BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15351
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17EJ1|MTG1_AEDAE Mitochondrial GTPase 1 OS=Aedes aegypti GN=AAEL003813 PE=3 SV=1
Length = 316
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 196/347 (56%), Gaps = 59/347 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
MG+G+K +++ LK VD VIEVHD+R+P +GRN + ++ ++P +LVLNK+D I+ + +
Sbjct: 24 MGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKDKIDRRLQ 83
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ +++++E S ++FTNC++ +C
Sbjct: 84 GRVVDRLQQEDSEARHILFTNCKDQSC--------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N +R ++P Q + + R++R + +M++GVPNVG
Sbjct: 111 -----------NGIRK----------VMPLAQDLILSSNRFNRADQKEYCIMIIGVPNVG 149
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN LR+ H+ K A VG AG+TRSV++++KISE PL+Y+LDTPGI P I + E
Sbjct: 150 KSSLINVLRNRHLNKKGASQVGAVAGITRSVLNKIKISEDPLVYLLDTPGILKPNIADTE 209
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI--VMLLAKAA 298
G+RLA + LQDHLVGE IADY+L+ LN+ GN++YV+ L EP+D I V++
Sbjct: 210 TGLRLALVSCLQDHLVGEELIADYLLYLLNKRGNFKYVELMGLKEPTDSIAEVLIAGSKH 269
Query: 299 IKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRD 345
+ K R +D S + PD AR I+ FR G+FG +++D D
Sbjct: 270 LDKTVRVRHYD---GSFVIRPDAMLAARHMIKAFRTGAFGKILIDDD 313
>sp|Q8R2R6|MTG1_MOUSE Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2
Length = 326
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 193/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK+VD VIEVHD+R+PF+GRN L Q+ + ++P +LVLNK DL + +
Sbjct: 34 MAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELL-GLKPHLLVLNKMDLADLTEQ 92
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ E+ +S V+FT
Sbjct: 93 QKIVQRL--EEKGLSNVLFT---------------------------------------- 110
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MVVGVPNVG
Sbjct: 111 -----------NCVKDENIKQ-----IVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVG 154
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++ GKA VG + G+TR+V S++++ E+PL+++LDTPG+ PRI+++E
Sbjct: 155 KSSLINSLRRQHLRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVE 214
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LNR G + YV + L D I +L AIK
Sbjct: 215 TGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYALASACDQIEWVLKNVAIK 274
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
+K K + +V + PD AR F+ FR G G VMLDRD +
Sbjct: 275 LRKTRKVKVLTGTGNVNVIQPDYAMAARDFLRTFRSGLLGQVMLDRDII 323
>sp|Q4PS77|MTG1_BOVIN Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2
Length = 332
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 61/350 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ L+ VD +IEVHD+++P +GRN L Q+++ ++P +LVLNK DL + K +
Sbjct: 35 MAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLKEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + +E I V+FT
Sbjct: 94 QKIIQHLEREG--IKHVVFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ ++PT+ + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----VIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++ E+PL+++LDTPG+ PRI ++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +AD++L+ LNR YV + L E DDI +L + A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETLADFLLYTLNRHQLSGYVQHYGLGEACDDIASVLKRVAVK 275
Query: 301 -KKWFKRAFDVSSNSVRMF-PDTGEVARIFIEHFRKGSFGSVMLDRDFLE 348
+K K + +V + PD AR F+ FR G G VMLDRD L+
Sbjct: 276 LRKTQKVKVLTGTGNVNVIQPDYPAAARDFLRAFRSGLLGPVMLDRDLLQ 325
>sp|E3TDS3|MTG1_ICTPU Mitochondrial GTPase 1 OS=Ictalurus punctatus GN=mtg1 PE=2 SV=1
Length = 320
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 203/346 (58%), Gaps = 61/346 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK + + VD VIE+HD+R+PF+GRN L Q+++ ++RP +L+LNK DL ++ +
Sbjct: 33 MAKGLKQMRASPRKVDCVIEIHDARIPFSGRNPLFQENL-DVRPHLLILNKMDLADTSDK 91
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ ++ GV+ +L ++D + +
Sbjct: 92 MSILKQLERD------------------GVKNVL-----LTDCLKQ-------------- 114
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
R + +KK I+P + + +N R+HR E + +MV+GVPNVG
Sbjct: 115 --------------RDTSVKK-----IIPLVTDLIENAPRFHREENRSYCLMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+INA+R +++KKGKA VG + G+T++V++++++ E+P+I++LDTPG+ P+I+N+E
Sbjct: 156 KSSLINAIRRTNLKKGKASRVGGEPGITKAVLTKIQVCERPVIHLLDTPGVLPPKIENIE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAI- 299
GM+LA C T+ DHLVGE IADY+LF LNR + YV+ ++L+ PSDDI +L A+
Sbjct: 216 TGMKLALCGTILDHLVGEDIIADYLLFSLNRPQRFGYVERYDLETPSDDIQHVLKCIAVK 275
Query: 300 --KKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
K + K V +VRM P+ A FI FRKG G VMLD
Sbjct: 276 LGKTQRVKAITGVGDITVRM-PNYTAAAYDFIRAFRKGELGKVMLD 320
>sp|Q9BT17|MTG1_HUMAN Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2
Length = 334
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 61/349 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LK VD +IEVHD+R+P +GRN L Q+++ ++P +LVLNK DL + +
Sbjct: 35 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETL-GLKPHLLVLNKMDLADLTEQ 93
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I + + E + VIFT
Sbjct: 94 QKIMQHLEGEG--LKNVIFT---------------------------------------- 111
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
N ++ ++K+ I+P + + RYHR E +MV+GVPNVG
Sbjct: 112 -----------NCVKDENVKQ-----IIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVG 155
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSS+IN+LR H++KGKA VG + G+TR+VMS++++SE+PL+++LDTPG+ PRI+++E
Sbjct: 156 KSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVE 215
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G++LA C T+ DHLVGE +ADY+L+ LN+ + YV + L D++ +L A+K
Sbjct: 216 TGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVK 275
Query: 301 --KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDRDFL 347
K + + N + P+ AR F++ FR+G GSVMLD D L
Sbjct: 276 LGKTQKVKVLTGTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLDLDVL 324
>sp|Q29AU5|MTG1_DROPS Mitochondrial GTPase 1 OS=Drosophila pseudoobscura pseudoobscura
GN=GA14342 PE=3 SV=2
Length = 320
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 185/346 (53%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HDSR+P GRN ++ ++P +LVLNK DL+ K
Sbjct: 27 MNKGMRQIQQKLRNVDCIVEIHDSRIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGPK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK R H
Sbjct: 87 QQRSVLQQLRRQQPELKNILFTN-----CKD---------------QRNH---------- 116
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
GV + ILP + + +RY+R + +M++GVPN
Sbjct: 117 --GV----------------------LDILPLATQLVGDSSRYNRAQSAEHNIMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSSIIN LR+ H+KK A VG +AGVTR+V ++KI EKP +Y++DTPGI P + +
Sbjct: 153 VGKSSIINVLRNVHLKKRSAARVGAEAGVTRAVGERIKIQEKPAVYMIDTPGILQPSVTD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN+ Y YV+ +L PSD+I +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNKHRRYEYVEKLSLSSGPSDNISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A F R V + + AR FI+ FR G GS+ LD
Sbjct: 273 AQTHGMFHRVKQYDG-QVEVMTNLLAAARKFIQFFRTGQLGSINLD 317
>sp|Q9VCU5|MTG1_DROME Mitochondrial GTPase 1 OS=Drosophila melanogaster GN=CG17141 PE=1
SV=2
Length = 323
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 181/346 (52%), Gaps = 58/346 (16%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSK 58
M +G++ I++ L+NVD ++E+HD+R+P GRN ++ ++P +LVLNK DL+ +K
Sbjct: 27 MTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAK 86
Query: 59 HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVM 118
+ + +++R++Q + ++FTN CK
Sbjct: 87 QQKSVLQQLRRQQPELQHILFTN-----CKD----------------------------- 112
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 178
+ + ILP + +R++RT+ +M++GVPN
Sbjct: 113 --------------------QRNNGVLDILPLATRLVSESSRFNRTQAAEHNLMIIGVPN 152
Query: 179 VGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDN 238
VGKSS+IN LR+ H+KK A VG +AG+TRSV ++KI E P +Y++DTPGI P I +
Sbjct: 153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKD 212
Query: 239 LECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDE-PSDDIVMLLAKA 297
E GM+LA L DH+VGE IADY+L++LN Y YV+ L PSDDI +LA+
Sbjct: 213 DEMGMKLALVGCLPDHIVGEDLIADYLLYWLNSHRKYDYVEMLKLSSGPSDDISAVLAEY 272
Query: 298 AIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
A +++ F + V + + AR FI FR G G + LD
Sbjct: 273 AHREELFHKVKQYDGR-VEVMTNLLAAARKFIHFFRSGQLGHMNLD 317
>sp|A9JTX2|MTG1_XENTR Mitochondrial GTPase 1 OS=Xenopus tropicalis GN=mtg1 PE=2 SV=1
Length = 311
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 147 ILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
++P + + R+HR E T +MV+GVPNVGKSS+INALR H++KGKA VG + G
Sbjct: 113 VVPVISELVGCSQRFHREENTETCIMVIGVPNVGKSSLINALRRMHLRKGKASRVGAEPG 172
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
+TRSV++++++SE PLI++ DTPG+ PRI+++E GM+LA C T+ DHLVGE +ADY+L
Sbjct: 173 ITRSVLTKIQVSESPLIFLFDTPGVLSPRIESVETGMKLALCGTILDHLVGEDIMADYLL 232
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK--KKWFKRAFDVSSNSVRMFPDTGEV 324
+ LN+ +RYV+ + L++P DI LL + A+K K +A + P+
Sbjct: 233 YILNQQMQHRYVEHYGLEKPCADIETLLKRIALKLGKTQKVKAITGVGDVNITVPNYNAA 292
Query: 325 ARIFIEHFRKGSFGSVMLD 343
A FI FR+G G VMLD
Sbjct: 293 AYDFIRTFRRGQLGVVMLD 311
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 95/144 (65%), Gaps = 5/144 (3%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M +GLK ++ LKN+D ++EVHD+R+P +GRN + Q S+ ++P +L+LNK DL + +
Sbjct: 26 MAKGLKQMKTKLKNLDCIVEVHDARIPLSGRNPIFQDSL-GMKPHLLILNKMDLADLTQK 84
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
I +++ Q + VIFT+C + ++ ++P + + R+HR E T +MV+
Sbjct: 85 KRILAQLK--QQGVGNVIFTDCVKD--QNIKHVVPVISELVGCSQRFHREENTETCIMVI 140
Query: 121 GVPNVGKSSIINALRSSHMKKGKA 144
GVPNVGKSS+INALR H++KGKA
Sbjct: 141 GVPNVGKSSLINALRRMHLRKGKA 164
>sp|O74776|MTG1_SCHPO Mitochondrial GTPase 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mtg1 PE=3 SV=1
Length = 328
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 155/344 (45%), Gaps = 59/344 (17%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + LK ++ + DI +EV D+R+P T RN++++ + N + ++V NK DL ++ H
Sbjct: 22 MNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFL-NKKNRIIVYNKCDLADTFH- 79
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ KV K + +Q + Q++ + T + +
Sbjct: 80 --TKAKVSKHR------------------IQNLAQQFQNVE---CWFKETSTPEKSAFIT 116
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
P V K+ A +L ++ + D + R VY VG+PN G
Sbjct: 117 --PYVSKAPYF------------AKELLRLIRTLVDQASANGRVYVY-----FVGMPNTG 157
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KSSI+N+LR+ ++K K+ VG GVT+ + V++ +Y+LDTPGI P I E
Sbjct: 158 KSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPE 217
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
++L+ +++ +V + + DY+LF+LNR Y + P++D+ L A K
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKW---SLPTNDVDEFLQNTAYK 274
Query: 301 -KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
+K K F D V+ I+ +R G G LD
Sbjct: 275 ARKLTKGGF-----------DENFVSNYVIQQYRIGRLGRFQLD 307
>sp|B6JW87|MTG1_SCHJY Mitochondrial GTPase 1 OS=Schizosaccharomyces japonicus (strain
yFS275 / FY16936) GN=mtg1 PE=3 SV=1
Length = 328
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG+PNVGKSS++NALR + + + K VG GVTR+V V++ E +Y++DTPG
Sbjct: 136 VFVVGMPNVGKSSVMNALRHASLHRRKVAVVGSHPGVTRNVGEVVRLFEGKNVYMVDTPG 195
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I LP I E ++ A ++D + + DY+L+ LN Y L P++D+
Sbjct: 196 IMLPTILQPEDAIKFALVHAMKDGRLHNAVVVDYLLYRLNLIDPNTYT---RLSSPTNDV 252
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
L AA+ + V+ + +A ++ +R G FG+ +LD
Sbjct: 253 STFLHNAAVHTGKLGKGGTVNDDL---------IASYVLQLYRTGFFGAFVLD 296
>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=rbgA PE=3 SV=1
Length = 283
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 65/301 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D +S
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKADKADSSVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
++ E+ I + + N +G+ +ILP +
Sbjct: 69 KAWKQHF--EKDGIPTLAINSV---NGQGLNQILPASKE--------------------- 102
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
L K KA + P R R ++VG+PNVG
Sbjct: 103 -------------LLKEKFDKMKAKGVKP----------RAIRA-------LIVGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + GVT + VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGVT-TAQQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLAA ++D ++ ++A Y L +L R ++L+E ++I L + K
Sbjct: 185 VGLRLAATGAIKDSIINLQDVAVYGLRFLEENYPERLKKRYDLEEIPEEIAALFDEIGKK 244
Query: 301 K 301
+
Sbjct: 245 R 245
>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168)
GN=rbgA PE=1 SV=1
Length = 282
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELF 238
>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp. spizizenii
(strain ATCC 23059 / NRRL B-14472 / W23) GN=rbgA PE=3
SV=1
Length = 282
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 65/294 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D K +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKAD----KAD 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+ + ++ KE + + + N +G+ +I+P + I
Sbjct: 65 AAVTQQW-KEHFENQGIRSLSINSVNGQGLNQIVPASKEI-------------------- 103
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
LQ D M R + +++G+PNVG
Sbjct: 104 ------------------------------LQEKFDRM-RAKGVKPRAIRALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L ++ K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G+RLA ++D ++ ++A + L +L R + + LDE +DI L
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYALDEIPEDIAELF 238
>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM
319) GN=rbgA PE=3 SV=1
Length = 288
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 136/295 (46%), Gaps = 66/295 (22%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK-H 59
M + + + + LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D + +
Sbjct: 10 MAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVN-KPRIVLLNKVDKADPRVT 68
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ ++ KEQ + I KG+++I+ + + + ++ R
Sbjct: 69 QQWLD--YYKEQGIYALAIDAQA----GKGMKQIVSSSKELLQE--KFDR---------- 110
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+R+ +KK +A+ M+VG+PNV
Sbjct: 111 --------------MRAKGVKKPRAI------------------------RAMIVGIPNV 132
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKS++IN L S + K G + GVT++ +K+ + + +LDTPGI P+ ++
Sbjct: 133 GKSTLINRLASKKIAK-----TGDRPGVTQA-QQWIKVGNE--LELLDTPGILWPKFEDE 184
Query: 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLL 294
G +LA ++D ++ ++A Y L +L + +NL+E +DIV L
Sbjct: 185 TVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQRYNLNEIPEDIVELF 239
>sp|Q03151|MTG1_YEAST Mitochondrial GTPase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MTG1 PE=1 SV=1
Length = 367
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 63/311 (20%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPM--VLVLNKRDLINSKHE 60
+ LK EK L ++++IE+ D R P + RN + + + + ++V ++DL+
Sbjct: 40 KALKTFEKLLPQMNMIIELRDIRAPLSTRNVVFDRIARKEHDVMKLVVYTRKDLMPGNKP 99
Query: 61 SLIEEKVRKEQSHISE-VIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ K++ + E I +CRN V+ +L L+ + + ++
Sbjct: 100 YI--GKLKNWHEELGEKFILLDCRNKT--DVRNLLKILEWQNYELETNGGYLPMGYRALI 155
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
G+PNVGKS++IN+LR T+ H NM R
Sbjct: 156 TGMPNVGKSTLINSLR--------------TIFHNQVNMGR------------------- 182
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-----IYILDTPGISLP 234
K K G +AGVTR+ ++++ + IY++DTPGI +P
Sbjct: 183 --------------KFKKVAKTGAEAGVTRATSEVIRVTSRNTESRNEIYLIDTPGIGVP 228
Query: 235 -RIDNLECGMRLAACATLQDHLVGEINIADYILFYLN-RTGNYRYVDFF--NLDEPSDDI 290
R+ + + LA C +++++LV I ADY+L+ +N + N + + + + P++DI
Sbjct: 229 GRVSDHNRMLGLALCGSVKNNLVDPIFQADYLLYLMNLQNLNDGRTELYPGSTNSPTNDI 288
Query: 291 VMLLAKAAIKK 301
+L + + K
Sbjct: 289 YDVLRRLQVNK 299
>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70)
GN=rbgA PE=3 SV=1
Length = 283
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G K GVT++ +K+ ++ + +LDTPG
Sbjct: 126 ALIVGIPNVGKSTLINRLAGRNIAK-----TGDKPGVTKA-QQWIKVGKE--MELLDTPG 177
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G++LA ++D ++ ++A Y L +L + R + ++LD+ +I
Sbjct: 178 ILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPERLKERYSLDDIPGEI 237
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLD 343
V L AI K +R VS +V D +V+ I + R G + +
Sbjct: 238 VALF--DAIGK---RRGCLVSGGAV----DYDKVSEIVLHDIRTEKLGRLSFE 281
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 80/145 (55%), Gaps = 10/145 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++++ LK +DIV E+ D+R+P + RN ++ + + N +P +++LNK D+ + E
Sbjct: 12 MAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGN-KPRIVLLNKADMAD---E 67
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH-ISDNMTRYHRTEVYNTTVM- 118
++ E+ + + + + + G+++I+ + + D + + N M
Sbjct: 68 TVTEQWIAYFERQQLHALAIDAQTGT--GIRQIVSAAKEMLKDKFAKMAAKGIKNPRPMR 125
Query: 119 --VVGVPNVGKSSIINALRSSHMKK 141
+VG+PNVGKS++IN L ++ K
Sbjct: 126 ALIVGIPNVGKSTLINRLAGRNIAK 150
>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=rbgA PE=3 SV=1
Length = 296
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L ++ K G + GVT + +K+ ++ + +LDTPG
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAK-----TGDRPGVT-TAQQWIKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ G+RLA ++D ++ ++A Y L ++ + R + +NL+E +DI
Sbjct: 175 ILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDI 234
Query: 291 VMLL 294
V L
Sbjct: 235 VELF 238
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + + + + LK +D+VIE+ D+R+P + RN ++ + + + +P ++VLNK D+ + +
Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITH-KPRLVVLNKADMADDR-- 66
Query: 61 SLIEEKVR--KEQSHISEVIFTNCRNPNCKGVQKILPTLQ-HISDNMTRYHRTEVYNTTV 117
L ++ + KE+ H++ I N + +G+++I + + + + + +
Sbjct: 67 -LTKQWIAYFKEKGHMA--ISINAQA--GQGMKEIAAACKVLVKEKFDKMVAKGIRPRAI 121
Query: 118 --MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L ++ K P + T Q
Sbjct: 122 RALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQ 159
>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=rbgA PE=3 SV=1
Length = 284
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++VG+PNVGKS++IN L H+ K G GVT++ +K+ ++ + +LDTPG
Sbjct: 127 ALIVGIPNVGKSTLINRLAGKHIAK-----TGDTPGVTKA-QQWIKVGKE--LELLDTPG 178
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ E G +LA ++D ++ ++A Y L +L R + + L + +DI
Sbjct: 179 ILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFLAAYYPDRLKERYALADIPEDI 238
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
V L I K KR + V D +VA + + R G + DR
Sbjct: 239 VQLFDD--IGK---KRGCLAAGGVV----DYDKVAELVLRDIRTEKLGRLSFDR 283
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN L+ + V N +P +++LNK D+ +
Sbjct: 13 MAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVAN-KPRIILLNKADMADP--- 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPT----LQHISDNMTRYHRTEVYNTT 116
+ ++ V + + I + ++ GV++++ L+ + M
Sbjct: 69 DVTKQWVDFFAAQQIDAIAIDSQSGT--GVKQMVAVAKEKLRSKFEKMMAKGMKRPRAMR 126
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
++VG+PNVGKS++IN L H+ K P + Q
Sbjct: 127 ALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQ 163
>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032)
GN=rbgA PE=3 SV=1
Length = 282
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++G+PNVGKS++IN L ++ K G + G+T S VK+ ++ + +LDTPG
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAK-----TGDRPGITTS-QQWVKVGKE--MELLDTPG 174
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I P+ ++ + G+RLA ++D ++ ++A Y L +L R ++L + +D
Sbjct: 175 ILWPKFEDEKVGLRLAVTGAIKDSIINLQDVAVYGLRFLEENYPERLKKRYDLTDIPEDT 234
Query: 291 VMLLAKAAIKK 301
L K+
Sbjct: 235 AELFDAIGTKR 245
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN ++++ +QN +P +++LNK D + +
Sbjct: 10 MAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQN-KPKIMLLNKADKADPRVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHI-SDNMTRYHRTEVYNTTV-- 117
E + EQ + + + + +G+ +I+ T + I + R V +
Sbjct: 69 K--EWQAHFEQQGVRSLAINSV---DGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIRA 123
Query: 118 MVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
+++G+PNVGKS++IN L ++ K P + T Q
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ 159
>sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rbgA PE=1 SV=1
Length = 271
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 148 LPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIIN-ALRSSHMKKGKAVPVGPKAG 206
L TL N + V+ + V+G+PNVGKSS+IN L +H++ V +AG
Sbjct: 97 LQTLFQAKKNQLKAKGLLVHQFRLAVIGMPNVGKSSLINLLLNKNHLQ------VANRAG 150
Query: 207 VTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYIL 266
VT+S MS +IS + Y+ DTPG+ RID + G +L ++ +V ++ +
Sbjct: 151 VTKS-MSWNQISSE--FYLSDTPGVFFKRIDEMAVGYKLVLTNVIKREVVPLEDVGAFAF 207
Query: 267 FYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVAR 326
YL++ +Y + L D L K AI +K +++ ++ N
Sbjct: 208 CYLSK--HYPQL----LPYEGTDFTEFLHKFAISRKLLQKSNQLNINL---------ACE 252
Query: 327 IFIEHFRKGSFGSVMLDRD 345
+F+ G +G + + D
Sbjct: 253 LFVSELINGKYGKLSFELD 271
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEK 66
++K ++D VIEV D+R P +N + N + L L K DL + S I
Sbjct: 23 QLKKLASSLDGVIEVVDARAPTLTQNPEITAYFTNKPKLTLAL-KADLAQTVANSNILWG 81
Query: 67 VRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 126
K+ + ++ K L TL N + V+ + V+G+PNVG
Sbjct: 82 TLKQGLQLKRLVI------------KKLQTLFQAKKNQLKAKGLLVHQFRLAVIGMPNVG 129
Query: 127 KSSIINAL 134
KSS+IN L
Sbjct: 130 KSSLINLL 137
>sp|Q49435|RBGA_MYCGE Probable ribosome biogenesis GTPase A OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rbgA PE=3
SV=1
Length = 270
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 25/171 (14%)
Query: 171 VMVVGVPNVGKSSIINAL-RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
+ V+G+PNVGKSS+IN L +H+K V +AG+T+S ++ ++IS P + + DTP
Sbjct: 119 LAVIGMPNVGKSSLINLLINKNHLK------VANRAGITKS-LNWIQIS--PELLLSDTP 169
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDD 289
G+ L RID ++ G +L ++ +V + + YL + +Y+ + L +D
Sbjct: 170 GVFLKRIDEIQIGYKLVLTNVIRREVVNIEEVGMFAFNYLKK--HYKQL----LPFEADS 223
Query: 290 IVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSV 340
+ L K A + K+A ++++N IFI G +G +
Sbjct: 224 FINFLEKFAKVRGLIKKANELNTNL---------ACEIFINELINGKYGKL 265
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NUG1 PE=1 SV=1
Length = 520
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 8/91 (8%)
Query: 144 AVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP 203
A +L +L+ S+N + R+ V V V+G PNVGKSS+INAL + + KA PVG
Sbjct: 261 ASALLESLKTYSNN-SNLKRSIV----VGVIGYPNVGKSSVINALLARRGGQSKACPVGN 315
Query: 204 KAGVTRSVMSQVKISEKPLIYILDTPGISLP 234
+AGVT S + ++KI K + ILD+PGI P
Sbjct: 316 EAGVTTS-LREIKIDNK--LKILDSPGICFP 343
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 16 DIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLI---------NSKHESLI 63
D+++ V D+R P + R+ ++++V Q R ++L+LNK DLI N S
Sbjct: 177 DVILYVLDARDPESTRSRKVEEAVLQSQGKR-LILILNKVDLIPPHVLEQWLNYLKSSFP 235
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
+R ++ F N + +L +L+ S+N + R+ V V V+G P
Sbjct: 236 TIPLRASSGAVNGTSF-NRKLSQTTTASALLESLKTYSNN-SNLKRSIV----VGVIGYP 289
Query: 124 NVGKSSIINALRSSHMKKGKAVPI 147
NVGKSS+INAL + + KA P+
Sbjct: 290 NVGKSSVINALLARRGGQSKACPV 313
>sp|Q9NVN8|GNL3L_HUMAN Guanine nucleotide-binding protein-like 3-like protein OS=Homo
sapiens GN=GNL3L PE=1 SV=1
Length = 582
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 121/285 (42%), Gaps = 55/285 (19%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESL 62
K+ K ++ D+++EV D+R P R ++++V Q + +VLVLNK DL+ +
Sbjct: 126 KEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKE---- 181
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
+ E RN LPT ++ + H+ V
Sbjct: 182 -----------VVEKWLDYLRNE--------LPT---VAFKASTQHQ------------V 207
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
N+ + S+ S + K KA L + N R + V VVG+PNVGKS
Sbjct: 208 KNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTH-IRVGVVGLPNVGKS 266
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
S+IN+L K+ +A VG G+T+ M +V + + I +LD PGI +P N E G
Sbjct: 267 SLINSL-----KRSRACSVGAVPGITK-FMQEVYLDK--FIRLLDAPGI-VPG-PNSEVG 316
Query: 243 MRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDE 285
L C +Q L + + IL N NY V F E
Sbjct: 317 TILRNCVHVQ-KLADPVTPVETILQRCNLEEISNYYGVSGFQTTE 360
>sp|Q3T0J9|GNL3L_BOVIN Guanine nucleotide-binding protein-like 3-like protein OS=Bos
taurus GN=GNL3L PE=2 SV=1
Length = 575
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 52/250 (20%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESL 62
K+ K ++ D+++EV DSR P R ++++V + + +VLVLNK DL+ +
Sbjct: 119 KEFHKVVEYSDVILEVLDSRDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEVVEK 178
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
E +R E LPT ++ + H+ V
Sbjct: 179 WLEYLRNE-----------------------LPT---VAFKASTQHQ------------V 200
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
N+ + S+ S + K KA L + N R + V VVG+PNVGKS
Sbjct: 201 KNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTH-IRVGVVGLPNVGKS 259
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
S+IN+L K+ +A VG GVT+ M +V + + I +LD PGI +P N E G
Sbjct: 260 SLINSL-----KRSRACSVGAVPGVTK-FMQEVYLDK--FIRLLDAPGI-VPG-PNSEVG 309
Query: 243 MRLAACATLQ 252
L C +Q
Sbjct: 310 TILRNCIHVQ 319
>sp|O74791|GRN1_SCHPO GTPase grn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=grn1 PE=1 SV=1
Length = 470
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 170 TVMVVGVPNVGKSSIINAL--RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
TV V+G PNVGKSS+INAL RS++ + P G AG+T S + +VK+ K + ++D
Sbjct: 271 TVGVIGYPNVGKSSVINALVNRSANGRSA-PCPAGNVAGMTTS-LREVKLDNK--LRLVD 326
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGE-INIADYILFYLNR 271
+PGI P D+ + RL + V + + +A YIL +L+R
Sbjct: 327 SPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSR 371
>sp|Q6PGG6|GNL3L_MOUSE Guanine nucleotide-binding protein-like 3-like protein OS=Mus
musculus GN=Gnl3l PE=1 SV=1
Length = 577
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 126/285 (44%), Gaps = 54/285 (18%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESL 62
K+ K ++ D+++EV D+R P R ++++V + + +VLVLNK DL+ + +
Sbjct: 119 KEFRKVVEYSDVILEVLDARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKE---I 175
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
+E+ + E + LPT+ + T++H +V N T V V
Sbjct: 176 VEKWL--------EYLLNE------------LPTVAFKAS--TQHH--QVKNLTRCKVPV 211
Query: 123 PNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKS 182
+S + K +A L + N R + V VVG+PNVGKS
Sbjct: 212 DQASESLL----------KSRACFGAENLMRVLGNYCRLGEVRGH-IRVGVVGLPNVGKS 260
Query: 183 SIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLECG 242
S+IN+L K+ +A VG GVT+ M +V + + I +LD PGI +P N E G
Sbjct: 261 SLINSL-----KRSRACSVGAVPGVTK-FMQEVYLDK--FIRLLDAPGI-VPG-PNSEVG 310
Query: 243 MRLAACATLQDHLVGEINIADYILFYLN--RTGNYRYVDFFNLDE 285
L C +Q L + + IL N +Y V F E
Sbjct: 311 TILRNCIHVQ-KLADPVTPVETILQRCNLEEISSYYGVSGFQTTE 354
>sp|Q7SHR8|NOG2_NEUCR Nucleolar GTP-binding protein 2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nog-2 PE=3 SV=1
Length = 619
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKHESLI 63
++ K + + D+++ V D+R P R +++ + P ++ VLNK DL+ SK +
Sbjct: 224 ELYKVIDSSDVILHVIDARDPLGTRCRHVEKYLATEAPHKHLIFVLNKIDLVPSKTAAAW 283
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
++K+ H + + ++ +NP +G ++ L+ S + R ++ +V +VG P
Sbjct: 284 IRVLQKD--HPTCAMRSSIKNPFGRG--SLIDLLRQFS--ILHKDRKQI---SVGLVGYP 334
Query: 124 NVGKSSIINALRSSHMKKGKAVP 146
NVGKSSIINALR + K +P
Sbjct: 335 NVGKSSIINALRGKPVAKVAPIP 357
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
+V +VG PNVGKSSIINALR + K V P G T+ V V + + IY++D P
Sbjct: 327 SVGLVGYPNVGKSSIINALRGKPVAK-----VAPIPGETK-VWQYVTLMRR--IYLIDCP 378
Query: 230 GISLP 234
GI P
Sbjct: 379 GIVPP 383
>sp|O67800|ERA_AQUAE GTPase Era OS=Aquifex aeolicus (strain VF5) GN=era PE=1 SV=1
Length = 301
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTP 229
V +VG PNVGKS+++N L + K + PKAG TR + VK I + I LDTP
Sbjct: 6 VAIVGKPNVGKSTLLNNLLGT-----KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 60
Query: 230 GISLP-RIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVD 279
GI P + D L M A +L++ AD ILF ++ T +R D
Sbjct: 61 GIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILFMIDATEGWRPRD 103
>sp|Q9C3Z4|NOG2_PNECA Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2
PE=2 SV=1
Length = 483
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 74/241 (30%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKH 59
R ++ K + + D++I++ D+R P R +++ ++ +P M+L+LNK DLI
Sbjct: 187 RIWNELYKXIDSSDVIIQLLDARNPLGTRCKHVEEYLKKEKPHKHMILLLNKCDLIP--- 243
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
T C K + K PTL +H +
Sbjct: 244 --------------------TWCTREWIKQLSKEYPTLA--------FHAS--------- 266
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
+ P GK S+I LR ++ H + +V +G PN
Sbjct: 267 INNP-FGKGSLIQLLRQ---------------------FSKLH-SNRRQISVGFIGYPNT 303
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239
GKSS+IN LRS K P G T+ V V+++ K I+++D PGI P ++
Sbjct: 304 GKSSVINTLRSK-----KVCNTAPIPGETK-VWQYVRMTSK--IFMIDCPGIVPPNSNDS 355
Query: 240 E 240
E
Sbjct: 356 E 356
>sp|Q8MT06|GNL3_DROME Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila
melanogaster GN=ns1 PE=1 SV=2
Length = 581
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG+PNVGKSSIIN+L +G++ VG GVT+S M +V++ K I ++D PG
Sbjct: 270 VGVVGIPNVGKSSIINSL-----TRGRSCMVGSTPGVTKS-MQEVELDSK--IKLIDCPG 321
Query: 231 I 231
I
Sbjct: 322 I 322
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 31/154 (20%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSKH-- 59
K+ K ++N D+V+EV D+R P R + ++++V+ + +VLVLNK DL+ ++
Sbjct: 141 FKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLN 200
Query: 60 ----------------ESLIEEKVRKEQSHISEVIFTNCRNPN-CKGVQKILPTLQHISD 102
S ++ R + + E+ + C G + ++ L +
Sbjct: 201 NWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAELLMSMLGN--- 257
Query: 103 NMTRYHRTEVYNTT--VMVVGVPNVGKSSIINAL 134
Y R + T+ V VVG+PNVGKSSIIN+L
Sbjct: 258 ----YCRNKGIKTSIRVGVVGIPNVGKSSIINSL 287
>sp|Q21086|GNL3_CAEEL Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis
elegans GN=nst-1 PE=3 SV=1
Length = 556
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 128/287 (44%), Gaps = 63/287 (21%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEE 65
++ K ++ D++I+V D+R P R+ ++ Q ++ + +VL+LNK DL+ ++ E
Sbjct: 140 EVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGGKRLVLLLNKIDLVPRENVQKWLE 199
Query: 66 KVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPN 124
+R + I+ + Q N+ R++ + NT T VG
Sbjct: 200 YLRGQFPTIA-----------------FKASTQEQKSNIGRFNSAILNNTETSKCVGADI 242
Query: 125 VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSI 184
V K + N R+ +K + V VVG PNVGKSS+
Sbjct: 243 VMKI-LANYCRNKDIK--------------------------TSIRVGVVGFPNVGKSSV 275
Query: 185 INALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG---ISLPRIDNLEC 241
IN+L K+ KA VG G+T+ + +V++ + I ++D+PG +S +D +E
Sbjct: 276 INSL-----KRRKACNVGNLPGITKEIQ-EVELDKN--IRLIDSPGVILVSQKDLDPIEV 327
Query: 242 GMRLAACATLQDHLVGEINIADYILFYLNRTG---NYRYVDFFNLDE 285
++ A D+L+ I IL ++ +Y DF ++D+
Sbjct: 328 ALK---NAIRVDNLLDPIAPVHAILRRCSKETIMLHYNLADFNSVDQ 371
>sp|O25396|FEOB_HELPY Ferrous iron transport protein B OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=feoB PE=3 SV=1
Length = 642
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T+ +VG PNVGKSS+INAL ++H+K VG AGVT M I ++ I I+D P
Sbjct: 5 TIALVGQPNVGKSSLINALSNAHLK------VGNFAGVTVDKMEVGLIHKEHQITIIDLP 58
Query: 230 G 230
G
Sbjct: 59 G 59
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKG 142
T+ +VG PNVGKSS+INAL ++H+K G
Sbjct: 5 TIALVGQPNVGKSSLINALSNAHLKVG 31
>sp|Q9WZM6|RBGA_THEMA Ribosome biogenesis GTPase A OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rbgA PE=1 SV=1
Length = 262
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
R +KD+ L+ V+ V+EV D+R PF + + S + +++LNK D+ + K
Sbjct: 13 RQIKDL---LRLVNTVVEVRDARAPFATSAYGVDFSRKE---TIILLNKVDIADEKTTKK 66
Query: 63 IEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS-DNMTRYHRTEVYNTTVMVVG 121
E +K+ VI T+ P +K+L L+ +S D + R V++VG
Sbjct: 67 WVEFFKKQGKR---VITTHKGEP-----RKVL--LKKLSFDRLAR----------VLIVG 106
Query: 122 VPNVGKSSIINALRSSHMKKGKAVP-ILPTLQHIS 155
VPN GKS+IIN L+ A P I +Q S
Sbjct: 107 VPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V++VGVPN GKS+IIN L+ +A VG + G+T+ + S + + ILDTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLKGK-----RASSVGAQPGITKGIQW---FSLENGVKILDTPG 153
Query: 231 ISLPRIDNLECGMRLAACATL 251
I I + + +L +L
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSL 174
>sp|Q6P4W5|GNL3_XENTR Guanine nucleotide-binding protein-like 3 OS=Xenopus tropicalis
GN=gnl3 PE=2 SV=2
Length = 548
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V V+G NVGKSS+IN+L+ SH+ VGP G TR V+ +V++ P I +LD+P
Sbjct: 250 VGVIGFANVGKSSVINSLKQSHV-----CNVGPTKGTTR-VLQEVRLD--PQIRMLDSPA 301
Query: 231 I 231
+
Sbjct: 302 L 302
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 35/156 (22%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKHESLIE 64
+ K L+ D+V+EV D+R P R +++V N R ++L+LNK DL+ ++E
Sbjct: 128 VNKVLEQSDVVLEVLDARDPLGSRCAQAEEAVLKSPNKR-LLLLLNKADLV---PRDVLE 183
Query: 65 EKVRKEQSHISEVIFTN---------------------CRNPNCKGVQKILPTLQHISDN 103
+ ++ + + V F C C G Q +L L + +
Sbjct: 184 KWLQVLTAELPTVPFRCLPQAPSKSPGKKHKVPNTADLCTENRCPGGQVLLRILHSLCPS 243
Query: 104 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHM 139
+ V V+G NVGKSS+IN+L+ SH+
Sbjct: 244 QSDA-------IKVGVIGFANVGKSSVINSLKQSHV 272
>sp|B6JGG2|ERA_OLICO GTPase Era OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM
1227 / OM5) GN=era PE=3 SV=1
Length = 308
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 154 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS 213
+ DNM V ++G PNVGKS+++NAL S K V K TR+++
Sbjct: 1 MPDNMPEEQAHPTRCGFVALIGAPNVGKSTLVNALVGS-----KVTIVSRKVQTTRALIR 55
Query: 214 QVKISEKPLIYILDTPGISLP--RIDNLECGMRLAAC------ATLQDHLVGEINIADYI 265
+ + I ++DTPGI P R+D + L D G A+ I
Sbjct: 56 GIVVEGNAQIVLVDTPGIFTPKRRLDRAMVSTAWSGAHDADMVCVLLDARAGLDEEAEAI 115
Query: 266 LFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNS 314
L + +++ +D + + ++ LA+ A ++ F+ F V++ S
Sbjct: 116 FTKLEAVKHPKFLVINKIDLVAREKLLALAQRANERIAFRETFMVAALS 164
>sp|Q9ZLF3|FEOB_HELPJ Ferrous iron transport protein B OS=Helicobacter pylori (strain
J99) GN=feoB PE=3 SV=1
Length = 642
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V +VG PNVGKSS+INAL ++H+K VG AGVT M I + I I+D PG
Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK------VGNFAGVTVDKMEVSLIHKDHQITIIDLPG 59
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKG 142
V +VG PNVGKSS+INAL ++H+K G
Sbjct: 6 VALVGQPNVGKSSLINALSNAHLKVG 31
>sp|Q6DRP2|GNL3_DANRE Guanine nucleotide-binding protein-like 3 OS=Danio rerio GN=gnl3
PE=2 SV=1
Length = 561
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 8/61 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG PNVGKSSIIN+L K+ +A G + G+TR M +V I++K + ++D+PG
Sbjct: 264 VGVVGFPNVGKSSIINSL-----KEMRACNAGVQRGLTR-CMQEVHITKK--VKMIDSPG 315
Query: 231 I 231
I
Sbjct: 316 I 316
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---QNIRPMVLVLNKRDLINSKH--- 59
+++ K ++ D+++EV D+R P R L++ V + + ++ +LNK DL+ +
Sbjct: 134 QELNKVIEASDVIVEVLDARDPLGCRCPQLEEMVLKHEGKKKLLFILNKIDLVPKDNLEK 193
Query: 60 --------------ESLIEEKVR----KEQSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101
+S ++ K R K Q + + + R +C G +L TL ++
Sbjct: 194 WLHFLEAECPTFLFKSSMQLKDRTVQQKRQQRGTNAVLDHSRAASCFGKDFLLQTLNDLA 253
Query: 102 DNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 135
+ + T + V VVG PNVGKSSIIN+L+
Sbjct: 254 NK--KEGETML---KVGVVGFPNVGKSSIINSLK 282
>sp|Q038T2|ERA_LACC3 GTPase Era OS=Lactobacillus casei (strain ATCC 334) GN=era PE=3
SV=1
Length = 300
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLI 223
+E ++ V ++G PNVGKS+ +N + K + PKA TR+ ++ + + I
Sbjct: 2 SEHHSGFVAIIGRPNVGKSTFMNRILGE-----KIAIMSPKAQTTRNKINGIYTTPDAQI 56
Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+DTPGI P+ + L+ M AA +TL N D ILF
Sbjct: 57 VFVDTPGIHKPK-NELDTYMDKAALSTL--------NQVDAILF 91
>sp|B3WEL1|ERA_LACCB GTPase Era OS=Lactobacillus casei (strain BL23) GN=era PE=3 SV=1
Length = 300
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLI 223
+E ++ V ++G PNVGKS+ +N + K + PKA TR+ ++ + + I
Sbjct: 2 SEHHSGFVAIIGRPNVGKSTFMNRILGE-----KIAIMSPKAQTTRNKINGIYTTPDAQI 56
Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+DTPGI P+ + L+ M AA +TL N D ILF
Sbjct: 57 VFVDTPGIHKPK-NELDTYMDKAALSTL--------NQVDAILF 91
>sp|Q7VSR5|MNME_BORPE tRNA modification GTPase MnmE OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=mnmE PE=3 SV=1
Length = 450
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 139 MKKGKAVPILPTLQHISDNMTRYHRTEVY---NTTVMVVGVPNVGKSSIINALRSSHMKK 195
++K +A P L L H D + R V V++ G PNVGKSS++NAL +
Sbjct: 187 LEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAI 246
Query: 196 GKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTPGI 231
V P AG TR V+ ++ I PL +I+DT G+
Sbjct: 247 -----VTPIAGTTRDKVVQEIHIDGVPL-HIVDTAGL 277
>sp|Q7W2J0|MNME_BORPA tRNA modification GTPase MnmE OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=mnmE PE=3 SV=1
Length = 450
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 139 MKKGKAVPILPTLQHISDNMTRYHRTEVY---NTTVMVVGVPNVGKSSIINALRSSHMKK 195
++K +A P L L H D + R V V++ G PNVGKSS++NAL +
Sbjct: 187 LEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAI 246
Query: 196 GKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTPGI 231
V P AG TR V+ ++ I PL +I+DT G+
Sbjct: 247 -----VTPIAGTTRDKVVQEIHIDGVPL-HIVDTAGL 277
>sp|Q7WDI4|MNME_BORBR tRNA modification GTPase MnmE OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=mnmE PE=3 SV=1
Length = 450
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 139 MKKGKAVPILPTLQHISDNMTRYHRTEVY---NTTVMVVGVPNVGKSSIINALRSSHMKK 195
++K +A P L L H D + R V V++ G PNVGKSS++NAL +
Sbjct: 187 LEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAI 246
Query: 196 GKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDTPGI 231
V P AG TR V+ ++ I PL +I+DT G+
Sbjct: 247 -----VTPIAGTTRDKVVQEIHIDGVPL-HIVDTAGL 277
>sp|Q30T75|MNME_SULDN tRNA modification GTPase MnmE OS=Sulfurimonas denitrificans (strain
ATCC 33889 / DSM 1251) GN=mnmE PE=3 SV=1
Length = 446
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 23/152 (15%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTP 229
V ++G PNVGKSS++NAL + +A+ V AG TR ++ QVKI LI I+DT
Sbjct: 218 VAIIGKPNVGKSSLLNAL----LNYNRAI-VSDIAGTTRDTIEEQVKIG-THLIRIVDTA 271
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYI--LFYLNRTGNYRYVDFFNLDEP- 286
GI D +E R+ +L+ IN +D + LF +R +Y +L E
Sbjct: 272 GIREAS-DEIE---RIGIERSLE-----AINESDIVIALFDASRVADYEDEQILSLIESK 322
Query: 287 --SDDIVMLLAKAAIKKKWFKRA--FDVSSNS 314
S +++ + K +++K+++ + FD+ NS
Sbjct: 323 AGSKNVLHVKNKIDLEEKFYRSSLEFDIEINS 354
>sp|Q72PQ1|DER_LEPIC GTPase Der OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar copenhageni (strain Fiocruz L1-130) GN=der PE=3
SV=1
Length = 489
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPL-IYILDT 228
V +VG NVGKS++ N+L + + P GVTR V+S ++ EK L Y+ DT
Sbjct: 32 VSIVGRQNVGKSTLFNSLLKKKLAITEDYP-----GVTRDVLSARIYQEEKDLDFYLCDT 86
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
PG+ + D+L T+ + G++ +D I+F L++
Sbjct: 87 PGLDIENPDSL--------SQTILETAYGQLRESDVIVFLLDK 121
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLI 223
E Y + +VG PN GKSS++NA+ +AV V AG TR S+ + ++ ++ L+
Sbjct: 223 EDYEFRLAIVGKPNSGKSSLLNAICGYE----RAV-VSDVAGTTRDSIDTLLEFGDRRLL 277
Query: 224 YILDTPGI 231
+ DT GI
Sbjct: 278 -LTDTAGI 284
>sp|Q8CI11|GNL3_MOUSE Guanine nucleotide-binding protein-like 3 OS=Mus musculus GN=Gnl3
PE=1 SV=2
Length = 538
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 17/144 (11%)
Query: 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSV--QNIRPMVLVLNKRDLINSKHESLI 63
++++K ++ DIV+EV D+R P R ++++V + ++LVLNK DL+ ++ +
Sbjct: 130 QELKKVIEASDIVLEVLDARDPLGCRCPQIEEAVIQSGSKKLILVLNKSDLVPKEN---L 186
Query: 64 EEKVRKEQSHISEVIF---TNCRNPNCKGV---------QKILPTLQHISDNMTRYHRTE 111
E + + V+F TN +N + KI + + + + ++
Sbjct: 187 ENWLNYLNKELPTVVFKASTNLKNRKTFKIKKKKVVPFQSKICCGKEALWKLLGDFQQSC 246
Query: 112 VYNTTVMVVGVPNVGKSSIINALR 135
+ V V+G PNVGKSS+IN+L+
Sbjct: 247 GKDIQVGVIGFPNVGKSSVINSLK 270
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V V+G PNVGKSS+IN+L+ + VG G+TRS M V + ++ I I+D+P
Sbjct: 252 VGVIGFPNVGKSSVINSLKQEWI-----CNVGISMGLTRS-MQIVPLDKQ--ITIIDSPC 303
Query: 231 I 231
+
Sbjct: 304 L 304
>sp|Q04ZS1|DER_LEPBL GTPase Der OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=der PE=3 SV=1
Length = 487
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPL-IYILDT 228
V +VG NVGKS++ N+L + + P GVTR V+S +V EK L Y+ DT
Sbjct: 30 VSIVGRQNVGKSTLFNSLLKKKLAITEDYP-----GVTRDVLSARVYQEEKDLDFYLCDT 84
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
PG+ + D+L + AA ++N +D I+F L++
Sbjct: 85 PGLDIENPDSLSQSILEAA--------YRQLNESDVIIFLLDK 119
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLI 223
E Y + +VG PN GKSS++NA+ +AV V AG TR SV + ++ + L+
Sbjct: 221 EDYEFRLAIVGKPNSGKSSLLNAVCGYE----RAV-VSDVAGTTRDSVDTLLEFGNRKLL 275
Query: 224 YILDTPGI 231
+ DT GI
Sbjct: 276 -LTDTAGI 282
>sp|Q04TV4|DER_LEPBJ GTPase Der OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=der PE=3 SV=1
Length = 487
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKPL-IYILDT 228
V +VG NVGKS++ N+L + + P GVTR V+S +V EK L Y+ DT
Sbjct: 30 VSIVGRQNVGKSTLFNSLLKKKLAITEDYP-----GVTRDVLSARVYQEEKDLDFYLCDT 84
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNR 271
PG+ + D+L + AA ++N +D I+F L++
Sbjct: 85 PGLDIENPDSLSQSILEAA--------YRQLNESDVIIFLLDK 119
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLI 223
E Y + +VG PN GKSS++NA+ +AV V AG TR SV + ++ + L+
Sbjct: 221 EDYEFRLAIVGKPNSGKSSLLNAVCGYE----RAV-VSDVAGTTRDSVDTLLEFGNRKLL 275
Query: 224 YILDTPGI 231
+ DT GI
Sbjct: 276 -LTDTAGI 282
>sp|Q2LSF6|MNME_SYNAS tRNA modification GTPase MnmE OS=Syntrophus aciditrophicus (strain
SB) GN=mnmE PE=3 SV=1
Length = 457
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 147 ILPTLQHISDNM----TRYHRTEVY--NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 200
+L L+ +S ++ + Y + +VY TV++ G PN GKSS++N L +++ +A+
Sbjct: 192 VLSKLERLSSDLEALLSTYDQGKVYRHGATVVIAGKPNTGKSSLLNCL----LQEKRAI- 246
Query: 201 VGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC-GMRL 245
V P G TR + + + + ++DT GI P D +EC G+R+
Sbjct: 247 VTPVPGTTRDFIEEAISIQGVSVRMIDTAGIH-PTDDLIECEGIRM 291
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 92 KILPTLQHISDNM----TRYHRTEVY--NTTVMVVGVPNVGKSSIINAL 134
++L L+ +S ++ + Y + +VY TV++ G PN GKSS++N L
Sbjct: 191 EVLSKLERLSSDLEALLSTYDQGKVYRHGATVVIAGKPNTGKSSLLNCL 239
>sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=NOG2 PE=3 SV=1
Length = 509
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 43/191 (22%)
Query: 45 MVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM 104
++ VL+ RD + ++ S +E+ ++KE H + N C ++PT ++
Sbjct: 217 VIHVLDARDPLGTRCTS-VEQYIKKEAPHKHLIFVLN----KCD----LVPTW--VAAAW 265
Query: 105 TRYHRTEVYNTTVMVVGVPN-VGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR 163
+ H ++ Y T + N GK S+I LR + P Q IS
Sbjct: 266 VK-HLSQDYPTLAFHASITNSFGKGSLIQLLRQYSA-------LHPDRQQIS-------- 309
Query: 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLI 223
V +G PN GKSSIIN LR + K +P K ++M + I
Sbjct: 310 -------VGFIGYPNTGKSSIINTLRKKKVCKTAPIPGETKVWQYITLMKR--------I 354
Query: 224 YILDTPGISLP 234
+++D PGI P
Sbjct: 355 FLIDCPGIVPP 365
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRP---MVLVLNKRDLINSKHESLI 63
++ K + + D+VI V D+R P R ++Q ++ P ++ VLNK DL+ + +
Sbjct: 206 ELYKVIDSSDVVIHVLDARDPLGTRCTSVEQYIKKEAPHKHLIFVLNKCDLV----PTWV 261
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVP 123
K S + + N G ++ L+ S R ++ +V +G P
Sbjct: 262 AAAWVKHLSQDYPTLAFHASITNSFGKGSLIQLLRQYS--ALHPDRQQI---SVGFIGYP 316
Query: 124 NVGKSSIINALRSSHMKKGKAVP 146
N GKSSIIN LR + K +P
Sbjct: 317 NTGKSSIINTLRKKKVCKTAPIP 339
>sp|A1WDB4|MNME_ACISJ tRNA modification GTPase MnmE OS=Acidovorax sp. (strain JS42)
GN=mnmE PE=3 SV=2
Length = 466
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQ-VKISEKPLIYILDTP 229
V++ G PN GKSS++NAL + + V P AG TR + Q ++I PL +++DT
Sbjct: 226 VVIAGQPNAGKSSLLNALAGAEL-----AIVTPIAGTTRDKVQQTIQIEGVPL-HVIDTA 279
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFY--LNRTGNYRYVD 279
G+ + G+ A D + G AD +LF L R G+ +Y D
Sbjct: 280 GLRESDDEVERIGI-----ARAWDEIAG----ADAVLFLHDLTRWGSAQYQD 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,324,225
Number of Sequences: 539616
Number of extensions: 5085034
Number of successful extensions: 28039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 1618
Number of HSP's that attempted gapping in prelim test: 26035
Number of HSP's gapped (non-prelim): 4466
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)