BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15351
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTP 229
V +VG PNVGKS+++N L + K + PKAG TR + VK I + I LDTP
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGT-----KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 66
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
GI P + D L M A +L++ AD ILF ++ T +R D
Sbjct: 67 GIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILFMIDATEGWRPRD 109
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTP 229
V +VG PNVGKS+++N L + K + PKAG TR + VK I + I LDTP
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-----KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
GI P + D L M A +L++ AD ILF ++ T +R D
Sbjct: 68 GIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILFMIDATEGWRPRD 110
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
R +KD+ L+ V+ V+EV D+R PF + + S + +++LNK D+ + K
Sbjct: 13 RQIKDL---LRLVNTVVEVRDARAPFATSAYGVDFSRKE---TIILLNKVDIADEKTTKK 66
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS-DNMTRYHRTEVYNTTVMVVG 121
E +K+ VI T+ P +K+L L+ +S D + R V++VG
Sbjct: 67 WVEFFKKQGKR---VITTHKGEP-----RKVL--LKKLSFDRLAR----------VLIVG 106
Query: 122 VPNVGKSSIINALRSSHMKKGKAVP-ILPTLQHIS 155
VPN GKS+IIN L+ A P I +Q S
Sbjct: 107 VPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V++VGVPN GKS+IIN L+ +A VG + G+T+ + S + + ILDTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLKGK-----RASSVGAQPGITKGIQW---FSLENGVKILDTPG 153
Query: 231 ISLPRIDNLECGMRLAACATL 251
I I + + +L +L
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSL 174
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++VG PNVGKS+++N L + +P G TR V+S+ + L I+DT G
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-----GTTRDVISEEIVIRGILFRIVDTAG 300
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLN 270
+ D +E RL TLQ EI AD +LF L+
Sbjct: 301 VRSETNDLVE---RLGIERTLQ-----EIEKADIVLFVLD 332
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
Y+ V +VG PNVGKS+++N L K P+ P+ TR + + + I +
Sbjct: 6 YSGFVAIVGKPNVGKSTLLNNLLGV-----KVAPISPRPQTTRKRLRGILTEGRRQIVFV 60
Query: 227 DTPGISLP 234
DTPG+ P
Sbjct: 61 DTPGLHKP 68
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQ 152
Y+ V +VG PNVGKS+++N L K PI P Q
Sbjct: 6 YSGFVAIVGKPNVGKSTLLNNLLGV-----KVAPISPRPQ 40
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYI 225
+ V++ G PN GKSS++NAL +A V AG TR V+ + + I PL +I
Sbjct: 3 HGXKVVIAGRPNAGKSSLLNALAGR-----EAAIVTDIAGTTRDVLREHIHIDGXPL-HI 56
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
+DT G+ D +E R+ Q EI AD +LF ++ T
Sbjct: 57 IDTAGLREAS-DEVE---RIGIERAWQ-----EIEQADRVLFXVDGT 94
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162
+ V++ G PN GKSS++NAL G+ I+ + + ++ R H
Sbjct: 3 HGXKVVIAGRPNAGKSSLLNAL------AGREAAIVTDIAGTTRDVLREH 46
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V++VG PNVGKSS+ N L +KK AV V GVTR + V +++ ++DT G
Sbjct: 4 VVIVGRPNVGKSSLFNRL----LKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGG 58
Query: 231 ISLPRIDNLECGMRLAACATLQDHLV--------GEINIADY-ILFYLNRTGNYRYVDFF 281
L D E ++ L+D V E+ ADY + YL R G +
Sbjct: 59 --LWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVAT 116
Query: 282 NLDEPSDDIVM 292
+D+P ++ +
Sbjct: 117 KVDDPKHELYL 127
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAV 145
V++VG PNVGKSS+ N L +KK AV
Sbjct: 4 VVIVGRPNVGKSSLFNRL----LKKRSAV 28
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYI 225
+ V++ G PN GKSS++NAL +A V AG TR V+ + + I PL +I
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGR-----EAAIVTDIAGTTRDVLREHIHIDGMPL-HI 56
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
+DT G+ D +E R+ Q EI AD +LF ++ T
Sbjct: 57 IDTAGLREAS-DEVE---RIGIERAWQ-----EIEQADRVLFMVDGT 94
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162
+ V++ G PN GKSS++NAL G+ I+ + + ++ R H
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNAL------AGREAAIVTDIAGTTRDVLREH 46
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTP 229
V++ G PN GKSS++NAL +A V AG TR V+ + + I PL +I+DT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGR-----EAAIVTDIAGTTRDVLREHIHIDGMPL-HIIDTA 63
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
G+ D +E R+ Q EI AD +LF ++ T
Sbjct: 64 GLREAS-DEVE---RIGIERAWQ-----EIEQADRVLFMVDGT 97
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162
V++ G PN GKSS++NAL G+ I+ + + ++ R H
Sbjct: 10 VVIAGRPNAGKSSLLNAL------AGREAAIVTDIAGTTRDVLREH 49
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 153 HISDNMTRYHRTEVYNT--TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
IS + + E+ T V +VG PNVGKSS++NA S +P G TR
Sbjct: 207 EISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP-----GTTRD 261
Query: 211 VM-SQVKISEKPLIYILDTPGI 231
V+ SQ+ + P + +LDT GI
Sbjct: 262 VVESQLVVGGIP-VQVLDTAGI 282
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 99 HISDNMTRYHRTEVYNT--TVMVVGVPNVGKSSIINALRSS 137
IS + + E+ T V +VG PNVGKSS++NA S
Sbjct: 207 EISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 162 HRTEV---YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM---SQV 215
HR V + T+MVVG +GKS++IN+L + + + +P G + R+V S V
Sbjct: 28 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIP-GAAEKIERTVQIEASTV 86
Query: 216 KISEKPL---IYILDTPG 230
+I E+ + + ++DTPG
Sbjct: 87 EIEERGVKLRLTVVDTPG 104
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 108 HRTEV---YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
HR V + T+MVVG +GKS++IN+L + + + +P
Sbjct: 28 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIP 69
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM---SQVKISEKPL- 222
+ T+MVVG +GKS++IN+L + + + +P G + R+V S V+I E+ +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIP-GAAEKIERTVQIEASTVEIEERGVK 62
Query: 223 --IYILDTPG 230
+ ++DTPG
Sbjct: 63 LRLTVVDTPG 72
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
+ T+MVVG +GKS++IN+L + + + +P
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIP 37
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
TV++VG PNVGKS++ N L +KK KA+ V + GVTR + ++DT
Sbjct: 2 ATVLIVGRPNVGKSTLFNKL----VKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLVDT 56
Query: 229 PGI 231
G+
Sbjct: 57 CGV 59
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTP 229
V +VG PNVGKS++ NA+ + K +A+ V P G TR V +V I + +++ DT
Sbjct: 183 VAIVGRPNVGKSTLFNAI----LNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFV-DTA 236
Query: 230 GI 231
G+
Sbjct: 237 GL 238
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
TV++VG PNVGKS++ N L +KK KA+
Sbjct: 2 ATVLIVGRPNVGKSTLFNKL----VKKKKAI 28
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V +VG PNVGKS++ NA+
Sbjct: 183 VAIVGRPNVGKSTLFNAI 200
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 146 PILPTLQHISDNMTRYHRTEV---YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG 202
P P ++ + HR V + T+ VVG +GKS++IN+L + + + +P G
Sbjct: 12 PETPGYVGFANLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIP-G 70
Query: 203 PKAGVTRSVM---SQVKISEKPL---IYILDTPG 230
+ R+V S V+I E+ + + ++DTPG
Sbjct: 71 AAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISE---K 220
+ T+MVVG +GKS++IN+L + + P GP + ++V S+V I E +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDL-YSPEYP-GPSHRIKKTVQVEQSKVLIKEGGVQ 87
Query: 221 PLIYILDTPGISLPRIDNLEC 241
L+ I+DTPG +DN C
Sbjct: 88 LLLTIVDTPGFG-DAVDNSNC 107
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISE---K 220
+ T+MVVG +GKS++IN+L + + + GP + ++V S+V I E +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--PGPSHRIKKTVQVEQSKVLIKEGGVQ 59
Query: 221 PLIYILDTPGISLPRIDNLEC 241
L+ I+DTPG +DN C
Sbjct: 60 LLLTIVDTPGFG-DAVDNSNC 79
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 170 TVMVVGVPNVGKSSIINALRS--SHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
TV +VG PNVGK++I NAL H+ V V K G+ + + + P IY L
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 228 TPGIS 232
I
Sbjct: 65 AHSID 69
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
TV +VG PNVGK++I NAL
Sbjct: 5 TVALVGNPNVGKTTIFNAL 23
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 14 NVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH 73
N D+++++ DS L+ ++ ++LVLNK DL+ K + +K+RKE
Sbjct: 81 NADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG- 139
Query: 74 ISEVIFTNCRNPNCKGVQKI 93
VI TN + +GV+++
Sbjct: 140 -VPVIPTNAK--KGEGVEEL 156
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISE---K 220
+ T+MVVG +GKS++IN+L + + + GP + ++V S+V I E +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--PGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 221 PLIYILDTPGISLPRIDNLEC 241
L+ I+DTPG +DN C
Sbjct: 65 LLLTIVDTPGFG-DAVDNSNC 84
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEKPLIYILDTP 229
V +VG PN GKSS++ A+ +H K + P T S + V++SE+ + D P
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPK------IAPYPFTTLSPNLGVVEVSEEERFTLADIP 213
Query: 230 GI 231
GI
Sbjct: 214 GI 215
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMK 140
V +VG PN GKSS++ A+ +H K
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPK 183
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
+ ++ G PN GKS+++N L + + +A+ V G TR + + I +K + + D
Sbjct: 233 GVSTVIAGKPNAGKSTLLNTL----LGQERAI-VSHMPGTTRDYIEECFIHDKTMFRLTD 287
Query: 228 TPGI 231
T G+
Sbjct: 288 TAGL 291
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
T +++G PN GK+++ NAL +++ + VG GVT + + + LI I D
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQR------VGNWPGVTVEKKTGEFLLGEHLIEITDL 55
Query: 229 PGI 231
PG+
Sbjct: 56 PGV 58
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKG 142
T +++G PN GK+++ NAL +++ + G
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQRVG 29
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVT 208
T + + + + + ++ + TV+V+G VGKSS +N+L + V V P +A
Sbjct: 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV-----VRVSPFQAEGL 72
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECG-MRLAACATLQDHLVGEINIADYILF 267
R VM + I I+DTPG+ +E G + A ++ LV N +L
Sbjct: 73 RPVMVSRTMG-GFTINIIDTPGL-------VEAGYVNHQALELIKGFLV---NRTIDVLL 121
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
Y++R +D + +DE +V+ + + K+ W K
Sbjct: 122 YVDR------LDVYRVDELDKQVVIAITQTFGKEIWCK 153
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVT 208
T + + + + + ++ + TV+V+G VGKSS +N+L + V V P +A
Sbjct: 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV-----VRVSPFQAEGL 72
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECG-MRLAACATLQDHLVGEINIADYILF 267
R VM + I I+DTPG+ +E G + A ++ LV N +L
Sbjct: 73 RPVMVS-RTMGGFTINIIDTPGL-------VEAGYVNHQALELIKGFLV---NRTIDVLL 121
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
Y++R +D + +DE +V+ + + K+ W K
Sbjct: 122 YVDR------LDVYRVDELDKQVVIAITQTFGKEIWCK 153
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVT 208
T + + + + + ++ + TV+V+G VGKSS +N+L + V V P +A
Sbjct: 17 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV-----VRVSPFQAEGL 71
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECG-MRLAACATLQDHLVGEINIADYILF 267
R VM + I I+DTPG+ +E G + A ++ LV N +L
Sbjct: 72 RPVMVS-RTMGGFTINIIDTPGL-------VEAGYVNHQALELIKGFLV---NRTIDVLL 120
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
Y++R +D + +DE +V+ + + K+ W K
Sbjct: 121 YVDR------LDVYAVDELDKQVVIAITQTFGKEIWCK 152
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG NVGKS+ IN + KG + G T M ++ + +Y DTPG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD-MIEIPLESGATLY--DTPG 221
Query: 231 I 231
I
Sbjct: 222 I 222
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 44 PMVLVLNKRDLI--NSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101
P++LV NK DL+ + K+ L+ +R+ + C KG+ + +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRW-MRRMAEELGLCPVDVCLVSAAKGI-----GMAKVM 153
Query: 102 DNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
+ + RY V VVG NVGKS+ IN + KG +
Sbjct: 154 EAINRYRE----GGDVYVVGCTNVGKSTFINRIIEEATGKGNVI 193
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVT 208
T + + + + + ++ + TV+V+G VGKSS +N+L + V V P +A
Sbjct: 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV-----VRVSPFQAEGL 72
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECG-MRLAACATLQDHLVGEINIADYILF 267
R VM + I I+DTPG+ +E G + A ++ LV N +L
Sbjct: 73 RPVMVS-RTMGGFTINIIDTPGL-------VEAGYVNHQALELIKGFLV---NRTIDVLL 121
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFK 305
Y++R +D + +DE +V+ + + K+ W K
Sbjct: 122 YVDR------LDVYAVDELDKQVVIAITQTFGKEIWCK 153
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
TV ++G PN GK+++ N L + + G V V K G+ + QV + + P Y L
Sbjct: 5 TVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLT 64
Query: 228 T 228
T
Sbjct: 65 T 65
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 162 HRTEV---YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM---SQV 215
HR V + T+ VVG +GKS++IN+L + + + + G + R+V S V
Sbjct: 9 HRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIS-GAAEKIERTVQIEASTV 67
Query: 216 KISEKPL---IYILDTPG 230
+I E+ + + ++DTPG
Sbjct: 68 EIEERGVKLRLTVVDTPG 85
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 167 YNTTVM---VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLI 223
YN V+ ++G PNVGKSS++NA+ + V V AG TR + +
Sbjct: 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGE-----ERVIVSNVAGTTRDAVDTSFTYNQQEF 245
Query: 224 YILDTPGI 231
I+DT G+
Sbjct: 246 VIVDTAGM 253
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIY---ILD 227
V +VG PNVGKS+I N + + + P GVTR ++ S + L Y ++D
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTP-----GVTR---DRIYSSAEWLNYDFNLID 77
Query: 228 TPGISL 233
T GI +
Sbjct: 78 TGGIDI 83
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 3/25 (12%)
Query: 113 YNTTVM---VVGVPNVGKSSIINAL 134
YN V+ ++G PNVGKSS++NA+
Sbjct: 191 YNEEVIQFCLIGRPNVGKSSLVNAM 215
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 173 VVGVPNVGKSSIINAL-----RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYI 225
++G+P G + +AL RS + +G +PV P +TR+ + +S+K L I
Sbjct: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK-GLSDKQLAEISA 136
Query: 226 LDTPGISLPRIDNLECGM-RLAACATLQDHL 255
L P I P + GM ++ A LQD L
Sbjct: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDAL 167
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 173 VVGVPNVGKSSIINAL-----RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYI 225
++G+P G + +AL RS + +G +PV P +TR+ + +S+K L I
Sbjct: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK-GLSDKQLAEISA 136
Query: 226 LDTPGISLPRIDNLECGM-RLAACATLQDHL 255
L P I P + GM ++ A LQD L
Sbjct: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDAL 167
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 167 YNTTVMVVGVPNVGKSSIINAL-------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISE 219
++ +MVVG +GKS+++N L ++S + + +P + V+ + +
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM 60
Query: 220 KPLIYILDTPGISLPRIDNLECGMRLAACATLQ--DHLVGEINIA 262
K + ++DTPG +I+N C + Q L E+NIA
Sbjct: 61 K--LTVIDTPGFG-DQINNENCWEPIEKYINEQYEKFLKEEVNIA 102
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVTRSVMSQVKISEKPLIYI 225
Y + +VG PNVGKS+++N L G+ + + KA TR + +
Sbjct: 4 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQTTRHRIVGIHTEGAYQAIY 57
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQD 253
+DTPG+ + + M AA +++ D
Sbjct: 58 VDTPGLHMEEKRAINRLMNKAASSSIGD 85
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVTRSVMSQVKISEKPLIYI 225
Y + +VG PNVGKS+++N L G+ + + KA TR + +
Sbjct: 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQTTRHRIVGIHTEGAYQAIY 60
Query: 226 LDTPGISLPRIDNLECGMRLAACATLQD 253
+DTPG+ + + M AA +++ D
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAASSSIGD 88
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
T+ ++G PN GK+++ N L S + G V V K G + QV + + P Y L
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 228 T 228
T
Sbjct: 65 T 65
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
T++ G NVGKS++I L +++GK + GVTR ++ + K I+D
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK------RPGVTRKIIEIEWKNHK----IIDX 51
Query: 229 PGISL 233
PG
Sbjct: 52 PGFGF 56
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
T+ ++G PN GK+++ N L S + G V V K G + QV + + P Y L
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 228 T 228
T
Sbjct: 65 T 65
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKG--KAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
T+ ++G PN GK+++ N L S + G V V K G + QV + + P Y L
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 228 T 228
T
Sbjct: 65 T 65
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 167 YNTTVM---VVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLI 223
YN V+ ++G PNVGKSS++NA V V AG TR + +
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAXLGEER-----VIVSNVAGTTRDAVDTSFTYNQQEF 225
Query: 224 YILDTPG 230
I+DT G
Sbjct: 226 VIVDTAG 232
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIY---ILD 227
V +VG PNVGKS+I N + + + P GVTR ++ S + L Y ++D
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTP-----GVTR---DRIYSSAEWLNYDFNLID 57
Query: 228 TPGISL 233
T GI +
Sbjct: 58 TGGIDI 63
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGK--AVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
+ ++G PNVGKS+I NAL ++ G V V K G + K+ + P +Y L
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIG 32
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGK--AVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
+ ++G PNVGKS+I NAL ++ G V V K G + K+ + P +Y L
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIG 31
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V ++G + GK+S++ +RS+ + G+A G+T+ + + +E +I LDTPG
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEA------GGITQHIGAYHVETENGMITFLDTPG 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGK--AVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
+ ++G PNVGKS+I NAL ++ G V V K G + K+ + P +Y L
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIG 31
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGK--AVPVGPKAGVTRSVMSQVKISEKPLIYIL 226
+ ++G PNVGKS+I NAL ++ G V V K G + K+ + P +Y L
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIG 35
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 47/165 (28%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILP-------TLQHISDNMTRYHRTEVYNT 169
V + GVP VGKS+ I AL +++G V +L T I + TR R V+
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVH-- 139
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
PN +R S G GVTR+ + + +L+
Sbjct: 140 -------PNA-------YIRPSPTS-------GTLGGVTRAT--------RETVVLLEAA 170
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN 274
G + I+ + G A A + D ++L L RTG+
Sbjct: 171 GFDVILIETVGVGQSEVAVANMVD---------TFVLLTLARTGD 206
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V +VG+PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 170 TVMVVGVPNVGKSSIINAL 188
V +VG+PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V +VG+PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 170 TVMVVGVPNVGKSSIINAL 188
V +VG+PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
K K+ G A + + + ++ +PL+Y++ T SL R+DNL
Sbjct: 563 KQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNL 607
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 195 KGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
K K+ G A + + + ++ +PL+Y++ T SL R+DNL
Sbjct: 568 KQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNL 612
>pdb|3GV2|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|B Chain B, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|C Chain C, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|D Chain D, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|E Chain E, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|F Chain F, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 342
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 52 RDLINSKHESLIEEKVRKE-QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYH-- 108
RD ++ +++L E+ +E ++ +E + NP+CK + K L + + MT
Sbjct: 162 RDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGV 221
Query: 109 ---RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTE 165
R E+ + V + +G I+ A + M K + I+ ++ S T R +
Sbjct: 222 GGTRPELMSAQSAVGSIETIGFPGILAA--ADAMVKAGRITIVGYIRAGSARFTLNIRGD 279
Query: 166 VYNT-TVMVVGVPNVGKS 182
V T M G+ + ++
Sbjct: 280 VQEVKTAMAAGIDAINRT 297
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
V + GVP VGKS+ I+AL S G V +L
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 119 VVGVPNVGKSSIINALRSSHMK 140
+VG+PNVGKS++ NAL + ++
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIE 28
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 173 VVGVPNVGKSSIINALRSSHMK 194
+VG+PNVGKS++ NAL + ++
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIE 28
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
V + GVP VGKS+ I+AL S G V +L
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VG NVGKSS++NAL + K V G TRS+ + S+ Y +D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNR-----KIAFVSKTPGKTRSINFYLVNSK---YYFVDLPG 77
Query: 231 ISLPRIDNLECGMRLAACATLQDHL 255
++ E R+ ++D+
Sbjct: 78 YGYAKVSKKE---RMLWKRLVEDYF 99
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric
Lkb1-Stradalpha-Mo25alpha Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric
Lkb1-Stradalpha-Mo25alpha Complex
Length = 341
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 26 MPFT-GRNHLLQQS-VQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIF-TNC 82
MPF G++H V+N++ + VL K+D+ + K E EE V K + E+++ TN
Sbjct: 1 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEE-VSKNLVAMKEILYGTNE 59
Query: 83 RNPNCKGVQKILPTL 97
+ P + V ++ L
Sbjct: 60 KEPQTEAVAQLAQEL 74
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 171 VMVVGVPNVGKSSIINALRSS--HMKKGKAVPVGPKAGV 207
V + G PNVGK+S+ NAL + ++ V V K GV
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 171 VMVVGVPNVGKSSIINALRSS--HMKKGKAVPVGPKAGV 207
V + G PNVGK+S+ NAL + ++ V V K GV
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPLIYILDTP 229
V ++G + GK+++++A+R S + + +A G+T+ + + QV +++K + + LDTP
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEA------GGITQHIGAYQVTVNDKKITF-LDTP 63
Query: 230 G 230
G
Sbjct: 64 G 64
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 171 VMVVGVPNVGKSSIINALRSS--HMKKGKAVPVGPKAGV 207
V + G PNVGK+S+ NAL + ++ V V K GV
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 203 PKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGM-RLA 246
P AG+ + K K L+ ++DTPGI L + E G RLA
Sbjct: 18 PAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLA 62
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 116 TVMVVGVPNVGKSSIINALRSS 137
TV++ G PNVGKS+++ AL ++
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTA 190
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 170 TVMVVGVPNVGKSSIINALRSS 191
TV++ G PNVGKS+++ AL ++
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTA 190
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
+ +VG+PNVGKS+ N L +S
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQ 46
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
+ +VG+PNVGKS+ N L +S
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQ 46
>pdb|2ONT|A Chain A, A Swapped Dimer Of The Hiv-1 Capsid C-terminal Domain
Length = 76
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 52 RDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105
RD ++ +++L E+ ++ ++ ++E + NP+CK + K L + + MT
Sbjct: 18 RDYVDRFYKTLRAEQSQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMT 71
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
V + GVP VGKS+ I AL ++ G V +L
Sbjct: 60 VGITGVPGVGKSTTIEALGMHLIEAGHRVAVL 91
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
V + GVP VGKS+ I AL +++G V +L
Sbjct: 59 VGITGVPGVGKSTSIEALGMHLIEQGHRVAVL 90
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 11 HLKNVDIVIEVHDSRMPFTGR---NHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKV 67
H+ NVD VI V +MP T + L + +N V+V+NK DL + + E +
Sbjct: 81 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRE-L 139
Query: 68 RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGK 127
+ S + ++ T+ + G++++ L+ M G+ VGK
Sbjct: 140 EEIYSGLYPIVKTSAKTG--MGIEELKEYLKGKISTMA---------------GLSGVGK 182
Query: 128 SSIINAL 134
SS++NA+
Sbjct: 183 SSLLNAI 189
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGK--AVPVGPKAGVTRSVMSQVKISEKPLIY 224
T + ++G PN GK+S+ N + + + G V V K+G+ + ++I + P IY
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKK-NKDLEIQDLPGIY 60
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ESLIEEKVR 68
+V+ D RM T R H+L +R +V+ +NK D+++ + L+E +VR
Sbjct: 104 LVVSAADGRMRQT-REHILLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVR 155
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 303 WFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
WF RA +SS V + PD R +EH R+ + ++DR
Sbjct: 73 WFARAISISSRVVXIDPD-----RDNVEHARRXLHDNGLIDR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,865,846
Number of Sequences: 62578
Number of extensions: 383996
Number of successful extensions: 1466
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 186
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)