetica ATCC 39073]
gi|83572736|gb|ABC19288.1| Ras superfamily GTP-binding protein YlqF [Moorella thermoacetica
ATCC 39073]
Length = 270
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 136/342 (39%), Gaps = 79/342 (23%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIE 64
L+ + ++LK VD V+EV D+R+P + R L++ + R V+VL + DL + +
Sbjct: 5 LQSLRQYLKVVDAVLEVADARLPVSSRYPDLEKLI-GFRARVVVLTRADLADPAATACWL 63
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
E K ++ + + N R + ++L Q++
Sbjct: 64 E---KLRAGGTRAVAMNARTGSG---DRLL--YQYLK----------------------- 92
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
+I A R + ++G + + R VM +G+PNVGKSS+
Sbjct: 93 ----AIAKAKREARARRG-----------LGEAPLR----------VMALGIPNVGKSSV 127
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMR 244
+N L + G + G+TR ++I + + +LDTPG+ PR +
Sbjct: 128 LNRLAGRGAAR-----TGNRPGITRGP-QWIRIKDN--LELLDTPGVLWPRWREPRTALW 179
Query: 245 LAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD--DIVMLLAKAAIKKK 302
L A + V + IA + +L R + + E D DI+ + +A
Sbjct: 180 LGALGCAPEESVPVVGIACLVGEFLLREAPGTLAARYGIQEQGDATDILAAIGRA----- 234
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
R F + V D + AR + FR+G G L+R
Sbjct: 235 ---RGFLLPGGVV----DQEKTARALVNDFREGRLGRFTLER 269
>gi|433446047|ref|ZP_20410178.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
gi|432000792|gb|ELK21684.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
Length = 281
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G GVT++ +K+ ++ + +LDTPG
Sbjct: 124 ALIVGIPNVGKSTLINRLAGKHIAK-----TGDTPGVTKA-QQWIKVGKE--LELLDTPG 175
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D ++ ++A Y L +L+ R + + L + +DI
Sbjct: 176 ILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFLSTHYPDRLKERYALADIPEDI 235
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V L I K KR + V D +VA + + R G + DR
Sbjct: 236 VQLFDD--IGK---KRGCLAAGGVV----DYDKVAELVLRDIRTEKLGRLSFDR 280
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 8/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLIN---S 57
M + +++ + LK +DIV E+ D+R+P + RN L+ + V N +P +++LNK D+ + +
Sbjct: 10 MAKAKREVTEKLKLIDIVFELVDARIPISSRNPLIDEIVAN-KPRIILLNKADMADPDVT 68
Query: 58 KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV 117
K + + I T + +K+ P + + + R
Sbjct: 69 KQWIDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRPKFEKMIAKGIKRPRA----MRA 124
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L H+ K P + Q
Sbjct: 125 LIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQ 160
>gi|190344780|gb|EDK36530.2| hypothetical protein PGUG_00628 [Meyerozyma guilliermondii ATCC
6260]
Length = 514
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 60/232 (25%)
Query: 9 EKHLKNV----DIVIEVHDSRMPFTGRNHLLQQSV-QNI-RPMVLVLNKRDLINSKHESL 62
+K KNV D+V+ V D+R P R+ ++Q+V QN + ++LVLNK DLI +
Sbjct: 167 DKIFKNVVEASDVVLYVLDARDPEATRSRKVEQAVLQNPGKRLILVLNKVDLIPAP---- 222
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
V K+ ++ + F +P + + H E+ N+
Sbjct: 223 ----VLKQWLNVLKSSFPT------------VPVKASMGSTNSTSHNKELTNS------- 259
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+ +++ AL+S K N+ R + V V+G PNVGKS
Sbjct: 260 --ITAKNLLQALKSYAAK---------------SNLKR-------SIVVGVIGYPNVGKS 295
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
SIINAL + H KA PVG AGVT S M +VK+ K + ILD+PGI P
Sbjct: 296 SIINALTNRHGNNAKACPVGNLAGVTTS-MREVKVDNK--LKILDSPGIVFP 344
>gi|422884181|ref|ZP_16930630.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
gi|332360874|gb|EGJ38680.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
Length = 283
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 144/349 (41%), Gaps = 91/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+P + +N +L + V + +P +L+LNK DL +
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLLILNKADLADPV-- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++++ QS+ +G+ PTL
Sbjct: 68 -----RIKEWQSYFE-----------SQGI----PTLS---------------------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
IN+ S +KK ++ R R E T M++G+PN G
Sbjct: 86 ----------INSKEQSAVKKVTDAAKKLMADKLARQKERGIRIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEDET 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIVMLL 294
++LA ++D+L+ + + L Y T ++ +D L + S D++M +
Sbjct: 186 VALKLALTGAIKDNLLPMDEVTIFGLNYFKEHYPEELTARFKQLD---LSQESPDMIMDM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + +F++ R G G LD
Sbjct: 243 T----QKLGFRDDYD------RFY-------SLFVKEVRDGKLGRYCLD 274
>gi|42782930|ref|NP_980177.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 10987]
gi|402556041|ref|YP_006597312.1| GTPase YlqF [Bacillus cereus FRI-35]
gi|42738857|gb|AAS42785.1| GTPase family protein [Bacillus cereus ATCC 10987]
gi|401797251|gb|AFQ11110.1| GTPase YlqF [Bacillus cereus FRI-35]
Length = 296
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPDRLKERYNLNDIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|257869679|ref|ZP_05649332.1| GTP-binding protein [Enterococcus gallinarum EG2]
gi|257803843|gb|EEV32665.1| GTP-binding protein [Enterococcus gallinarum EG2]
Length = 289
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDIV E+ D+R+P + RN +L Q +Q +P ++++NK DL + +
Sbjct: 11 MAKAKREVSEKLKFVDIVFELVDARLPISSRNPMLDQILQQ-KPRLILINKADLADPQQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
L E RK Q ++ I + +G++ I+P + + + + R + +
Sbjct: 70 KLWEGYFRK-QGFLAMAINAQ----DSQGIKMIVPKAKEVLQEKIARDKARGLKPRPIRA 124
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 125 MVIGIPNVGKSTLMNRL 141
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ Q + + +LDTPG
Sbjct: 124 AMVIGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG---QQWLRFGTELELLDTPG 175
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D L+ +IA + L + R R ++L +
Sbjct: 176 ILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGLDFFARYYEGRIAQRYSLSAEEEQC 235
Query: 291 VM--LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ LL K +K+ +K +D S V + R+G G LDR
Sbjct: 236 LAPELLMKIT-EKRGYKDNYDRGSELV-------------VFDIRQGKLGRYTLDR 277
>gi|170759247|ref|YP_001787754.1| ribosomal biogenesis GTPase [Clostridium botulinum A3 str. Loch
Maree]
gi|169406236|gb|ACA54647.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
Length = 292
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 147/351 (41%), Gaps = 90/351 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I++ LK VD +IE+ D+R+ + +N ++ N +P +++LNK+DL
Sbjct: 10 MAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIKDICGN-KPRIILLNKKDLA----- 63
Query: 61 SLIEEKVRKE------QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYN 114
E+KV K+ Q +I +V+ N +G+ KI PTL +
Sbjct: 64 ---EDKVTKKWINSLSQDNI-KVLAVNS--VTGEGLNKIKPTLNEL-------------- 103
Query: 115 TTVMVVGVPNVGKSSIINALRSSH--MKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
L+ H MK V I+ VM
Sbjct: 104 -------------------LKEKHERMKNKGLVKIV--------------------DRVM 124
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232
VVG+PNVGKSS IN M K VG + GVT+ S+ I K I ++DTPG+
Sbjct: 125 VVGIPNVGKSSFIN-----KMAKNSIAKVGDRPGVTK---SKQWIKTKIDIELMDTPGVL 176
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
P++D+ + LA ++D ++ +A ++ L R + + L+ ++ +
Sbjct: 177 WPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQIKYPERLMKRYKLEALEENPLD 236
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L KR +S + D ++ I ++ FR G G++ L+
Sbjct: 237 NLDNIG-----RKRGALISKGEI----DYNRISVILLDEFRGGKLGAISLE 278
>gi|418962640|ref|ZP_13514494.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383345175|gb|EID23308.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 283
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 87/347 (25%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+P + +N +L + V +P +L+LNK DL +S
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGE-KPKLLILNKGDLADS--- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ RY ++
Sbjct: 67 --------------------------------------DLTKEWRRYFESQ--------- 79
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
G+ K+ IN+ S +KK + I+ R + E T M++G+PN G
Sbjct: 80 GI----KTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPV-GPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
KS+++N L GK + V G K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRL------AGKKIAVTGNKPGVTKG---QQWLKSNRNLEILDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF---NLDEPSDDIVMLLAK 296
+ ++LA ++D L+ + + + Y + F +L+E + +I+M +
Sbjct: 185 KVALKLALTGAIKDDLLPMDEVTIFGINYFKEHYPKELQERFKQMDLEEEAPEIIMDMT- 243
Query: 297 AAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + R+FI+ R G G LD
Sbjct: 244 ---QKLGFRDDYD------RFY-------RLFIKDIRDGKLGRYTLD 274
>gi|119491444|ref|ZP_01623463.1| GTP-binding protein [Lyngbya sp. PCC 8106]
gi|119453439|gb|EAW34602.1| GTP-binding protein [Lyngbya sp. PCC 8106]
Length = 277
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 85/346 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + +++++ LK VD+V+EV D+R+P T + + Q V + + VLV+N+ D+I+
Sbjct: 10 IAKAERNLQEQLKRVDVVLEVRDARIPLTTHHPQVPQWVGS-KAKVLVINRMDMIS---- 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
L Q D T + +
Sbjct: 65 ---------------------------------LEVKQQWEDWFMEQGETPYFTNSQKGQ 91
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
GV V K++ + + ++ + + P +V+G PNVG
Sbjct: 92 GVAEVAKAARKVGVEVNQKRRSRGMLPRPV-------------------RAVVMGFPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L K K V +AGVTRS + V+IS++ I +LD PG+ RI+N E
Sbjct: 133 KSALINRLL-----KRKVVDSARRAGVTRS-LRWVRISDQ--IELLDAPGVIPARINNEE 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTG-NYRYVDFFNL--DEPSDDIVMLLAKA 297
++LA C + + +A ++ +L G + D +N D + ++ +
Sbjct: 185 KALKLAVCEDIGEASYENQEVAAALVEFLLDLGLESKLGDRYNFTPDNITGEVYL----- 239
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
++S+S + D AR + FRKG G++ L+
Sbjct: 240 ----------HQLASHSYQ--DDIERTARHLLNDFRKGLLGALPLE 273
>gi|404492367|ref|YP_006716473.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
gi|77544470|gb|ABA88032.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
Length = 280
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 79/338 (23%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEE 65
+ I + + +D+VIEV D+R+P N LL + ++ ++P + VLNK DL + + + E
Sbjct: 14 QQIAEAMPKIDLVIEVLDARLPMASSNPLLAE-MRGVKPCIKVLNKNDLADPE---VTGE 69
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 125
VR F R KG+
Sbjct: 70 WVR----------FFESRG---KGM----------------------------------- 81
Query: 126 GKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSII 185
K+ INA R + + + L +S ++ + +M+VG+PNVGKS++I
Sbjct: 82 -KALAINATRKAELTR---------LVRLSRSLVPHRGGPGKPLRIMIVGIPNVGKSTLI 131
Query: 186 NALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRL 245
N L + K VG K +TRS QV + L++ DTPG+ P +++ M L
Sbjct: 132 NTLCGRKIAK-----VGDKPAITRSA-QQVDLRNGILLF--DTPGVLAPNLEDQRGAMCL 183
Query: 246 AACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
AA + D+ + IA + +L + ++ + L E + +L I++ +
Sbjct: 184 AATGAIGDNAMDHERIAAFTGDFLLERYPQQLIERYRLKELPQNGELL-----IEQVGRR 238
Query: 306 RAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R ++ V D A I + + G G + ++
Sbjct: 239 RGCLMAGGVV----DRQRAAEIVLHDLQAGRLGRISME 272
>gi|451344263|ref|ZP_21913323.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449336977|gb|EMD16145.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 289
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 88/354 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++IE +K VD+VIE+ D+R PF+ RN + ++N +P ++++ K DL +S+
Sbjct: 15 MAKAEREIESRIKIVDMVIELVDARAPFSSRNTSFDRILKN-KPRLVLMTKSDLADSQ-- 71
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I EK QS E KG + L++ + ++ N +
Sbjct: 72 --ITEKW---QSFYKE-----------KGFLSLAVNLKNFKE------EKKIINMCL--- 106
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
++++ R +KG ++ M++GVPNVG
Sbjct: 107 --------AMLSEKREKEAQKG---------------------LKIRAIRAMIIGVPNVG 137
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++INAL K KA G K GVT++ ++I++ + DTPGI P+ +
Sbjct: 138 KSTLINAL-----AKRKAAIAGNKPGVTKA-QQIIRINKD--FELFDTPGILPPKYSDFI 189
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNL--DEPSDDIVMLLAKAA 298
+A +++ ++ ++ Y + YLN+ + + + L DE D
Sbjct: 190 TSCNVALIGSIKKDILPLDDLFIYAVKYLNQHYSKALMKRYGLSFDENQD---------- 239
Query: 299 IKKKWFKRAFDVSSNSVRMFP------DTGEVARIFIEHFRKGSFGSVMLDRDF 346
W A+D + VR P D V IF + G FG + + +
Sbjct: 240 ----WILDAYDQIA-LVRHLPKKNGETDYDRVQDIFFKDLSDGVFGGITWENPY 288
>gi|414160551|ref|ZP_11416817.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878071|gb|EKS25960.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 289
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 11/157 (7%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VD+V E+ D+R+P++ RN ++ + +QN +P V++LNK+D+ N
Sbjct: 10 MAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIQN-KPRVVILNKKDMAN---- 64
Query: 61 SLIEEKVRKEQSHISEVIF-TNCRNPNCKGVQKI-LPTLQHISDNMTRYHRTEVYNTTV- 117
+ E + E S+ F + + KG++ + +Q + R + +
Sbjct: 65 --LNETAKWEDYFRSKGYFPVSVDAKHGKGLKSVEQAAVQATKEKFERDKAKGLKPRAIR 122
Query: 118 -MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
M+VG+PNVGKS++IN L + + K P + Q
Sbjct: 123 AMIVGIPNVGKSTLINKLANKAIAKTGNTPGVTKQQQ 159
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
M+VG+PNVGKS++IN L + + K P GVT+ +K+ + + +LDTPG
Sbjct: 123 AMIVGIPNVGKSTLINKLANKAIAKTGNTP-----GVTKQ-QQWIKVGKS--LQLLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL-FY 268
I P+ ++ G +L+ ++D +V ++A + L FY
Sbjct: 175 ILWPKFEDQTVGKKLSLTGAIKDSIVHLDDVAIFGLEFY 213
>gi|238926778|ref|ZP_04658538.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|238885310|gb|EEQ48948.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
Length = 302
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 137/337 (40%), Gaps = 76/337 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
++++LK+VD+V+E+ D+R+P + N +L++ V +P ++VLNK DL +
Sbjct: 33 VQENLKSVDVVVELLDARIPMSSANPVLREMVGG-KPRLIVLNKADLAD----------- 80
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
++++ +Y+ E + V V V G
Sbjct: 81 ------------------------------ENVTRAWVKYYAAEGL-SAVPVDAVKGKGT 109
Query: 128 SSIINAL-RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN 186
++ A+ R + K K V H + M++G+PNVGKSS+IN
Sbjct: 110 KELVQAIARCAKPKTDKLV---------------QHGAKPRAARCMILGIPNVGKSSLIN 154
Query: 187 ALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLA 246
L G V + GVTR+ +++ + + +LD PGI P+ ++ + + LA
Sbjct: 155 RLSG-----GTKTKVENRPGVTRA-KQWIRLGAQ--LELLDMPGILWPKFEDQQAALHLA 206
Query: 247 ACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKR 306
+ D++ ++ +L L + LDEP + LL K+ +
Sbjct: 207 FTGAINDNVYDVGSVVLLLLNRLREDSPQSLCTRYRLDEPLPEGANLLDAIGRKRGCLRA 266
Query: 307 AFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ D + ++ + FR G G + LD
Sbjct: 267 GGKI---------DYEKAEQVILTDFRSGRLGRISLD 294
>gi|334340375|ref|YP_004545355.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
gi|334091729|gb|AEG60069.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
Length = 283
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
MV+G+PNVGKSS IN L K +P GVT+ Q I + + +LDTPGI
Sbjct: 126 MVLGIPNVGKSSFINRLVGRRATKTGDLP-----GVTKG---QQWIRLEGSLELLDTPGI 177
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
P+ ++ + G +LA +++ + +A +L +L T + + + L + + D V
Sbjct: 178 LWPKFEDPQVGFKLAVTGAVKEQVFDVYEVALKLLQWLVETNPEKIKERYRLTDLNPDRV 237
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
LL+ +R VS +V D + A + ++ FR+G+ G LD
Sbjct: 238 GLLSDIGA-----RRGMLVSGGAV----DELKAAHLILKEFREGTLGRYTLD 280
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++ LK VD+ +E+ D+R+P + N ++ Q + N +P V++LNK DL +
Sbjct: 12 MAKARRQVQEALKLVDVAVELLDARIPLSSENPMIGQILGN-KPRVIILNKSDLADPGLT 70
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRY--HRTEVYNTTVM 118
++K+ ++Q + + + K V K L +++ M + M
Sbjct: 71 KAWQKKLERDQVKV--IAVDTLKGEGLKEVPKAANLL--VAEQMAKLAAKGRRARAARCM 126
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVP 146
V+G+PNVGKSS IN L K +P
Sbjct: 127 VLGIPNVGKSSFINRLVGRRATKTGDLP 154
>gi|227529207|ref|ZP_03959256.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
gi|227350882|gb|EEJ41173.1| GTP-binding protein [Lactobacillus vaginalis ATCC 49540]
Length = 290
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 139/349 (39%), Gaps = 87/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I + + VDIV E+ D+R+P++ +N + + + +P +L++ K DL +SK
Sbjct: 11 MAKALRQIREQMPLVDIVFELVDARVPYSSQNPEIALAAGD-KPRLLIMTKTDLADSKR- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ E + + H V+ + R N V KI
Sbjct: 69 --LGEWLTYFKEHNQPVLALDSRQQN---VSKI--------------------------- 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V K + + L K K PI M VGVPNVG
Sbjct: 97 -VTAKSKEILHDKLAEEAAKGLKKRPI----------------------RAMCVGVPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ K G + GVT Q + + +LDTPG+ + + +
Sbjct: 134 KSTLLN-----HLVKKNVAVTGNRPGVT---TGQQWLRSSAELELLDTPGVLWHKFASQK 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRT------GNYRYVDFFNLDEPSDDIVMLL 294
G LA ++D L + ++A + L YL R YR D +LDE + +LL
Sbjct: 186 QGTMLALSGAIKDSLYAKDDVALFALDYLRRQQPEELKKRYRLTD-ADLDESVSNPDLLL 244
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D +S R+ E RKG G + ++
Sbjct: 245 --RITEKMGFRDDYDRASE------------RLIFE-LRKGKLGPITME 278
>gi|297206002|ref|ZP_06923397.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
gi|297149128|gb|EFH29426.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
Length = 280
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 140/347 (40%), Gaps = 82/347 (23%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +E L +D+++EV D+R+P + RN L+ V + +P +++LNK DL +
Sbjct: 10 MNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGD-KPHIIILNKADLADPNEI 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV- 119
+ E K++ + + ++ N N + K++ D + + N T+ +
Sbjct: 69 NKWEAKLKSDGKFVLKL--DAQHNTNMAPLFKLIKL--AAKDRIDKLEAKGASNPTIRIC 124
Query: 120 -VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
VG+PN GKS+IIN L V +V P
Sbjct: 125 LVGIPNCGKSTIINRL-------------------------------VGRNVAIVGDRPG 153
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
V K R S +K ++V + LDTPGI P+ ++
Sbjct: 154 VTK-------RQSWLKTSESVQI------------------------LDTPGILWPKFED 182
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS-DDIVMLLAKA 297
G RLAA ++++ + ++A +++ YL V F L E S +D+ +
Sbjct: 183 QAVGFRLAALGSIKESVFHADDVALFVMEYLKENYFKSLVKFSRLSEQSVNDLPLPELLL 242
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A+ +K+ R D +++ + RKG G + L++
Sbjct: 243 AMTEKYGMR------------DDYEKMSLFLLNQLRKGRLGRINLEK 277
>gi|389573273|ref|ZP_10163348.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
gi|388426970|gb|EIL84780.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
Length = 282
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++G+PNVGKS++IN L ++ K G + G+T S VK+ ++ + +LDTPG
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ + G+RLA ++D ++ ++A Y L +L R ++L E +D
Sbjct: 175 ILWPKFEDEQVGLRLAVTGAIKDSIINLQDVAVYALRFLEEHYPERLKKRYDLAEIPEDT 234
Query: 291 VMLLAKAAIKK 301
V L K+
Sbjct: 235 VELFDAIGTKR 245
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN ++++ +QN +P +++LNK D + +
Sbjct: 10 MAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQN-KPKIMLLNKADKADPRM- 67
Query: 61 SLIEEKVRKEQSHISE--VIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV 117
++ Q+H V + + +G+ +I+ T + I + R V +
Sbjct: 68 ------TKEWQAHFEAQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
+++G+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ 159
>gi|404418476|ref|ZP_11000243.1| GTPase YlqF [Staphylococcus arlettae CVD059]
gi|403489069|gb|EJY94647.1| GTPase YlqF [Staphylococcus arlettae CVD059]
Length = 290
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 13/151 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK VD+V E+ D+R+P++ RN ++ + +Q +P V++LNK+D+ N K
Sbjct: 10 MAKAKRQVTEQLKKVDVVFELVDARIPYSSRNPMIDEVIQQ-KPRVIILNKKDMANLK-- 66
Query: 61 SLIEEKVRKEQSHISEV--IFTNCRNPNCKGVQKI-LPTLQHISDNMTRYHRTEVYNTTV 117
++ K QS+ S + KG++++ +Q D + + +
Sbjct: 67 -----ELEKWQSYFSAQGNFPVAVDAKHGKGLKQVEQAAIQATEDKFAKEREKGLKPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVP 146
M+VG+PNVGKS++IN L + + K P
Sbjct: 122 RAMIVGIPNVGKSTLINKLANRAIAKTGNTP 152
>gi|212639583|ref|YP_002316103.1| ribosomal biogenesis GTPase [Anoxybacillus flavithermus WK1]
gi|338819263|sp|B7GGD6.1|RBGA_ANOFW RecName: Full=Ribosome biogenesis GTPase A
gi|212561063|gb|ACJ34118.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 284
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G GVT++ +K+ ++ + +LDTPG
Sbjct: 127 ALIVGIPNVGKSTLINRLAGKHIAK-----TGDTPGVTKA-QQWIKVGKE--LELLDTPG 178
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D ++ ++A Y L +L R + + L + +DI
Sbjct: 179 ILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFLAAYYPDRLKERYALADIPEDI 238
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V L I K KR + V D +VA + + R G + DR
Sbjct: 239 VQLFDD--IGK---KRGCLAAGGVV----DYDKVAELVLRDIRTEKLGRLSFDR 283
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN L+ + V N +P +++LNK D+ +
Sbjct: 13 MAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVAN-KPRIILLNKADMADP--- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPT----LQHISDNMTRYHRTEVYNTT 116
+ ++ V + + I + ++ GV++++ L+ + M
Sbjct: 69 DVTKQWVDFFAAQQIDAIAIDSQSGT--GVKQMVAVAKEKLRSKFEKMMAKGMKRPRAMR 126
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L H+ K P + Q
Sbjct: 127 ALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQ 163
>gi|319937634|ref|ZP_08012038.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
gi|319807276|gb|EFW03888.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
Length = 300
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 136/351 (38%), Gaps = 87/351 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + ++I + +K +DIVIE+ DSR P++ +N +L + N +P ++VL K+D+ +
Sbjct: 22 MAKARREISERMKVIDIVIELVDSRAPYSSKNPMLNDII-NQKPRLIVLTKKDMSD---- 76
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+EK K+ H E I + N K N Y +
Sbjct: 77 ---DEKT-KQWVHYYESIGYQAMSVNLK--------------NFNEYQK----------- 107
Query: 121 GVPNVGKSSIINALRS---SHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 177
II R M K KA I P MV+G+P
Sbjct: 108 ---------IIEKCRKVLKPKMDKEKARGIKPRA-----------------IRAMVLGIP 141
Query: 178 NVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRID 237
NVGKS+ IN L + KA G K GVT+ +Q I + DTPG+ P+ +
Sbjct: 142 NVGKSTFINKLANR-----KATVTGNKPGVTK---AQQIIRVAKDFELFDTPGVLWPKFE 193
Query: 238 NLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKA 297
+ +A +++ ++ ++ Y++ YL + + + L+ DD
Sbjct: 194 DEHIARNIALLGSIKQDILPLDDLFVYVMTYLTKYYPDLLKERYGLEIDLDD-------- 245
Query: 298 AIKKKWFKRAFDVSSNS-----VRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
W +AFD + +R D V ++ GS G V +
Sbjct: 246 ---SDWLLKAFDHIAQKRKIKLLRGETDYDRVIQLVFSEIYDGSIGKVTWE 293
>gi|32473919|ref|NP_866913.1| ribosomal biogenesis GTPase [Rhodopirellula baltica SH 1]
gi|421615191|ref|ZP_16056223.1| ribosomal biogenesis GTPase [Rhodopirellula baltica SH28]
gi|440714919|ref|ZP_20895488.1| ribosomal biogenesis GTPase [Rhodopirellula baltica SWK14]
gi|32444456|emb|CAD74454.1| predicted GTPase [Rhodopirellula baltica SH 1]
gi|408493951|gb|EKJ98577.1| ribosomal biogenesis GTPase [Rhodopirellula baltica SH28]
gi|436440291|gb|ELP33643.1| ribosomal biogenesis GTPase [Rhodopirellula baltica SWK14]
Length = 326
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 137/342 (40%), Gaps = 92/342 (26%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEK 66
+I+ L VD+V+E+ D+R+P++ N +L ++ + + VL K DL +
Sbjct: 16 EIQAALPKVDVVMEIIDARIPYSSENPMLA-DIRGDKACLKVLTKSDLADP--------- 65
Query: 67 VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
HRTE +
Sbjct: 66 -----------------------------------------HRTEEW------------- 71
Query: 127 KSSIINALRSSHMKKGKAVPI--LPTLQHISD---NMTRYHRTEVYNTTVMVVGVPNVGK 181
++AL SS + ++V +PT++ + M + + N MV+G+PNVGK
Sbjct: 72 ----LDALNSSSSTRARSVTTDDVPTIRRLKSALIGMCPHRKGRSIN--AMVMGIPNVGK 125
Query: 182 SSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
S+IIN L + K P VT+ +V I + +++ DTPG+ P++ N+
Sbjct: 126 STIINFLAGRKVAKTGNTPA-----VTQH-QQRVDIGDGVILW--DTPGMLWPKVHNVSS 177
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKK 301
G RLA +++D + ++ + Y R F+L+ +D + ++ ++
Sbjct: 178 GYRLALIGSIKDTAMDYTDVGFFAARYFMEQYPDRLASRFDLESVADTEMAVIEDIGRRR 237
Query: 302 KWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
R +N V D +RI I+ +R G G + L+
Sbjct: 238 GCLGR-----NNRV----DLERASRILIQEYRTGGLGRLTLE 270
>gi|329767414|ref|ZP_08258939.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
M341]
gi|328836103|gb|EGF85794.1| ribosome biogenesis GTP-binding protein YlqF [Gemella haemolysans
M341]
Length = 292
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
MV+GVPNVGKS+ IN L +KK A K GVT+ +K+++ I +LDTPGI
Sbjct: 124 MVIGVPNVGKSTFINKL----IKKNIA-NTANKPGVTKK-QQWLKLNKD--IELLDTPGI 175
Query: 232 SLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291
+P+ DN E G +L+ +++D + +++ Y++ L + + ++ SDD
Sbjct: 176 LMPKFDNQEIGKKLSLIGSIKDDITPLDDVSLYLIELLKENYLENLNNLYKINVNSDDEN 235
Query: 292 MLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ + + +K++ K D +S ++ I+ FR FG + LD
Sbjct: 236 VFIMEKVAEKRFKKIGGDYDYDS---------TIKLLIQDFRTQKFGLITLD 278
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK VDIV E+ D+R P + N L + V++ + +++ + + E
Sbjct: 10 MAKATREVKEKLKLVDIVFELVDARCPLSSHNMYLDEVVKDKKKIIIFNKID--LCDRAE 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL-QHISDNMTRYHRTEVYNTTV-- 117
+ + + + + V++T+ +N N + K++ + +++ + R + +
Sbjct: 68 TAKWKNYFENKGYT--VVYTDAKNSN--NLNKVIDKAKEELAEKIARQVAKGIKPRAIRS 123
Query: 118 MVVGVPNVGKSSIINAL 134
MV+GVPNVGKS+ IN L
Sbjct: 124 MVIGVPNVGKSTFINKL 140
>gi|225028007|ref|ZP_03717199.1| hypothetical protein EUBHAL_02276 [Eubacterium hallii DSM 3353]
gi|224954721|gb|EEG35930.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium hallii
DSM 3353]
Length = 282
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQVKISEKPLIYILDTP 229
MVVG+PNVGKS+ IN+ GKA G K GVT+ +KI++ + +LDTP
Sbjct: 123 AMVVGIPNVGKSTFINSF------AGKACAKTGNKPGVTKG-KQWIKINKN--VELLDTP 173
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD 289
GI P+ ++ G+RLA ++++ ++ +A + +L ++ V+ +++DE ++
Sbjct: 174 GILWPKFEDQAVGLRLALIGSIKEEILNTTEMAMEFIGFLKKSYPGVLVERYSVDESKEN 233
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+ +L A I R + N D + R+ +E FR G + L+
Sbjct: 234 LEILEEIARI------RGCLMKGNQT----DIDKAGRLLLEDFRSLRLGKLSLE 277
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 77/136 (56%), Gaps = 7/136 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K +DIV+E+ D+R+PF+ +N + + +N + ++VLNK D+ ++K
Sbjct: 10 MTKARRMMQENIKLIDIVVELVDARVPFSSKNPDIDELAKN-KYRLIVLNKADMADAKTT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTV--M 118
+ + + +++V + + K V+ ++ + + R + + N + M
Sbjct: 69 AAWQNYFEAKGFFVAKV--NSQKGAGMKEVKSLIE--KACQEKKARDKKRGILNRPLRAM 124
Query: 119 VVGVPNVGKSSIINAL 134
VVG+PNVGKS+ IN+
Sbjct: 125 VVGIPNVGKSTFINSF 140
>gi|423522332|ref|ZP_17498805.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
gi|401175026|gb|EJQ82229.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
Length = 296
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL++ ++I
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAIYALRFMEKHYPERLKERYNLNDIPEEI 234
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V L AI K R + + D + + + + R G FG + +
Sbjct: 235 VELF--DAIGK---NRGCLMGGGMI----DYDKTSELILRELRGGRFGKMTFE 278
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 82/156 (52%), Gaps = 9/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV-- 117
L ++ + + I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFDERGQKAISINAQ--AGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 124 LIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>gi|377830814|ref|ZP_09813805.1| GTP-binding protein [Lactobacillus mucosae LM1]
gi|377555262|gb|EHT16950.1| GTP-binding protein [Lactobacillus mucosae LM1]
Length = 290
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 141/349 (40%), Gaps = 85/349 (24%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + L+ I + + VDIV E+ D+R+P++ +N + + + +P +L+L K DL + +
Sbjct: 11 MAKALRQIREQMPLVDIVFELVDARVPYSSQNPEVDLAAGD-KPRLLILTKTDLADPE-- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +E ++ + H V+ + R + V K
Sbjct: 68 -VTKEWLQYFKDHGQPVLALDSR---ARSVAKT--------------------------- 96
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V N K + L + K K I M VGVPNVG
Sbjct: 97 -VTNAAKQVLAEKLANEQAKGMKKRAI----------------------RAMCVGVPNVG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N H+ K G + GVT Q + + +LDTPG+ + +
Sbjct: 134 KSTLLN-----HLVKKNVAATGNRPGVT---TGQQWLRSSAELELLDTPGVLWHKFATEK 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYL--NRTGNYR---YVDFFNLDEPSDDIVMLLA 295
G+ LA ++D L + ++A + L YL NR + ++ ++DE D +LL
Sbjct: 186 EGLMLALSGAIKDSLFAKDDVALFALQYLRANRLTELKQRYHLTDADVDESVTDPDLLL- 244
Query: 296 KAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
KK F+ +D S + IF RKG G++ L++
Sbjct: 245 -TVTKKMGFRDDYDRGSERL-----------IF--DLRKGKLGTISLEK 279
>gi|221502951|gb|EEE28661.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 146
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 233 LPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVM 292
LP++ + E ++LAA + DH GE+ +ADYIL++LNR + YVD L P++DI
Sbjct: 2 LPKMKDAEVNLKLAALGCIDDHRAGEMYVADYILYHLNRMRCFTYVDVIGLSRPTNDIQE 61
Query: 293 LLAKAAIKKKWFKRAFDVSSNSVRM--FPDTGEVARIFIEHFRKGSFGSVMLD 343
+ A F A+ + +N R+ PD R F + FR G G LD
Sbjct: 62 VAAHI------FDAAYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKLGFFCLD 108
>gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
gi|156867399|gb|EDO60771.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium leptum
DSM 753]
Length = 289
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 141/346 (40%), Gaps = 75/346 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + I+ LK VD V E+ D+R+P + RN L + ++N +P ++++NK D+ +
Sbjct: 14 MTKTRRKIQASLKLVDAVAEIIDARIPVSSRNPELHKIIEN-KPRIILMNKCDMADPSQT 72
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +KE I +C++ +G+ + +P ++ +
Sbjct: 73 ARWVSCYQKEGVL---AIPVDCKS--GRGLNQFIPKVREL-------------------- 107
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT--VMVVGVPN 178
+ D + ++ + + N T VM+VG+PN
Sbjct: 108 ---------------------------------LKDRIIQWEQKGMVNRTIRVMIVGIPN 134
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS IN M K V + GVTR +Q K +LDTPG+ P+ D+
Sbjct: 135 VGKSSFIN-----RMAKQNRAKVEDRPGVTRG--NQWFTIGKAF-DLLDTPGVLWPKFDD 186
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAA 298
G +LA ++D +V +A +L L + + L++ D+ L
Sbjct: 187 PNVGEKLAFTGAVKDQIVDTEQLASRLLEVLRDEYSAMLAARYKLEKY--DLRPLQGYEL 244
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
++ KR S + DT + + ++ FR G + L++
Sbjct: 245 LELIGRKRGMLASGGEI----DTERASIMVLDEFRSAKLGKITLEQ 286
>gi|401683098|ref|ZP_10814987.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
gi|400183780|gb|EJO18031.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
Length = 283
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 145/349 (41%), Gaps = 91/349 (26%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + +++++K VD V + D+R+P + +N +L + V + +P +L+LNK DL +S
Sbjct: 11 MSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGD-KPKLLILNKADLADSV-- 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++++ QS+ +G+ PTL
Sbjct: 68 -----RIKEWQSYFE-----------SQGI----PTLS---------------------- 85
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
IN+ S +KK ++ R R E T M++G+PN G
Sbjct: 86 ----------INSKEQSAVKKVTDAAKNLMADKLARQKERGIRIETLRT--MIIGIPNAG 133
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS+++N L K VG K GVT+ Q + + ILDTPGI P+ ++
Sbjct: 134 KSTLMNRLAGK-----KIAVVGNKPGVTKG---QQWLKSNKDLEILDTPGILWPKFEDET 185
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNR------TGNYRYVDFFNLDEPSDDIVMLL 294
++LA ++D+L+ + + L Y T ++ +D L + + +++M +
Sbjct: 186 VALKLALTGAIKDNLLPMDEVTIFGLNYFKEHYPEELTARFKQLD---LSQEAPEMIMDM 242
Query: 295 AKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K F+ +D R + IF++ R G G LD
Sbjct: 243 T----QKLGFRDDYD------RFY-------SIFVKDVRDGKLGRYCLD 274
>gi|357050878|ref|ZP_09112074.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
gi|355380503|gb|EHG27639.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
Length = 289
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK VDIV E+ D+R+P + RN +L Q +Q +P ++++NK DL + +
Sbjct: 11 MAKAKREVSEKLKFVDIVFELVDARLPVSSRNPMLDQILQQ-KPRLILINKADLADPQQT 69
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
L E RK Q ++ I + +G++ I+P + + + + R + +
Sbjct: 70 KLWEGYFRK-QGFLAMAINAQ----DSQGIKMIVPKAKEVLQEKIARDKARGLKPRPIRA 124
Query: 118 MVVGVPNVGKSSIINAL 134
MV+G+PNVGKS+++N L
Sbjct: 125 MVIGIPNVGKSTLMNRL 141
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
MV+G+PNVGKS+++N L K G K GVT+ Q + + +LDTPG
Sbjct: 124 AMVIGIPNVGKSTLMNRLVGK-----KIAQTGNKPGVTKG---QQWLRFGTELELLDTPG 175
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D L+ +IA + L + R R ++L +
Sbjct: 176 ILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGLDFFARYYEGRIAQRYSLSAVEEQC 235
Query: 291 VM--LLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ LL K +K+ +K +D S V + R+G G LDR
Sbjct: 236 LAPELLMKIT-EKRGYKDNYDRGSELV-------------VFDIRQGKLGRYTLDR 277
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,215,524,108
Number of Sequences: 23463169
Number of extensions: 205834572
Number of successful extensions: 839010
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 6359
Number of HSP's that attempted gapping in prelim test: 824917
Number of HSP's gapped (non-prelim): 16776
length of query: 352
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 209
effective length of database: 9,003,962,200
effective search space: 1881828099800
effective search space used: 1881828099800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)