Query psy15351
Match_columns 352
No_of_seqs 330 out of 3589
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:42:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 5E-47 1.7E-51 348.2 26.5 272 1-346 10-281 (282)
2 3cnl_A YLQF, putative uncharac 100.0 1.2E-40 4.1E-45 302.7 12.6 241 1-346 8-249 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 7.4E-23 2.5E-27 194.5 15.7 161 4-235 60-226 (369)
4 3h2y_A GTPase family protein; 99.9 1.7E-22 5.9E-27 191.8 13.7 161 4-235 58-225 (368)
5 2hjg_A GTP-binding protein ENG 99.9 3.1E-22 1.1E-26 194.6 13.9 164 4-234 72-236 (436)
6 4dcu_A GTP-binding protein ENG 99.9 2.4E-21 8.1E-26 189.4 17.1 163 5-234 93-256 (456)
7 1mky_A Probable GTP-binding pr 99.9 2.9E-21 9.9E-26 187.9 15.2 168 5-233 72-240 (439)
8 1t9h_A YLOQ, probable GTPase E 99.8 4.3E-20 1.5E-24 170.3 9.3 143 10-236 82-239 (307)
9 2rcn_A Probable GTPase ENGC; Y 99.7 1.7E-17 5.7E-22 155.8 15.1 142 9-234 125-281 (358)
10 2yv5_A YJEQ protein; hydrolase 99.7 5.4E-17 1.9E-21 150.0 14.5 145 11-234 76-229 (302)
11 1u0l_A Probable GTPase ENGC; p 99.7 4.1E-16 1.4E-20 144.0 16.4 143 10-236 80-236 (301)
12 2e87_A Hypothetical protein PH 99.5 1E-15 3.4E-20 144.8 -3.3 166 16-236 59-229 (357)
13 4a9a_A Ribosome-interacting GT 99.4 1.1E-13 3.8E-18 130.7 4.5 62 167-234 71-132 (376)
14 3iev_A GTP-binding protein ERA 99.3 7.8E-12 2.7E-16 115.7 11.3 66 165-235 7-73 (308)
15 1wf3_A GTP-binding protein; GT 99.2 1.7E-11 5.7E-16 113.0 7.1 63 168-235 7-69 (301)
16 1jal_A YCHF protein; nucleotid 99.2 1E-11 3.5E-16 116.7 3.2 91 168-274 2-109 (363)
17 1mky_A Probable GTP-binding pr 99.1 1.7E-11 5.8E-16 118.9 4.6 61 169-234 2-62 (439)
18 2ohf_A Protein OLA1, GTP-bindi 99.1 1.6E-11 5.4E-16 116.5 4.1 110 166-291 20-146 (396)
19 1ega_A Protein (GTP-binding pr 99.0 4E-10 1.4E-14 103.8 9.0 60 168-232 8-67 (301)
20 3gee_A MNME, tRNA modification 99.0 2.1E-10 7.3E-15 112.0 6.9 64 166-234 231-294 (476)
21 3lxw_A GTPase IMAP family memb 99.0 2.4E-10 8.1E-15 102.3 6.7 64 166-234 19-83 (247)
22 2hjg_A GTP-binding protein ENG 99.0 9.4E-11 3.2E-15 113.6 3.9 61 169-234 4-64 (436)
23 3iby_A Ferrous iron transport 99.0 7.5E-10 2.6E-14 99.5 8.5 62 169-236 2-63 (256)
24 3i8s_A Ferrous iron transport 99.0 5.4E-10 1.8E-14 101.5 7.3 62 168-235 3-64 (274)
25 3a1s_A Iron(II) transport prot 99.0 1.4E-09 4.8E-14 97.9 9.4 69 167-241 4-72 (258)
26 2xtp_A GTPase IMAP family memb 99.0 6.3E-10 2.2E-14 100.0 6.5 67 166-237 20-87 (260)
27 2gj8_A MNME, tRNA modification 99.0 7.8E-10 2.7E-14 93.0 6.7 63 167-234 3-65 (172)
28 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2.2E-10 7.6E-15 108.8 3.4 64 166-234 18-98 (392)
29 1wxq_A GTP-binding protein; st 98.9 1.3E-10 4.3E-15 111.1 1.4 60 169-234 1-84 (397)
30 3lxx_A GTPase IMAP family memb 98.9 1.6E-09 5.4E-14 96.1 8.3 68 166-239 27-96 (239)
31 4dhe_A Probable GTP-binding pr 98.9 8.9E-10 3E-14 96.2 6.5 67 166-236 27-94 (223)
32 3b1v_A Ferrous iron uptake tra 98.9 2.3E-09 7.8E-14 97.2 9.2 67 168-241 3-69 (272)
33 2qu8_A Putative nucleolar GTP- 98.9 1.1E-09 3.7E-14 96.4 6.5 68 161-234 22-89 (228)
34 1xzp_A Probable tRNA modificat 98.9 1.3E-10 4.6E-15 113.5 0.6 63 167-234 242-305 (482)
35 3k53_A Ferrous iron transport 98.9 4.2E-09 1.4E-13 95.3 9.2 67 168-240 3-69 (271)
36 2dby_A GTP-binding protein; GD 98.9 4.4E-10 1.5E-14 106.1 2.4 90 169-274 2-112 (368)
37 1h65_A Chloroplast outer envel 98.9 1.4E-09 4.8E-14 98.4 5.7 65 166-235 37-101 (270)
38 3def_A T7I23.11 protein; chlor 98.9 1.6E-09 5.5E-14 97.6 5.9 65 166-235 34-98 (262)
39 3iev_A GTP-binding protein ERA 98.9 9.1E-09 3.1E-13 95.0 11.1 98 6-105 84-184 (308)
40 2wji_A Ferrous iron transport 98.9 6.8E-09 2.3E-13 86.4 8.7 61 168-234 3-63 (165)
41 1f5n_A Interferon-induced guan 98.9 1.9E-09 6.5E-14 107.3 6.1 63 166-235 36-105 (592)
42 3pqc_A Probable GTP-binding pr 98.8 6.3E-09 2.2E-13 88.3 7.5 63 166-236 21-83 (195)
43 2cxx_A Probable GTP-binding pr 98.8 4.6E-08 1.6E-12 82.6 12.8 57 169-235 2-58 (190)
44 4dhe_A Probable GTP-binding pr 98.8 2E-08 6.8E-13 87.5 10.1 95 8-104 109-212 (223)
45 2qtf_A Protein HFLX, GTP-bindi 98.8 4.5E-09 1.5E-13 99.2 6.2 59 170-234 181-239 (364)
46 3pqc_A Probable GTP-binding pr 98.8 3.7E-08 1.3E-12 83.5 11.4 92 9-102 99-193 (195)
47 1lnz_A SPO0B-associated GTP-bi 98.8 3.6E-09 1.2E-13 98.9 5.2 59 169-233 159-218 (342)
48 2wjg_A FEOB, ferrous iron tran 98.8 2E-08 6.9E-13 84.9 9.4 62 167-234 6-67 (188)
49 1x3s_A RAS-related protein RAB 98.8 2.2E-08 7.4E-13 85.0 9.3 107 8-129 81-194 (195)
50 1svi_A GTP-binding protein YSX 98.8 1.5E-08 5.1E-13 86.2 8.3 64 166-236 21-84 (195)
51 3geh_A MNME, tRNA modification 98.7 1.7E-09 6E-14 105.1 1.4 64 166-234 222-285 (462)
52 2dyk_A GTP-binding protein; GT 98.7 8.6E-09 2.9E-13 84.7 5.4 61 169-234 2-62 (161)
53 4dcu_A GTP-binding protein ENG 98.7 3.4E-08 1.2E-12 96.1 10.0 96 8-105 271-371 (456)
54 1jwy_B Dynamin A GTPase domain 98.7 1.1E-08 3.7E-13 94.4 6.2 39 167-205 23-61 (315)
55 1svi_A GTP-binding protein YSX 98.7 7.2E-08 2.5E-12 81.9 10.7 88 13-102 104-194 (195)
56 3t5d_A Septin-7; GTP-binding p 98.7 1.6E-08 5.6E-13 91.6 6.5 68 167-234 7-78 (274)
57 1wf3_A GTP-binding protein; GT 98.7 2.8E-08 9.4E-13 91.4 8.0 95 5-105 77-175 (301)
58 2dyk_A GTP-binding protein; GT 98.7 2.5E-08 8.7E-13 81.8 6.9 89 6-101 71-160 (161)
59 1xzp_A Probable tRNA modificat 98.7 6.7E-08 2.3E-12 94.4 10.3 92 4-102 313-404 (482)
60 3sjy_A Translation initiation 98.6 1.2E-07 4E-12 90.8 10.8 99 3-103 87-192 (403)
61 2nzj_A GTP-binding protein REM 98.6 3.1E-08 1.1E-12 82.4 6.0 61 167-233 3-64 (175)
62 1z0j_A RAB-22, RAS-related pro 98.6 4.1E-08 1.4E-12 81.2 5.7 62 167-233 5-67 (170)
63 2aka_B Dynamin-1; fusion prote 98.6 6.3E-08 2.1E-12 88.4 7.0 40 167-206 25-64 (299)
64 4bas_A ADP-ribosylation factor 98.6 8.4E-08 2.9E-12 81.7 7.2 90 10-104 82-190 (199)
65 2lkc_A Translation initiation 98.6 3.9E-08 1.3E-12 82.2 4.8 62 166-233 6-67 (178)
66 1upt_A ARL1, ADP-ribosylation 98.6 1.8E-07 6.3E-12 77.3 9.0 92 9-102 69-168 (171)
67 3tw8_B RAS-related protein RAB 98.6 9.2E-08 3.2E-12 79.9 7.0 62 166-233 7-70 (181)
68 3t1o_A Gliding protein MGLA; G 98.6 1.5E-07 5.1E-12 79.8 8.3 92 8-103 91-192 (198)
69 2qpt_A EH domain-containing pr 98.6 3.2E-08 1.1E-12 98.3 4.4 40 166-210 63-104 (550)
70 3q72_A GTP-binding protein RAD 98.6 4.8E-08 1.6E-12 80.6 4.7 59 168-233 2-61 (166)
71 3gee_A MNME, tRNA modification 98.6 9.6E-08 3.3E-12 93.2 7.6 91 5-102 303-397 (476)
72 3t5g_A GTP-binding protein RHE 98.5 7.5E-08 2.6E-12 80.8 5.9 89 10-103 73-169 (181)
73 1r8s_A ADP-ribosylation factor 98.5 1.7E-07 5.9E-12 77.1 7.9 93 8-102 61-161 (164)
74 1zj6_A ADP-ribosylation factor 98.5 1.3E-07 4.4E-12 80.0 7.2 94 9-104 78-179 (187)
75 2h57_A ADP-ribosylation factor 98.5 1.2E-07 4E-12 80.4 6.9 92 10-103 86-187 (190)
76 3kkq_A RAS-related protein M-R 98.5 3.4E-07 1.2E-11 76.8 9.5 89 9-102 84-181 (183)
77 2g6b_A RAS-related protein RAB 98.5 1.8E-07 6.1E-12 78.2 7.7 91 8-103 77-174 (180)
78 1r2q_A RAS-related protein RAB 98.5 1.4E-07 4.9E-12 77.8 7.0 90 8-102 72-168 (170)
79 2g6b_A RAS-related protein RAB 98.5 1.5E-07 5.2E-12 78.6 7.2 63 166-233 8-72 (180)
80 3r7w_A Gtpase1, GTP-binding pr 98.5 8.3E-08 2.8E-12 88.4 6.0 61 167-232 2-63 (307)
81 1wb1_A Translation elongation 98.5 2.8E-07 9.5E-12 90.2 10.0 97 4-102 86-188 (482)
82 1ksh_A ARF-like protein 2; sma 98.5 1.7E-07 5.9E-12 79.0 7.3 93 9-103 80-180 (186)
83 3bc1_A RAS-related protein RAB 98.5 4.4E-07 1.5E-11 76.5 9.9 92 7-103 86-185 (195)
84 1z0f_A RAB14, member RAS oncog 98.5 2.9E-07 9.9E-12 76.7 8.5 89 8-101 81-176 (179)
85 2efe_B Small GTP-binding prote 98.5 2.2E-07 7.6E-12 77.7 7.8 90 9-103 79-175 (181)
86 2fg5_A RAB-22B, RAS-related pr 98.5 9.4E-08 3.2E-12 81.3 5.5 62 166-232 21-83 (192)
87 2x77_A ADP-ribosylation factor 98.5 2.9E-07 9.8E-12 77.9 8.4 91 11-103 86-184 (189)
88 1ek0_A Protein (GTP-binding pr 98.5 1.2E-07 4E-12 78.3 5.4 60 168-232 3-63 (170)
89 2x2e_A Dynamin-1; nitration, h 98.5 1.3E-07 4.5E-12 88.8 6.3 40 167-206 30-69 (353)
90 3clv_A RAB5 protein, putative; 98.5 3.7E-07 1.3E-11 77.6 8.6 90 8-102 110-203 (208)
91 1u8z_A RAS-related protein RAL 98.5 3.4E-07 1.2E-11 75.2 8.0 90 8-102 69-166 (168)
92 1g16_A RAS-related protein SEC 98.5 4.6E-07 1.6E-11 74.7 8.8 90 9-103 70-165 (170)
93 1r2q_A RAS-related protein RAB 98.5 1.2E-07 4.2E-12 78.1 5.3 62 167-233 5-67 (170)
94 4dsu_A GTPase KRAS, isoform 2B 98.5 2.1E-07 7.2E-12 78.3 6.8 61 167-234 3-65 (189)
95 2gj8_A MNME, tRNA modification 98.5 7.9E-08 2.7E-12 80.5 4.1 89 5-103 74-166 (172)
96 1pui_A ENGB, probable GTP-bind 98.5 1.1E-07 3.6E-12 82.0 5.0 62 166-234 24-85 (210)
97 2b6h_A ADP-ribosylation factor 98.5 3.9E-07 1.3E-11 77.6 8.5 92 9-102 91-190 (192)
98 2oil_A CATX-8, RAS-related pro 98.5 1.7E-07 5.7E-12 79.6 6.1 64 166-234 23-87 (193)
99 4djt_A GTP-binding nuclear pro 98.5 3.2E-07 1.1E-11 79.5 7.9 91 10-105 80-177 (218)
100 1zd9_A ADP-ribosylation factor 98.5 3.1E-07 1.1E-11 77.8 7.6 93 8-102 84-184 (188)
101 2y8e_A RAB-protein 6, GH09086P 98.5 3E-07 1E-11 76.6 7.4 89 9-102 81-176 (179)
102 2h17_A ADP-ribosylation factor 98.5 1.6E-07 5.6E-12 79.0 5.8 89 9-99 83-179 (181)
103 3cb4_D GTP-binding protein LEP 98.5 1E-06 3.4E-11 88.2 12.3 131 3-137 83-216 (599)
104 3tkl_A RAS-related protein RAB 98.5 7.2E-07 2.5E-11 75.6 9.8 91 8-103 82-179 (196)
105 1kk1_A EIF2gamma; initiation o 98.5 5.9E-07 2E-11 86.1 10.2 98 4-103 96-200 (410)
106 2gf9_A RAS-related protein RAB 98.5 2.2E-07 7.7E-12 78.6 6.4 63 166-233 20-83 (189)
107 3tw8_B RAS-related protein RAB 98.4 6.1E-07 2.1E-11 74.8 8.9 87 10-103 77-171 (181)
108 2fg5_A RAB-22B, RAS-related pr 98.4 3.3E-07 1.1E-11 77.9 7.3 90 9-103 90-186 (192)
109 2lkc_A Translation initiation 98.4 4.7E-07 1.6E-11 75.4 8.1 91 11-104 75-172 (178)
110 2a9k_A RAS-related protein RAL 98.4 4.3E-07 1.5E-11 76.2 7.8 91 8-103 83-181 (187)
111 2www_A Methylmalonic aciduria 98.4 7.5E-08 2.6E-12 90.4 3.4 25 166-190 72-96 (349)
112 1ksh_A ARF-like protein 2; sma 98.4 3.5E-07 1.2E-11 77.1 7.2 58 166-232 16-73 (186)
113 1fzq_A ADP-ribosylation factor 98.4 7.3E-07 2.5E-11 75.1 9.2 93 8-102 77-177 (181)
114 1wms_A RAB-9, RAB9, RAS-relate 98.4 2.9E-07 9.8E-12 76.7 6.4 61 167-232 6-67 (177)
115 3qq5_A Small GTP-binding prote 98.4 7.8E-08 2.7E-12 92.3 3.3 64 166-234 32-96 (423)
116 1s0u_A EIF-2-gamma, translatio 98.4 6.5E-07 2.2E-11 85.7 9.7 98 4-103 94-198 (408)
117 2il1_A RAB12; G-protein, GDP, 98.4 5E-07 1.7E-11 76.8 7.9 91 7-102 91-189 (192)
118 3tkl_A RAS-related protein RAB 98.4 3.4E-07 1.2E-11 77.7 6.8 62 166-233 14-77 (196)
119 2gf9_A RAS-related protein RAB 98.4 5.1E-07 1.7E-11 76.4 7.9 89 10-103 90-185 (189)
120 1kao_A RAP2A; GTP-binding prot 98.4 2.9E-07 9.8E-12 75.6 6.1 59 168-233 3-63 (167)
121 3zvr_A Dynamin-1; hydrolase, D 98.4 5.2E-07 1.8E-11 92.1 9.2 26 167-192 50-75 (772)
122 1z08_A RAS-related protein RAB 98.4 4.3E-07 1.5E-11 75.0 7.1 60 167-232 5-66 (170)
123 1c1y_A RAS-related protein RAP 98.4 7.2E-07 2.5E-11 73.3 8.4 88 9-101 69-165 (167)
124 2hxs_A RAB-26, RAS-related pro 98.4 6.7E-07 2.3E-11 74.5 8.3 91 8-103 73-173 (178)
125 2qu8_A Putative nucleolar GTP- 98.4 1.1E-06 3.9E-11 76.8 10.1 93 9-103 103-205 (228)
126 1upt_A ARL1, ADP-ribosylation 98.4 4E-07 1.4E-11 75.3 6.8 59 166-233 5-63 (171)
127 1moz_A ARL1, ADP-ribosylation 98.4 4.2E-07 1.4E-11 76.2 7.0 92 10-103 81-180 (183)
128 1kao_A RAP2A; GTP-binding prot 98.4 4.1E-07 1.4E-11 74.6 6.8 90 8-102 68-165 (167)
129 3geh_A MNME, tRNA modification 98.4 1.6E-07 5.5E-12 91.2 4.9 91 5-103 294-384 (462)
130 1z0f_A RAB14, member RAS oncog 98.4 3.1E-07 1.1E-11 76.5 6.0 62 166-232 13-75 (179)
131 2h17_A ADP-ribosylation factor 98.4 2.8E-07 9.4E-12 77.6 5.7 59 166-233 19-77 (181)
132 1fzq_A ADP-ribosylation factor 98.4 2.4E-07 8.1E-12 78.2 5.1 58 166-232 14-71 (181)
133 1ega_A Protein (GTP-binding pr 98.4 3.9E-07 1.3E-11 83.7 6.9 92 9-105 83-177 (301)
134 1z2a_A RAS-related protein RAB 98.4 3.1E-07 1.1E-11 75.6 5.8 62 167-233 4-66 (168)
135 1ek0_A Protein (GTP-binding pr 98.4 4.6E-07 1.6E-11 74.6 6.8 89 8-101 69-167 (170)
136 1z2a_A RAS-related protein RAB 98.4 6.8E-07 2.3E-11 73.5 7.8 88 9-101 72-165 (168)
137 2bme_A RAB4A, RAS-related prot 98.4 4.5E-07 1.5E-11 76.2 6.8 61 166-232 8-70 (186)
138 3gj0_A GTP-binding nuclear pro 98.4 1.3E-07 4.3E-12 82.4 3.4 64 166-233 13-76 (221)
139 1u8z_A RAS-related protein RAL 98.4 5.2E-07 1.8E-11 74.1 7.1 60 167-233 3-64 (168)
140 1g16_A RAS-related protein SEC 98.4 2.9E-07 1E-11 75.9 5.5 60 168-233 3-64 (170)
141 3reg_A RHO-like small GTPase; 98.4 6.2E-07 2.1E-11 76.2 7.7 90 10-103 90-188 (194)
142 1zbd_A Rabphilin-3A; G protein 98.4 3.9E-07 1.3E-11 78.0 6.4 61 167-232 7-68 (203)
143 3clv_A RAB5 protein, putative; 98.4 5.7E-07 1.9E-11 76.4 7.4 26 166-191 5-30 (208)
144 1z0j_A RAB-22, RAS-related pro 98.4 5.8E-07 2E-11 74.1 7.2 90 8-102 72-168 (170)
145 2j69_A Bacterial dynamin-like 98.4 1.6E-07 5.6E-12 95.8 4.5 37 166-207 67-103 (695)
146 1f6b_A SAR1; gtpases, N-termin 98.4 6.1E-07 2.1E-11 76.8 7.5 89 10-100 88-196 (198)
147 2hup_A RAS-related protein RAB 98.4 1.1E-06 3.8E-11 75.3 9.1 92 8-103 95-193 (201)
148 3dz8_A RAS-related protein RAB 98.4 9.3E-07 3.2E-11 74.9 8.6 91 8-103 89-186 (191)
149 2y8e_A RAB-protein 6, GH09086P 98.4 3.9E-07 1.3E-11 75.9 6.1 61 167-233 13-75 (179)
150 2a5j_A RAS-related protein RAB 98.4 8.9E-07 3E-11 75.1 8.4 89 9-102 88-183 (191)
151 2ce2_X GTPase HRAS; signaling 98.4 1.8E-06 6.1E-11 70.6 10.0 89 9-102 69-164 (166)
152 2e87_A Hypothetical protein PH 98.4 2E-06 6.9E-11 80.8 11.6 86 13-103 245-336 (357)
153 2fn4_A P23, RAS-related protei 98.4 5.5E-07 1.9E-11 75.0 6.9 62 166-234 7-70 (181)
154 2erx_A GTP-binding protein DI- 98.4 9.7E-07 3.3E-11 72.8 8.4 91 8-103 68-167 (172)
155 3cph_A RAS-related protein SEC 98.4 4E-07 1.4E-11 78.3 6.2 62 166-233 18-81 (213)
156 2f7s_A C25KG, RAS-related prot 98.4 8.4E-07 2.9E-11 76.7 8.2 89 8-103 101-199 (217)
157 3q85_A GTP-binding protein REM 98.4 9.6E-07 3.3E-11 72.9 8.2 87 11-102 72-166 (169)
158 2efe_B Small GTP-binding prote 98.4 3.8E-07 1.3E-11 76.2 5.8 62 166-232 10-72 (181)
159 2p5s_A RAS and EF-hand domain 98.4 2.9E-07 1E-11 78.7 5.2 63 166-233 26-89 (199)
160 3q72_A GTP-binding protein RAD 98.4 7.5E-07 2.6E-11 73.3 7.5 88 10-102 68-163 (166)
161 1zj6_A ADP-ribosylation factor 98.4 5.4E-07 1.8E-11 76.1 6.8 59 166-233 14-72 (187)
162 1x3s_A RAS-related protein RAB 98.4 3.3E-07 1.1E-11 77.6 5.3 62 167-233 14-76 (195)
163 2fu5_C RAS-related protein RAB 98.4 7.1E-07 2.4E-11 74.9 7.4 87 10-103 76-171 (183)
164 4bas_A ADP-ribosylation factor 98.4 5.2E-07 1.8E-11 76.7 6.6 59 166-233 15-75 (199)
165 2bov_A RAla, RAS-related prote 98.4 6.6E-07 2.2E-11 76.5 7.2 61 166-233 12-74 (206)
166 2oil_A CATX-8, RAS-related pro 98.4 9.6E-07 3.3E-11 74.8 8.2 90 8-102 91-187 (193)
167 2bcg_Y Protein YP2, GTP-bindin 98.4 1.1E-06 3.7E-11 75.4 8.6 89 10-103 76-171 (206)
168 2bme_A RAB4A, RAS-related prot 98.4 9.8E-07 3.4E-11 74.1 8.2 91 8-103 76-173 (186)
169 1zbd_A Rabphilin-3A; G protein 98.4 1.1E-06 3.6E-11 75.2 8.4 90 8-102 74-170 (203)
170 4dsu_A GTPase KRAS, isoform 2B 98.4 1.4E-06 4.6E-11 73.3 8.9 90 9-103 70-166 (189)
171 3cph_A RAS-related protein SEC 98.3 1.3E-06 4.6E-11 75.0 9.0 90 9-103 87-182 (213)
172 2erx_A GTP-binding protein DI- 98.3 8.7E-07 3E-11 73.1 7.4 60 168-233 3-63 (172)
173 1moz_A ARL1, ADP-ribosylation 98.3 3.9E-07 1.3E-11 76.4 5.2 59 166-233 16-74 (183)
174 2fn4_A P23, RAS-related protei 98.3 1E-06 3.4E-11 73.4 7.8 90 9-103 75-172 (181)
175 1z08_A RAS-related protein RAB 98.3 6.5E-07 2.2E-11 73.9 6.5 85 11-102 75-168 (170)
176 1vg8_A RAS-related protein RAB 98.3 7.3E-07 2.5E-11 76.3 7.1 62 166-233 6-69 (207)
177 2ged_A SR-beta, signal recogni 98.3 4.3E-07 1.5E-11 77.0 5.5 59 166-234 46-104 (193)
178 2ew1_A RAS-related protein RAB 98.3 1.3E-06 4.3E-11 75.2 8.5 91 8-103 92-189 (201)
179 2atx_A Small GTP binding prote 98.3 1.3E-06 4.3E-11 74.2 8.4 88 10-101 85-191 (194)
180 1c1y_A RAS-related protein RAP 98.3 6.9E-07 2.4E-11 73.4 6.5 60 168-234 3-64 (167)
181 3t5g_A GTP-binding protein RHE 98.3 7.9E-07 2.7E-11 74.4 6.9 61 167-234 5-67 (181)
182 1m2o_B GTP-binding protein SAR 98.3 5.3E-07 1.8E-11 76.6 5.9 88 10-99 86-188 (190)
183 2o52_A RAS-related protein RAB 98.3 1E-06 3.6E-11 75.4 7.8 90 9-103 92-188 (200)
184 2il1_A RAB12; G-protein, GDP, 98.3 4.6E-07 1.6E-11 77.1 5.4 62 166-232 24-86 (192)
185 2o52_A RAS-related protein RAB 98.3 4.7E-07 1.6E-11 77.5 5.6 61 166-232 23-85 (200)
186 3c5h_A Glucocorticoid receptor 98.3 8.4E-07 2.9E-11 79.3 7.4 83 14-101 162-253 (255)
187 3gj0_A GTP-binding nuclear pro 98.3 4.4E-07 1.5E-11 78.9 5.4 90 10-104 83-176 (221)
188 4gzl_A RAS-related C3 botulinu 98.3 5.8E-07 2E-11 77.3 6.0 87 10-100 97-202 (204)
189 2p5s_A RAS and EF-hand domain 98.3 1.3E-06 4.5E-11 74.6 8.2 90 8-102 94-196 (199)
190 1m2o_B GTP-binding protein SAR 98.3 6.8E-07 2.3E-11 75.9 6.4 58 167-233 22-79 (190)
191 2nzj_A GTP-binding protein REM 98.3 1.6E-06 5.3E-11 71.9 8.5 89 10-103 73-169 (175)
192 2a9k_A RAS-related protein RAL 98.3 8.7E-07 3E-11 74.3 7.0 60 167-233 17-78 (187)
193 1mh1_A RAC1; GTP-binding, GTPa 98.3 6.1E-07 2.1E-11 75.2 6.0 91 10-104 72-181 (186)
194 4djt_A GTP-binding nuclear pro 98.3 3.3E-07 1.1E-11 79.4 4.4 64 166-234 9-74 (218)
195 1z06_A RAS-related protein RAB 98.3 6.2E-07 2.1E-11 75.8 6.1 62 166-232 18-80 (189)
196 2bov_A RAla, RAS-related prote 98.3 1.6E-06 5.3E-11 74.1 8.6 91 8-103 79-177 (206)
197 3qq5_A Small GTP-binding prote 98.3 3.4E-07 1.2E-11 87.9 4.8 92 5-104 104-197 (423)
198 2gco_A H9, RHO-related GTP-bin 98.3 1.2E-06 4.3E-11 74.9 8.0 88 10-101 92-198 (201)
199 3bwd_D RAC-like GTP-binding pr 98.3 7.6E-07 2.6E-11 74.4 6.5 88 10-101 75-179 (182)
200 3q85_A GTP-binding protein REM 98.3 7.3E-07 2.5E-11 73.6 6.2 60 169-234 3-64 (169)
201 2gf0_A GTP-binding protein DI- 98.3 1.5E-06 5.1E-11 73.8 8.2 91 8-103 73-171 (199)
202 4gzl_A RAS-related C3 botulinu 98.3 8.7E-07 3E-11 76.2 6.8 61 166-233 28-90 (204)
203 2q3h_A RAS homolog gene family 98.3 8.6E-07 2.9E-11 75.7 6.7 63 165-234 17-81 (201)
204 3bc1_A RAS-related protein RAB 98.3 1.2E-06 3.9E-11 73.9 7.4 25 166-190 9-33 (195)
205 2x77_A ADP-ribosylation factor 98.3 6.5E-07 2.2E-11 75.7 5.8 58 167-233 21-78 (189)
206 1r8s_A ADP-ribosylation factor 98.3 8E-07 2.7E-11 73.0 6.2 55 169-232 1-55 (164)
207 3con_A GTPase NRAS; structural 98.3 9.3E-07 3.2E-11 74.7 6.7 60 167-233 20-81 (190)
208 2bcg_Y Protein YP2, GTP-bindin 98.3 6.5E-07 2.2E-11 76.8 5.8 62 167-234 7-70 (206)
209 3kkq_A RAS-related protein M-R 98.3 1.2E-06 4.1E-11 73.4 7.2 62 165-233 15-78 (183)
210 2ywe_A GTP-binding protein LEP 98.3 2.4E-06 8.1E-11 85.4 10.4 98 4-104 86-185 (600)
211 3con_A GTPase NRAS; structural 98.3 2.2E-06 7.4E-11 72.3 8.8 90 9-103 87-183 (190)
212 1lnz_A SPO0B-associated GTP-bi 98.3 6.3E-07 2.2E-11 83.7 5.8 93 6-104 228-331 (342)
213 2atv_A RERG, RAS-like estrogen 98.3 2.2E-06 7.5E-11 72.9 8.8 90 8-102 92-190 (196)
214 1wms_A RAB-9, RAB9, RAS-relate 98.3 3.5E-06 1.2E-10 70.0 9.9 90 8-102 73-173 (177)
215 2a5j_A RAS-related protein RAB 98.3 6.9E-07 2.4E-11 75.8 5.5 63 166-233 19-82 (191)
216 3cbq_A GTP-binding protein REM 98.3 5.5E-07 1.9E-11 77.0 4.9 62 166-233 21-84 (195)
217 1vg8_A RAS-related protein RAB 98.3 2.3E-06 8E-11 73.1 8.9 89 10-103 76-175 (207)
218 3j2k_7 ERF3, eukaryotic polype 98.3 8.2E-07 2.8E-11 85.8 6.6 67 166-232 15-106 (439)
219 3o47_A ADP-ribosylation factor 98.3 1.6E-06 5.6E-11 80.5 8.4 92 9-102 227-326 (329)
220 1f6b_A SAR1; gtpases, N-termin 98.3 6.5E-07 2.2E-11 76.6 5.2 58 167-233 24-81 (198)
221 3dz8_A RAS-related protein RAB 98.3 1.7E-07 6E-12 79.5 1.5 61 166-231 21-82 (191)
222 3izq_1 HBS1P, elongation facto 98.3 6.3E-07 2.2E-11 90.1 5.7 69 165-233 164-257 (611)
223 2fu5_C RAS-related protein RAB 98.3 3.3E-07 1.1E-11 76.9 3.1 61 167-233 7-69 (183)
224 2ew1_A RAS-related protein RAB 98.3 1.1E-06 3.7E-11 75.6 6.4 61 166-232 24-86 (201)
225 2h57_A ADP-ribosylation factor 98.3 9.4E-07 3.2E-11 74.8 5.9 61 166-233 19-79 (190)
226 2ce2_X GTPase HRAS; signaling 98.3 9.4E-07 3.2E-11 72.2 5.7 59 168-233 3-63 (166)
227 1ky3_A GTP-binding protein YPT 98.3 7.6E-07 2.6E-11 74.3 5.2 62 166-232 6-69 (182)
228 3oes_A GTPase rhebl1; small GT 98.3 9.7E-07 3.3E-11 75.5 5.9 62 166-234 22-85 (201)
229 2atv_A RERG, RAS-like estrogen 98.3 1.4E-06 4.8E-11 74.1 6.8 62 166-233 26-88 (196)
230 2hxs_A RAB-26, RAS-related pro 98.3 4.5E-07 1.5E-11 75.6 3.6 64 166-234 4-69 (178)
231 3reg_A RHO-like small GTPase; 98.3 1.4E-06 4.8E-11 74.0 6.7 60 166-232 21-82 (194)
232 3tr5_A RF-3, peptide chain rel 98.2 3.8E-06 1.3E-10 82.9 10.4 53 6-58 97-150 (528)
233 3iby_A Ferrous iron transport 98.2 3.7E-07 1.3E-11 81.8 2.8 81 13-100 82-164 (256)
234 3lvq_E ARF-GAP with SH3 domain 98.2 1.5E-06 5.3E-11 85.2 7.4 94 9-104 384-485 (497)
235 2q3h_A RAS homolog gene family 98.2 1.9E-06 6.6E-11 73.4 7.1 90 10-103 87-195 (201)
236 2b6h_A ADP-ribosylation factor 98.2 1.2E-06 4E-11 74.6 5.7 59 166-233 27-85 (192)
237 2yc2_C IFT27, small RAB-relate 98.2 1.4E-06 4.7E-11 74.5 6.2 89 9-102 91-191 (208)
238 2j0v_A RAC-like GTP-binding pr 98.2 1.5E-06 5E-11 74.9 6.4 90 10-103 76-180 (212)
239 2iwr_A Centaurin gamma 1; ANK 98.2 1.1E-06 3.7E-11 73.4 5.4 60 167-233 6-66 (178)
240 3j2k_7 ERF3, eukaryotic polype 98.2 4.4E-06 1.5E-10 80.7 10.3 91 3-95 107-217 (439)
241 3t34_A Dynamin-related protein 98.2 2.4E-06 8.4E-11 80.3 8.3 24 169-192 35-58 (360)
242 3cpj_B GTP-binding protein YPT 98.2 1.2E-06 4E-11 76.4 5.7 89 10-103 81-176 (223)
243 3q3j_B RHO-related GTP-binding 98.2 1.3E-06 4.3E-11 75.8 5.9 90 10-103 94-203 (214)
244 1mh1_A RAC1; GTP-binding, GTPa 98.2 1.6E-06 5.6E-11 72.6 6.4 24 167-190 4-27 (186)
245 2wji_A Ferrous iron transport 98.2 7.1E-07 2.4E-11 73.9 4.1 82 13-101 80-163 (165)
246 1udx_A The GTP-binding protein 98.2 1.2E-06 4.2E-11 83.8 6.2 61 167-233 156-217 (416)
247 2fh5_B SR-beta, signal recogni 98.2 1.6E-06 5.6E-11 74.7 6.4 58 167-232 6-65 (214)
248 3cbq_A GTP-binding protein REM 98.2 5.1E-06 1.8E-10 70.8 9.4 89 10-103 92-188 (195)
249 3c5c_A RAS-like protein 12; GD 98.2 2.3E-06 7.8E-11 72.4 7.1 62 166-234 19-82 (187)
250 1ky3_A GTP-binding protein YPT 98.2 4.6E-06 1.6E-10 69.4 8.9 88 10-102 77-177 (182)
251 3ihw_A Centg3; RAS, centaurin, 98.2 3.1E-06 1.1E-10 71.4 7.9 87 11-102 82-179 (184)
252 1zd9_A ADP-ribosylation factor 98.2 1.5E-06 5.1E-11 73.5 5.9 59 166-232 20-78 (188)
253 2fv8_A H6, RHO-related GTP-bin 98.2 2.4E-06 8.3E-11 73.4 7.4 89 10-102 92-199 (207)
254 2gf0_A GTP-binding protein DI- 98.2 1.8E-06 6.1E-11 73.3 6.4 62 166-233 6-68 (199)
255 3i8s_A Ferrous iron transport 98.2 2.1E-07 7.3E-12 84.2 0.6 86 11-103 82-169 (274)
256 2j1l_A RHO-related GTP-binding 98.2 2.2E-06 7.6E-11 74.2 6.7 90 10-103 101-209 (214)
257 2elf_A Protein translation elo 98.2 6.9E-06 2.4E-10 77.5 10.6 97 3-103 72-180 (370)
258 2gco_A H9, RHO-related GTP-bin 98.2 1.4E-06 4.7E-11 74.6 5.3 61 166-232 23-84 (201)
259 3oes_A GTPase rhebl1; small GT 98.2 1.5E-06 5.3E-11 74.3 5.5 90 10-104 91-188 (201)
260 2c78_A Elongation factor TU-A; 98.2 2.2E-06 7.5E-11 81.9 7.0 99 3-103 87-212 (405)
261 2cjw_A GTP-binding protein GEM 98.2 1.2E-06 4.1E-11 74.6 4.7 61 167-233 5-68 (192)
262 2yc2_C IFT27, small RAB-relate 98.2 8.3E-07 2.8E-11 75.9 3.6 61 167-232 19-84 (208)
263 3p26_A Elongation factor 1 alp 98.2 8.9E-07 3.1E-11 86.6 3.9 68 166-233 31-123 (483)
264 3p26_A Elongation factor 1 alp 98.2 4.1E-06 1.4E-10 81.9 8.5 88 3-92 123-227 (483)
265 1zun_B Sulfate adenylate trans 98.2 4.2E-06 1.4E-10 80.7 8.5 87 4-92 117-213 (434)
266 1m7b_A RND3/RHOE small GTP-bin 98.1 2.8E-06 9.6E-11 71.5 6.3 61 166-232 5-66 (184)
267 3q5d_A Atlastin-1; G protein, 98.1 7.4E-07 2.5E-11 85.8 3.0 68 167-235 66-154 (447)
268 3bwd_D RAC-like GTP-binding pr 98.1 1.1E-06 3.9E-11 73.3 3.8 61 166-233 6-68 (182)
269 3llu_A RAS-related GTP-binding 98.1 2.8E-06 9.4E-11 72.4 6.3 62 166-233 18-81 (196)
270 2fv8_A H6, RHO-related GTP-bin 98.1 1.9E-06 6.4E-11 74.1 5.2 61 167-233 24-85 (207)
271 3cpj_B GTP-binding protein YPT 98.1 2E-06 6.9E-11 74.9 5.4 63 166-233 11-74 (223)
272 2g3y_A GTP-binding protein GEM 98.1 2.7E-06 9.2E-11 73.9 6.0 60 167-232 36-98 (211)
273 3l0i_B RAS-related protein RAB 98.1 3E-07 1E-11 78.7 -0.2 62 166-233 31-94 (199)
274 2qtf_A Protein HFLX, GTP-bindi 98.1 6.9E-06 2.4E-10 77.3 9.1 98 4-104 247-355 (364)
275 3mca_A HBS1, elongation factor 98.1 5.2E-07 1.8E-11 90.4 1.5 69 165-233 174-267 (592)
276 2hup_A RAS-related protein RAB 98.1 2.2E-06 7.4E-11 73.5 5.2 61 166-232 27-89 (201)
277 2cxx_A Probable GTP-binding pr 98.1 1.8E-05 6.3E-10 66.3 10.9 90 12-104 80-185 (190)
278 2iwr_A Centaurin gamma 1; ANK 98.1 6.4E-06 2.2E-10 68.6 7.9 88 10-102 68-168 (178)
279 2j1l_A RHO-related GTP-binding 98.1 3.4E-06 1.2E-10 73.0 6.3 61 166-233 32-94 (214)
280 2j0v_A RAC-like GTP-binding pr 98.1 3.9E-06 1.3E-10 72.2 6.5 61 166-233 7-69 (212)
281 3a1s_A Iron(II) transport prot 98.1 2.9E-06 9.9E-11 76.0 5.9 83 13-102 82-166 (258)
282 2f7s_A C25KG, RAS-related prot 98.1 2.3E-06 7.7E-11 74.0 4.9 25 166-190 23-47 (217)
283 4dkx_A RAS-related protein RAB 98.1 7.6E-06 2.6E-10 71.3 8.2 88 10-102 81-175 (216)
284 1d2e_A Elongation factor TU (E 98.1 5.5E-06 1.9E-10 79.0 7.8 98 4-103 79-195 (397)
285 3lvq_E ARF-GAP with SH3 domain 98.1 3.7E-06 1.3E-10 82.5 6.6 58 167-233 321-378 (497)
286 1z06_A RAS-related protein RAB 98.1 6.2E-06 2.1E-10 69.6 7.2 91 8-101 87-186 (189)
287 3th5_A RAS-related C3 botulinu 97.4 4.5E-07 1.5E-11 77.8 0.0 86 10-99 97-201 (204)
288 3q3j_B RHO-related GTP-binding 98.1 5E-06 1.7E-10 72.0 6.7 61 166-232 25-86 (214)
289 1gwn_A RHO-related GTP-binding 98.1 4.4E-06 1.5E-10 71.9 6.2 61 166-232 26-87 (205)
290 1g7s_A Translation initiation 98.1 1.1E-05 3.7E-10 80.8 9.8 91 11-103 90-218 (594)
291 2atx_A Small GTP binding prote 98.1 3.6E-06 1.2E-10 71.3 5.5 61 166-233 16-78 (194)
292 1nrj_B SR-beta, signal recogni 98.1 3.6E-06 1.2E-10 72.8 5.5 58 166-233 10-67 (218)
293 1jwy_B Dynamin A GTPase domain 98.1 3.8E-06 1.3E-10 77.1 6.0 97 5-105 158-264 (315)
294 3c5c_A RAS-like protein 12; GD 98.1 5.4E-06 1.9E-10 70.0 6.5 88 9-101 86-184 (187)
295 3l0i_B RAS-related protein RAB 98.1 5E-07 1.7E-11 77.2 -0.1 85 11-102 102-195 (199)
296 3izy_P Translation initiation 98.1 6.5E-07 2.2E-11 88.3 0.7 61 167-233 3-64 (537)
297 1udx_A The GTP-binding protein 98.1 7.5E-06 2.6E-10 78.3 8.0 92 8-104 229-326 (416)
298 2zej_A Dardarin, leucine-rich 98.1 4.5E-06 1.5E-10 70.3 5.7 23 168-190 2-24 (184)
299 3t1o_A Gliding protein MGLA; G 98.0 1.5E-06 5E-11 73.5 2.4 25 166-190 12-36 (198)
300 2qm8_A GTPase/ATPase; G protei 98.0 8.3E-07 2.9E-11 82.8 0.9 25 166-190 53-77 (337)
301 3p32_A Probable GTPase RV1496/ 98.0 4E-06 1.4E-10 78.7 5.5 89 10-103 188-284 (355)
302 3tr5_A RF-3, peptide chain rel 98.0 9.7E-07 3.3E-11 87.2 0.9 68 167-234 12-95 (528)
303 3o47_A ADP-ribosylation factor 98.0 3.9E-06 1.3E-10 77.9 4.9 58 166-232 163-220 (329)
304 1m7b_A RND3/RHOE small GTP-bin 98.0 5.2E-06 1.8E-10 69.8 5.1 88 10-101 74-181 (184)
305 3ihw_A Centg3; RAS, centaurin, 98.0 7.9E-06 2.7E-10 68.9 6.2 26 166-191 18-43 (184)
306 2f9l_A RAB11B, member RAS onco 98.0 8E-06 2.7E-10 69.7 6.1 60 168-233 5-66 (199)
307 2wkq_A NPH1-1, RAS-related C3 98.0 7.5E-06 2.6E-10 75.4 6.3 88 10-101 222-328 (332)
308 1oix_A RAS-related protein RAB 98.0 1E-05 3.5E-10 68.7 6.7 61 167-233 28-90 (191)
309 3t5d_A Septin-7; GTP-binding p 98.0 7.2E-06 2.5E-10 74.0 5.9 84 15-103 116-204 (274)
310 2xex_A Elongation factor G; GT 98.0 4.5E-06 1.5E-10 85.2 4.9 68 167-234 9-88 (693)
311 2qag_A Septin-2, protein NEDD5 98.0 6.1E-06 2.1E-10 77.6 5.3 26 166-191 35-60 (361)
312 2wjg_A FEOB, ferrous iron tran 98.0 3.5E-06 1.2E-10 70.9 3.3 85 13-104 84-170 (188)
313 1zo1_I IF2, translation initia 97.9 1.9E-06 6.4E-11 84.3 1.6 61 167-233 3-63 (501)
314 1gwn_A RHO-related GTP-binding 97.9 6.4E-06 2.2E-10 70.9 4.8 88 10-101 95-202 (205)
315 3dpu_A RAB family protein; roc 97.9 1.1E-05 3.8E-10 79.9 6.9 88 10-104 117-209 (535)
316 3b1v_A Ferrous iron uptake tra 97.9 4.5E-06 1.5E-10 75.4 3.7 80 13-102 79-163 (272)
317 3k53_A Ferrous iron transport 97.9 5.8E-06 2E-10 74.5 4.4 85 12-103 79-166 (271)
318 1wb1_A Translation elongation 97.9 5.8E-06 2E-10 80.8 4.6 65 167-231 18-83 (482)
319 3th5_A RAS-related C3 botulinu 97.2 1.3E-06 4.4E-11 74.8 0.0 61 166-233 28-90 (204)
320 2g3y_A GTP-binding protein GEM 97.9 1.9E-05 6.4E-10 68.5 7.3 86 12-102 109-202 (211)
321 2wkq_A NPH1-1, RAS-related C3 97.9 1.4E-05 4.6E-10 73.6 6.8 61 166-233 153-215 (332)
322 3dpu_A RAB family protein; roc 97.9 9.3E-06 3.2E-10 80.4 6.0 64 166-233 39-110 (535)
323 1jny_A EF-1-alpha, elongation 97.9 3.1E-05 1.1E-09 74.6 9.5 87 3-91 96-201 (435)
324 1yrb_A ATP(GTP)binding protein 97.9 2.4E-05 8.2E-10 69.6 8.0 94 8-105 132-259 (262)
325 2c78_A Elongation factor TU-A; 97.9 5.6E-06 1.9E-10 79.1 4.1 68 166-233 9-87 (405)
326 3zvr_A Dynamin-1; hydrolase, D 97.9 5.3E-06 1.8E-10 84.7 3.8 89 13-105 186-283 (772)
327 2aka_B Dynamin-1; fusion prote 97.9 7.6E-06 2.6E-10 74.4 4.4 89 7-99 154-249 (299)
328 3llu_A RAS-related GTP-binding 97.9 2.5E-05 8.4E-10 66.4 7.3 89 9-100 90-194 (196)
329 1f60_A Elongation factor EEF1A 97.9 3E-06 1E-10 82.4 1.6 66 167-232 6-96 (458)
330 1d2e_A Elongation factor TU (E 97.9 1E-05 3.4E-10 77.2 5.2 66 167-232 2-77 (397)
331 4dkx_A RAS-related protein RAB 97.9 1.2E-05 4.2E-10 70.0 5.2 61 167-233 12-74 (216)
332 2p67_A LAO/AO transport system 97.9 1E-05 3.5E-10 75.5 4.9 25 166-190 54-78 (341)
333 3avx_A Elongation factor TS, e 97.9 5.5E-05 1.9E-09 80.1 10.8 99 4-102 372-485 (1289)
334 2h5e_A Peptide chain release f 97.8 1.1E-05 3.7E-10 79.7 5.1 68 167-234 12-95 (529)
335 1zun_B Sulfate adenylate trans 97.8 1.3E-05 4.5E-10 77.2 5.5 25 166-190 22-46 (434)
336 3sjy_A Translation initiation 97.8 9.4E-06 3.2E-10 77.5 4.3 26 166-191 6-31 (403)
337 2elf_A Protein translation elo 97.8 8.9E-06 3E-10 76.7 3.6 50 170-233 23-72 (370)
338 3izy_P Translation initiation 97.8 6.3E-06 2.1E-10 81.3 2.4 91 10-102 71-167 (537)
339 2j69_A Bacterial dynamin-like 97.8 4.2E-05 1.4E-09 78.0 8.5 96 6-103 192-325 (695)
340 2qag_B Septin-6, protein NEDD5 97.8 3.4E-05 1.2E-09 73.7 7.4 65 168-234 42-108 (427)
341 2fh5_B SR-beta, signal recogni 97.8 3.4E-05 1.2E-09 66.3 6.6 91 10-100 74-213 (214)
342 3izq_1 HBS1P, elongation facto 97.8 2.1E-05 7.3E-10 79.0 5.7 89 3-93 257-362 (611)
343 1r5b_A Eukaryotic peptide chai 97.8 4E-05 1.4E-09 74.5 7.5 88 4-93 134-242 (467)
344 1dar_A EF-G, elongation factor 97.7 1.4E-05 4.8E-10 81.5 4.2 68 166-233 10-89 (691)
345 2cjw_A GTP-binding protein GEM 97.7 6.2E-05 2.1E-09 63.8 7.6 86 12-102 78-171 (192)
346 1kk1_A EIF2gamma; initiation o 97.7 2.2E-05 7.7E-10 75.0 5.3 43 166-211 8-50 (410)
347 1jny_A EF-1-alpha, elongation 97.7 1.1E-05 3.8E-10 77.8 2.9 67 167-233 5-96 (435)
348 3p32_A Probable GTPase RV1496/ 97.7 2.3E-05 8E-10 73.4 4.5 25 166-190 77-101 (355)
349 1zo1_I IF2, translation initia 97.7 1.6E-05 5.3E-10 77.8 3.3 86 11-99 71-163 (501)
350 3mca_A HBS1, elongation factor 97.7 2E-05 6.8E-10 78.9 4.1 91 10-102 274-396 (592)
351 1pui_A ENGB, probable GTP-bind 97.7 0.00016 5.5E-09 61.7 9.4 89 13-104 107-200 (210)
352 3sop_A Neuronal-specific septi 97.7 2.1E-05 7.1E-10 70.9 3.8 24 168-191 2-25 (270)
353 1f60_A Elongation factor EEF1A 97.7 2.6E-05 8.8E-10 75.7 4.7 88 3-92 97-201 (458)
354 1s0u_A EIF-2-gamma, translatio 97.7 4.8E-05 1.6E-09 72.7 6.2 43 166-211 6-48 (408)
355 2h5e_A Peptide chain release f 97.7 0.00018 6E-09 71.0 10.4 53 6-58 97-150 (529)
356 2xtp_A GTPase IMAP family memb 97.6 1.4E-05 4.8E-10 71.3 2.0 94 6-104 97-209 (260)
357 2www_A Methylmalonic aciduria 97.6 0.00011 3.7E-09 68.7 7.8 88 10-102 183-278 (349)
358 2zej_A Dardarin, leucine-rich 97.6 6.9E-05 2.4E-09 62.9 5.8 91 11-103 76-178 (184)
359 2wsm_A Hydrogenase expression/ 97.6 6.2E-05 2.1E-09 65.0 5.5 82 15-103 130-214 (221)
360 2ywe_A GTP-binding protein LEP 97.6 3E-05 1E-09 77.5 3.6 66 168-233 6-85 (600)
361 2dy1_A Elongation factor G; tr 97.6 0.00022 7.4E-09 72.4 10.0 52 4-55 87-139 (665)
362 3lxw_A GTPase IMAP family memb 97.6 0.00015 5E-09 64.3 7.7 87 11-103 102-208 (247)
363 3r7w_A Gtpase1, GTP-binding pr 97.6 0.00013 4.4E-09 66.9 7.5 87 8-97 74-175 (307)
364 2rdo_7 EF-G, elongation factor 97.6 0.00016 5.4E-09 73.9 8.7 67 167-233 9-94 (704)
365 3l82_B F-box only protein 4; T 97.6 0.00033 1.1E-08 60.2 9.1 95 6-102 116-222 (227)
366 3cb4_D GTP-binding protein LEP 97.5 4.4E-05 1.5E-09 76.3 4.3 66 168-233 4-83 (599)
367 1r5b_A Eukaryotic peptide chai 97.5 3.4E-05 1.2E-09 75.0 3.1 68 166-233 41-133 (467)
368 2qag_C Septin-7; cell cycle, c 97.5 0.00014 4.9E-09 69.5 7.0 26 166-191 29-54 (418)
369 2p67_A LAO/AO transport system 97.5 0.00011 3.8E-09 68.4 6.1 87 11-102 166-260 (341)
370 2xex_A Elongation factor G; GT 97.5 0.00043 1.5E-08 70.6 10.6 53 6-58 90-143 (693)
371 1dar_A EF-G, elongation factor 97.5 0.00029 1E-08 71.7 9.3 54 5-58 91-145 (691)
372 1tq4_A IIGP1, interferon-induc 97.4 0.00019 6.6E-09 68.4 7.0 66 167-234 68-133 (413)
373 2qnr_A Septin-2, protein NEDD5 97.4 9.2E-05 3.1E-09 67.7 4.6 26 166-191 16-41 (301)
374 3avx_A Elongation factor TS, e 97.4 9.1E-05 3.1E-09 78.4 4.8 67 166-232 294-370 (1289)
375 3vqt_A RF-3, peptide chain rel 97.4 0.00047 1.6E-08 68.3 9.7 54 5-58 114-168 (548)
376 3lxx_A GTPase IMAP family memb 97.4 0.00031 1.1E-08 61.6 7.1 90 10-103 108-214 (239)
377 1wxq_A GTP-binding protein; st 97.4 9.4E-06 3.2E-10 77.3 -3.2 57 42-103 214-271 (397)
378 2rdo_7 EF-G, elongation factor 97.3 0.00099 3.4E-08 68.0 11.1 53 5-57 96-149 (704)
379 3j25_A Tetracycline resistance 97.3 0.0003 1E-08 71.0 7.0 54 4-57 80-134 (638)
380 1g7s_A Translation initiation 97.3 0.00015 5E-09 72.6 4.5 24 167-190 4-27 (594)
381 2wsm_A Hydrogenase expression/ 97.3 5.7E-05 2E-09 65.2 1.0 42 167-208 29-70 (221)
382 2f9l_A RAB11B, member RAS onco 97.3 0.00085 2.9E-08 56.8 8.3 88 10-102 73-167 (199)
383 2hf9_A Probable hydrogenase ni 97.2 0.00019 6.6E-09 62.1 3.8 25 167-191 37-61 (226)
384 2x2e_A Dynamin-1; nitration, h 97.2 0.0001 3.5E-09 69.0 1.5 86 10-99 162-254 (353)
385 2qag_A Septin-2, protein NEDD5 97.1 0.00041 1.4E-08 65.0 5.4 70 15-89 146-220 (361)
386 3vqt_A RF-3, peptide chain rel 97.1 0.001 3.6E-08 65.8 8.0 132 168-302 31-181 (548)
387 1n0u_A EF-2, elongation factor 97.1 0.00024 8.1E-09 74.0 3.4 24 167-190 18-41 (842)
388 3l2o_B F-box only protein 4; s 97.1 0.0025 8.4E-08 57.5 9.5 95 6-102 201-307 (312)
389 2j37_W Signal recognition part 97.1 0.00034 1.2E-08 68.3 4.3 24 166-189 99-122 (504)
390 2hf9_A Probable hydrogenase ni 97.1 0.00093 3.2E-08 57.7 6.6 58 42-102 164-223 (226)
391 3c5h_A Glucocorticoid receptor 97.0 0.00032 1.1E-08 62.3 3.4 26 165-190 16-50 (255)
392 1cip_A Protein (guanine nucleo 97.0 0.00024 8.2E-09 66.4 2.4 90 11-102 213-343 (353)
393 2dy1_A Elongation factor G; tr 97.0 0.00036 1.2E-08 70.7 3.7 67 167-233 8-86 (665)
394 3r7w_B Gtpase2, GTP-binding pr 97.0 0.0008 2.7E-08 62.0 5.5 59 170-234 1-59 (331)
395 3ney_A 55 kDa erythrocyte memb 96.9 0.00015 5.1E-09 62.0 0.4 59 167-231 18-76 (197)
396 1yrb_A ATP(GTP)binding protein 96.9 0.00039 1.3E-08 61.6 2.7 24 166-189 12-35 (262)
397 1oix_A RAS-related protein RAB 96.9 0.0027 9.3E-08 53.4 7.8 86 10-100 97-189 (191)
398 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00046 1.6E-08 64.7 2.8 90 11-102 221-352 (362)
399 1ko7_A HPR kinase/phosphatase; 96.8 0.0018 6E-08 59.3 6.4 88 41-190 79-166 (314)
400 3t34_A Dynamin-related protein 96.7 0.00099 3.4E-08 62.3 3.9 84 6-96 164-254 (360)
401 2qpt_A EH domain-containing pr 96.7 0.0017 5.8E-08 64.3 5.6 62 6-67 180-243 (550)
402 2qm8_A GTPase/ATPase; G protei 96.6 0.002 7E-08 59.7 5.8 87 11-102 165-260 (337)
403 4fn5_A EF-G 1, elongation fact 96.6 0.0073 2.5E-07 61.7 10.2 53 4-56 98-151 (709)
404 2v3c_C SRP54, signal recogniti 96.6 0.00049 1.7E-08 66.1 0.9 24 167-190 98-121 (432)
405 2qag_C Septin-7; cell cycle, c 96.6 0.0017 5.8E-08 62.0 4.6 83 15-102 139-226 (418)
406 1nrj_B SR-beta, signal recogni 96.5 0.0045 1.5E-07 52.9 6.7 70 13-85 81-168 (218)
407 3r7w_B Gtpase2, GTP-binding pr 96.5 0.0037 1.3E-07 57.5 6.3 88 9-99 67-170 (331)
408 2ged_A SR-beta, signal recogni 96.5 0.0032 1.1E-07 52.6 5.4 60 9-68 113-182 (193)
409 4ido_A Atlastin-1; GTPase, GTP 96.4 0.008 2.7E-07 57.6 7.9 23 167-189 66-88 (457)
410 3szr_A Interferon-induced GTP- 96.3 0.0037 1.3E-07 62.7 5.5 22 170-191 47-68 (608)
411 2xtz_A Guanine nucleotide-bind 96.2 0.0023 7.7E-08 59.8 3.4 89 11-101 203-343 (354)
412 3j25_A Tetracycline resistance 96.2 0.0023 7.9E-08 64.5 3.2 65 170-234 4-80 (638)
413 1azs_C GS-alpha; complex (lyas 96.0 0.0051 1.7E-07 58.3 4.6 24 77-102 361-384 (402)
414 3ohm_A Guanine nucleotide-bind 96.0 0.0052 1.8E-07 56.6 4.5 90 11-102 187-317 (327)
415 4fid_A G protein alpha subunit 95.8 0.0025 8.5E-08 59.1 1.5 94 6-101 175-326 (340)
416 2qnr_A Septin-2, protein NEDD5 95.8 0.013 4.4E-07 53.3 6.2 82 14-101 126-212 (301)
417 1ye8_A Protein THEP1, hypothet 95.7 0.0054 1.8E-07 51.3 2.9 21 170-190 2-22 (178)
418 3dm5_A SRP54, signal recogniti 95.6 0.0056 1.9E-07 58.7 3.3 96 166-272 98-223 (443)
419 1kgd_A CASK, peripheral plasma 95.4 0.0083 2.8E-07 50.0 3.1 23 168-190 5-27 (180)
420 1lvg_A Guanylate kinase, GMP k 95.4 0.0068 2.3E-07 51.4 2.6 22 169-190 5-26 (198)
421 1n0u_A EF-2, elongation factor 95.4 0.013 4.5E-07 60.9 5.2 50 6-55 113-163 (842)
422 1zp6_A Hypothetical protein AT 95.4 0.01 3.4E-07 49.6 3.5 24 167-190 8-31 (191)
423 1ex7_A Guanylate kinase; subst 95.3 0.005 1.7E-07 52.0 1.3 37 171-211 4-40 (186)
424 4fn5_A EF-G 1, elongation fact 95.3 0.031 1.1E-06 57.0 7.4 66 169-234 14-98 (709)
425 3tau_A Guanylate kinase, GMP k 95.2 0.0098 3.3E-07 50.8 3.1 24 167-190 7-30 (208)
426 2dby_A GTP-binding protein; GD 95.2 0.043 1.5E-06 51.3 7.7 41 42-85 201-246 (368)
427 3c8u_A Fructokinase; YP_612366 95.1 0.012 4.1E-07 50.2 3.3 25 166-190 20-44 (208)
428 3tr0_A Guanylate kinase, GMP k 95.1 0.012 4.3E-07 49.6 3.3 23 168-190 7-29 (205)
429 1h65_A Chloroplast outer envel 95.0 0.047 1.6E-06 48.5 6.9 46 13-58 118-170 (270)
430 2qag_B Septin-6, protein NEDD5 94.9 0.013 4.3E-07 56.0 3.2 64 17-83 151-218 (427)
431 2j41_A Guanylate kinase; GMP, 94.8 0.016 5.5E-07 48.9 3.2 25 167-191 5-29 (207)
432 1kag_A SKI, shikimate kinase I 94.7 0.015 5.1E-07 47.6 2.8 23 168-190 4-26 (173)
433 2qor_A Guanylate kinase; phosp 94.7 0.017 5.9E-07 49.0 3.2 24 167-190 11-34 (204)
434 1znw_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 49.2 3.1 24 167-190 19-42 (207)
435 1z6g_A Guanylate kinase; struc 94.7 0.015 5.1E-07 50.1 2.7 24 167-190 22-45 (218)
436 1ly1_A Polynucleotide kinase; 94.7 0.022 7.4E-07 46.8 3.6 22 169-190 3-24 (181)
437 3asz_A Uridine kinase; cytidin 94.5 0.018 6E-07 49.0 2.8 24 167-190 5-28 (211)
438 1s96_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 49.5 3.2 25 166-190 14-38 (219)
439 3a00_A Guanylate kinase, GMP k 94.5 0.017 5.7E-07 48.4 2.6 21 170-190 3-23 (186)
440 4eun_A Thermoresistant glucoki 94.5 0.021 7.3E-07 48.2 3.2 24 167-190 28-51 (200)
441 3lw7_A Adenylate kinase relate 94.3 0.026 8.8E-07 45.9 3.2 20 169-188 2-21 (179)
442 1knq_A Gluconate kinase; ALFA/ 94.2 0.036 1.2E-06 45.5 3.9 24 167-190 7-30 (175)
443 2bbw_A Adenylate kinase 4, AK4 94.2 0.03 1E-06 49.0 3.6 22 168-189 27-48 (246)
444 3cm0_A Adenylate kinase; ATP-b 94.1 0.031 1.1E-06 46.3 3.4 23 168-190 4-26 (186)
445 2wwf_A Thymidilate kinase, put 94.1 0.032 1.1E-06 47.2 3.6 24 167-190 9-32 (212)
446 2qt1_A Nicotinamide riboside k 94.1 0.036 1.2E-06 47.0 3.8 26 165-190 18-43 (207)
447 2rhm_A Putative kinase; P-loop 94.1 0.031 1.1E-06 46.5 3.3 24 167-190 4-27 (193)
448 2pcj_A ABC transporter, lipopr 94.0 0.027 9.1E-07 48.8 2.9 24 167-190 29-52 (224)
449 2bdt_A BH3686; alpha-beta prot 94.0 0.032 1.1E-06 46.5 3.3 21 170-190 4-24 (189)
450 3tif_A Uncharacterized ABC tra 94.0 0.033 1.1E-06 48.7 3.5 25 166-190 29-53 (235)
451 3aez_A Pantothenate kinase; tr 94.0 0.034 1.2E-06 50.8 3.6 25 166-190 88-112 (312)
452 1y63_A LMAJ004144AAA protein; 94.0 0.039 1.3E-06 45.9 3.8 24 167-190 9-32 (184)
453 1jjv_A Dephospho-COA kinase; P 93.9 0.038 1.3E-06 46.7 3.7 22 169-190 3-24 (206)
454 3kb2_A SPBC2 prophage-derived 93.9 0.032 1.1E-06 45.4 3.2 21 170-190 3-23 (173)
455 4gp7_A Metallophosphoesterase; 93.9 0.035 1.2E-06 45.7 3.4 23 167-189 8-30 (171)
456 3uie_A Adenylyl-sulfate kinase 93.9 0.034 1.2E-06 46.9 3.4 25 166-190 23-47 (200)
457 2onk_A Molybdate/tungstate ABC 93.9 0.034 1.2E-06 48.8 3.4 23 169-191 25-47 (240)
458 2cdn_A Adenylate kinase; phosp 93.9 0.041 1.4E-06 46.4 3.8 25 166-190 18-42 (201)
459 1kht_A Adenylate kinase; phosp 93.9 0.036 1.2E-06 45.9 3.4 22 169-190 4-25 (192)
460 2v9p_A Replication protein E1; 93.9 0.03 1E-06 51.0 3.1 25 166-190 124-148 (305)
461 1qhx_A CPT, protein (chloramph 93.9 0.038 1.3E-06 45.4 3.5 22 169-190 4-25 (178)
462 2cbz_A Multidrug resistance-as 93.8 0.037 1.3E-06 48.4 3.5 24 167-190 30-53 (237)
463 2i3b_A HCR-ntpase, human cance 93.8 0.029 9.9E-07 47.3 2.6 21 170-190 3-23 (189)
464 3t61_A Gluconokinase; PSI-biol 93.8 0.037 1.3E-06 46.7 3.3 23 168-190 18-40 (202)
465 1sgw_A Putative ABC transporte 93.8 0.033 1.1E-06 47.9 3.0 24 167-190 34-57 (214)
466 2jaq_A Deoxyguanosine kinase; 93.7 0.038 1.3E-06 46.3 3.3 21 170-190 2-22 (205)
467 1mv5_A LMRA, multidrug resista 93.7 0.042 1.4E-06 48.2 3.6 26 166-191 26-51 (243)
468 2plr_A DTMP kinase, probable t 93.7 0.043 1.5E-06 46.3 3.6 23 168-190 4-26 (213)
469 1cke_A CK, MSSA, protein (cyti 93.7 0.039 1.3E-06 47.3 3.4 23 168-190 5-27 (227)
470 4g1u_C Hemin import ATP-bindin 93.7 0.037 1.3E-06 49.3 3.3 25 167-191 36-60 (266)
471 3gfo_A Cobalt import ATP-bindi 93.7 0.036 1.2E-06 49.6 3.2 24 167-190 33-56 (275)
472 1np6_A Molybdopterin-guanine d 93.7 0.045 1.5E-06 45.5 3.5 22 169-190 7-28 (174)
473 1aky_A Adenylate kinase; ATP:A 93.6 0.042 1.4E-06 47.0 3.5 24 167-190 3-26 (220)
474 3vaa_A Shikimate kinase, SK; s 93.6 0.044 1.5E-06 46.2 3.5 24 167-190 24-47 (199)
475 3lnc_A Guanylate kinase, GMP k 93.6 0.028 9.7E-07 48.6 2.3 24 167-190 26-50 (231)
476 1b0u_A Histidine permease; ABC 93.6 0.043 1.5E-06 48.8 3.5 24 167-190 31-54 (262)
477 2if2_A Dephospho-COA kinase; a 93.6 0.036 1.2E-06 46.7 2.9 22 169-190 2-23 (204)
478 2d2e_A SUFC protein; ABC-ATPas 93.6 0.041 1.4E-06 48.5 3.3 24 167-190 28-51 (250)
479 1tev_A UMP-CMP kinase; ploop, 93.5 0.048 1.6E-06 45.3 3.5 23 168-190 3-25 (196)
480 2v54_A DTMP kinase, thymidylat 93.5 0.047 1.6E-06 45.8 3.5 23 168-190 4-26 (204)
481 2yvu_A Probable adenylyl-sulfa 93.5 0.059 2E-06 44.7 4.0 25 166-190 11-35 (186)
482 1nks_A Adenylate kinase; therm 93.5 0.042 1.4E-06 45.6 3.1 21 170-190 3-23 (194)
483 2qi9_C Vitamin B12 import ATP- 93.5 0.042 1.4E-06 48.4 3.2 24 167-190 25-48 (249)
484 1g6h_A High-affinity branched- 93.5 0.041 1.4E-06 48.7 3.2 24 167-190 32-55 (257)
485 2olj_A Amino acid ABC transpor 93.4 0.047 1.6E-06 48.6 3.5 24 167-190 49-72 (263)
486 2ff7_A Alpha-hemolysin translo 93.4 0.042 1.4E-06 48.3 3.2 25 167-191 34-58 (247)
487 2eyu_A Twitching motility prot 93.4 0.045 1.6E-06 48.6 3.4 24 167-190 24-47 (261)
488 3fb4_A Adenylate kinase; psych 93.4 0.044 1.5E-06 46.6 3.2 22 169-190 1-22 (216)
489 2ghi_A Transport protein; mult 93.4 0.048 1.6E-06 48.4 3.5 25 166-190 44-68 (260)
490 2pze_A Cystic fibrosis transme 93.4 0.045 1.5E-06 47.5 3.2 24 167-190 33-56 (229)
491 2vli_A Antibiotic resistance p 93.4 0.035 1.2E-06 45.8 2.4 24 167-190 4-27 (183)
492 2jeo_A Uridine-cytidine kinase 93.4 0.046 1.6E-06 47.8 3.3 25 166-190 23-47 (245)
493 3b85_A Phosphate starvation-in 93.4 0.035 1.2E-06 47.6 2.4 22 169-190 23-44 (208)
494 3def_A T7I23.11 protein; chlor 93.4 0.16 5.5E-06 44.7 6.9 44 14-57 116-166 (262)
495 2ihy_A ABC transporter, ATP-bi 93.4 0.044 1.5E-06 49.2 3.2 25 167-191 46-70 (279)
496 2zu0_C Probable ATP-dependent 93.3 0.052 1.8E-06 48.3 3.7 24 167-190 45-68 (267)
497 1nn5_A Similar to deoxythymidy 93.3 0.046 1.6E-06 46.3 3.2 24 167-190 8-31 (215)
498 1vpl_A ABC transporter, ATP-bi 93.3 0.05 1.7E-06 48.1 3.5 24 167-190 40-63 (256)
499 3dl0_A Adenylate kinase; phosp 93.3 0.048 1.6E-06 46.4 3.2 22 169-190 1-22 (216)
500 1htw_A HI0065; nucleotide-bind 93.3 0.054 1.8E-06 44.2 3.4 25 167-191 32-56 (158)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=5e-47 Score=348.23 Aligned_cols=272 Identities=25% Similarity=0.454 Sum_probs=221.8
Q ss_pred ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i 80 (352)
|.++++++++.++++|+|++|+|||+|.++.++.+.+++ .++|.++|+||+||++.+..+.|.+++++.+.+ ++++
T Consensus 10 m~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~---~i~i 85 (282)
T 1puj_A 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-KNKPRIMLLNKADKADAAVTQQWKEHFENQGIR---SLSI 85 (282)
T ss_dssp TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCC---EEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCc---EEEE
Confidence 789999999999999999999999999999999998888 689999999999999977778899999766765 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR 160 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
||.++ .|+++|++.+.+.++.... .... +
T Consensus 86 SA~~~--~gi~~L~~~i~~~l~~~~~--------------------------~~~~----~------------------- 114 (282)
T 1puj_A 86 NSVNG--QGLNQIVPASKEILQEKFD--------------------------RMRA----K------------------- 114 (282)
T ss_dssp CTTTC--TTGGGHHHHHHHHHHHHHH--------------------------HHHH----T-------------------
T ss_pred ECCCc--ccHHHHHHHHHHHHHHHHH--------------------------HHHh----c-------------------
Confidence 99999 9999999998877653210 0000 0
Q ss_pred cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351 161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240 (352)
Q Consensus 161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~ 240 (352)
...+.+++++++|.||||||||+|+|.+ ...+.+++.||+|++.+ .+.. +..+.++||||+..+...+.+
T Consensus 115 --~~~~~~~~v~~vG~~nvGKSsliN~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 115 --GVKPRAIRALIIGIPNVGKSTLINRLAK-----KNIAKTGDRPGITTSQQ-WVKV--GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp --TCCCCCEEEEEEESTTSSHHHHHHHHHT-----SCCC------------C-CEEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred --CCCCCCceEEEEecCCCchHHHHHHHhc-----CceeecCCCCCeeeeeE-EEEe--CCCEEEEECcCcCCCCCCCHH
Confidence 0123568999999999999999999997 56688999999999986 3444 347999999999999888878
Q ss_pred HHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCCC
Q psy15351 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD 320 (352)
Q Consensus 241 ~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~d 320 (352)
..+++++++++.+..+++..++.+++..+++..+..+...|+++.+.++..++|+.+|+++|++.++ |.||
T Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~~a~~~g~~~kg---------g~~d 255 (282)
T 1puj_A 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSG---------GLIN 255 (282)
T ss_dssp HHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHHHHHHTCBCST---------TCBC
T ss_pred HHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhChHHHHHHcCCCCCCCCHHHHHHHHHHHhCCcccC---------Cccc
Confidence 8889999999999888988999999988888766667788999766667899999999999999865 6899
Q ss_pred HHHHHHHHHHHHhCCCCcceecCccc
Q psy15351 321 TGEVARIFIEHFRKGSFGSVMLDRDF 346 (352)
Q Consensus 321 ~~~a~~~~l~~~~~g~l~~~~~~~~~ 346 (352)
+.+||+.+|+||++|+||+|++|+|.
T Consensus 256 ~~~aa~~~l~d~~~Gklg~~~l~~~~ 281 (282)
T 1puj_A 256 YDKTTEVIIRDIRTEKFGRLSFEQPT 281 (282)
T ss_dssp HHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceECCCCC
Confidence 99999999999999999999999764
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=1.2e-40 Score=302.68 Aligned_cols=241 Identities=24% Similarity=0.338 Sum_probs=189.2
Q ss_pred ChhHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 1 m~~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i 80 (352)
|.++++++++.++++|+|++|+|||+|.++.++.+. ++ ++|.++|+||+||++++..+.|.+++++.+.+ + ++
T Consensus 8 m~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~---v-~i 80 (262)
T 3cnl_A 8 IEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--RKETIILLNKVDIADEKTTKKWVEFFKKQGKR---V-IT 80 (262)
T ss_dssp -CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC---E-EE
T ss_pred HHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe---E-EE
Confidence 789999999999999999999999999999887776 55 89999999999999987778999999877776 7 99
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccc
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTR 160 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
||.++ .|+++|++.+.+.
T Consensus 81 Sa~~~--~gi~~L~~~l~~~------------------------------------------------------------ 98 (262)
T 3cnl_A 81 THKGE--PRKVLLKKLSFDR------------------------------------------------------------ 98 (262)
T ss_dssp CCTTS--CHHHHHHHHCCCT------------------------------------------------------------
T ss_pred ECCCC--cCHHHHHHHHHHh------------------------------------------------------------
Confidence 99999 9998887654210
Q ss_pred cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC-CCH
Q psy15351 161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI-DNL 239 (352)
Q Consensus 161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~-~~~ 239 (352)
-++++++|.||||||||+|+|.+ .....+++.||+|+..+ .+.. +..+.++||||+..+.. .+.
T Consensus 99 -------~~~v~~vG~~~vGKSslin~l~~-----~~~~~~~~~~g~T~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~ 163 (262)
T 3cnl_A 99 -------LARVLIVGVPNTGKSTIINKLKG-----KRASSVGAQPGITKGIQ-WFSL--ENGVKILDTPGILYKNIFSED 163 (262)
T ss_dssp -------TCEEEEEESTTSSHHHHHHHHHT-----TCC----------CCSC-EEEC--TTSCEEESSCEECCCCCCSHH
T ss_pred -------hhheEEeCCCCCCHHHHHHHHhc-----ccccccCCCCCCccceE-EEEe--CCCEEEEECCCcccCcCCCCh
Confidence 05799999999999999999997 45567899999999875 3333 34689999999999876 544
Q ss_pred HHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhccccccccccCCcccCCC
Q psy15351 240 ECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFP 319 (352)
Q Consensus 240 ~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g~~~~~~~~~~g~~~~~~ 319 (352)
+.+ .+..++++.++.+++..+++..+..+...|+++. .+ .++|+.+|+++|++.++ |.|
T Consensus 164 ~~~---------~~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i~~--~d-~~~l~~ia~~~g~~~kg---------g~~ 222 (262)
T 3cnl_A 164 LAA---------KLLLVGSLPVERIEDQRIFERAFEIFARSIGIES--SF-SEFFEDFARKRGLLKKG---------GVP 222 (262)
T ss_dssp HHH---------HHHHTTSSCGGGCCCHHHHHHHHHHHHHHHTCCC--CH-HHHHHHHHHHTTCBCGG---------GCB
T ss_pred hhc---------ccccCCHHHHHHHHHHHHHHhCHHHHHHHcCcCC--Cc-HHHHHHHHHHhCCccCC---------Ccc
Confidence 432 3455567777888887777655445677899863 34 78999999999998764 589
Q ss_pred CHHHHHHHHHHHHhCCCCcceecCccc
Q psy15351 320 DTGEVARIFIEHFRKGSFGSVMLDRDF 346 (352)
Q Consensus 320 d~~~a~~~~l~~~~~g~l~~~~~~~~~ 346 (352)
|+.+||+.+|++|++|+||+|++|++.
T Consensus 223 d~~~aa~~~l~d~~~g~l~~~~l~~~~ 249 (262)
T 3cnl_A 223 DIERALMLFFTEVAQGKAGRVSFERPE 249 (262)
T ss_dssp CHHHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred cHHHHHHHHHHHHHcCCCCceECCCCc
Confidence 999999999999999999999999764
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.89 E-value=7.4e-23 Score=194.49 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=122.5
Q ss_pred HHHHHHHHh-hccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc----hHHHHHH-HHhhcCCCCcE
Q psy15351 4 GLKDIEKHL-KNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH----ESLIEEK-VRKEQSHISEV 77 (352)
Q Consensus 4 ~~~~~~~~i-~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~----~~~~~~~-~~~~~~~~~~v 77 (352)
.++++.+.+ +.+|++++|+|++++.++..+.+.+++ .++|+++|+||+||++.+. ..+|... +++.|....++
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 344555444 888999999999999888888888887 5899999999999987642 3455443 45556533368
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcc
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDN 157 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
+++||+++ +|+++|++.+.++..
T Consensus 139 ~~iSA~~g--~gi~~L~~~I~~~~~------------------------------------------------------- 161 (369)
T 3ec1_A 139 CLVSAAKG--IGMAKVMEAINRYRE------------------------------------------------------- 161 (369)
T ss_dssp EECBTTTT--BTHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred EEEECCCC--CCHHHHHHHHHhhcc-------------------------------------------------------
Confidence 99999999 999999988765431
Q ss_pred ccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 158 ~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
..+++++|.||||||||+|+|++........+.+++.||||++... +.. +..+.++||||+..+.
T Consensus 162 ----------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~-~~~--~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 162 ----------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE-IPL--ESGATLYDTPGIINHH 226 (369)
T ss_dssp ----------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE-EEC--STTCEEEECCSCCCCS
T ss_pred ----------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE-EEe--CCCeEEEeCCCcCcHH
Confidence 2358999999999999999999731111246788999999998753 333 2358999999998763
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=1.7e-22 Score=191.81 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=115.7
Q ss_pred HHHHHHHHh-hccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCcc----chHHHHHH-HHhhcCCCCcE
Q psy15351 4 GLKDIEKHL-KNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSK----HESLIEEK-VRKEQSHISEV 77 (352)
Q Consensus 4 ~~~~~~~~i-~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~----~~~~~~~~-~~~~~~~~~~v 77 (352)
.++++.+.+ ..+|++++|+|++++..+..+.+.+++ .++|+++|+||+||++.. ...+|... +++.+....++
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 345555544 456699999999998777777777776 589999999999998764 24456443 34456532358
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcc
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDN 157 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
+.+||+++ .|+++|++.+.+..+
T Consensus 137 ~~iSA~~g--~gi~~L~~~l~~~~~------------------------------------------------------- 159 (368)
T 3h2y_A 137 FLISAAKG--QGIAELADAIEYYRG------------------------------------------------------- 159 (368)
T ss_dssp EECCTTTC--TTHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred EEEeCCCC--cCHHHHHhhhhhhcc-------------------------------------------------------
Confidence 99999999 999999988764321
Q ss_pred ccccccccCcceEEEEeCCCCCChHHHHHHHhCCCCCC-CCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 158 ~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
..+++++|.||||||||+|+|.+..... ...+.+++.||||++.+. +.+. ..+.++||||+..+.
T Consensus 160 ----------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~~~--~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 160 ----------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IPLD--EESSLYDTPGIINHH 225 (368)
T ss_dssp ----------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EESS--SSCEEEECCCBCCTT
T ss_pred ----------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EEec--CCeEEEeCCCcCcHH
Confidence 2458999999999999999999742211 235678999999998753 3332 248999999998764
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=3.1e-22 Score=194.58 Aligned_cols=164 Identities=22% Similarity=0.251 Sum_probs=114.5
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
..+++..+++.+|++|+|+|++++.+..+..+.++++ .++|+++|+||+|+.+... ...+++ +.+.. +++.+||
T Consensus 72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~--~~~~iSA 146 (436)
T 2hjg_A 72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFG--EPYPISG 146 (436)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSC--CCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCC--CeEEEeC
Confidence 3456677899999999999999988877777777776 6899999999999975431 111222 33443 5899999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (352)
+++ .|+.+|++++.+.+++.+. .
T Consensus 147 ~~g--~gv~~L~~~i~~~l~~~~~-------------------------------------------------------~ 169 (436)
T 2hjg_A 147 THG--LGLGDLLDAVAEHFKNIPE-------------------------------------------------------T 169 (436)
T ss_dssp TTT--BTHHHHHHHHHHTGGGCCS-------------------------------------------------------S
T ss_pred cCC--CChHHHHHHHHHhcCcccc-------------------------------------------------------c
Confidence 999 9999999998876653210 0
Q ss_pred cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
......++|+++|.||||||||+|+|++ .....+++.||+|++.........+..+.++||||+...
T Consensus 170 ~~~~~~~ki~lvG~~nvGKSSLin~l~~-----~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 170 KYNEEVIQFCLIGRPNVGKSSLVNAMLG-----EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 236 (436)
T ss_dssp CCCTTCEEEEEECSTTSSHHHHHHHHHT-----STTEEEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred cccccCcEEEEEcCCCCCHHHHHHHHhC-----CCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence 0113468999999999999999999997 456678999999999765444445667999999999764
No 6
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=2.4e-21 Score=189.37 Aligned_cols=163 Identities=22% Similarity=0.266 Sum_probs=114.6
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
.+++...++.+|++|+|+|++.++...+..+.++++ .++|+++|+||+|+.... ..+.+++ ..+.. +++.+||+
T Consensus 93 ~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~--~~~~iSA~ 167 (456)
T 4dcu_A 93 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFG--EPYPISGT 167 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSS--SEEECCTT
T ss_pred HHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCC--ceEEeecc
Confidence 445677889999999999999988888888888776 689999999999987543 2222222 33433 57899999
Q ss_pred CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351 84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR 163 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
++ .|+.+|++.+.+.++.... ..
T Consensus 168 ~g--~gv~~L~~~i~~~l~~~~~-------------------------------------------------------~~ 190 (456)
T 4dcu_A 168 HG--LGLGDLLDAVAEHFKNIPE-------------------------------------------------------TK 190 (456)
T ss_dssp TC--TTHHHHHHHHHTTGGGSCS-------------------------------------------------------SC
T ss_pred cc--cchHHHHHHHHhhcccccc-------------------------------------------------------cc
Confidence 99 9999999998765542110 00
Q ss_pred ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.....++|+++|.||||||||+|+|.+ .....+++.||+|++.........+..+.++||||+...
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~-----~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLG-----EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHT-----STTEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred cccccceeEEecCCCCCHHHHHHHHhC-----CCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 123568999999999999999999997 456789999999999765444445668999999999864
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=2.9e-21 Score=187.87 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=118.5
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
.+++..++++||++|+|+|++.+++..+..+.++++ .++|+++|+||+|+........+.+++ +.+.. +++.+||+
T Consensus 72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~--~~~~iSA~ 148 (439)
T 1mky_A 72 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFG--EPIPVSAE 148 (439)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSC--SCEECBTT
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCC--CEEEEecc
Confidence 456778899999999999999988777777777776 589999999999985431111113333 44542 58899999
Q ss_pred CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351 84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR 163 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
++ .|+.+|++.+.+.+++.... . ....
T Consensus 149 ~g--~gv~~L~~~i~~~l~~~~~~----------------------------------------------~-----~~~~ 175 (439)
T 1mky_A 149 HN--INLDTMLETIIKKLEEKGLD----------------------------------------------L-----ESKP 175 (439)
T ss_dssp TT--BSHHHHHHHHHHHHHHTTCC----------------------------------------------S-----SSCC
T ss_pred CC--CCHHHHHHHHHHhccccccc----------------------------------------------c-----hhcc
Confidence 99 99999999998776532100 0 0000
Q ss_pred ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.....++++++|.||||||||+|+|.+ .....+++.||+|++.........+..+.++||||+..
T Consensus 176 ~~~~~~kvaivG~~gvGKSTLln~l~g-----~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 176 EITDAIKVAIVGRPNVGKSTLFNAILN-----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CCCSCEEEEEECSTTSSHHHHHHHHHT-----STTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ccccCceEEEECCCCCCHHHHHHHHhC-----CcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 112468999999999999999999997 45677999999999987654445566789999999854
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=4.3e-20 Score=170.29 Aligned_cols=143 Identities=25% Similarity=0.329 Sum_probs=103.2
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..++++|+|++|+|++.|..+.+ .+.+++. .++|.++|+||+||+++.. .+.|.++|++.|++ ++++|
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~---v~~~s 157 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD---VYLTS 157 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC---EEECC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe---EEEEe
Confidence 36899999999999999988876 6777763 5789999999999998744 57899999887876 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351 82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY 161 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (352)
|.++ .|+++|++..
T Consensus 158 a~~~--~g~~~L~~~~---------------------------------------------------------------- 171 (307)
T 1t9h_A 158 SKDQ--DSLADIIPHF---------------------------------------------------------------- 171 (307)
T ss_dssp HHHH--TTCTTTGGGG----------------------------------------------------------------
T ss_pred cCCC--CCHHHHHhhc----------------------------------------------------------------
Confidence 9998 8877653221
Q ss_pred ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC-------CceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA-------GVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p-------g~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.+-.++++|.+|||||||+|+|.+. ....+|..+ ++|+..+ .+... ..+++||||+...
T Consensus 172 -----~G~~~~lvG~sG~GKSTLln~L~g~-----~~~~~G~I~~~~~~G~~tt~~~~-~~~~~---~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 172 -----QDKTTVFAGQSGVGKSSLLNAISPE-----LGLRTNEISEHLGRGKHTTRHVE-LIHTS---GGLVADTPGFSSL 237 (307)
T ss_dssp -----TTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCC-EEEET---TEEEESSCSCSSC
T ss_pred -----CCCEEEEECCCCCCHHHHHHHhccc-----ccccccceeeecCCCcccccHHH-HhhcC---CEEEecCCCcccc
Confidence 1236899999999999999999873 333344433 4666543 33332 3689999999876
Q ss_pred CC
Q psy15351 235 RI 236 (352)
Q Consensus 235 ~~ 236 (352)
.+
T Consensus 238 ~l 239 (307)
T 1t9h_A 238 EF 239 (307)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.74 E-value=1.7e-17 Score=155.83 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=100.0
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iS 81 (352)
+..++++|+|++| |++.|..+.+ .+.+++. .++|.++|+||+||++++. ...|.++|.+.|++ ++++|
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~---v~~~S 199 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR---VLMVS 199 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC---EEECB
T ss_pred HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc---EEEEe
Confidence 3457999999965 7888876654 5666653 5788899999999998764 56788888888887 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccc
Q psy15351 82 CRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRY 161 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (352)
|.++ .|+++|...+
T Consensus 200 a~~~--~gl~~L~~~~---------------------------------------------------------------- 213 (358)
T 2rcn_A 200 SHTQ--DGLKPLEEAL---------------------------------------------------------------- 213 (358)
T ss_dssp TTTT--BTHHHHHHHH----------------------------------------------------------------
T ss_pred cCCC--cCHHHHHHhc----------------------------------------------------------------
Confidence 9999 9988876432
Q ss_pred ccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCc-eecCCCC---C----ceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 162 HRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKA-VPVGPKA---G----VTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 162 ~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~-~~~~~~p---g----~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+-.++++|.+|||||||+|.|.+.. . ..+|... | +|+... ...+.. ...++||||+..
T Consensus 214 -----~G~~~~lvG~sG~GKSTLln~L~g~~-----~~~~~G~I~~~~G~g~~tt~~~~-i~~v~q--~~~l~dtpgv~e 280 (358)
T 2rcn_A 214 -----TGRISIFAGQSGVGKSSLLNALLGLQ-----NEILTNDVSNVSGLGQHTTTAAR-LYHFPH--GGDVIDSPGVRE 280 (358)
T ss_dssp -----TTSEEEEECCTTSSHHHHHHHHHCCS-----SCCCCC-------------CCCE-EEECTT--SCEEEECHHHHT
T ss_pred -----CCCEEEEECCCCccHHHHHHHHhccc-----cccccCCccccCCCCccceEEEE-EEEECC--CCEecCcccHHH
Confidence 11258899999999999999999732 2 2333222 2 344332 222322 357899999976
Q ss_pred C
Q psy15351 234 P 234 (352)
Q Consensus 234 ~ 234 (352)
.
T Consensus 281 ~ 281 (358)
T 2rcn_A 281 F 281 (358)
T ss_dssp C
T ss_pred h
Confidence 4
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.72 E-value=5.4e-17 Score=150.00 Aligned_cols=145 Identities=26% Similarity=0.312 Sum_probs=98.7
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHH---h-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
.++++|++++|+|+++|..+.+ .+.+++ . .+.|.++|+||+||.++.. ..+|.+++++.++. ++.+||+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~---~~~~SA~ 151 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD---VLKVSAK 151 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE---EEECCTT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe---EEEEECC
Confidence 5789999999999998864433 334443 2 6789999999999987652 56777777766765 9999999
Q ss_pred CCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhcccccccc
Q psy15351 84 NPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR 163 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
++ .|+++|++.+.
T Consensus 152 ~g--~gi~~L~~~l~----------------------------------------------------------------- 164 (302)
T 2yv5_A 152 TG--EGIDELVDYLE----------------------------------------------------------------- 164 (302)
T ss_dssp TC--TTHHHHHHHTT-----------------------------------------------------------------
T ss_pred CC--CCHHHHHhhcc-----------------------------------------------------------------
Confidence 99 99999876531
Q ss_pred ccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceec--CCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 164 TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV--GPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 164 ~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~--~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
+..++++|.+|+|||||+|+|. ........... +.-..+|+... ..... ...+++||||+...
T Consensus 165 ----G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~--~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 165 ----GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFG--KGSFVGDTPGFSKV 229 (302)
T ss_dssp ----TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEET--TTEEEESSCCCSSC
T ss_pred ----CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcC--CCcEEEECcCcCcC
Confidence 2347899999999999999998 42111111111 11222555432 23322 24689999999754
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=4.1e-16 Score=144.03 Aligned_cols=143 Identities=27% Similarity=0.374 Sum_probs=96.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHH---h-CCCCEEEEEEcccCCCccc---hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV---Q-NIRPMVLVLNKRDLINSKH---ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
..+.++|++|+|+|+++|.++. ..+..++ + .+.|+++|+||+||.+... ..+|.+.+... . +++.+||
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~---~~~~~SA 154 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-Y---PIVKTSA 154 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-S---CEEECCT
T ss_pred cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-C---cEEEEEC
Confidence 3578999999999999886443 2333443 2 5789999999999987643 23455444322 4 4999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (352)
+++ .|+++++..+.
T Consensus 155 ktg--~gv~~lf~~l~---------------------------------------------------------------- 168 (301)
T 1u0l_A 155 KTG--MGIEELKEYLK---------------------------------------------------------------- 168 (301)
T ss_dssp TTC--TTHHHHHHHHS----------------------------------------------------------------
T ss_pred CCC--cCHHHHHHHhc----------------------------------------------------------------
Confidence 999 99999876542
Q ss_pred cccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC-------CceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 163 RTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA-------GVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 163 ~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p-------g~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
+-.++++|.+|+|||||+|+|.+. ....+|... .+|+... ..... ...+++||||+....
T Consensus 169 -----geiv~l~G~sG~GKSTll~~l~g~-----~~~~~G~i~~~~~~g~~~t~~~~-~~~~~--~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 169 -----GKISTMAGLSGVGKSSLLNAINPG-----LKLRVSEVSEKLQRGRHTTTTAQ-LLKFD--FGGYVVDTPGFANLE 235 (301)
T ss_dssp -----SSEEEEECSTTSSHHHHHHHHSTT-----CCCC-------------CCCSCC-EEECT--TSCEEESSCSSTTCC
T ss_pred -----CCeEEEECCCCCcHHHHHHHhccc-----ccccccceecccCCCCCceeeeE-EEEcC--CCCEEEECcCCCccC
Confidence 124789999999999999999873 223333322 2454432 22222 236899999998765
Q ss_pred C
Q psy15351 236 I 236 (352)
Q Consensus 236 ~ 236 (352)
+
T Consensus 236 ~ 236 (301)
T 1u0l_A 236 I 236 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=1e-15 Score=144.84 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=102.2
Q ss_pred CEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecCCCCCCCH
Q psy15351 16 DIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCRNPNCKGV 90 (352)
Q Consensus 16 D~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~~~~~~gi 90 (352)
|.+-.++|++.++.+.++.+.+++. ..+|.++++||+|++++...+.|.++++.. +.. ...+++..+ .+.
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~ 133 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSND---PNEIAELRR--QFY 133 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHH--HHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---HHHHHHHHH--HHH
Confidence 3444567777777788888877663 567788999999999988888899988652 322 222232222 233
Q ss_pred HHHHHHHHHHhhhccccccccccceeEEEeccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceE
Q psy15351 91 QKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170 (352)
Q Consensus 91 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
..+.+.+.+....- ..+...+ +...+........++
T Consensus 134 ~~l~~~~~~~~~~l------------------------~~l~~~~--------------------~~~~~~~~~~~~~~~ 169 (357)
T 2e87_A 134 GRVASVLRDIDDRL------------------------RYLNKAR--------------------EVLKDLPVVDLEIPT 169 (357)
T ss_dssp HHHHHHHHHTHHHH------------------------HHHHHHH--------------------HHGGGSCCCCSSSCE
T ss_pred HHHHHHHHHHHHHH------------------------HHHHHHH--------------------HHHhcCCccCCCCCE
Confidence 33322222111100 0000000 000111111245689
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236 (352)
Q Consensus 171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~ 236 (352)
|+++|.||||||||+|+|.+ ....+++.|++|++.........+..+.++||||+.....
T Consensus 170 v~lvG~~gvGKSTLin~L~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 170 VVIAGHPNVGKSTLLKALTT------AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp EEEECSTTSSHHHHHHHHCS------SCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred EEEECCCCCCHHHHHHHHhC------CCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 99999999999999999996 2356778899998876443333445689999999987543
No 13
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-13 Score=130.74 Aligned_cols=62 Identities=27% Similarity=0.279 Sum_probs=54.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
...+|+++|+||||||||+|+|++ ..+.+++.||||+++..++....+.++.|+||||+...
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~------~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTG------TESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHS------BCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC------CCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 457899999999999999999996 34778999999999987777777788999999999875
No 14
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.31 E-value=7.8e-12 Score=115.65 Aligned_cols=66 Identities=42% Similarity=0.573 Sum_probs=55.8
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCCCC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISLPR 235 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~~~ 235 (352)
.++.-.|+++|.||||||||+|+|.+ .+.+.+++.|++|++....+.... +.++.|+||||+..+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g-----~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG-----TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT-----SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC-----CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 35668899999999999999999998 566678999999998876665555 6689999999998764
No 15
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.20 E-value=1.7e-11 Score=113.01 Aligned_cols=63 Identities=35% Similarity=0.596 Sum_probs=52.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
..+|+++|.||||||||+|+|++ .+.+.+++.|+||++....+....+.++.|+||||+..+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g-----~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG-----VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT-----SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-----CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 35699999999999999999997 4566788999999987665555556689999999998763
No 16
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1e-11 Score=116.71 Aligned_cols=91 Identities=22% Similarity=0.208 Sum_probs=55.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDTPG 230 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~DtPG 230 (352)
.++|+++|.||||||||+|+|++ . .+.+++.|++|.++..+.....+ ..+.++||||
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~-----~-~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK-----A-GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAG 75 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH-----T-C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-----C-CCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCC
Confidence 46899999999999999999996 2 36788999999987654333332 3589999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN 274 (352)
Q Consensus 231 i~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~ 274 (352)
+.... +...++.......++ -+|.++++++..+.
T Consensus 76 l~~~a--~~~~gl~~~fl~~ir--------~ad~il~VvD~~~~ 109 (363)
T 1jal_A 76 LVAGA--SKGEGLGNKFLANIR--------ETDAIGHVVRCFEN 109 (363)
T ss_dssp CCTTH--HHHGGGTCCHHHHHH--------TCSEEEEEEECSCC
T ss_pred Ccccc--cccchHHHHHHHHHH--------hcCeEEEEEecCCC
Confidence 98641 111111101111122 26778888887654
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=1.7e-11 Score=118.95 Aligned_cols=61 Identities=34% Similarity=0.412 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.+|+++|.||||||||+|+|++ .+.+.+++.||+|++.........+..+.++||||+...
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~-----~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~ 62 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVK-----KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----CCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccc
Confidence 3699999999999999999997 455678999999999876554455668999999999753
No 18
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=116.53 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=50.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT 228 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt 228 (352)
..+.+|+++|.||||||||+|+|++ .. ..+++.|++|.++........+ ..+.++||
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg-----~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTN-----SQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-----CC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 4568999999999999999999996 22 4788999999887654332222 24899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHH
Q psy15351 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIV 291 (352)
Q Consensus 229 PGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~ 291 (352)
||+..... ...++...+...+.+ +|.++++++..+..++....+...|..+++
T Consensus 94 pGl~~~as--~~~glg~~~l~~ir~--------aD~Il~VvD~~~~~~i~~v~~~~dP~~di~ 146 (396)
T 2ohf_A 94 AGLVKGAH--NGQGLGNAFLSHISA--------CDGIFHLTRAFEDDDITHVEGSVDPIRDIE 146 (396)
T ss_dssp CC-------------CCHHHHHHHT--------SSSEEEEEEC------------CTTHHHHH
T ss_pred CCcccccc--hhhHHHHHHHHHHHh--------cCeEEEEEecCCCcchhhhcCCCChHHHHH
Confidence 99987532 122221122223333 777888888776544444334345554443
No 19
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.05 E-value=4e-10 Score=103.78 Aligned_cols=60 Identities=32% Similarity=0.425 Sum_probs=49.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
...|+++|.||||||||+|+|++ .+.+.+++.|++|++....+....+.++.++||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g-----~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG-----QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT-----CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-----CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 45799999999999999999997 4566788999999876555554555679999999986
No 20
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.04 E-value=2.1e-10 Score=111.97 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=32.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
..+++|+++|.||||||||+|+|.+ ...+.+++.||||++.........+..+.++||||+..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~-----~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~ 294 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLG-----QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREA 294 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-----------------------CEEEEETTEEEEEEC-------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcc
Confidence 3578999999999999999999997 455678999999999865444445667999999999764
No 21
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.03 E-value=2.4e-10 Score=102.25 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=44.8
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCC-CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGP-KAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~-~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
...++|+++|.||||||||+|+|++ ......+. ..|+|+..+.......+..+.++||||+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~-----~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG-----QRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT-----SCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC-----CCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4679999999999999999999997 33333333 3357877765555556678999999999865
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.02 E-value=9.4e-11 Score=113.58 Aligned_cols=61 Identities=33% Similarity=0.416 Sum_probs=34.8
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.+|+++|.||||||||+|+|++ ...+.+++.||+|++.........+..+.++||||+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~-----~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~ 64 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG-----ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 64 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE-----EECC-----------CEEEECTTCSSCCEEEC-------
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCc
Confidence 5799999999999999999997 455678999999999765444445668999999999743
No 23
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.00 E-value=7.5e-10 Score=99.54 Aligned_cols=62 Identities=32% Similarity=0.424 Sum_probs=50.9
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~ 236 (352)
.+|+++|.||||||||+|+|++ ....+++.||+|.+.........+..+.++||||+.....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHC------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 4799999999999999999996 3467899999998876655554566899999999987643
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.99 E-value=5.4e-10 Score=101.50 Aligned_cols=62 Identities=27% Similarity=0.357 Sum_probs=51.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
.++|+++|.||||||||+|+|++ ....+++.||+|.+.........+..+.++||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 47899999999999999999996 336889999999887655544456689999999998754
No 25
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.98 E-value=1.4e-09 Score=97.89 Aligned_cols=69 Identities=29% Similarity=0.318 Sum_probs=53.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~ 241 (352)
+.++|+++|.||||||||+|+|++ ....+++.||+|.+.........+..+.++||||.........++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e 72 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDE 72 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHH
Confidence 458899999999999999999996 335688899999887654444445579999999998764434333
No 26
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.96 E-value=6.3e-10 Score=99.95 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=49.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC-ceeEeeeeEEecCCCcEEEEeCCCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-VTRSVMSQVKISEKPLIYILDTPGISLPRID 237 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg-~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~ 237 (352)
...++|+++|.||||||||+|+|.+ .....++..|+ +|+..........+..+.++||||+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~-----~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~ 87 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR-----KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH 87 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT-----SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC
Confidence 4568999999999999999999997 33344444555 7777654444455668999999999876443
No 27
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.96 E-value=7.8e-10 Score=92.97 Aligned_cols=63 Identities=35% Similarity=0.457 Sum_probs=48.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
++.+|+++|.||||||||+|+|.+ .....+++.||+|++.........+..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG-----REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-----CCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 457899999999999999999997 334457788999987654333334556899999999754
No 28
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=2.2e-10 Score=108.82 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=51.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-----------------CcEEEEeC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-----------------PLIYILDT 228 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-----------------~~~~l~Dt 228 (352)
.++.+++++|.||||||||+|+|++ ...+.+++.|+||+++..+.....+ ..+.++||
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK-----SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH-----STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-----CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999997 4445889999999988765433332 24799999
Q ss_pred CCCCCC
Q psy15351 229 PGISLP 234 (352)
Q Consensus 229 PGi~~~ 234 (352)
||+...
T Consensus 93 pGl~~~ 98 (392)
T 1ni3_A 93 AGLTKG 98 (392)
T ss_dssp GGGCCC
T ss_pred cccccC
Confidence 999865
No 29
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=1.3e-10 Score=111.07 Aligned_cols=60 Identities=25% Similarity=0.252 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe---------------------cCC---CcEE
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI---------------------SEK---PLIY 224 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~---------------------~~~---~~~~ 224 (352)
++|+++|.||||||||+|+|++ .. +.+++.||||+++..++.. ..+ .++.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~-----~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~ 74 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL-----VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVK 74 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHC-----CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEE
Confidence 4799999999999999999997 33 7789999999987654311 011 2589
Q ss_pred EEeCCCCCCC
Q psy15351 225 ILDTPGISLP 234 (352)
Q Consensus 225 l~DtPGi~~~ 234 (352)
|+||||+...
T Consensus 75 lvDtpG~~~~ 84 (397)
T 1wxq_A 75 MVDVAGLVPG 84 (397)
T ss_dssp EEECC-----
T ss_pred EEECCCcccc
Confidence 9999999754
No 30
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=96.10 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=44.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC--CceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCH
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA--GVTRSVMSQVKISEKPLIYILDTPGISLPRIDNL 239 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p--g~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~ 239 (352)
...++|+++|.+|||||||+|+|++. . ...+..| ++|+..........+..+.++||||+........
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~-----~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 96 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR-----K-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA 96 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS-----C-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC-----C-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence 45689999999999999999999973 2 2334444 6777766544445566899999999998754443
No 31
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.94 E-value=8.9e-10 Score=96.19 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=51.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-cCCCcEEEEeCCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-SEKPLIYILDTPGISLPRI 236 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~~l~DtPGi~~~~~ 236 (352)
...++|+++|.+|||||||+|+|++. ...+.++..||+|+........ ..+..+.++||||+.....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 94 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ----KRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV 94 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC----SSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC----CcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccC
Confidence 35689999999999999999999972 1246788999999886532222 3345799999999887643
No 32
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.93 E-value=2.3e-09 Score=97.22 Aligned_cols=67 Identities=30% Similarity=0.333 Sum_probs=51.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHHH
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~ 241 (352)
.++|+++|.||||||||+|+|++ ....+++.||+|.+........ +..+.++||||.........++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g------~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e 69 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG------HNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEA 69 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC------CCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHH
Confidence 47899999999999999999996 2356889999998765433322 5579999999998754333333
No 33
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.93 E-value=1.1e-09 Score=96.36 Aligned_cols=68 Identities=26% Similarity=0.311 Sum_probs=46.2
Q ss_pred cccccCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 161 YHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 161 ~~~~~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
++......++|+++|.+|||||||+|+|.+ .. ..+++.+++|+..........+..+.++||||....
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~-----~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSR-----AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTT-----TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhC-----CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 333335679999999999999999999996 22 346778898887654333334457899999999754
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.92 E-value=1.3e-10 Score=113.49 Aligned_cols=63 Identities=33% Similarity=0.473 Sum_probs=52.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC-CC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS-LP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~-~~ 234 (352)
.+++|+++|.||||||||+|+|.+ ...+.+++.||||++........++..+.++||||+. ..
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~-----~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLN-----EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHH-----HTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHC-----CCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccc
Confidence 458999999999999999999997 4456789999999998754444456679999999998 54
No 35
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.89 E-value=4.2e-09 Score=95.30 Aligned_cols=67 Identities=33% Similarity=0.422 Sum_probs=53.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCCCCHH
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~~~~~ 240 (352)
.++|+++|.||||||||+|+|++ ....+++.||+|.+.........+..+.++||||+........+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 69 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID 69 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH
Confidence 47899999999999999999996 34488899999988765544445567999999999876443433
No 36
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.88 E-value=4.4e-10 Score=106.09 Aligned_cols=90 Identities=23% Similarity=0.211 Sum_probs=58.3
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC---------------------CCcEEEEe
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE---------------------KPLIYILD 227 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~---------------------~~~~~l~D 227 (352)
++|+++|.||||||||+|+|++ ..+.+++.|++|..+..++.... +..+.++|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~------~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTR------ANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHH------HHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhC------CCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 5699999999999999999996 23567888998887654332211 23589999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCCCC
Q psy15351 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGN 274 (352)
Q Consensus 228 tPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~~~ 274 (352)
|||+....... ..+.......++. +|.++++++..+.
T Consensus 76 tpGl~~~a~~~--~~lg~~fl~~ir~--------ad~ii~VvD~~~~ 112 (368)
T 2dby_A 76 IAGLVKGAHKG--EGLGNQFLAHIRE--------VAAIAHVLRCFPD 112 (368)
T ss_dssp CCSCCCCCCSS--SCTTHHHHHHHHT--------CSEEEEEEECCCC
T ss_pred CCCcccccccc--chHHHHHHHHHHh--------CCEEEEEEECCCC
Confidence 99998653211 1111111122222 6777777877653
No 37
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.88 E-value=1.4e-09 Score=98.41 Aligned_cols=65 Identities=26% Similarity=0.359 Sum_probs=51.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
...++|+++|.+|||||||+|+|++ .....+++.+++|...........+..+.++||||+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG-----ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT-----SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC-----CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 4578999999999999999999997 4445678888988776543333445579999999997653
No 38
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.88 E-value=1.6e-09 Score=97.62 Aligned_cols=65 Identities=31% Similarity=0.361 Sum_probs=51.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
...++|+++|.+|||||||+|+|++ ...+.+++.+++|...........+..+.++||||+....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG-----EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT-----SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC-----CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 4579999999999999999999997 4555678889988876654444456689999999997653
No 39
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.87 E-value=9.1e-09 Score=94.95 Aligned_cols=98 Identities=15% Similarity=0.293 Sum_probs=76.2
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHH-HHHHh-CCCCEEEEEEcccCC-CccchHHHHHHHHhhcCCCCcEEEeec
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLL-QQSVQ-NIRPMVLVLNKRDLI-NSKHESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l-~~~l~-~~k~~ilVlNK~Dl~-~~~~~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
+.+...+..+|++++|+|+.++.+..+..+ .+.++ .+.|+++|+||+|+. +......+.+.+.+....+.+++.+||
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA 163 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 456778899999999999998776655554 45554 578999999999998 666566666666554322336999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~~ 105 (352)
+++ .|+++|++.+.+.+++.+
T Consensus 164 ~~g--~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 164 LKG--ANLDELVKTILKYLPEGE 184 (308)
T ss_dssp TTT--BSHHHHHHHHHHHSCBCC
T ss_pred CCC--CCHHHHHHHHHHhCccCC
Confidence 999 999999999999887654
No 40
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.86 E-value=6.8e-09 Score=86.36 Aligned_cols=61 Identities=31% Similarity=0.397 Sum_probs=42.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.++|+++|.+|||||||+|+|.+. ...++..||+|.+.........+..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE------NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------SSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC------CeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 368999999999999999999962 2345678888877554333334557899999998764
No 41
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.85 E-value=1.9e-09 Score=107.32 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=43.8
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-------cCCCcEEEEeCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-------SEKPLIYILDTPGISLPR 235 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-------~~~~~~~l~DtPGi~~~~ 235 (352)
.+..+|+|+|.||||||||+|+|++. ... + +.+|+|++...++.. ..+..+.|+||||+..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~-----~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC-----SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC-----CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 45688999999999999999999973 211 1 445544443332221 245579999999999764
No 42
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.82 E-value=6.3e-09 Score=88.32 Aligned_cols=63 Identities=35% Similarity=0.477 Sum_probs=49.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~ 236 (352)
...++|+++|.+|||||||+|+|.+ .....+++.+|+|+.... ... +.++.++||||+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~-----~~~~~~~~~~~~t~~~~~-~~~--~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN-----RKIAFVSKTPGKTRSINF-YLV--NSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT-----SCCSCCCSSCCCCCCEEE-EEE--TTTEEEEECCCBSSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc-----CccccccCCCCCccCeEE-EEE--CCcEEEEECCCCccccC
Confidence 4568999999999999999999997 345677889999987643 222 34699999999876543
No 43
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.82 E-value=4.6e-08 Score=82.60 Aligned_cols=57 Identities=35% Similarity=0.578 Sum_probs=44.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~ 235 (352)
++|+++|.+|||||||+|++.+ .....+..||+|..... +... .+.++||||+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~t~~~~~-~~~~---~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIE-IEWK---NHKIIDMPGFGFMM 58 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEE-EEET---TEEEEECCCBSCCT
T ss_pred cEEEEECCCCCCHHHHHHHHhC------cCCccCCCCCccceeEE-EecC---CEEEEECCCccccc
Confidence 5799999999999999999996 23556778888877643 3322 69999999987653
No 44
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.80 E-value=2e-08 Score=87.49 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=67.3
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHH----HHHHhh---c-CCCCcEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIE----EKVRKE---Q-SHISEVI 78 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~---~-~~~~~v~ 78 (352)
.......+|++++|+|+++++...+..+.+++. .+.|+++|+||+|+.+........ +.+... + ....+++
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ 188 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 333445589999999999877665566666665 578999999999998865433332 333321 0 1122589
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
.+||+++ .|+++++++|.+.++..
T Consensus 189 ~~SA~~g--~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 189 LFSALKR--TGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEBTTTT--BSHHHHHHHHHHHHC--
T ss_pred EeecCCC--cCHHHHHHHHHHhcCcc
Confidence 9999999 99999999999887653
No 45
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.80 E-value=4.5e-09 Score=99.20 Aligned_cols=59 Identities=27% Similarity=0.257 Sum_probs=38.6
Q ss_pred EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
.|+++|+||||||||+|+|++ ....+++.|++|+++........+..+.++||||+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~------~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG------LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC------C-----------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred EEEEECCCCCCHHHHHHHHHC------CCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 499999999999999999996 23467888999988765433344567899999998653
No 46
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.79 E-value=3.7e-08 Score=83.46 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=65.6
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--cCCCCcEEEeecCCC
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QSHISEVIFTNCRNP 85 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~~~~v~~iSa~~~ 85 (352)
......+|++++|+|++.+.......+..++. .+.|+++|+||+|+.++.......+.+++. .....+++.+||+++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG 178 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 33445569999999998776655555555555 679999999999998766544333333221 111124999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy15351 86 NCKGVQKILPTLQHISD 102 (352)
Q Consensus 86 ~~~gi~~L~~~i~~~~~ 102 (352)
.|++++++++.+.++
T Consensus 179 --~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 179 --EGISELLDLISTLLK 193 (195)
T ss_dssp --TTHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHhh
Confidence 999999999987765
No 47
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.79 E-value=3.6e-09 Score=98.93 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=47.1
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
.+|+++|.||||||||+|+|++ ....+++.|++|..+...+.... ...+.++||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSS------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHc------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 4799999999999999999985 34567899999988765443333 36799999999864
No 48
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.79 E-value=2e-08 Score=84.87 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=48.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
+.++|+++|.+|||||||+|+|.+ ....++..|++|.+.........+..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 457999999999999999999996 33566778998887654433344567899999998765
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=2.2e-08 Score=85.03 Aligned_cols=107 Identities=22% Similarity=0.038 Sum_probs=65.5
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++|+|+|+.++.+... ..+..+.. ...|+++|+||+|+.+... ..+..++.++.+.. ++.+
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML---FIEA 157 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE---EEEe
Confidence 3456789999999999987643222 11122222 3578999999999965432 33444555555554 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEeccCCCCchh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~nvgkss 129 (352)
||+++ .|+++++++|.+.+...+... ..+..|+||||
T Consensus 158 Sa~~~--~gi~~l~~~l~~~~~~~~~~~----------~~~~~n~gkSs 194 (195)
T 1x3s_A 158 SAKTC--DGVQCAFEELVEKIIQTPGLW----------ESENQNSGPSS 194 (195)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHTSGGGT----------CC---------
T ss_pred cCCCC--CCHHHHHHHHHHHHHhhhhhh----------cccccCCCCCC
Confidence 99999 999999999988776443111 12345888875
No 50
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.77 E-value=1.5e-08 Score=86.22 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=40.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRI 236 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~~~ 236 (352)
...++|+++|.+|||||||+|+|.+. .....+++.+|+|+.... ... +..+.++||||+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~t~~~~~-~~~--~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR----KNLARTSSKPGKTQTLNF-YII--NDELHFVDVPGYGFAKV 84 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEE-EEE--TTTEEEEECCCBCCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC----CCccccCCCCCceeeEEE-EEE--CCcEEEEECCCCCcccc
Confidence 35689999999999999999999972 224567889999987643 323 33799999999877643
No 51
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.74 E-value=1.7e-09 Score=105.10 Aligned_cols=64 Identities=34% Similarity=0.428 Sum_probs=46.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
..+++|+++|.||||||||+|+|.+ ...+.+++.||+|++........++..+.++||||+...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~-----~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQ-----SDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHH-----HHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhC-----CCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc
Confidence 3578999999999999999999997 445668889999998765333345567999999999754
No 52
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.74 E-value=8.6e-09 Score=84.65 Aligned_cols=61 Identities=34% Similarity=0.490 Sum_probs=39.2
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
++|+++|.+|||||||+|++.+ .....++..|++|.+.........+..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK-----KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-----CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 5799999999999999999997 334456778888887654433344557999999998764
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.72 E-value=3.4e-08 Score=96.07 Aligned_cols=96 Identities=18% Similarity=0.315 Sum_probs=72.5
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhc--CCCCcEEEeec
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQ--SHISEVIFTNC 82 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~--~~~~~v~~iSa 82 (352)
+...+..+|++|+|+|++.++...+..+..++. .++|+++|+||+|+.+... .++..+.+++.. ....+++++||
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 350 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 350 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence 446789999999999999987766666666555 6899999999999986543 344445544431 11225999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~~ 105 (352)
+++ .|++++++.+.+.+....
T Consensus 351 ~~g--~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 351 LTK--KRIHTLMPAIIKASENHS 371 (456)
T ss_dssp TTC--TTGGGHHHHHHHHHHHHT
T ss_pred CCC--cCHHHHHHHHHHHHHHhc
Confidence 999 999999999988776543
No 54
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.72 E-value=1.1e-08 Score=94.37 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=24.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA 205 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~p 205 (352)
..++|+++|.||||||||+|+|++..........++..|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p 61 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------C
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeee
Confidence 457899999999999999999998533222223445556
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.71 E-value=7.2e-08 Score=81.90 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=63.6
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHh-hcC-CCCcEEEeecCCCCCCC
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRK-EQS-HISEVIFTNCRNPNCKG 89 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~-~~~~v~~iSa~~~~~~g 89 (352)
..+|++++|+|++++.+..+..+.+++. .+.|+++|+||+|+.+........+.+.+ ... ...+++.+||+++ .|
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~g 181 (195)
T 1svi_A 104 EELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK--KG 181 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC--TT
T ss_pred hcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCC--CC
Confidence 4449999999999877665555556655 67899999999999887654433333332 111 1125899999999 99
Q ss_pred HHHHHHHHHHHhh
Q psy15351 90 VQKILPTLQHISD 102 (352)
Q Consensus 90 i~~L~~~i~~~~~ 102 (352)
+++++++|.+.++
T Consensus 182 v~~l~~~l~~~l~ 194 (195)
T 1svi_A 182 KDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877653
No 56
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.70 E-value=1.6e-08 Score=91.56 Aligned_cols=68 Identities=28% Similarity=0.325 Sum_probs=38.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecC--CCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVG--PKAGVTRSVMSQVKISEKP--LIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~--~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~ 234 (352)
..++|+++|.+|+|||||+|+|++...........+ ..|+++...........+. .+.++||||+.+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 468999999999999999999987422111100000 1333333332222212222 6899999999754
No 57
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.69 E-value=2.8e-08 Score=91.40 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-C--CCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEe
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-N--IRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~--~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~i 80 (352)
...++..+..+|++++|+|+.++++..+..+.+.++ . +.|+++|+||+|+.+... ..++.+.+ ..+.+++++
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~i 152 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL----LPEAEPRML 152 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT----STTSEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh----cCcCcEEEE
Confidence 445678899999999999999887655555555554 3 789999999999987643 33333322 233468999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~~ 105 (352)
||+++ .|+++|++.+.+.+++.+
T Consensus 153 SA~~g--~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 153 SALDE--RQVAELKADLLALMPEGP 175 (301)
T ss_dssp CTTCH--HHHHHHHHHHHTTCCBCC
T ss_pred eCCCC--CCHHHHHHHHHHhcccCC
Confidence 99999 999999999988776543
No 58
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.69 E-value=2.5e-08 Score=81.79 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=66.1
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN 84 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~ 84 (352)
+.....+..+|++++|+|++++.......+.++++ .+.|+++|+||+|+.+... ...++. +.+.. +++.+||++
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~--~~~~~Sa~~ 145 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFG--DPIPTSSEH 145 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSC--SCEECBTTT
T ss_pred HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCC--CeEEEeccc
Confidence 34556789999999999999876655555656554 5789999999999976532 111222 34442 489999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q psy15351 85 PNCKGVQKILPTLQHIS 101 (352)
Q Consensus 85 ~~~~gi~~L~~~i~~~~ 101 (352)
+ .|++++++++.+.+
T Consensus 146 ~--~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 A--RGLEELLEAIWERL 160 (161)
T ss_dssp T--BSHHHHHHHHHHHC
T ss_pred C--CChHHHHHHHHHhC
Confidence 9 99999999987654
No 59
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.67 E-value=6.7e-08 Score=94.39 Aligned_cols=92 Identities=17% Similarity=0.358 Sum_probs=69.2
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
+++.++..++.+|++|+|+|+.++.+..+..+.+.+ .++|+++|+||+|+.+....+++.+++ ..+. +++.+||+
T Consensus 313 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~---~~i~iSAk 387 (482)
T 1xzp_A 313 GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVEKINEEEIKNKL-GTDR---HMVKISAL 387 (482)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTSSEEEEEEECSSCCCCCHHHHHHHH-TCST---TEEEEEGG
T ss_pred HHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-cCCCEEEEEECcccccccCHHHHHHHh-cCCC---cEEEEECC
Confidence 456788899999999999999887665444555555 588999999999997653333333332 2223 48999999
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy15351 84 NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~ 102 (352)
++ .|+++|+++|.+.+.
T Consensus 388 tg--~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KG--EGLEKLEESIYRETQ 404 (482)
T ss_dssp GT--CCHHHHHHHHHHHTH
T ss_pred CC--CCHHHHHHHHHHHHh
Confidence 99 999999999987654
No 60
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.64 E-value=1.2e-07 Score=90.82 Aligned_cols=99 Identities=10% Similarity=0.133 Sum_probs=70.4
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhh----cCCCC
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKE----QSHIS 75 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~~~~ 75 (352)
+..+.+...+..+|++|+|+|++++. .....+....+. ..+|+++|+||+|+++.+......+.+++. +....
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 166 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence 45677888899999999999999875 222222223332 457999999999999876444443333322 22222
Q ss_pred cEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 76 EVIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++++||+++ .|+++|+++|.+.++.
T Consensus 167 ~ii~vSA~~g--~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 167 PIIPVSALHK--INIDSLIEGIEEYIKT 192 (403)
T ss_dssp CEEECBTTTT--BSHHHHHHHHHHHSCC
T ss_pred EEEEEECCCC--cChHHHHHHHHHhCCC
Confidence 5999999999 9999999999987654
No 61
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.64 E-value=3.1e-08 Score=82.42 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=38.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|+|.+ .....+.+.+|+|.... .+...+. -.+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG-----KQERDLHEQLGEDVYER-TLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC-----C-----CCCSSSSEEEE-EEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhc-----CCCccccCccccceeEE-EEEECCEEEEEEEEecCCCCc
Confidence 458999999999999999999997 34445566788776432 2333221 2578999999864
No 62
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.60 E-value=4.1e-08 Score=81.20 Aligned_cols=62 Identities=24% Similarity=0.300 Sum_probs=43.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|+|.+.. ......+.+|++..... +.... ...+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS----FDPNINPTIGASFMTKT-VQYQNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC----CCTTCCCCCSEEEEEEE-EEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC----CCCCCCCceeEEEEEEE-EEECCeEEEEEEEcCCCchh
Confidence 45899999999999999999999732 12345566777665432 22222 23688999999743
No 63
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.59 E-value=6.3e-08 Score=88.40 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=28.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg 206 (352)
..++|+++|.||||||||+|+|++..........++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4579999999999999999999984322111114455565
No 64
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.58 E-value=8.4e-08 Score=81.69 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=63.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHhC-----------CCCEEEEEEcccCCCccchHHHHHHHH------hh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQN-----------IRPMVLVLNKRDLINSKHESLIEEKVR------KE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~~-----------~k~~ilVlNK~Dl~~~~~~~~~~~~~~------~~ 70 (352)
..+..+|++|+|+|+.++.+... ..+..++.. +.|+++|+||+|+.+.....++.+.+. ..
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 45789999999999997643211 223333322 789999999999987754444444331 12
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
+. +++.+||+++ .|+++++++|.+.+...
T Consensus 162 ~~---~~~~~Sa~~g--~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 162 PF---VIFASNGLKG--TGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CE---EEEECBTTTT--BTHHHHHHHHHHHHHHH
T ss_pred ee---EEEEeeCCCc--cCHHHHHHHHHHHHHHH
Confidence 23 4889999999 99999999998776543
No 65
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.58 E-value=3.9e-08 Score=82.18 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=43.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+. ....+..|++|.+.........+..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS------KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT------CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 45689999999999999999999963 223344566655443222223455789999999754
No 66
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.57 E-value=1.8e-07 Score=77.35 Aligned_cols=92 Identities=17% Similarity=0.098 Sum_probs=63.9
Q ss_pred HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i 80 (352)
...+..+|++++|+|+.++.+.. ...+..++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 34678999999999998874322 223334433 378999999999998765444554444221111 0148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|++++++++.+.+.
T Consensus 149 Sa~~~--~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 149 SATKG--TGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTTC--TTHHHHHHHHHHHHH
T ss_pred cCCCC--cCHHHHHHHHHHHHh
Confidence 99999 999999999987665
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.57 E-value=9.2e-08 Score=79.89 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=40.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+. .......|++|.+.........+ ..+.++||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN------TFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC------C---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC------CCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 45689999999999999999999862 22234455555544322222233 2588999999543
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.56 E-value=1.5e-07 Score=79.78 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=66.8
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCH----HHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNH----LLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEV 77 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~----~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v 77 (352)
....+..+|++|+|+|+.++....+. .+..++. .+.|+++|+||+|+.+....++..+++.+.+.. ++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~ 168 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF--PV 168 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCS--CE
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCc--eE
Confidence 34578899999999999854322222 2223332 468999999999998765556666666555651 39
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.+||+++ .|+++++++|.+.+..
T Consensus 169 ~~~Sa~~~--~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 169 LEAVATEG--KGVFETLKEVSRLVLA 192 (198)
T ss_dssp EECBGGGT--BTHHHHHHHHHHHHHH
T ss_pred EEEecCCC--cCHHHHHHHHHHHHHH
Confidence 99999999 9999999998876543
No 69
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.56 E-value=3.2e-08 Score=98.34 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=32.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCce--ecCCCCCceeE
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV--PVGPKAGVTRS 210 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~--~~~~~pg~T~~ 210 (352)
...++|+++|.+|+|||||+|+|++ .... .++..|+||+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg-----~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLE-----QEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHT-----SCCSSCCCCSSCCCCSE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC-----CccccCccCCCCccceE
Confidence 3468999999999999999999997 3332 57788888663
No 70
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.55 E-value=4.8e-08 Score=80.63 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=34.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|++.+ .....+++.+|+|.... +.... ...+.++||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG-----VEDGPEAEAAGHTYDRS--IVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC-----C----------CEEEEE--EEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcC-----ccccCCCCccccceEEE--EEECCEEEEEEEEECCCCcc
Confidence 47899999999999999999986 44556778888887632 22222 22578999999764
No 71
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.55 E-value=9.6e-08 Score=93.16 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=64.1
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCc----CHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGR----NHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~----~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i 80 (352)
++.+...+..+|++|+|+|+.++.+.. ...+.+.+ .++|+++|+||+|+.+...... +.+.+.+.. +++.+
T Consensus 303 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~--~~i~v 377 (476)
T 3gee_A 303 IRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADALI--RAIADGTGT--EVIGI 377 (476)
T ss_dssp -----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTS--CEEEC
T ss_pred HHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchhH--HHHHhcCCC--ceEEE
Confidence 355666889999999999999886652 22233333 5789999999999987654322 333333222 59999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++|+++|.+.+.
T Consensus 378 SAktg--~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNG--DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTT--BSHHHHHHHHTHHHH
T ss_pred EECCC--CCHHHHHHHHHHHHh
Confidence 99999 999999999988776
No 72
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.55 E-value=7.5e-08 Score=80.77 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=60.6
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++.+..+.. ++.+|
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S 149 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA---FLESS 149 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEECC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc---EEEEe
Confidence 35678999999999986532211 11112222 3689999999999975433 23444444455554 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|++++++.+.+.+..
T Consensus 150 a~~~--~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 150 AKEN--QTAVDVFRRIILEAEK 169 (181)
T ss_dssp TTSH--HHHHHHHHHHHHHHHT
T ss_pred cCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999877654
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.54 E-value=1.7e-07 Score=77.05 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~ 79 (352)
....+.++|++++|+|++++.+.. ...+..++. .+.|+++|+||+|+.+.....++.+.+...... .-+++.
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence 345689999999999998763221 122333332 378999999999998764444444433211110 014889
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|++++++++.+.+.
T Consensus 141 ~Sa~~~--~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 141 TCATSG--DGLYEGLDWLSNQLR 161 (164)
T ss_dssp CBTTTT--BTHHHHHHHHHHHC-
T ss_pred cccCCC--cCHHHHHHHHHHHHh
Confidence 999999 999999999887654
No 74
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.3e-07 Score=79.99 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=64.2
Q ss_pred HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i 80 (352)
...+..+|++++|+|++++.+.. ...+..+++ .+.|+++|+||+|+.+.....++.+.+...... ..+++.+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 157 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEc
Confidence 35678999999999998874322 122333332 368999999999998754444554544321111 1148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
||+++ .|+++++++|.+.+...
T Consensus 158 Sa~~g--~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 158 CALTG--EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp BTTTT--BTHHHHHHHHHHHHCC-
T ss_pred cCCCC--cCHHHHHHHHHHHHHHH
Confidence 99999 99999999998877543
No 75
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.54 E-value=1.2e-07 Score=80.44 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=62.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF 79 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~ 79 (352)
..+.++|++++|+|++++.+.. ...+..++. .+.|+++|+||+|+.+....+++.+.+....+. ..+++.
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence 5678999999999998753221 123333333 267999999999998765445555554211110 114889
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+||+++ .|+++++++|.+.+..
T Consensus 166 ~Sa~~~--~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 166 SDAIKG--EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CBTTTT--BTHHHHHHHHHHHC--
T ss_pred ccCCCC--cCHHHHHHHHHHHHHH
Confidence 999999 9999999999876643
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.53 E-value=3.4e-07 Score=76.82 Aligned_cols=89 Identities=22% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHH---h-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSV---Q-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
...+..+|++++|+|+.++.+... ..+..+. . .+.|+++|+||+|+.+... ..+..++.+..+.+ ++.+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~ 160 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP---YIET 160 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC---EEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe---EEEe
Confidence 356788999999999987632221 1122222 2 5689999999999976432 23344444455665 9999
Q ss_pred ecC-CCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCR-NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~-~~~~~gi~~L~~~i~~~~~ 102 (352)
||+ ++ .|+++++++|.+.+.
T Consensus 161 Sa~~~~--~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 161 SAKDPP--LNVDKTFHDLVRVIR 181 (183)
T ss_dssp BCSSSC--BSHHHHHHHHHHHHH
T ss_pred ccCCCC--CCHHHHHHHHHHHHh
Confidence 999 99 999999999887654
No 77
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=1.8e-07 Score=78.21 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=63.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+..+ ..+..+.. .+.|+++|+||+|+.++.. ..+..++.+..+.. ++.+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 153 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP---FMET 153 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC---EEEC
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe---EEEE
Confidence 3456789999999999987643222 11222221 4689999999999986532 23344444455665 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|++++++++.+.+..
T Consensus 154 Sa~~~--~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 154 SAKTG--LNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHC
T ss_pred eCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999999876654
No 78
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.53 E-value=1.4e-07 Score=77.76 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=61.9
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+... ..+..+.. ...|+++|+||+|+.++.. ..+..++....+.. ++.+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 148 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL---FMET 148 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe---EEEE
Confidence 3456789999999999987632211 11222222 3678899999999975432 23444444445554 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.++
T Consensus 149 Sa~~g--~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 149 SAKTS--MNVNEIFMAIAKKLP 168 (170)
T ss_dssp CTTTC--TTHHHHHHHHHHTSC
T ss_pred eCCCC--CCHHHHHHHHHHHHh
Confidence 99999 999999999887654
No 79
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=1.5e-07 Score=78.65 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=39.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+. ........|.++.+.........+. .+.++||||...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG-----AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS-----CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC-----CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45689999999999999999999863 2222233344444433222122222 588999999653
No 80
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.52 E-value=8.3e-08 Score=88.43 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=46.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe-cCCCcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI-SEKPLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~~l~DtPGi~ 232 (352)
..++|+++|.||||||||+|++.+ .....+++.+|+|.+....... .++-.+.++||||..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~-----~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFS-----NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHS-----CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh-----CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 357899999999999999999986 3345566788888887543322 244478999999964
No 81
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.52 E-value=2.8e-07 Score=90.19 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=69.9
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchH----HHHHHHHhh-cCCCCcE
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHES----LIEEKVRKE-QSHISEV 77 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~-~~~~~~v 77 (352)
..+.+...+..+|++|+|+|++++......+...+++ .+.|.++|+||+|+.+++..+ ++.+++... ++...++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 4566778899999999999999875443333333333 578889999999999754332 233344433 2222259
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+++||+++ .|+++|+++|.+.++
T Consensus 166 i~vSA~~g--~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTG--FGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTC--TTHHHHHHHHHHHHH
T ss_pred EEEECcCC--CCHHHHHHHHHHhhc
Confidence 99999999 999999999988765
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.51 E-value=1.7e-07 Score=78.99 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=64.0
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i 80 (352)
...+..+|++++|+|+.++.+..+ ..+.++++ .+.|+++|+||+|+.+.....++.+.+..... ...+++.+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 159 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEe
Confidence 346789999999999987643221 22333332 36899999999999876554455444421111 11148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|++++++++.+.+.+
T Consensus 160 Sa~~~--~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 160 SAVTG--EDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHT
T ss_pred eCCCC--CCHHHHHHHHHHHHHh
Confidence 99999 9999999999877754
No 83
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.51 E-value=4.4e-07 Score=76.54 Aligned_cols=92 Identities=16% Similarity=0.042 Sum_probs=65.2
Q ss_pred HHHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351 7 DIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI 78 (352)
Q Consensus 7 ~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~ 78 (352)
.....+..+|++++|+|+.++.+..+ ..+. .+.. .+.|+++|+||+|+.+... .....++....+.. ++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 162 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP---YF 162 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC---EE
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC---EE
Confidence 35567899999999999987643322 1122 2221 3789999999999976432 23444444455665 99
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
.+||+++ .|+++++++|.+.+..
T Consensus 163 ~~Sa~~~--~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANG--TNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred EEECCCC--CCHHHHHHHHHHHHHH
Confidence 9999999 9999999998876643
No 84
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.51 E-value=2.9e-07 Score=76.65 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=62.9
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCH-HHH-HHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQ-QSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~-~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+..+. .+. .+.. .+.|+++|+||+|+.+... .++..++.++.+.. ++.+
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL---FLEA 157 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEE
Confidence 45678899999999999876432221 111 1111 4678999999999975432 34455555555654 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHh
Q psy15351 81 NCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~ 101 (352)
||+++ .|++++++++.+.+
T Consensus 158 Sa~~~--~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 158 SAKTG--ENVEDAFLEAAKKI 176 (179)
T ss_dssp CTTTC--TTHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHH
Confidence 99999 99999999887654
No 85
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.51 E-value=2.2e-07 Score=77.70 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=63.1
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC-HHH-HHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN-HLL-QQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l-~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+... ..+ ..+.. .+.|+++|+||+|+.+... ..+..++.+..+.. ++.+|
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S 155 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF---FMETS 155 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEECC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE---EEEEE
Confidence 456788999999999987543211 111 12222 3678999999999976433 34455555555654 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+..
T Consensus 156 a~~g--~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 156 AKTA--TNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSSC--TTHHHHHHHHHHTCC-
T ss_pred CCCC--CCHHHHHHHHHHHHHh
Confidence 9999 9999999999876654
No 86
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=9.4e-08 Score=81.34 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=44.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|||||||+|+|.+.. ....+.+.+|+|..... +... ....+.++||||..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDH----FDHNISPTIGASFMTKT-VPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCC----CCTTCCCCSSEEEEEEE-EECSSSEEEEEEEEECCSG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCC----CCCCcCCCcceeEEEEE-EEeCCEEEEEEEEcCCCch
Confidence 356899999999999999999999731 22356677887765432 2222 22368999999954
No 87
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.50 E-value=2.9e-07 Score=77.88 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=62.6
Q ss_pred HhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEeec
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTNC 82 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iSa 82 (352)
.+..+|++++|+|++++.+.. ...+.+++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+||
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 467899999999998774322 123334433 368999999999998765444444433211111 014889999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|++++++++.+.+.+
T Consensus 166 ~~~--~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 166 KTG--DGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTC--TTHHHHHHHHHHHHHH
T ss_pred CCc--cCHHHHHHHHHHHHHh
Confidence 999 9999999999887754
No 88
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=1.2e-07 Score=78.31 Aligned_cols=60 Identities=30% Similarity=0.346 Sum_probs=39.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
.++|+++|.+|||||||+|++.+.. ......+..|.+.... .+.... ...+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND----FAENKEPTIGAAFLTQ-RVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC----CCTTCCCCSSEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCccceeEEEE-EEEECCEEEEEEEEECCCCh
Confidence 4789999999999999999999632 1223345555554432 222222 1268899999954
No 89
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.48 E-value=1.3e-07 Score=88.83 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=28.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg 206 (352)
..++|+++|.||||||||+|+|.+..+.......++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3478999999999999999999984332222224455565
No 90
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.48 E-value=3.7e-07 Score=77.58 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-CCCCEEEEEEcccCCCcc-chHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-NIRPMVLVLNKRDLINSK-HESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-~~k~~ilVlNK~Dl~~~~-~~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
....+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.... ..++..+++++.+.. ++.+||+
T Consensus 110 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~ 186 (208)
T 3clv_A 110 VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL---FIQTSAK 186 (208)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE---EEEECTT
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc---EEEEecC
Confidence 4566789999999999987643221 11222222 468999999999932222 245566666666664 9999999
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy15351 84 NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~ 102 (352)
++ .|+++++++|.+.+.
T Consensus 187 ~~--~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 187 TG--TNIKNIFYMLAEEIY 203 (208)
T ss_dssp TC--TTHHHHHHHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHH
Confidence 99 999999999877654
No 91
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.48 E-value=3.4e-07 Score=75.17 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++.+..+.+ ++.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN---YVE 145 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EEE
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe---EEE
Confidence 3456789999999999987532211 11112221 3789999999999976432 34455555555654 899
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|++++++++.+.+.
T Consensus 146 ~Sa~~~--~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 146 TSAKTR--ANVDKVFFDLMREIR 166 (168)
T ss_dssp CCTTTC--TTHHHHHHHHHHHHH
T ss_pred eCCCCC--CCHHHHHHHHHHHHH
Confidence 999999 999999999876553
No 92
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.48 E-value=4.6e-07 Score=74.71 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=62.7
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .+...++.++.+.+ ++.+||
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa 146 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP---FIESSA 146 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC---EEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe---EEEEEC
Confidence 456789999999999987643221 11112221 3689999999999954332 23334444455665 999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|+++++++|.+.+.+
T Consensus 147 ~~~--~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 147 KND--DNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTT--BSHHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHH
Confidence 999 9999999999877654
No 93
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.48 E-value=1.2e-07 Score=78.15 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=41.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|+|.+.. ......+..|++..... +.... ...+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQ----FHEFQESTIGAAFLTQT-VCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC----CCTTCCCCSSEEEEEEE-EEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC----CCCCCCCccceEEEEEE-EEECCEEEEEEEEeCCCcHH
Confidence 46899999999999999999999631 12223445565554332 22222 23688999999643
No 94
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.47 E-value=2.1e-07 Score=78.32 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=39.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~ 234 (352)
..++|+++|.+|||||||+|+|.+. . .....++++...........+. .+.++||||....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN-----H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS-----S--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 4689999999999999999999963 2 2334445544433322222333 3678999996643
No 95
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.47 E-value=7.9e-08 Score=80.54 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEe
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~i 80 (352)
+.+++..+..+|++++|+|++++.+.....+...+. .+.|+++|+||+|+.+... .+ ....+. +++.+
T Consensus 74 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~---~~~~~ 145 (172)
T 2gj8_A 74 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGH---ALIRL 145 (172)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTE---EEEEC
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCC---ceEEE
Confidence 445667789999999999999876654333322222 3689999999999864321 00 001122 48899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 146 SA~~g--~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTG--EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTC--TTHHHHHHHHHHHC--
T ss_pred eCCCC--CCHHHHHHHHHHHhhh
Confidence 99999 9999999999876653
No 96
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.47 E-value=1.1e-07 Score=82.02 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=37.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
..+.+|+++|.+|||||||+|+|.+. .....+++.+|+|+... .+...+ .+.++||||+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~----~~~~~~~~~~G~~~~~~-~~~~~~--~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ----KSLARTSKTPGRTQLIN-LFEVAD--GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEE-EEEEET--TEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC----CccccccCCCccceeeE-EEEecC--CEEEEECcCCccc
Confidence 45689999999999999999999873 11456678899887643 232222 6889999998753
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.47 E-value=3.9e-07 Score=77.62 Aligned_cols=92 Identities=22% Similarity=0.127 Sum_probs=62.1
Q ss_pred HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i 80 (352)
...+..+|++++|+|+.++.+.. ...+..++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 170 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEC
Confidence 35678999999999998763221 122333332 368999999999998764444554443221111 1148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.+.
T Consensus 171 SA~~g--~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 171 CATQG--TGLYDGLDWLSHELS 190 (192)
T ss_dssp BTTTT--BTHHHHHHHHHHHTT
T ss_pred cCCCc--CCHHHHHHHHHHHHh
Confidence 99999 999999999876553
No 98
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.47 E-value=1.7e-07 Score=79.62 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=40.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|+|.+... .....+..|.+.... .+... ....+.++||||....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEF----SHDSRTTIGVEFSTR-TVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCC----CSSCCCCSSEEEEEE-EEEETTEEEEEEEEEESCCCTT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEE-EEEECCEEEEEEEEeCCCchhh
Confidence 4569999999999999999999997321 112223344443322 12221 1225789999998653
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.47 E-value=3.2e-07 Score=79.53 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=60.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc-hHH-HHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH-ESL-IEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~-~~~-~~~~~~~~~~~~~~v~~iSa 82 (352)
..+..+|++|+|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+... ... ..++....+. +++.+||
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa 156 (218)
T 4djt_A 80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY---EYFEISA 156 (218)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC---EEEEEBT
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC---cEEEEec
Confidence 456789999999999876433221 1111111 3689999999999986532 222 2233333344 4999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~~ 105 (352)
+++ .|+++++++|.+.+....
T Consensus 157 ~~g--~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 157 KTA--HNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTT--BTTTHHHHHHHHHHHCCT
T ss_pred CCC--CCHHHHHHHHHHHHhccc
Confidence 999 999999999988776543
No 100
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.46 E-value=3.1e-07 Score=77.78 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+..++. .+.|+++|+||+|+.+.....++.+.+..... ...+++.
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence 3456789999999999987532211 22333332 46899999999999876444444444322111 1114789
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|+++++++|.+.+.
T Consensus 164 ~SA~~g--~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 164 ISCKEK--DNIDITLQWLIQHSK 184 (188)
T ss_dssp CCTTTC--TTHHHHHHHHHHTCC
T ss_pred EECCCC--CCHHHHHHHHHHHHH
Confidence 999999 999999999987654
No 101
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.46 E-value=3e-07 Score=76.56 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.++.. ..+..++....+.. ++.+|
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S 157 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM---FIETS 157 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EEEEB
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe---EEEEe
Confidence 456789999999999987533211 11222221 3688999999999976433 34444555555654 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++++++|.+.+.
T Consensus 158 a~~~--~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAG--YNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTT--BSHHHHHHHHHHTCC
T ss_pred CCCC--CCHHHHHHHHHHHHh
Confidence 9999 999999999887654
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.46 E-value=1.6e-07 Score=78.98 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=60.1
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i 80 (352)
...+..+|++++|+|++++.+... ..+..++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence 346789999999999998643221 22333332 468999999999998754444444443211111 0148899
Q ss_pred ecCCCCCCCHHHHHHHHHH
Q psy15351 81 NCRNPNCKGVQKILPTLQH 99 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~ 99 (352)
||+++ .|+++++++|.+
T Consensus 163 Sa~~g--~gi~~l~~~l~~ 179 (181)
T 2h17_A 163 CALTG--EGLCQGLEWMMS 179 (181)
T ss_dssp BTTTT--BTHHHHHHHHHT
T ss_pred cCCCC--cCHHHHHHHHHh
Confidence 99999 999999998864
No 103
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.46 E-value=1e-06 Score=88.21 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchHHHHHHHHh-hcCCCCcEEEe
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK-EQSHISEVIFT 80 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-~~~~~~~v~~i 80 (352)
+....+...+..+|.+|+|+|+.++......... .....+.|+++|+||+|+.+... ....+.+.+ .+....+++++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~v 161 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGIDATDAVRC 161 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCCCTTCEEE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH-HHHHHHHHHHhCCCcceEEEe
Confidence 3445677889999999999999987665443322 22226889999999999986542 222222322 24433358999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhccccccccccce-eEEEeccCCCCchhHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPNVGKSSIINALRSS 137 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~nvgksslin~l~~~ 137 (352)
||+++ .|+++|++++.+.++..... ....+.. ..-..-.+++|+.++++-+.+.
T Consensus 162 SAktg--~GI~~Ll~~I~~~lp~p~~~-~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 162 SAKTG--VGVQDVLERLVRDIPPPEGD-PEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CTTTC--TTHHHHHHHHHHHSCCCCCC-TTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred ecccC--CCchhHHHHHhhcCCCcccc-ccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 99999 99999999999887753211 1111111 1112223667777666555443
No 104
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.46 E-value=7.2e-07 Score=75.60 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=63.6
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+.... ....++....+.+ ++.+
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 158 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP---FLET 158 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC---EEEE
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc---EEEE
Confidence 4456789999999999987533211 11111121 36899999999999866432 3333444445665 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 159 Sa~~g--~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 159 SAKNA--TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998876654
No 105
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.45 E-value=5.9e-07 Score=86.06 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCc
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISE 76 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 76 (352)
..+.+...+..+|++|+|+|++++. .....+...++. ..+|+++|+||+|+.+.+. .+++.+++........+
T Consensus 96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 175 (410)
T 1kk1_A 96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 175 (410)
T ss_dssp HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence 4556777888999999999999764 222222222222 4568999999999987653 23334444321111225
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
++++||+++ .|+++|+++|.+.++.
T Consensus 176 ~i~vSA~~g--~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 176 IIPISALHG--ANIDVLVKAIEDFIPT 200 (410)
T ss_dssp EEECBTTTT--BSHHHHHHHHHHHSCC
T ss_pred EEEeeCCCC--CCHHHHHHHHHHhCCC
Confidence 999999999 9999999999987664
No 106
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.45 E-value=2.2e-07 Score=78.62 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=41.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+.. ......+..|++..... +.... ...+.++||||...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS----FTPAFVSTVGIDFKVKT-VYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC----CCCSCCCCCCCEEEEEE-EEETTEEEEEEEEECCSCCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC----CCCCcCCceeEEEEEEE-EEECCeEEEEEEEeCCCcHH
Confidence 456899999999999999999999632 11223444555544322 22221 22688999999654
No 107
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.45 E-value=6.1e-07 Score=74.80 Aligned_cols=87 Identities=15% Similarity=0.028 Sum_probs=62.2
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+.. .+..++ . ...|+++|+||+|+.+... .....++....+.+ ++.+|
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S 151 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ---LFETS 151 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC---EEECB
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe---EEEEE
Confidence 3578899999999998753221 222222 1 4689999999999876543 23344444455665 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+..
T Consensus 152 a~~~--~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 152 AKEN--VNVEEMFNCITELVLR 171 (181)
T ss_dssp TTTT--BSHHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999876654
No 108
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=3.3e-07 Score=77.93 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+... .++..++.++.+.. ++.+|
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 166 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI---VVETS 166 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE---EEECB
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEe
Confidence 456789999999999987642211 11111121 3689999999999975332 34555555555654 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+.+
T Consensus 167 a~~~--~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNA--INIEELFQGISRQIPP 186 (192)
T ss_dssp TTTT--BSHHHHHHHHHHTCC-
T ss_pred CCCC--cCHHHHHHHHHHHHHh
Confidence 9999 9999999999876654
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.44 E-value=4.7e-07 Score=75.42 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=61.9
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC---CC---CcEEEeecC
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS---HI---SEVIFTNCR 83 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~---~~---~~v~~iSa~ 83 (352)
.+..+|++++|+|++++...........+. .+.|+++|+||+|+.+.. ..+..+.+.+... .. .+++.+||+
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 457899999999998765433333333333 578999999999998643 2233333322211 00 258899999
Q ss_pred CCCCCCHHHHHHHHHHHhhhc
Q psy15351 84 NPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~~~ 104 (352)
++ .|+++++++|.+.+...
T Consensus 154 ~~--~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 154 TK--EGLDHLLEMILLVSEME 172 (178)
T ss_dssp SS--HHHHHHHHHHHHHHHHT
T ss_pred CC--CCHHHHHHHHHHhhhhh
Confidence 99 99999999998776543
No 110
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.44 E-value=4.3e-07 Score=76.18 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=64.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++.++.+.. ++.
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~ 159 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN---YVE 159 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCe---EEE
Confidence 3456789999999999987532211 11112222 3789999999999976432 34555555555654 899
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+||+++ .|+++++++|.+.+..
T Consensus 160 ~Sa~~~--~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 160 TSAKTR--ANVDKVFFDLMREIRA 181 (187)
T ss_dssp CCTTTC--TTHHHHHHHHHHHHHH
T ss_pred eCCCCC--CCHHHHHHHHHHHHHH
Confidence 999999 9999999999876643
No 111
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.44 E-value=7.5e-08 Score=90.36 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.....|+++|+||+|||||+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999985
No 112
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.43 E-value=3.5e-07 Score=77.09 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=40.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|||||||+|++.+. ......++.|.+... +.. .+..+.++||||..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKT---LEH-RGFKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC-----CCSSCCCCSSEEEEE---EEE-TTEEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC-----CCCcccccCccceEE---EEE-CCEEEEEEECCCCH
Confidence 35799999999999999999999973 233444455544332 222 34578999999973
No 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.43 E-value=7.3e-07 Score=75.08 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=62.3
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+..++. .+.|+++|+||+|+.+....+++.+.+...... ..+++.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 3456789999999999987633211 22333332 468999999999998765444444433211110 114889
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|++++++++.+.+.
T Consensus 157 ~Sa~~g--~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 157 CSALTG--EGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCTTTC--TTHHHHHHHHHHTC-
T ss_pred ccCCCC--CCHHHHHHHHHHHHH
Confidence 999999 999999999987654
No 114
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.43 E-value=2.9e-07 Score=76.69 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=36.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~ 232 (352)
..++|+++|.+|||||||+|++.+... .....+..|.+.... .+...+. -.+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF----DTQLFHTIGVEFLNK-DLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC----CC----CCSEEEEEE-EEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeEEEE-EEEECCEEEEEEEEeCCCch
Confidence 468999999999999999999986311 112223333332221 2222211 268999999953
No 115
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.43 E-value=7.8e-08 Score=92.33 Aligned_cols=64 Identities=30% Similarity=0.352 Sum_probs=40.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|+|||||+|+|++ .....++..+|+|.+.........+ ..+.++||||+...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~-----~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG-----QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc-----CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 4568999999999999999999997 4455678899999887653333233 37999999999864
No 116
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.43 E-value=6.5e-07 Score=85.73 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=60.2
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCC-CCcCHHHHHHHh--CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCc
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPF-TGRNHLLQQSVQ--NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISE 76 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~-~~~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 76 (352)
..+.+...+..+|++|+|+|++++. .....+....++ ..+|+++|+||+|+.+.+. .+++.+++++......+
T Consensus 94 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (408)
T 1s0u_A 94 LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP 173 (408)
T ss_dssp HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe
Confidence 3445666778889999999999864 222222222222 3468999999999987543 23444444332111125
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
++.+||+++ .|+++|+++|.+.++.
T Consensus 174 ~i~vSA~~g--~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 174 IIPISAHHE--ANIDVLLKAIQDFIPT 198 (408)
T ss_dssp EEEC--------CHHHHHHHHHHHSCC
T ss_pred EEEeeCCCC--CCHHHHHHHHHHhCCC
Confidence 999999999 9999999999887654
No 117
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.42 E-value=5e-07 Score=76.83 Aligned_cols=91 Identities=14% Similarity=0.009 Sum_probs=61.8
Q ss_pred HHHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhh-cCCCCcEE
Q psy15351 7 DIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE-QSHISEVI 78 (352)
Q Consensus 7 ~~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~~~~v~ 78 (352)
.....+..+|++|+|+|+.++.+..+ ..+...+. .+.|+++|+||+|+.+... .++..++.+.. +. +++
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~ 167 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM---RFC 167 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTC---EEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC---eEE
Confidence 34567789999999999987643322 11122222 3689999999999976432 22333333332 33 489
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
.+||+++ .|+++++++|.+.+.
T Consensus 168 ~~SA~~g--~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 168 EASAKDN--FNVDEIFLKLVDDIL 189 (192)
T ss_dssp ECBTTTT--BSHHHHHHHHHHHHH
T ss_pred EEeCCCC--CCHHHHHHHHHHHHH
Confidence 9999999 999999999876553
No 118
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.42 E-value=3.4e-07 Score=77.67 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=41.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+. .......|.+|.+.........+ ..+.++||||...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS------CCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC------CCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45689999999999999999999962 22233345554443322222222 2588999999643
No 119
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.42 E-value=5.1e-07 Score=76.40 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=62.0
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
..+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+... ..+..++.++.+.. ++.+||
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa 166 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE---FFEASA 166 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe---EEEEEC
Confidence 46788999999999987532221 11222222 3789999999999976432 23344444445654 999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|+++++++|.+.+.+
T Consensus 167 ~~g--~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KEN--INVKQVFERLVDVICE 185 (189)
T ss_dssp TTT--BSHHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHH
Confidence 999 9999999999876643
No 120
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.42 E-value=2.9e-07 Score=75.58 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=36.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe-eeeEEecCC-CcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~-~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|++.+. ... ...+.++... ...+...+. ..+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG-----TFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS-----CCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC-----CCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999863 111 1122222221 112222221 2488999999653
No 121
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.42 E-value=5.2e-07 Score=92.11 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSH 192 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~ 192 (352)
..++|+++|.+|+|||||+|+|.+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999999853
No 122
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.41 E-value=4.3e-07 Score=75.00 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=36.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~ 232 (352)
..++|+++|.+|||||||+|++.+... .....|..+.+.........+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF------NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC------CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC------CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999996321 1122233332222111112222 57889999964
No 123
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.41 E-value=7.2e-07 Score=73.30 Aligned_cols=88 Identities=20% Similarity=0.146 Sum_probs=60.4
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhh-cCCCCcEEE
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE-QSHISEVIF 79 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~~~~v~~ 79 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .++..++.+.. +. +++.
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 145 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNC---AFLE 145 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSC---EEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCC---cEEE
Confidence 456788999999999987532222 12222222 4789999999999976432 23333444333 33 4899
Q ss_pred eecCCCCCCCHHHHHHHHHHHh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
+||+++ .|+++++++|.+.+
T Consensus 146 ~Sa~~~--~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSK--INVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTT--BSHHHHHHHHHHHH
T ss_pred ecCCCC--CCHHHHHHHHHHHH
Confidence 999999 99999999987654
No 124
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.41 E-value=6.7e-07 Score=74.50 Aligned_cols=91 Identities=16% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh------CCCC-EEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ------NIRP-MVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEV 77 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~------~~k~-~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v 77 (352)
....+..+|++++|+|+.++.+..+. .+...+. ...| +++|+||+|+.+... .++..++.+..+.. +
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~ 149 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS---S 149 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---E
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc---E
Confidence 34567899999999999876432221 1111111 2566 789999999975432 23344444445654 8
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.+||+++ .|+++++++|.+.+..
T Consensus 150 ~~~Sa~~~--~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 150 HFVSAKTG--DSVFLCFQKVAAEILG 173 (178)
T ss_dssp EEECTTTC--TTHHHHHHHHHHHHTT
T ss_pred EEEeCCCC--CCHHHHHHHHHHHHHh
Confidence 99999999 9999999999876654
No 125
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.41 E-value=1.1e-06 Score=76.80 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=60.4
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCH---HHHHHHh---CCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCCcEE
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNH---LLQQSVQ---NIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHISEVI 78 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~---~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~v~ 78 (352)
......+|++|+|+|++++.+.... .+...+. .+.|+++|+||+|+.+..... ...+.+.+......+++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 3446788999999999987554322 2222232 278999999999998654321 12222322221012489
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
.+||+++ .|+++++++|.+.+..
T Consensus 183 ~~SA~~g--~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTG--VGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred EEecccC--CCHHHHHHHHHHHHHH
Confidence 9999999 9999999999876653
No 126
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.41 E-value=4e-07 Score=75.26 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=40.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|++.+. ......++.|.+... +.. .+..+.++||||...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG-----EVVTTIPTIGFNVET---VTY-KNLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS-----SCCCCCCCSSEEEEE---EEE-TTEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC-----CCCCcCCcCccceEE---EEE-CCEEEEEEECCCChh
Confidence 35689999999999999999999863 222333344433321 222 345789999999753
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.41 E-value=4.2e-07 Score=76.19 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+... ..+..++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 45788999999999987633221 22333332 467999999999998764444554443221111 11488999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+.+
T Consensus 161 a~~~--~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKG--EGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGT--BTHHHHHHHHHHHHHH
T ss_pred CCCC--cCHHHHHHHHHHHHHh
Confidence 9999 9999999999876653
No 128
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.41 E-value=4.1e-07 Score=74.62 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=62.3
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|.+++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++..+.+.+ ++.
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~ 144 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP---FME 144 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC---EEE
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC---EEE
Confidence 3456789999999999987532211 11222222 4789999999999975433 23334444445665 999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|+++++++|.+.+.
T Consensus 145 ~Sa~~~--~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 145 TSAKSK--TMVDELFAEIVRQMN 165 (167)
T ss_dssp ECTTCH--HHHHHHHHHHHHHHH
T ss_pred ecCCCC--cCHHHHHHHHHHHHh
Confidence 999999 999999999877654
No 129
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.40 E-value=1.6e-07 Score=91.24 Aligned_cols=91 Identities=19% Similarity=0.361 Sum_probs=64.8
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRN 84 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~ 84 (352)
+++++..+..+|++|+|+|+.++....+..+.+.+ ..+|+++|+||+|+.+........+ + ..+. +++.+||++
T Consensus 294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l-~~~piivV~NK~Dl~~~~~~~~~~~-~-~~~~---~~i~iSAkt 367 (462)
T 3geh_A 294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHRPLILVMNKIDLVEKQLITSLEY-P-ENIT---QIVHTAAAQ 367 (462)
T ss_dssp -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHH-TTSCEEEEEECTTSSCGGGSTTCCC-C-TTCC---CEEEEBTTT
T ss_pred HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc-cCCcEEEEEECCCCCcchhhHHHHH-h-ccCC---cEEEEECCC
Confidence 45566678999999999999988766555555555 5689999999999987653221100 0 0122 489999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q psy15351 85 PNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 85 ~~~~gi~~L~~~i~~~~~~ 103 (352)
+ .|+++|+++|.+.+..
T Consensus 368 g--~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 K--QGIDSLETAILEIVQT 384 (462)
T ss_dssp T--BSHHHHHHHHHHHHTT
T ss_pred C--CCHHHHHHHHHHHHhc
Confidence 9 9999999999887754
No 130
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.40 E-value=3.1e-07 Score=76.48 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=39.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+.. ......+..|.+.... .+.... ...+.++||||..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK----FMADCPHTIGVEFGTR-IIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC----CCSSCTTSCCCCEEEE-EEEETTEEEEEEEEECTTGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC----CCCCCCCccceEEEEE-EEEECCeEEEEEEEECCCCh
Confidence 356899999999999999999999632 1122333444443322 222221 1258899999954
No 131
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.40 E-value=2.8e-07 Score=77.56 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=43.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|+|.+. ....+.++.|.+... +.. .+..+.++||||...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN-----EVVHTSPTIGSNVEE---IVI-NNTRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT-----SCEEEECCSSSSCEE---EEE-TTEEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC-----CCCccCCcCceeeEE---EEE-CCEEEEEEECCCCHh
Confidence 45799999999999999999999973 335666777765432 222 345789999999753
No 132
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.39 E-value=2.4e-07 Score=78.16 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=43.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|++.+ .....+.+++|++... +.. .+..+.++||||..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----~~~~~~~~t~g~~~~~---~~~-~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS-----EDISHITPTQGFNIKS---VQS-QGFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC-----SCCEEEEEETTEEEEE---EEE-TTEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc-----CCCCcccCcCCeEEEE---EEE-CCEEEEEEECCCCH
Confidence 4579999999999999999999997 3344556667765432 222 24468999999964
No 133
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.39 E-value=3.9e-07 Score=83.70 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC-ccchHHHHHHHHhh-cCCCCcEEEeecCCC
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN-SKHESLIEEKVRKE-QSHISEVIFTNCRNP 85 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~-~~~~~~~~~~~~~~-~~~~~~v~~iSa~~~ 85 (352)
...+..+|++++|+|+.. ++..+..+.+.+. .+.|.++|+||+|+.. .....+..+.+.+. +. ..++++||+++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~--~~~i~iSA~~g 159 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF--LDIVPISAETG 159 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC--SEEEECCTTTT
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc--CceEEEECCCC
Confidence 456789999999999987 6555555555554 4799999999999987 33344445545432 33 25899999999
Q ss_pred CCCCHHHHHHHHHHHhhhcc
Q psy15351 86 NCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 86 ~~~gi~~L~~~i~~~~~~~~ 105 (352)
.|+++|++.+.+.+++.+
T Consensus 160 --~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 160 --LNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp --TTHHHHHHHHHTTCCBCC
T ss_pred --CCHHHHHHHHHHhCCcCC
Confidence 999999999998877543
No 134
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.39 E-value=3.1e-07 Score=75.60 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=37.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|+|.+... .....+..|.+... ..+...+ ...+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF----TKDYKKTIGVDFLE-RQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC----CCCSSCCCSSSEEE-EEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCceEEEEEE-EEEEECCEEEEEEEEcCCCcHh
Confidence 468999999999999999999986321 11122222222211 1222221 12588999999654
No 135
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.39 E-value=4.6e-07 Score=74.64 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc---c--hHHHHHHHHhhcCCCCcE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK---H--ESLIEEKVRKEQSHISEV 77 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~---~--~~~~~~~~~~~~~~~~~v 77 (352)
....+..+|++++|+|++++.+..+ ..+..+.. .+.|+++|+||+|+.+.. . .....++....+.. +
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~---~ 145 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL---F 145 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE---E
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE---E
Confidence 4456789999999999987633211 11112222 367899999999997642 1 12233333344554 8
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
+.+||+++ .|+++++++|.+.+
T Consensus 146 ~~~Sa~~~--~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 146 FETSAKTG--ENVNDVFLGIGEKI 167 (170)
T ss_dssp EECCTTTC--TTHHHHHHHHHTTS
T ss_pred EEEeCCCC--CCHHHHHHHHHHHH
Confidence 99999999 99999999987654
No 136
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.39 E-value=6.8e-07 Score=73.52 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++.++.+.+ ++.+||
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa 148 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR---FYRTSV 148 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---EEECBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe---EEEEec
Confidence 456789999999999987542221 11122221 4789999999999976432 33444445455664 999999
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q psy15351 83 RNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~ 101 (352)
+++ .|+++++++|.+.+
T Consensus 149 ~~~--~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 149 KED--LNVSEVFKYLAEKH 165 (168)
T ss_dssp TTT--BSSHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHH
Confidence 999 99999999987654
No 137
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.39 E-value=4.5e-07 Score=76.21 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+.. ......|.++.+... .+...+. ..+.++||||..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKK------FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS------CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC------CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 356899999999999999999998631 122233444433322 2222221 268899999954
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.39 E-value=1.3e-07 Score=82.43 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=45.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++... .....+.+.+|+|..............+.++||||...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHH----HHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC----CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 45689999999999999999995431 23456678889888765322211223588999999653
No 139
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.39 E-value=5.2e-07 Score=74.05 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=36.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|+|.+. . .....++++..... .+...+. -.+.++||||...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS-----C--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC-----c--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch
Confidence 3588999999999999999999963 2 11222333322222 2222221 2588999999653
No 140
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.39 E-value=2.9e-07 Score=75.95 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=35.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|+|.+.. ......|.++.+.........+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK------FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC------CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 4789999999999999999999632 11223333333322211122222 578999999654
No 141
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.39 E-value=6.2e-07 Score=76.17 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc----chHHHHHHHHhhcCCCCcEEEe
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK----HESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~~~~~~~v~~i 80 (352)
..+..+|++++|+|+.++.+..+ ..+...+. .+.|+++|+||+|+.+.. ..++..++.+..+.. .++.+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 167 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV--AYIEA 167 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS--CEEEC
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC--EEEEe
Confidence 46788999999999987633222 12222222 468999999999997531 123444444444543 48999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|++++++++.+.+..
T Consensus 168 Sa~~~--~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 168 SSVAK--IGLNEVFEKSVDCIFS 188 (194)
T ss_dssp BTTTT--BSHHHHHHHHHHHHHC
T ss_pred ecCCC--CCHHHHHHHHHHHHHh
Confidence 99999 9999999998876643
No 142
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.39 E-value=3.9e-07 Score=78.00 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=40.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
..++|+++|.+|||||||+|+|.+... .....+..|++.... .+.... ...+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSF----TPAFVSTVGIDFKVK-TIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCC----CSCCCCCCSEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeEEEE-EEEECCeEEEEEEEECCCch
Confidence 458999999999999999999997321 122334445554432 222221 2268999999974
No 143
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.39 E-value=5.7e-07 Score=76.38 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
...++|+++|.+|||||||+|+|.+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999999974
No 144
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.39 E-value=5.8e-07 Score=74.09 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=61.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+... ..+...+. ...|+++|+||+|+.+... .+...++....+. +++.+
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~ 148 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA---IFVET 148 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EEEEC
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC---EEEEE
Confidence 3456789999999999987643221 11222222 4578999999999986433 2233333334454 48999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.+.
T Consensus 149 Sa~~~--~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNA--ININELFIEISRRIP 168 (170)
T ss_dssp BTTTT--BSHHHHHHHHHHHCC
T ss_pred eCCCC--cCHHHHHHHHHHHHh
Confidence 99999 999999999876553
No 145
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.38 E-value=1.6e-07 Score=95.83 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=32.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCc
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGV 207 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~ 207 (352)
...++|+++|.||+|||||+|+|.+ .....++..|+|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg-----~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIG-----ENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHT-----SSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCCCCc
Confidence 3579999999999999999999998 456677888887
No 146
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.38 E-value=6.1e-07 Score=76.85 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=60.0
Q ss_pred HHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc------------
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ------------ 71 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~------------ 71 (352)
..+..+|++++|+|+.++.+.. ...+.++++ .+.|+++|+||+|+......++..+++....
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 167 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccccc
Confidence 4578999999999998763221 122333332 4689999999999976433444444443211
Q ss_pred --CCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351 72 --SHISEVIFTNCRNPNCKGVQKILPTLQHI 100 (352)
Q Consensus 72 --~~~~~v~~iSa~~~~~~gi~~L~~~i~~~ 100 (352)
....+++.+||+++ .|+++++++|.+.
T Consensus 168 ~~~~~~~~~~~SA~~g--~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 168 LNARPLEVFMCSVLKR--QGYGEGFRWMAQY 196 (198)
T ss_dssp CCSCCEEEEECBTTTT--BSHHHHHHHHHTT
T ss_pred ccCceEEEEEEECCCC--CCHHHHHHHHHHh
Confidence 11125889999999 9999999998654
No 147
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=75.34 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=64.1
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .++..++....+.. +++.+
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~--~~~~~ 172 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDIL--CAIET 172 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCS--EEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCC--EEEEE
Confidence 4567889999999999987533211 11222222 4679999999999976322 34444555555652 48999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 173 SA~~g--~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 173 SAKDS--SNVEEAFLRVATELIM 193 (201)
T ss_dssp BTTTT--BSHHHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998876654
No 148
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=9.3e-07 Score=74.94 Aligned_cols=91 Identities=10% Similarity=-0.009 Sum_probs=62.3
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+... ......+....+.. ++.+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 165 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD---FFEA 165 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe---EEEE
Confidence 4457889999999999986532211 11222222 3689999999999975432 23333333444654 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 166 Sa~~~--~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 166 SAKEN--ISVRQAFERLVDAICD 186 (191)
T ss_dssp BTTTT--BSHHHHHHHHHHHHHH
T ss_pred ECCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998876543
No 149
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.38 E-value=3.9e-07 Score=75.87 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=39.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|+|.+.. ......|.++.+.........+ ..+.++||||...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDS------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSC------CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC------CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 45899999999999999999998621 1222344444443322222222 2588999999643
No 150
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.38 E-value=8.9e-07 Score=75.05 Aligned_cols=89 Identities=16% Similarity=0.055 Sum_probs=61.6
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+..+ ..+..+.. .+.|+++|+||+|+.+... .++..++..+.+.. ++.+|
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 164 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI---FMETS 164 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE---EEEEe
Confidence 456789999999999987543222 11112211 3789999999999975432 23344444455654 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++++++|.+.+.
T Consensus 165 a~~~--~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 165 AKTA--CNVEEAFINTAKEIY 183 (191)
T ss_dssp TTTC--TTHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999876554
No 151
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.38 E-value=1.8e-06 Score=70.56 Aligned_cols=89 Identities=21% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|.+++|+|+.++.+... ..+. .+.. .+.|+++|+||+|+.+... .....++.++.+.+ ++.+|
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S 145 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP---YIETS 145 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC---EEEEC
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe---EEEec
Confidence 346788999999999986532211 1111 1111 2789999999999987433 23334444445665 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++++++|.+.+.
T Consensus 146 a~~~--~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 146 AKTR--QGVEDAFYTLVREIR 164 (166)
T ss_dssp TTTC--TTHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999876653
No 152
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.38 E-value=2e-06 Score=80.78 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=62.0
Q ss_pred hccCEEEEEEcCCCCCCCc-C--HHHHHHHh---CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCC
Q psy15351 13 KNVDIVIEVHDSRMPFTGR-N--HLLQQSVQ---NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPN 86 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~-~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~ 86 (352)
..+|.+++|+|+..+.... . ..+...+. .++|+++|+||+|+.+.....+..+++...+.+ ++.+||+++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~iSA~~g- 320 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN---PIKISALKG- 320 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC---CEECBTTTT-
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCC---eEEEeCCCC-
Confidence 4699999999987653211 1 11222222 379999999999998765555555555555555 899999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy15351 87 CKGVQKILPTLQHISDN 103 (352)
Q Consensus 87 ~~gi~~L~~~i~~~~~~ 103 (352)
+|+++++++|.+.+..
T Consensus 321 -~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 321 -TGIDLVKEEIIKTLRP 336 (357)
T ss_dssp -BTHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHH
Confidence 9999999999877654
No 153
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.38 E-value=5.5e-07 Score=75.04 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=41.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|+|.+. ......++++...........+ ..+.++||||....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS-------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS-------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC-------cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh
Confidence 35689999999999999999999963 1233444554443222222222 25788999997653
No 154
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=9.7e-07 Score=72.80 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=61.8
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh-----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ-----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVI 78 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~ 78 (352)
....+..+|++++|+|+.++.+... ..+. .+.. .+.|+++|+||+|+.+.... ....++....+.. ++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~ 144 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA---FM 144 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE---EE
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe---EE
Confidence 3456788999999999987533221 1222 2221 36899999999999765332 2223333344554 89
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
.+||+++ .|+++++++|.+.+..
T Consensus 145 ~~Sa~~~--~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 145 ETSAKLN--HNVKELFQELLNLEKR 167 (172)
T ss_dssp ECBTTTT--BSHHHHHHHHHHTCCS
T ss_pred EecCCCC--cCHHHHHHHHHHHHhh
Confidence 9999999 9999999999876653
No 155
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=4e-07 Score=78.34 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=38.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+.. ......|.++.+... .+...+. ..+.++||||...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK------FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC------CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC------CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999999632 122233443333322 2222221 2589999999654
No 156
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.37 E-value=8.4e-07 Score=76.74 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh--------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ--------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEV 77 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~--------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v 77 (352)
....+..+|++|+|+|+.++.+. ..+..++. .+.|+++|+||+|+.+... .....++....+.. +
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~ 175 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP---Y 175 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---E
T ss_pred HHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc---E
Confidence 45678999999999999875322 22333332 2578999999999976432 23334444445665 9
Q ss_pred EEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 78 IFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 78 ~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.+||+++ .|+++++++|.+.+..
T Consensus 176 ~~~Sa~~g--~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 176 FETSAATG--QNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEBTTTT--BTHHHHHHHHHHHHHH
T ss_pred EEEECCCC--CCHHHHHHHHHHHHHH
Confidence 99999999 9999999998876543
No 157
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.37 E-value=9.6e-07 Score=72.86 Aligned_cols=87 Identities=16% Similarity=0.047 Sum_probs=60.4
Q ss_pred HhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
.+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++.+..+.. ++.+||
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa 148 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK---HIETSA 148 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECBT
T ss_pred hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc---EEEecC
Confidence 4677999999999987532221 22223332 2789999999999975432 23333444444554 899999
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy15351 83 RNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~ 102 (352)
+++ .|++++++++.+.+.
T Consensus 149 ~~~--~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 149 ALH--HNTRELFEGAVRQIR 166 (169)
T ss_dssp TTT--BSHHHHHHHHHHHHH
T ss_pred ccC--CCHHHHHHHHHHHHH
Confidence 999 999999999877654
No 158
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.37 E-value=3.8e-07 Score=76.22 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=38.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+... .....+..|++.... .+.... ...+.++||||..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQF----VEFQESTIGAAFFSQ-TLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC----TTTSCCCSCCSEEEE-EEEETTEEEEEEEEECCCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC----CCcCCCCceeEEEEE-EEEECCEEEEEEEEeCCCCh
Confidence 3568999999999999999999996321 111122333333322 222222 2268999999954
No 159
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.37 E-value=2.9e-07 Score=78.70 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=36.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+.. ....+.+..|++.... .+.... ...+.++||||...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE----FRENISATLGVDFQMK-TLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC----CC----------CEEE-EEEETTEEEEEEEEECTTCTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC----CCccCCCCccceeEEE-EEEECCEEEEEEEEECCCCcc
Confidence 457999999999999999999998632 1233445555544332 222222 12588999999653
No 160
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.37 E-value=7.5e-07 Score=73.30 Aligned_cols=88 Identities=18% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++....+. +++.+|
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S 144 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC---KFIETS 144 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC---EEEECB
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC---cEEEec
Confidence 45789999999999987632211 11222222 3689999999999986543 2222333333454 489999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|++++++++.+.+.
T Consensus 145 a~~~--~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 145 AALH--HNVQALFEGVVRQIR 163 (166)
T ss_dssp GGGT--BSHHHHHHHHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999887654
No 161
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=5.4e-07 Score=76.10 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=40.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|+|.+. ....+.++.|.+... +.. .+..+.++||||...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN-----EVVHTSPTIGSNVEE---IVI-NNTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT-----SCEEEECCSCSSCEE---EEE-TTEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC-----CCCcCcCCCccceEE---EEE-CCEEEEEEECCCCHh
Confidence 35689999999999999999999962 333455555544332 222 345789999999854
No 162
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=3.3e-07 Score=77.61 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=40.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|+|.+... .....+..|++.... .+.... ...+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTF----DPELAATIGVDFKVK-TISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC----CTTCCCCCSEEEEEE-EEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC----CccCCCccceEEEEE-EEEECCeEEEEEEEeCCCchh
Confidence 468999999999999999999986321 123334445554432 222222 23588999999654
No 163
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.36 E-value=7.1e-07 Score=74.85 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHH----h---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSV----Q---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l----~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
..+..+|++++|+|+.++.+. ..+..++ . .+.|+++|+||+|+.+... .++..++.++.+.. ++.+
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~ 150 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK---FMET 150 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred HHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe---EEEE
Confidence 357889999999999875322 1222222 1 3679999999999986432 23444444455654 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 151 Sa~~~--~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 151 SAKAN--INVENAFFTLARDIKA 171 (183)
T ss_dssp CC-----CCHHHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998776543
No 164
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.36 E-value=5.2e-07 Score=76.69 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=40.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCcee--cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP--VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~--~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
....+|+++|.+|||||||+|+|.+. .... ..++.|.+.... ...+..+.++||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~-----~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA-----QSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC-----C----CCCCCSSEEEEEE----EETTEEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC-----CCcccccccccceeEEEE----EeCCEEEEEEECCCCHh
Confidence 46789999999999999999999973 2222 255566444322 23344689999999753
No 165
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.36 E-value=6.6e-07 Score=76.50 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=39.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+. . .....++++..... .+...+. -.+.++||||...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS-----C--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 35689999999999999999999863 1 12233444333222 2222221 1588999999654
No 166
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.36 E-value=9.6e-07 Score=74.84 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=62.2
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++....+.. ++.+
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 167 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL---FLET 167 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEE
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE---EEEE
Confidence 3456789999999999987543221 11222222 3678999999999976432 23444444445554 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.+.
T Consensus 168 Sa~~~--~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 168 SALDS--TNVELAFETVLKEIF 187 (193)
T ss_dssp CTTTC--TTHHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHHH
Confidence 99999 999999999876554
No 167
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.36 E-value=1.1e-06 Score=75.39 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=61.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
..+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .+...++....+.+ ++.+||
T Consensus 76 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa 152 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP---FLETSA 152 (206)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC---EEECCT
T ss_pred HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe---EEEEeC
Confidence 45788999999999987543211 11111111 3578999999999986432 23334444445665 999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|+++++++|.+.+..
T Consensus 153 ~~g--~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 153 LDS--TNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTC--TTHHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHH
Confidence 999 9999999999876654
No 168
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.36 E-value=9.8e-07 Score=74.10 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=63.2
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++....+.. ++.+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 152 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM---FLET 152 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEe
Confidence 4557889999999999987543222 11111111 4689999999999975432 23444555555654 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|++++++++.+.+..
T Consensus 153 Sa~~~--~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 153 SALTG--ENVEEAFVQCARKILN 173 (186)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHH
T ss_pred cCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998766543
No 169
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.36 E-value=1.1e-06 Score=75.21 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=62.0
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++|+|+|+.++.+... ..+...+. .+.|+++|+||+|+.+... .....++....+.. ++.+
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE---FFEA 150 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE---EEEC
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe---EEEE
Confidence 4557789999999999987532211 11111121 3689999999999986432 23333444444654 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.+.
T Consensus 151 Sa~~~--~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 151 SAKDN--INVKQTFERLVDVIC 170 (203)
T ss_dssp BTTTT--BSSHHHHHHHHHHHH
T ss_pred ECCCC--CCHHHHHHHHHHHHH
Confidence 99999 999999999876654
No 170
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.35 E-value=1.4e-06 Score=73.27 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=62.2
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchH-HHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHES-LIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~-~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+..... ...++....+.+ ++.+|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S 146 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP---FIETS 146 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC---EEECC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe---EEEEe
Confidence 345778999999999987532211 11112221 368999999999998654322 333333444665 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|++++++++.+.+..
T Consensus 147 a~~g--~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 147 AKTR--QGVDDAFYTLVREIRK 166 (189)
T ss_dssp TTTC--TTHHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999876654
No 171
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.35 E-value=1.3e-06 Score=75.02 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=61.8
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+..... .....++....+.+ ++.+||
T Consensus 87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa 163 (213)
T 3cph_A 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP---FIESSA 163 (213)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC---EEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE---EEEEeC
Confidence 456789999999999987543211 11112211 3689999999999954332 23333344445665 999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|+++++++|.+.+.+
T Consensus 164 ~~~--~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 164 KND--DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTT--BSSHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHH
Confidence 999 9999999998876654
No 172
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=8.7e-07 Score=73.08 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=36.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|+|.+.... .......+.+++.. +.... ...+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~---~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR---ESYIPTVEDTYRQV---ISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC---SSCCCCSCEEEEEE---EEETTEEEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCccccEEEE---EEECCEEEEEEEEECCCchh
Confidence 578999999999999999999963211 01111122222221 21211 12578999999754
No 173
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.34 E-value=3.9e-07 Score=76.40 Aligned_cols=59 Identities=19% Similarity=0.377 Sum_probs=40.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|++.+ .......++.|.+... +.. .+..+.++||||...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~-----~~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI-----GEVVTTKPTIGFNVET---LSY-KNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC-----SEEEEECSSTTCCEEE---EEE-TTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----CCcCccCCcCccceEE---EEE-CCEEEEEEECCCCHh
Confidence 3579999999999999999999986 3345566666655432 222 345689999999865
No 174
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.34 E-value=1e-06 Score=73.45 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
...+..+|++++|+|+.++.+... ..+..+++ .+.|+++|+||+|+.+... .....++....+.. ++.+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~ 151 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA---YFEA 151 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEC
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe---EEEe
Confidence 345788999999999987532211 12222222 4789999999999976433 23333333344554 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 152 Sa~~~--~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 152 SAKLR--LNVDEAFEQLVRAVRK 172 (181)
T ss_dssp BTTTT--BSHHHHHHHHHHHHHH
T ss_pred cCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999999876654
No 175
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.34 E-value=6.5e-07 Score=73.88 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=59.9
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHH---Hh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQS---VQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~---l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
.+..+|++++|+|+.++.+.. .+..+ +. .+.|+++|+||+|+.++.. .++..++.+..+.. ++.+|
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~S 149 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK---HYHTS 149 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEEB
T ss_pred HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe---EEEec
Confidence 567899999999998753221 12222 11 4689999999999976432 23444444445554 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++++++|.+.+.
T Consensus 150 a~~~--~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 150 AKQN--KGIEELFLDLCKRMI 168 (170)
T ss_dssp TTTT--BSHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHh
Confidence 9999 999999999876553
No 176
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.34 E-value=7.3e-07 Score=76.33 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+.. ......|.++.+.........+ ..+.++||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC------CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC------CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 356899999999999999999998632 1122233333333222222222 2589999999643
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.3e-07 Score=77.00 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=36.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|+|.+... .....+..|++|.+. ....+.++||||....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~---~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC---C------------CC-------CCTTCSEEEETTCCBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CcccccCCCceeeee-------cCCeEEEEECCCCchH
Confidence 3568999999999999999999997321 112223344444332 2346899999998754
No 178
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.3e-06 Score=75.18 Aligned_cols=91 Identities=21% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEe
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFT 80 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~i 80 (352)
....+..+|++++|+|++++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++....+.. ++.+
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~ 168 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY---YLET 168 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC---EEEC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE---EEEE
Confidence 4456789999999999987543221 11112211 3678999999999975432 23333444445665 8999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
||+++ .|+++++++|.+.+..
T Consensus 169 Sa~~g--~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 169 SAKES--DNVEKLFLDLACRLIS 189 (201)
T ss_dssp CTTTC--TTHHHHHHHHHHHHHH
T ss_pred eCCCC--CCHHHHHHHHHHHHHH
Confidence 99999 9999999998766543
No 179
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.3e-06 Score=74.16 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=60.1
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+.... .+...+. .+.|+++|+||+|+.+.. ..++..++.+..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 457889999999999876332111 1222222 378999999999998642 123333444444
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
+.. +++.+||+++ .|+++++++|.+.+
T Consensus 165 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~i 191 (194)
T 2atx_A 165 GAC--CYVECSALTQ--KGLKTVFDEAIIAI 191 (194)
T ss_dssp TCS--CEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred CCc--EEEEeeCCCC--CCHHHHHHHHHHHH
Confidence 542 4899999999 99999999887644
No 180
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.34 E-value=6.9e-07 Score=73.41 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP 234 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~ 234 (352)
.++|+++|.+|||||||+|++.+.. . ....+.++...........+ ..+.++||||....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~-----~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI-----F--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-----C--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-----C--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH
Confidence 4789999999999999999998631 1 11122222222111111222 25789999997643
No 181
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.33 E-value=7.9e-07 Score=74.42 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=39.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~ 234 (352)
+.++|+++|.+|||||||+|++.+. .......+..+.+. .......+. .+.++||||....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~----~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG----QFVDSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS----SCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC----CCCCCCCCCccccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence 4689999999999999999999952 22222333334333 222222232 4689999997653
No 182
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.33 E-value=5.3e-07 Score=76.63 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=59.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhc---------CCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ---------SHI 74 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~---------~~~ 74 (352)
..+..+|++++|+|++++.+... ..+..+++ .+.|+++|+||+|+......+++.+.+.... ...
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 165 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence 45689999999999987643211 22333332 4689999999999986443445544442211 011
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351 75 SEVIFTNCRNPNCKGVQKILPTLQH 99 (352)
Q Consensus 75 ~~v~~iSa~~~~~~gi~~L~~~i~~ 99 (352)
.+++.+||+++ .|+++++++|.+
T Consensus 166 ~~~~~~Sa~~g--~gi~~l~~~l~~ 188 (190)
T 1m2o_B 166 VEVFMCSVVMR--NGYLEAFQWLSQ 188 (190)
T ss_dssp EEEEECBTTTT--BSHHHHHHHHHT
T ss_pred EEEEEeECCcC--CCHHHHHHHHHh
Confidence 24889999999 999999998864
No 183
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.33 E-value=1e-06 Score=75.38 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=62.5
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++....+.. ++.+|
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 168 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM---FLETS 168 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEEEC
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE---EEEEe
Confidence 356789999999999987543222 11112211 4689999999999975432 23444555555654 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+..
T Consensus 169 A~~g--~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 169 ALTG--ENVEEAFLKCARTILN 188 (200)
T ss_dssp TTTC--TTHHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999998766543
No 184
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.33 E-value=4.6e-07 Score=77.06 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=37.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+.. ......+..|.+.... .+...+. -.+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~----~~~~~~~t~~~~~~~~-~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDT----FCEACKSTVGVDFKIK-TVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------CCTTEEEEEE-EEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC----CCcCCCCccceeEEEE-EEEECCeEEEEEEEeCCCcH
Confidence 456899999999999999999998631 1112233334333221 2222221 258899999954
No 185
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.33 E-value=4.7e-07 Score=77.55 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=35.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+.. ......|.++.+... .+...+. ..+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENK------FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC------CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 457999999999999999999999631 111222332222211 2222211 268999999953
No 186
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.33 E-value=8.4e-07 Score=79.35 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=56.6
Q ss_pred ccCEEEEEEcCCCC--CCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEEEeecCC
Q psy15351 14 NVDIVIEVHDSRMP--FTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVIFTNCRN 84 (352)
Q Consensus 14 ~aD~vl~VvDar~p--~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~~iSa~~ 84 (352)
++|++|+|+|++++ .+... ..+..+.+ .+.|+++|+||+|+.+...+++..++.... +.. ++.+||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~---~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ---VVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC---EEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe---EEEEECCC
Confidence 69999999999876 32211 11222211 468999999999997654444444444332 444 89999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q psy15351 85 PNCKGVQKILPTLQHIS 101 (352)
Q Consensus 85 ~~~~gi~~L~~~i~~~~ 101 (352)
+ .|+++++++|.+.+
T Consensus 239 g--~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 N--VNVDLAFSTLVQLI 253 (255)
T ss_dssp T--BSHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHh
Confidence 9 99999999987654
No 187
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.33 E-value=4.4e-07 Score=78.91 Aligned_cols=90 Identities=18% Similarity=0.061 Sum_probs=63.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNP 85 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~ 85 (352)
..+..+|++++|+|+.++.+... ..+..+.+ .+.|+++|+||+|+.+........++.+..+.. ++.+||+++
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~ 159 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ---YYDISAKSN 159 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE---EEECBGGGT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE---EEEEeCCCC
Confidence 45678999999999987543222 11112222 478999999999998654433333344445554 999999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q psy15351 86 NCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 86 ~~~gi~~L~~~i~~~~~~~ 104 (352)
.|+++++++|.+.+...
T Consensus 160 --~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 160 --YNFEKPFLWLARKLIGD 176 (221)
T ss_dssp --BTTTHHHHHHHHHHHTC
T ss_pred --CCHHHHHHHHHHHHHhC
Confidence 99999999998776543
No 188
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.33 E-value=5.8e-07 Score=77.31 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+.... .+..++.+..
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence 367899999999999876433221 2222232 37899999999999765421 2222333333
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHI 100 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~ 100 (352)
+.. +++.+||+++ .|++++++++.+.
T Consensus 177 ~~~--~~~~~SA~~g--~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 177 GAV--KYLECSALTQ--RGLKTVFDEAIRA 202 (204)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHT
T ss_pred CCc--EEEEeeCCCC--CCHHHHHHHHHHH
Confidence 332 5899999999 9999999988753
No 189
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.33 E-value=1.3e-06 Score=74.59 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=59.7
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh----CCCCEEEEEEcccCCCc------c-c-hHHHHHHHHhhcCCC
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ----NIRPMVLVLNKRDLINS------K-H-ESLIEEKVRKEQSHI 74 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~----~~k~~ilVlNK~Dl~~~------~-~-~~~~~~~~~~~~~~~ 74 (352)
....+..+|++|+|+|+.++.+..+ ..+...+. .+.|+++|+||+|+.+. . . .....++....+..
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~- 172 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL- 172 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-
Confidence 4556789999999999987643322 11112222 36899999999999631 1 1 12223333344554
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 75 SEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++.+||+++ .|+++++++|.+.+.
T Consensus 173 --~~~~SA~~g--~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 173 --FCETSAKDG--SNIVEAVLHLAREVK 196 (199)
T ss_dssp --EEECCTTTC--TTHHHHHHHHHHHHT
T ss_pred --EEEeeCCCC--CCHHHHHHHHHHHHH
Confidence 899999999 999999999876553
No 190
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.32 E-value=6.8e-07 Score=75.95 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=40.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|++.+. ....+.++.+.+... +.. ++..+.++||||...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEE---LAI-GNIKFTTFDLGGHIQ 79 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS-----CCCCCCCCCSCEEEE---EEE-TTEEEEEEECCCSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-----CCCccccCCCCCeEE---EEE-CCEEEEEEECCCCHH
Confidence 4579999999999999999999973 333445555655332 222 345789999999754
No 191
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.32 E-value=1.6e-06 Score=71.92 Aligned_cols=89 Identities=16% Similarity=0.034 Sum_probs=59.6
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+... ..+. .+.. .+.|+++|+||+|+.+... ..+...+....+.. ++.+|
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 149 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK---FIETS 149 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE---EEECB
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe---EEEEe
Confidence 45678999999999987532211 1111 2222 2789999999999986532 22333333344554 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+..
T Consensus 150 a~~g--~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQ--HNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTT--BSHHHHHHHHHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999876643
No 192
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.32 E-value=8.7e-07 Score=74.26 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=38.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|+|.+. . .....++++..... .+..... -.+.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD-----E--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS-----C--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC-----C--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence 4689999999999999999999963 2 12233334333222 2222221 1588999999653
No 193
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.32 E-value=6.1e-07 Score=75.25 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+... ..+..++.+..
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 357889999999999875332221 1222222 3789999999999976421 12233333334
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
+.. +++.+||+++ .|++++++++.+.+.+.
T Consensus 152 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 152 GAV--KYLECSALTQ--RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHHHSCC
T ss_pred CCc--EEEEecCCCc--cCHHHHHHHHHHHHhcc
Confidence 432 4899999999 99999999998776543
No 194
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.32 E-value=3.3e-07 Score=79.44 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=43.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|+|.+. ..........+++..... +....+ -.+.++||||....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~----~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG----RFEKNYNATVGAVNHPVT-FLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC----STTCEEETTTTEEEEEEE-EEBTTSCEEEEEEEEECSGGGT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC----CCCCCCCCccceeeEEEE-EEeCCCcEEEEEEEecCCchhh
Confidence 35689999999999999999999863 222344556666554432 222222 24889999997643
No 195
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.32 E-value=6.2e-07 Score=75.84 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=38.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|||||||+|+|.+... .....+..|.+.... .+...+ ...+.++||||..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRF----PDRTEATIGVDFRER-AVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC----CSSCCCCCSCCEEEE-EEEETTEEEEEEEEECCCSH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCCcceEEEEE-EEEECCEEEEEEEEECCCch
Confidence 3568999999999999999999986321 112223333332221 222222 1268999999953
No 196
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.32 E-value=1.6e-06 Score=74.10 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++....+.. ++.
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~ 155 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN---YVE 155 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe---EEE
Confidence 3456788999999999987532211 11112222 3789999999999976432 34555555555654 999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+||+++ .|+++++++|.+.+..
T Consensus 156 ~Sa~~g--~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 156 TSAKTR--ANVDKVFFDLMREIRA 177 (206)
T ss_dssp ECTTTC--TTHHHHHHHHHHHHHH
T ss_pred EeCCCC--CCHHHHHHHHHHHHHH
Confidence 999999 9999999998776543
No 197
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.32 E-value=3.4e-07 Score=87.90 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=67.1
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHH-hhcCCCCcEEEeec
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVR-KEQSHISEVIFTNC 82 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-~~~~~~~~v~~iSa 82 (352)
+++++..+..+|++|+|+|+ ........+...++ .+.|+++|+||+|+.+.... +..+.+. ..+.+ ++.+||
T Consensus 104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~---v~~vSA 177 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAK---VLLVSA 177 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCC---CCCCSS
T ss_pred HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCC---EEEEEC
Confidence 45677889999999999999 23333334444444 68999999999999877654 2333332 22444 889999
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc
Q psy15351 83 RNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
+++ .|+++++++|.+.++..
T Consensus 178 ktg--~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 178 LQK--KGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCT--TSTTTHHHHHHHHSCCC
T ss_pred CCC--CCHHHHHHHHHHhhhhh
Confidence 999 99999999999888643
No 198
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.32 E-value=1.2e-06 Score=74.88 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=59.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+... ..+..++.+..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 35788999999999986532211 12222232 3789999999999987532 12233333333
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
+.. +++.+||+++ .|+++++++|.+.+
T Consensus 172 ~~~--~~~~~SA~~g--~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 SAF--GYLECSAKTK--EGVREVFEMATRAG 198 (201)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred CCc--EEEEeeCCCC--CCHHHHHHHHHHHH
Confidence 442 4899999999 99999999987643
No 199
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.32 E-value=7.6e-07 Score=74.44 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=59.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc------------hHHHHHHHHhhcC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH------------ESLIEEKVRKEQS 72 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~~ 72 (352)
..+..+|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+... ..+..++.+..+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 457789999999999875432211 1222222 3789999999999976432 1222333333454
Q ss_pred CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 73 HISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
. +++.+||+++ .|++++++++.+.+
T Consensus 155 ~--~~~~~Sa~~~--~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 155 P--AYIECSSKSQ--ENVKGVFDAAIRVV 179 (182)
T ss_dssp S--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred C--EEEEEECCCC--CCHHHHHHHHHHHH
Confidence 2 4899999999 99999999987654
No 200
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.31 E-value=7.3e-07 Score=73.61 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=32.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISLP 234 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~~ 234 (352)
++|+++|.+|||||||+|++.+. ....... +.+|.+... .+...+ .-.+.++||||....
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL-----QGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhc-----cCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 68999999999999999999862 1111111 222222222 222222 125779999998653
No 201
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=1.5e-06 Score=73.82 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC-HHHHHHH-h-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSV-Q-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l-~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+... ..+...+ . .+.|+++|+||+|+.+... .....++....+.. ++.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 149 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA---FME 149 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE---EEE
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCe---EEE
Confidence 3456788999999999986533221 1122211 1 2679999999999986443 23333344444554 899
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+||+++ .|+++++++|.+.+..
T Consensus 150 ~Sa~~~--~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 150 TSAKMN--YNVKELFQELLTLETR 171 (199)
T ss_dssp CBTTTT--BSHHHHHHHHHHHCSS
T ss_pred EecCCC--CCHHHHHHHHHHHHhh
Confidence 999999 9999999999877654
No 202
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.31 E-value=8.7e-07 Score=76.17 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=38.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCc--EEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~--~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|++.+.. ..+..++++.+.........+.. +.++||||...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC-------CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC-------CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 467999999999999999999998521 22334445444332222233333 45999999753
No 203
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.31 E-value=8.6e-07 Score=75.67 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=37.4
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCCC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISLP 234 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~~ 234 (352)
....++|+++|.+|||||||+|++.+. . .....++|+...........+. .+.++||||....
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN-----G--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC-----C--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence 356799999999999999999999963 2 2233444444332222222332 4679999998653
No 204
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.31 E-value=1.2e-06 Score=73.92 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...++|+++|.+|||||||+|+|.+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999999996
No 205
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.31 E-value=6.5e-07 Score=75.66 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=40.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|++.+ .......++.|.+... +.. .+..+.++||||...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~-----~~~~~~~~t~~~~~~~---~~~-~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL-----GDVVTTVPTVGVNLET---LQY-KNISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC-----SCCEEECSSTTCCEEE---EEE-TTEEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHc-----CCCCCcCCCCceEEEE---EEE-CCEEEEEEECCCCHh
Confidence 568999999999999999999986 2333344444543322 222 345789999999754
No 206
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.30 E-value=8e-07 Score=72.97 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=36.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
++|+++|.+|||||||+|++.+.. .....++.|... ......+..+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-----~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNV----ETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-----SSCCCCCSSCCE----EEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-----cCcccCcCceeE----EEEEECCEEEEEEEcCCCh
Confidence 479999999999999999998632 112222223221 1112234579999999974
No 207
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.30 E-value=9.3e-07 Score=74.67 Aligned_cols=60 Identities=25% Similarity=0.270 Sum_probs=36.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|+|.+. . .....++++...........+. .+.++||||...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN-----H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS-----S--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC-----C--CccccCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 4589999999999999999999863 1 1122333433322211122222 488999999653
No 208
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.30 E-value=6.5e-07 Score=76.83 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=39.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~~ 234 (352)
..++|+++|.+|||||||+|+|.+.. ......|.++.+... .+...+. -.+.++||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT------YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC------CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC------CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH
Confidence 46899999999999999999999632 122223333332221 2222221 25899999997543
No 209
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.30 E-value=1.2e-06 Score=73.43 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=37.8
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
..+.++|+++|.+|||||||+|+|.+.. .....+.++...........+. .+.++||||...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKI-------FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC-------CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence 3467999999999999999999999621 1112222222221222222333 355699999654
No 210
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.29 E-value=2.4e-06 Score=85.42 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=70.0
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHH-HHhCCCCEEEEEEcccCCCccchHHHHHHHHhh-cCCCCcEEEee
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQ-SVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE-QSHISEVIFTN 81 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~-~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~-~~~~~~v~~iS 81 (352)
....+...+..+|.+|+|+|+.++.......... ....+.|+++|+||+|+.+.+ .....+.+.+. +....+++++|
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~vi~vS 164 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEEAILAS 164 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGGCEECB
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcccEEEEE
Confidence 3445677889999999999999876543332222 222688999999999998654 23333444332 44333589999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 82 CRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
|+++ .|+++|++++.+.++..
T Consensus 165 Aktg--~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 165 AKEG--IGIEEILEAIVNRIPPP 185 (600)
T ss_dssp TTTT--BSHHHHHHHHHHHSCCC
T ss_pred eecC--CCchHHHHHHHHhcccc
Confidence 9999 99999999998887653
No 211
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.29 E-value=2.2e-06 Score=72.35 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=61.5
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC-HHHHHHHh-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCCCcEEEee
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQ-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~~~l~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~~~v~~iS 81 (352)
...+..+|++++|+|+.++.+..+ ..+...+. .+.|+++|+||+|+.+... ..+..++.++.+.+ ++.+|
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~S 163 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP---FIETS 163 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC---EEECC
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe---EEEEe
Confidence 456789999999999987642211 11111111 3789999999999986432 33444444455665 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|+++++++|.+.+..
T Consensus 164 a~~~--~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 164 AKTR--QGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TTTC--TTHHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999876654
No 212
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.29 E-value=6.3e-07 Score=83.69 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=61.9
Q ss_pred HHHHHHhhccCEEEEEEcCCCC-----CCCcCHHHHHHHh-----CCCCEEEEEEcccCCCccc-hHHHHHHHHhhcCCC
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMP-----FTGRNHLLQQSVQ-----NIRPMVLVLNKRDLINSKH-ESLIEEKVRKEQSHI 74 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p-----~~~~~~~l~~~l~-----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ 74 (352)
.++.+.++++|++|+|+|+.+. +......+.++.. ..+|+++|+||+|+.+... .+++.+.+.. ..
T Consensus 228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~-- 304 (342)
T 1lnz_A 228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DY-- 304 (342)
T ss_dssp HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CC--
T ss_pred HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CC--
Confidence 4566778899999999999652 1111111112211 2689999999999986532 2222222210 12
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
+++.+||+++ +|+++|+++|.+.+.+.
T Consensus 305 -~v~~iSA~tg--~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 305 -PVFPISAVTR--EGLRELLFEVANQLENT 331 (342)
T ss_dssp -CBCCCSSCCS--STTHHHHHHHHHHHTSC
T ss_pred -CEEEEECCCC--cCHHHHHHHHHHHHhhC
Confidence 4889999999 99999999999887654
No 213
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=2.2e-06 Score=72.90 Aligned_cols=90 Identities=17% Similarity=0.033 Sum_probs=62.0
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHH---h-CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSV---Q-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l---~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++++|+|+.++.+..+ ..+..+. . .+.|+++|+||+|+.+... ..+..++.++.+.. ++.
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~ 168 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA---FYE 168 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE---EEE
T ss_pred hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCe---EEE
Confidence 3456788999999999987543222 1122221 1 4789999999999976432 23334444444554 899
Q ss_pred eecCCCCCC-CHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCK-GVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~-gi~~L~~~i~~~~~ 102 (352)
+||+++ . |+++++++|.+.+.
T Consensus 169 ~Sa~~g--~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 169 CSACTG--EGNITEIFYELCREVR 190 (196)
T ss_dssp CCTTTC--TTCHHHHHHHHHHHHH
T ss_pred ECCCcC--CcCHHHHHHHHHHHHH
Confidence 999999 9 99999999876654
No 214
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.29 E-value=3.5e-06 Score=69.96 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=60.9
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHH---HHh----CCCCEEEEEEcccCCCccc-hHHHHHHHH-hhcCCCCc
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQ---SVQ----NIRPMVLVLNKRDLINSKH-ESLIEEKVR-KEQSHISE 76 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~---~l~----~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~-~~~~~~~~ 76 (352)
....+..+|++++|+|+.++.+... ..+.. ... .+.|+++|+||+|+..... .++..++.+ ..+. +
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 149 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY---P 149 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCC---C
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCc---e
Confidence 3456788999999999987643222 11111 111 3579999999999974332 334444443 2234 4
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++.+||+++ .|++++++++.+.+.
T Consensus 150 ~~~~Sa~~~--~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 150 YFETSAKDA--TNVAAAFEEAVRRVL 173 (177)
T ss_dssp EEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred EEEEeCCCC--CCHHHHHHHHHHHHH
Confidence 999999999 999999999877654
No 215
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.28 E-value=6.9e-07 Score=75.75 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=38.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+... .....+..|.+.... .+...+ .-.+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGAR-MVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCC----CC-----CCSSEEEE-EEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCcccceeEEE-EEEECCEEEEEEEEECCCchh
Confidence 4578999999999999999999996321 111222333333221 222221 12588999999654
No 216
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.28 E-value=5.5e-07 Score=76.97 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=38.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+. .......|++|.+.........+. .+.++||||...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGL------QGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCE------ECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhc------cCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 45689999999999999999999742 112223444444332222122232 467889999853
No 217
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.28 E-value=2.3e-06 Score=73.13 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=60.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc-hHHHHHHHH-hhcCCCCcEE
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH-ESLIEEKVR-KEQSHISEVI 78 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~-~~~~~~~~v~ 78 (352)
..+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++.. ..+.. ++
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 152 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP---YF 152 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC---EE
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce---EE
Confidence 35678999999999987643222 11222221 2679999999999985433 233334433 23444 99
Q ss_pred EeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 79 FTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
.+||+++ .|+++++++|.+.+..
T Consensus 153 ~~Sa~~g--~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 153 ETSAKEA--INVEQAFQTIARNALK 175 (207)
T ss_dssp ECBTTTT--BSHHHHHHHHHHHHHH
T ss_pred EEeCCCC--CCHHHHHHHHHHHHHH
Confidence 9999999 9999999999876654
No 218
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.28 E-value=8.2e-07 Score=85.83 Aligned_cols=67 Identities=25% Similarity=0.243 Sum_probs=45.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCC--CCCC-----------------------CceecCCCCCceeEeeeeEEecCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKKG-----------------------KAVPVGPKAGVTRSVMSQVKISEK 220 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~~ 220 (352)
...++|+++|.+|+|||||+|+|.... +... ........+|+|.+.........+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456899999999999999999996421 0000 001122347889887654444556
Q ss_pred CcEEEEeCCCCC
Q psy15351 221 PLIYILDTPGIS 232 (352)
Q Consensus 221 ~~~~l~DtPGi~ 232 (352)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 689999999964
No 219
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.28 E-value=1.6e-06 Score=80.50 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=64.0
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcCC--CCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSH--ISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~--~~~v~~i 80 (352)
...+..+|++|+|+|+.++.+... ..+..++. .+.|+++|+||+|+.+.....++.+.+...... ..+++.+
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEE
Confidence 456789999999999987543221 23333333 378999999999998766555555544222111 1148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhh
Q psy15351 81 NCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~ 102 (352)
||+++ .|+++++++|.+.+.
T Consensus 307 SAk~g--~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 307 CATSG--DGLYEGLDWLSNQLR 326 (329)
T ss_dssp BTTTT--BTHHHHHHHHHHHHT
T ss_pred ECCCC--cCHHHHHHHHHHHHH
Confidence 99999 999999999987664
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.28 E-value=6.5e-07 Score=76.64 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=37.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|++.+. ......++.|.+... +.. ++..+.++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~-----~~~~~~~t~~~~~~~---~~~-~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD-----RLGQHVPTLHPTSEE---LTI-AGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEE---EEE-TTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC-----CCCccCCCCCceeEE---EEE-CCEEEEEEECCCcHh
Confidence 4578999999999999999999863 333344555554322 222 335789999999654
No 221
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.7e-07 Score=79.51 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=40.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEec-CCCcEEEEeCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKIS-EKPLIYILDTPGI 231 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~~l~DtPGi 231 (352)
...++|+++|.+|||||||+|+|.+... .....+..|++..... +... ....+.++||||.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTF----TPAFVSTVGIDFKVKT-VYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTT----CCCEEEEETTTEEEEE-EEETTTTEEEEEECHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCC----CcccCCCeeeEEEEEE-EEECCEEEEEEEEeCCCh
Confidence 4679999999999999999999996321 1222233454444322 2222 2235899999993
No 222
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.27 E-value=6.3e-07 Score=90.09 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=46.6
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhCCCCCCCC---------ceecC----------------CCCCceeEeeeeEEecC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRSSHMKKGK---------AVPVG----------------PKAGVTRSVMSQVKISE 219 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~---------~~~~~----------------~~pg~T~~~~~~~~~~~ 219 (352)
..+.++|+++|.+|+|||||+|+|++....-.. ....+ ..+|+|.+.........
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356799999999999999999999863110000 00000 13788888765444445
Q ss_pred CCcEEEEeCCCCCC
Q psy15351 220 KPLIYILDTPGISL 233 (352)
Q Consensus 220 ~~~~~l~DtPGi~~ 233 (352)
+..+.|+||||...
T Consensus 244 ~~~~~iiDTPG~e~ 257 (611)
T 3izq_1 244 RANFTIVDAPGHRD 257 (611)
T ss_dssp SCEEEEEECCSSSC
T ss_pred CceEEEEECCCCcc
Confidence 66899999999743
No 223
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.27 E-value=3.3e-07 Score=76.93 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=24.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|++.+. .......|.++.+.........+ ..+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED------AFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC------CCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 4689999999999999999999852 12222334444443321111222 3588999999643
No 224
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.1e-06 Score=75.62 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=38.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+.. ......|..+.+... .+...+. -.+.++||||..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL------FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS------CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 356899999999999999999998631 122222333333222 2222221 258899999953
No 225
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.26 E-value=9.4e-07 Score=74.77 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=39.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|+|.+... ......++.|.+.. .+ ...+..+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~t~~~~~~---~~-~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNA---QSQNILPTIGFSIE---KF-KSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGG---CCSSCCCCSSEEEE---EE-ECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC---CCCCcCCccceeEE---EE-EECCEEEEEEECCCCHH
Confidence 4579999999999999999999986310 11223333343322 22 22345799999999654
No 226
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.26 E-value=9.4e-07 Score=72.24 Aligned_cols=59 Identities=32% Similarity=0.373 Sum_probs=36.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|++.+... ....++++..... .+...+. ..+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF-------VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-------CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC-------ccccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 47899999999999999999986311 1122223222211 2222221 2478899999754
No 227
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.26 E-value=7.6e-07 Score=74.26 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=34.8
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+... .....+..|.+.... .+...++ ..+.++||||..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKY----SQQYKATIGADFLTK-EVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCC----CTTC---CCCSCEEE-EECCSSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcC----CcccCCccceEEEEE-EEEEcCCcEEEEEEEECCCCh
Confidence 3568999999999999999999986321 111222222222211 2222212 257899999954
No 228
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.26 E-value=9.7e-07 Score=75.52 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=37.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEec-CCCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKIS-EKPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~-~~~~~~l~DtPGi~~~ 234 (352)
.+.++|+++|.+|||||||+|+|.+. ... ...+.++..... .+... ....+.++||||....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~-----~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG-----EFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS-----CCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC-----CCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccch
Confidence 45799999999999999999999963 211 222222222111 12111 1225789999997643
No 229
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.4e-06 Score=74.13 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=38.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+... .....+..+++. ...+.... ...+.++||||...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRF----IWEYDPTLESTY--RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCC----CSCCCTTCCEEE--EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC----CcccCCCCCceE--EEEEEECCEEEEEEEEECCCCCc
Confidence 4569999999999999999999996321 111112222211 11122222 12588999999875
No 230
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.25 E-value=4.5e-07 Score=75.55 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=39.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|+|.+... .....+..|..... ..+...++ ..+.++||||....
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF----GKQYKQTIGLDFFL-RRITLPGNLNVTLQIWDIGGQTIG 69 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT----THHHHHTTTSSEEE-EEEEETTTEEEEEEEEECTTCCTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC----CCCCCCceeEEEEE-EEEEeCCCCEEEEEEEECCCCccc
Confidence 3568999999999999999999996311 11112222221111 12222221 36899999997543
No 231
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.25 E-value=1.4e-06 Score=73.96 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=37.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|++.+... ......|+...........+. .+.++||||..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI-------PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC-------CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC-------CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 4569999999999999999999996321 122222322222111222222 35899999954
No 232
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.24 E-value=3.8e-06 Score=82.90 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=41.8
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK 58 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~ 58 (352)
..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+....
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 45678899999999999999877665555554444 688999999999997543
No 233
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.23 E-value=3.7e-07 Score=81.83 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=57.7
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCCCH
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCKGV 90 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~gi 90 (352)
..+|++++|+|+.++ ..+..+...+. .+.|+++|+||+|+..........+.+ +..+.+ ++.+||+++ .|+
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~---vi~~SA~~g--~gi 154 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS---VIPIQAHKN--IGI 154 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC---EEECBGGGT--BSH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC---EEEEECCCC--CCH
Confidence 889999999999863 22233333343 679999999999987543211111222 234665 999999999 999
Q ss_pred HHHHHHHHHH
Q psy15351 91 QKILPTLQHI 100 (352)
Q Consensus 91 ~~L~~~i~~~ 100 (352)
+++++++.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 234
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.23 E-value=1.5e-06 Score=85.20 Aligned_cols=94 Identities=16% Similarity=0.050 Sum_probs=63.2
Q ss_pred HHHhhccCEEEEEEcCCCCCCCc--CHHHHHHHh----CCCCEEEEEEcccCCCccchHHHHHHHHhhcC--CCCcEEEe
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGR--NHLLQQSVQ----NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS--HISEVIFT 80 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~--~~~l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~--~~~~v~~i 80 (352)
...+..+|++|+|+|+.++.+.. ...+.++++ .++|+++|+||+|+.+.....+..+.+..... ...+++.+
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEE
Confidence 35788999999999998763221 123334433 37899999999999875444444333311111 01148899
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 81 NCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 81 Sa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
||+++ +|+++++++|.+.+...
T Consensus 464 SA~~g--~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 464 CATSG--DGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp BTTTT--BTHHHHHHHHHHHCC--
T ss_pred ECCCC--CCHHHHHHHHHHHHHhc
Confidence 99999 99999999998877654
No 235
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.23 E-value=1.9e-06 Score=73.42 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=60.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~ 70 (352)
..+.++|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+.. ...+..++....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 357889999999999876432221 1222222 478999999999997531 112233333334
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.. +++.+||+++ .|++++++++.+.+..
T Consensus 167 ~~~--~~~~~Sa~~g--~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 167 KAA--SYIECSALTQ--KNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred CCc--EEEEEecCCC--CCHHHHHHHHHHHHhc
Confidence 442 4899999999 9999999998776543
No 236
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.23 E-value=1.2e-06 Score=74.59 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=36.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|++.+. ......++.|.+.. .+ ...+..+.++||||...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~-----~~~~~~~t~~~~~~---~~-~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVE---TV-EYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS-----CCEEEEEETTEEEE---EE-EETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC-----CccccCCcCceeEE---EE-EECCEEEEEEECCCCHh
Confidence 45799999999999999999999862 22222222222211 12 22345689999999854
No 237
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.23 E-value=1.4e-06 Score=74.49 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=52.2
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC-HHHH-HHHh------CCCCEEEEEEcccCCC-ccc--hHHHHHHHHhhcCCCCcE
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN-HLLQ-QSVQ------NIRPMVLVLNKRDLIN-SKH--ESLIEEKVRKEQSHISEV 77 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~-~~l~-~~l~------~~k~~ilVlNK~Dl~~-~~~--~~~~~~~~~~~~~~~~~v 77 (352)
...+..+|++|+|+|+.++.+... ..+. .+.. .+.|+++|+||+|+.+ ... .++..++.++.+.. +
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~---~ 167 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD---F 167 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE---E
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE---E
Confidence 345788999999999987642211 1111 2211 2679999999999987 322 34455555555654 9
Q ss_pred EEeecCC-CCCCCHHHHHHHHHHHhh
Q psy15351 78 IFTNCRN-PNCKGVQKILPTLQHISD 102 (352)
Q Consensus 78 ~~iSa~~-~~~~gi~~L~~~i~~~~~ 102 (352)
+.+||++ + .|+++++++|.+.+.
T Consensus 168 ~~~Sa~~~~--~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPG--KDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC---------CHHHHHHHHHHH
T ss_pred EEeccCCCC--cCHHHHHHHHHHHHH
Confidence 9999999 9 999999999887654
No 238
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.23 E-value=1.5e-06 Score=74.92 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc----------hHHHHHHHHhhcCCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH----------ESLIEEKVRKEQSHI 74 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~----------~~~~~~~~~~~~~~~ 74 (352)
..+..+|++|+|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+... ..+..++..+.+..
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 154 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA- 154 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS-
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc-
Confidence 357889999999999875432211 1222222 3789999999999976432 22333333444542
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 75 SEVIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 75 ~~v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++.+||+++ .|++++++++.+.+..
T Consensus 155 -~~~~~Sa~~g--~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 155 -AYIECSSKTQ--QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp -EEEECCTTTC--TTHHHHHHHHHHHHHC
T ss_pred -eEEEccCCCC--CCHHHHHHHHHHHHhh
Confidence 4899999999 9999999998876654
No 239
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.23 E-value=1.1e-06 Score=73.38 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=39.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||+|++.+. ......++.|.+.. ..+...+. -.+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~-----~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG-----SYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS-----CCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC-----CCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCch
Confidence 4689999999999999999999973 22223344443321 12222221 2478899999754
No 240
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.23 E-value=4.4e-06 Score=80.72 Aligned_cols=91 Identities=9% Similarity=0.008 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCCC-EEEEEEcccCCCcc----c----hHHHHH
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIRP-MVLVLNKRDLINSK----H----ESLIEE 65 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~----~----~~~~~~ 65 (352)
+..+.+...+..+|++|+|+|++.+.. ....+....+. .+.| +++|+||+|+.+.+ . .++..+
T Consensus 107 ~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~ 186 (439)
T 3j2k_7 107 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 186 (439)
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHH
Confidence 456677788899999999999998754 12222222222 4666 89999999997532 1 122333
Q ss_pred HHHhhcCC---CCcEEEeecCCCCCCCHHHHHH
Q psy15351 66 KVRKEQSH---ISEVIFTNCRNPNCKGVQKILP 95 (352)
Q Consensus 66 ~~~~~~~~---~~~v~~iSa~~~~~~gi~~L~~ 95 (352)
++++.++. ..+++++||+++ .|+.++.+
T Consensus 187 ~l~~~g~~~~~~~~~i~iSA~~G--~ni~~l~~ 217 (439)
T 3j2k_7 187 FLKKVGFNPKKDIHFMPCSGLTG--ANLKEQSD 217 (439)
T ss_pred HHHHhcccccCCeeEEEeeccCC--cccccccc
Confidence 44444432 125899999999 99998543
No 241
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.22 E-value=2.4e-06 Score=80.27 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSH 192 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~ 192 (352)
.+|+++|.+|+|||||+|+|.+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999853
No 242
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-06 Score=76.43 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC-HH-HHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN-HL-LQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~-~~-l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
..+..+|++|+|+|+.++.+..+ .. +..+.. .+.|+++|+||+|+.+... ..+..++....+.. ++.+||
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~Sa 157 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL---FTETSA 157 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE---EEECCC
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEeC
Confidence 45788999999999987643221 11 111111 3689999999999976432 23444444445554 889999
Q ss_pred CCCCCCCHHHHHHHHHHHhhh
Q psy15351 83 RNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+++ .|+++++++|.+.+..
T Consensus 158 ~~~--~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 158 LNS--ENVDKAFEELINTIYQ 176 (223)
T ss_dssp C-C--CCHHHHHHHHHHHHTT
T ss_pred CCC--CCHHHHHHHHHHHHHH
Confidence 999 9999999999876654
No 243
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.22 E-value=1.3e-06 Score=75.82 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=61.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCc--------------cchHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINS--------------KHESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~--------------~~~~~~~~~~~~~ 70 (352)
..+..+|++|+|+|+.++.+..+ ..+...+. .+.|+++|.||+|+.+. ....+..++.++.
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 35788999999999987643222 12222222 47899999999999752 1123334444445
Q ss_pred cCCCCcEEEeecCCCCCCC-HHHHHHHHHHHhhh
Q psy15351 71 QSHISEVIFTNCRNPNCKG-VQKILPTLQHISDN 103 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~g-i~~L~~~i~~~~~~ 103 (352)
+.. +++.+||+++ .| ++++++.+.+.+..
T Consensus 174 ~~~--~~~e~SA~~g--~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAE--IYLEGSAFTS--EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCS--EEEECCTTTC--HHHHHHHHHHHHHHHHC
T ss_pred CCC--EEEEeccCCC--cccHHHHHHHHHHHHhc
Confidence 652 4899999999 98 99999998876643
No 244
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.22 E-value=1.6e-06 Score=72.56 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
..++|+++|.+|||||||+|++.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999999986
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.22 E-value=7.1e-07 Score=73.90 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=54.2
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccch-HHHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHE-SLIEEKVRKEQSHISEVIFTNCRNPNCKGV 90 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi 90 (352)
..+|++++|+|+.... ....+. ++.+.+.|+++|.||+|+...... .+..++.+..+.+ ++.+||+++ .|+
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~SA~~~--~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK---VVPLSAAKK--MGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC---EEECBGGGT--BSH
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC---EEEEEcCCC--CCH
Confidence 4899999999997531 111122 222257899999999998643211 0111222233554 899999999 999
Q ss_pred HHHHHHHHHHh
Q psy15351 91 QKILPTLQHIS 101 (352)
Q Consensus 91 ~~L~~~i~~~~ 101 (352)
+++++++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 246
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.22 E-value=1.2e-06 Score=83.78 Aligned_cols=61 Identities=30% Similarity=0.304 Sum_probs=47.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
..-.|+++|.||+|||||+|+|++ ....+++.|++|..+...+....+ ..+.++||||+..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTR------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCS------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHc------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 345689999999999999999986 334678889998876544333332 5789999999975
No 247
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.21 E-value=1.6e-06 Score=74.71 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=38.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC--CCcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE--KPLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~--~~~~~l~DtPGi~ 232 (352)
..++|+++|.+|||||||+|++.+. . .....+.++.+.. .+.... +..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~-----~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG-----Q--YRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS-----C--CCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-----C--cccccCCcceeeE-EEEecCCCccEEEEEECCCCh
Confidence 4689999999999999999999963 2 1222343443332 233332 3468999999974
No 248
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.21 E-value=5.1e-06 Score=70.84 Aligned_cols=89 Identities=16% Similarity=0.037 Sum_probs=61.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|.||+|+.+... .++..++.+..+.. ++.+|
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~---~~e~S 168 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK---HIETS 168 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE---EEEEB
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE---EEEEc
Confidence 34678999999999987543221 22222222 2689999999999976432 23344444444544 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ .|++++++.+.+.+..
T Consensus 169 a~~~--~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 169 AALH--HNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTTT--BSHHHHHHHHHHHHHT
T ss_pred CCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999998876653
No 249
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=72.39 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=36.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISLP 234 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~~ 234 (352)
...++|+++|.+|||||||+|++.+. . .....+.|+..... ...... .-.+.++||||....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~-----~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK-----R--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS-----S--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC-----C--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence 45689999999999999999999863 1 11223333332211 122221 125778999997654
No 250
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.21 E-value=4.6e-06 Score=69.41 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=58.9
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh-------CCCCEEEEEEcccCCCccc---hHHHHHHHHh-hcCCCCc
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ-------NIRPMVLVLNKRDLINSKH---ESLIEEKVRK-EQSHISE 76 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~---~~~~~~~~~~-~~~~~~~ 76 (352)
..+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... ..+..++... .+. +
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~---~ 153 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI---P 153 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSC---C
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCC---e
Confidence 45788999999999987643222 11112211 3679999999999965431 2333333321 234 4
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++.+||+++ .|+++++++|.+.+.
T Consensus 154 ~~~~Sa~~~--~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 154 LFLTSAKNA--INVDTAFEEIARSAL 177 (182)
T ss_dssp EEEEBTTTT--BSHHHHHHHHHHHHH
T ss_pred EEEEecCCC--CCHHHHHHHHHHHHH
Confidence 899999999 999999999876554
No 251
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.21 E-value=3.1e-06 Score=71.43 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=58.9
Q ss_pred HhhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCcc----chHHHHHHHHhhc-CCCCcEEE
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSK----HESLIEEKVRKEQ-SHISEVIF 79 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~~-~~~~~v~~ 79 (352)
.+..+|++++|+|+.++.+..+ ..+.. +.. .+.|+++|.||+|+.... ..++..++..+.+ . +++.
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~---~~~e 158 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRC---TYYE 158 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTC---EEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCC---eEEE
Confidence 5678999999999987643222 12222 222 257999999999995321 1233444444444 3 4899
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh
Q psy15351 80 TNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+||+++ .|++++++++.+.+.
T Consensus 159 ~Sa~~~--~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 159 TCATYG--LNVERVFQDVAQKVV 179 (184)
T ss_dssp EBTTTT--BTHHHHHHHHHHHHH
T ss_pred ecCCCC--CCHHHHHHHHHHHHH
Confidence 999999 999999999876554
No 252
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.21 E-value=1.5e-06 Score=73.52 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=39.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|||||||+|+|.+.. ......++.|.+... + ...+..+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~---~-~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQ----FNEDMIPTVGFNMRK---I-TKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC----CCCSCCCCCSEEEEE---E-EETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCC----CCCccCCCCceeEEE---E-EeCCEEEEEEECCCCH
Confidence 356899999999999999999999632 111233344443321 1 2234468999999964
No 253
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=2.4e-06 Score=73.40 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=59.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccchH--------------HHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKHES--------------LIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~~~--------------~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+... ..+...+. .+.|+++|+||+|+.+..... +..++....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 45788999999999986532211 12222232 378999999999997653211 112222222
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
+.. +++.+||+++ .|+++++++|.+.+.
T Consensus 172 ~~~--~~~~~SA~~g--~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 172 QAY--DYLECSAKTK--EGVREVFETATRAAL 199 (207)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred CCC--EEEEeeCCCC--CCHHHHHHHHHHHHH
Confidence 331 4889999999 999999999987654
No 254
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.8e-06 Score=73.33 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=37.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+... .....+..+.+... .+.... ...+.++||||...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTF----RDTYIPTIEDTYRQ--VISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCC----CCTTSCCCCEEEEE--EEEETTEEEEEEEEECCGGGS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCC----CCcccCccccceeE--EEEECCEEEEEEEEeCCChHH
Confidence 3568999999999999999999986321 11111222222111 111211 12588999999653
No 255
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.21 E-value=2.1e-07 Score=84.23 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=59.3
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCC
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCK 88 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~ 88 (352)
....+|++++|+|+.++ ..+..+...+. .+.|+++|+||+|+.+........+.+ +..+.+ ++.+||+++ .
T Consensus 82 ~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~---~i~~SA~~g--~ 154 (274)
T 3i8s_A 82 LSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP---VIPLVSTRG--R 154 (274)
T ss_dssp HHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC---EEECCCGGG--H
T ss_pred hhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC---EEEEEcCCC--C
Confidence 34799999999999863 12222333332 589999999999987543211111222 234665 999999999 9
Q ss_pred CHHHHHHHHHHHhhh
Q psy15351 89 GVQKILPTLQHISDN 103 (352)
Q Consensus 89 gi~~L~~~i~~~~~~ 103 (352)
|+++|++++.+.++.
T Consensus 155 gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 155 GIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999876653
No 256
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.19 E-value=2.2e-06 Score=74.18 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+.... .+...+. .+.|+++|+||+|+.+.... .+..++.+..
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 457899999999999875332111 1222222 47899999999999865321 2223333334
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.. +++.+||+++ .|+++++++|.+.+.+
T Consensus 181 ~~~--~~~~~SA~~g--~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 181 GAV--AYLECSARLH--DNVHAVFQEAAEVALS 209 (214)
T ss_dssp TCS--EEEECBTTTT--BSHHHHHHHHHHHHHH
T ss_pred CCC--EEEEecCCCC--CCHHHHHHHHHHHHHH
Confidence 442 4899999999 9999999998876543
No 257
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.19 E-value=6.9e-06 Score=77.49 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCE-EEEEE-cccCCCccchHHH----HHHHHhhcCCCC
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPM-VLVLN-KRDLINSKHESLI----EEKVRKEQSHIS 75 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~-ilVlN-K~Dl~~~~~~~~~----~~~~~~~~~~~~ 75 (352)
+.++.+...+..+|++|+|+| +........+...++. .+.|. ++++| |+|+ +++..+.. .+++.+.+....
T Consensus 72 ~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~ 149 (370)
T 2elf_A 72 KTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDW 149 (370)
T ss_dssp TCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCce
Confidence 345677788899999999999 7654433333333333 56777 99999 9999 65432322 222322222223
Q ss_pred cEEE--eecCC---CCCCCHHHHHHHHHHHhhh
Q psy15351 76 EVIF--TNCRN---PNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 76 ~v~~--iSa~~---~~~~gi~~L~~~i~~~~~~ 103 (352)
++++ +||++ + .|+++|++.|.+.++.
T Consensus 150 ~ii~~~~SA~~~~~g--~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 150 ECISLNTNKSAKNPF--EGVDELKARINEVAEK 180 (370)
T ss_dssp EEEECCCCTTSSSTT--TTHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCC--CCHHHHHHHHHhhccc
Confidence 6899 99999 9 9999999999887654
No 258
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.19 E-value=1.4e-06 Score=74.60 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=38.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|++.+... .....|.++......+...+. -.+.++||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQF------PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSC------CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcC------CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 3568999999999999999999996321 111223322222222222221 257899999964
No 259
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.18 E-value=1.5e-06 Score=74.25 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=61.0
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++....+.. ++.+|
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 167 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT---FMESS 167 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECC
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe---EEEEe
Confidence 45678999999999986532211 11112211 2679999999999976543 22333334444554 89999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 82 CRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
|+++ .|+++++++|.+.+...
T Consensus 168 a~~~--~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 168 AREN--QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TTCH--HHHHHHHHHHHHHHHHC
T ss_pred CCCC--CCHHHHHHHHHHHHHhh
Confidence 9999 99999999998766543
No 260
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.18 E-value=2.2e-06 Score=81.95 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCc-cch----HHHHHHHHhhcCC--
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINS-KHE----SLIEEKVRKEQSH-- 73 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~-~~~----~~~~~~~~~~~~~-- 73 (352)
+..+.+...+..+|++|+|+|++++......++...+. .+.| +++|+||+|+.+. +.. .+..+++.+.++.
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD 166 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccccc
Confidence 34567778899999999999999876544433334333 5677 8899999999853 211 2333444444431
Q ss_pred CCcEEEeecCCCCCCC------------------HHHHHHHHHHHhhh
Q psy15351 74 ISEVIFTNCRNPNCKG------------------VQKILPTLQHISDN 103 (352)
Q Consensus 74 ~~~v~~iSa~~~~~~g------------------i~~L~~~i~~~~~~ 103 (352)
..+++++||+++ .| +.+|++.+.+.++.
T Consensus 167 ~~~~i~~SA~~g--~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 167 EVPVIRGSALLA--LEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp TSCEEECCHHHH--HHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEccHHHh--hhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 125999999998 76 77888888877653
No 261
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.18 E-value=1.2e-06 Score=74.61 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~~ 233 (352)
..++|+++|.||||||||+|++.+. ....++..+.++.+... .+.+ ++. .+.++||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV-----HDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKG 68 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH-----SCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC-----cCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcc
Confidence 3589999999999999999999852 11112222332222211 2222 232 457899999654
No 262
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.17 E-value=8.3e-07 Score=75.89 Aligned_cols=61 Identities=30% Similarity=0.394 Sum_probs=18.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCcee-Eeee-eEEecC---CCcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMS-QVKISE---KPLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~-~~~~-~~~~~~---~~~~~l~DtPGi~ 232 (352)
..++|+++|.+|||||||+|+|.+. .....+..+.|+. +... .+...+ ...+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK-----GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC---------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC-----CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 4689999999999999999999862 1112223333332 2221 222222 2258999999973
No 263
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.16 E-value=8.9e-07 Score=86.65 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=44.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-----------------------CCceecCCCCCceeEeeeeEEecCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-----------------------GKAVPVGPKAGVTRSVMSQVKISEK 220 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-----------------------~~~~~~~~~pg~T~~~~~~~~~~~~ 220 (352)
...++|+++|.+|+|||||+|+|++.. +.. .........+|+|.+.........+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 467999999999999999999997530 000 0011233456888876554444455
Q ss_pred CcEEEEeCCCCCC
Q psy15351 221 PLIYILDTPGISL 233 (352)
Q Consensus 221 ~~~~l~DtPGi~~ 233 (352)
..+.|+||||...
T Consensus 111 ~~~~iiDTPG~~~ 123 (483)
T 3p26_A 111 ANFTIVDAPGHRD 123 (483)
T ss_dssp CEEEEECCCCCGG
T ss_pred ceEEEEECCCcHH
Confidence 6899999999843
No 264
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.15 E-value=4.1e-06 Score=81.95 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=55.8
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCCC-------cCHHHHHHHh--CCCCEEEEEEcccCCCcc--chH----HHHHHH
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-------RNHLLQQSVQ--NIRPMVLVLNKRDLINSK--HES----LIEEKV 67 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-------~~~~l~~~l~--~~k~~ilVlNK~Dl~~~~--~~~----~~~~~~ 67 (352)
+..+.+...+..+|++|+|+|++.+... ...+...++. ..+|+++|+||+|+.+.. ..+ ++.+++
T Consensus 123 ~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l 202 (483)
T 3p26_A 123 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202 (483)
T ss_dssp GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence 4567788889999999999999986322 1122222222 336799999999998732 222 223334
Q ss_pred HhhcCC--CCcEEEeecCCCCCCCHHH
Q psy15351 68 RKEQSH--ISEVIFTNCRNPNCKGVQK 92 (352)
Q Consensus 68 ~~~~~~--~~~v~~iSa~~~~~~gi~~ 92 (352)
.+.+.. ..+++++||+++ .|+.+
T Consensus 203 ~~~g~~~~~~~~i~iSA~~g--~gi~e 227 (483)
T 3p26_A 203 VDIGFFEDNINWVPISGFSG--EGVYK 227 (483)
T ss_dssp HHHTCCGGGEEEEECCSSSC--TTSSS
T ss_pred HHcCCCcccceEEEEeeecC--CCccc
Confidence 333432 125899999999 88874
No 265
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.15 E-value=4.2e-06 Score=80.70 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CC-CCEEEEEEcccCCCcc--c----hHHHHHHHHhhc--CC
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSK--H----ESLIEEKVRKEQ--SH 73 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~--~----~~~~~~~~~~~~--~~ 73 (352)
..+.+...+..+|++|+|+|++++......+...++. .+ +|+++|+||+|+.+.+ . ..++.+++++.+ ..
T Consensus 117 f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~ 196 (434)
T 1zun_B 117 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 196 (434)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3456667889999999999999876443333323333 34 4689999999998732 1 233344444445 22
Q ss_pred CCcEEEeecCCCCCCCHHH
Q psy15351 74 ISEVIFTNCRNPNCKGVQK 92 (352)
Q Consensus 74 ~~~v~~iSa~~~~~~gi~~ 92 (352)
..+++.+||+++ .|+.+
T Consensus 197 ~~~~i~vSA~~g--~gi~~ 213 (434)
T 1zun_B 197 TMAFVPMSALKG--DNVVN 213 (434)
T ss_dssp EEEEEECCTTTC--TTTSS
T ss_pred CceEEEEeccCC--CCccc
Confidence 125899999999 99886
No 266
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.15 E-value=2.8e-06 Score=71.45 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=36.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+... .....+..+.+.. ..+.... .-.+.++||||..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccceeEE--EEEEECCEEEEEEEEECCCCh
Confidence 3568999999999999999999986321 1111222222211 1122221 1257899999964
No 267
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.15 E-value=7.4e-07 Score=85.85 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=41.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCC-------CCC---CCceecCCCCCceeEeeeeEEecC-----------CCcEEE
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSH-------MKK---GKAVPVGPKAGVTRSVMSQVKISE-----------KPLIYI 225 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~-------~~~---~~~~~~~~~pg~T~~~~~~~~~~~-----------~~~~~l 225 (352)
+-..|+|+|.+|+|||||+|.|.+.. +.. .+....+..| +|+....+++... +..+.|
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34679999999999999999998620 000 0111222222 3333333444332 125899
Q ss_pred EeCCCCCCCC
Q psy15351 226 LDTPGISLPR 235 (352)
Q Consensus 226 ~DtPGi~~~~ 235 (352)
+||||+..+.
T Consensus 145 lDTeG~~~~~ 154 (447)
T 3q5d_A 145 MDTQGTFDSQ 154 (447)
T ss_dssp EEEECCCSSH
T ss_pred EcCCcccccc
Confidence 9999998764
No 268
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.15 E-value=1.1e-06 Score=73.33 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=32.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecC-CCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISE-KPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~-~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+... ....++|+..... .+...+ .-.+.++||||...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF-------PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC-------C----------CBCCCC-------CEEECCCC-CT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 3568999999999999999999986321 1222333322211 111111 12466999999754
No 269
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.14 E-value=2.8e-06 Score=72.40 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=36.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEe--cCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKI--SEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|.+.+.. ....+.....+++.. ...+ ...-.+.++||||...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKM----SPNETLFLESTNKIY--KDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCC----CGGGGGGCCCCCSCE--EEEECCTTSCCEEEEECCSSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcC----CCcceeeecccccee--eeeccCCCeeEEEEEECCCCHH
Confidence 467999999999999999999998631 111111111112111 1112 2234689999999754
No 270
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=1.9e-06 Score=74.11 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=36.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
..++|+++|.+|||||||+|+|.+.. ... ...|.++......+...+. -.+.++||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~-----~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDE-----FPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-----CC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCC-----CCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 45899999999999999999999632 111 1112222222122222221 2578999999754
No 271
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2e-06 Score=74.87 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=37.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+... .....+..|.+... ..+...+. -.+.++||||...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEF----NMDSKSTIGVEFAT-RTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCC----CC------CCSEEE-EEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCcccceeEE-EEEEECCEEEEEEEEECCCccc
Confidence 3468999999999999999999996321 11122222322221 12222211 2589999999654
No 272
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=2.7e-06 Score=73.88 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCCC--cEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEKP--LIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~--~~~l~DtPGi~ 232 (352)
..++|+++|.||||||||+|++.+. ....+...+.++.+... .+.+ ++. .+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~-----~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGV-----HDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC-----CCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCc
Confidence 4589999999999999999999862 11112222222222111 2222 232 45789999853
No 273
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.13 E-value=3e-07 Score=78.67 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=38.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+.. ......|++|.+... .+...+. ..+.++||||...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 456899999999999999999998631 111222333333222 2222221 2588999999654
No 274
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.13 E-value=6.9e-06 Score=77.33 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=64.9
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHH---HHHHHh----CCCCEEEEEEcccCCCccchHHHHH----HHHhhcC
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHL---LQQSVQ----NIRPMVLVLNKRDLINSKHESLIEE----KVRKEQS 72 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~---l~~~l~----~~k~~ilVlNK~Dl~~~~~~~~~~~----~~~~~~~ 72 (352)
+++.++..+..+|++++|+|+.++....... +.+.+. .++|+++|+||+|+.+... ....+ ..+....
T Consensus 247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSKELYS 325 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHHHhcC
Confidence 4566778899999999999998764111111 122232 4689999999999987542 22111 1122211
Q ss_pred CCCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 73 HISEVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
...+++++||+++ .|+++|+++|.+.+...
T Consensus 326 ~~~~~~~~SA~~g--~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 326 PIFDVIPISALKR--TNLELLRDKIYQLATQL 355 (364)
T ss_dssp CEEEEEECBTTTT--BSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCC--cCHHHHHHHHHHHhccc
Confidence 1114789999999 99999999998877653
No 275
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.13 E-value=5.2e-07 Score=90.40 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=30.9
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhCCC--CCCC-----------------------CceecCCCCCceeEeeeeEEecC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRSSH--MKKG-----------------------KAVPVGPKAGVTRSVMSQVKISE 219 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-----------------------~~~~~~~~pg~T~~~~~~~~~~~ 219 (352)
....++|+++|.+|+|||||+|+|+... +... ........+|+|++.........
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3466899999999999999999996310 0000 00011126788988764433334
Q ss_pred CCcEEEEeCCCCCC
Q psy15351 220 KPLIYILDTPGISL 233 (352)
Q Consensus 220 ~~~~~l~DtPGi~~ 233 (352)
+..+.|+||||...
T Consensus 254 ~~~i~iiDTPGh~~ 267 (592)
T 3mca_A 254 KKIYEIGDAPGHRD 267 (592)
T ss_dssp -----CCEEESSSE
T ss_pred CeEEEEEECCChHH
Confidence 56799999999764
No 276
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.12 E-value=2.2e-06 Score=73.46 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=35.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+... .... .|..+.+... .+...+. -.+.++||||..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~----~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF----SERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC----CCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4568999999999999999999986321 1111 1211222211 2222211 268899999964
No 277
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.12 E-value=1.8e-05 Score=66.30 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred hhccCEEEEEEcCCCCCC-----------CcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCC----C
Q psy15351 12 LKNVDIVIEVHDSRMPFT-----------GRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI----S 75 (352)
Q Consensus 12 i~~aD~vl~VvDar~p~~-----------~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~----~ 75 (352)
+..+++++.|+|+..... ..+..+...+. .+.|+++|+||+|+.+.. .....++.++.+..+ .
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence 666889999999753210 01111223332 579999999999998754 122222223334332 1
Q ss_pred cEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 76 EVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 76 ~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
+++.+||+++ .|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~--~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFG--DNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTC--TTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCC--CCHHHHHHHHHHhcchh
Confidence 3789999999 99999999998776543
No 278
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.12 E-value=6.4e-06 Score=68.57 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=58.2
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh-------CCCCEEEEEEcccCCCcc----chHHHHHHHHhh-cCCCCc
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-------NIRPMVLVLNKRDLINSK----HESLIEEKVRKE-QSHISE 76 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~-------~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~~~-~~~~~~ 76 (352)
..+..+|++++|+|+.++.+..+. .+.+++. .+.|+++|.||+|+.+.. ..++..++.++. +. +
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~---~ 144 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC---S 144 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE---E
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC---e
Confidence 456789999999999876432221 1111221 267999999999994211 123333444333 34 4
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++.+||+++ .|++++++++.+.+.
T Consensus 145 ~~~~Sa~~~--~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 145 YYETXATYG--LNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEBTTTT--BTHHHHHHHHHHHHH
T ss_pred EEEEecccc--CCHHHHHHHHHHHHH
Confidence 899999999 999999999876554
No 279
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.11 E-value=3.4e-06 Score=72.97 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=32.8
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-eEEecCC-CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-QVKISEK-PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~-~~~~l~DtPGi~~ 233 (352)
.+.++|+++|.+|||||||+|+|.+. .. ......++..... .+...+. -.+.++||||...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~-----~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG-----AF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC-----CC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 35689999999999999999999963 11 1112222222111 2222221 1588999999653
No 280
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.11 E-value=3.9e-06 Score=72.20 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=38.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+... ....+.|+.+.........+. .+.++||||...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC-------CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-------CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 3568999999999999999999986321 112222222221111112222 688999999864
No 281
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.11 E-value=2.9e-06 Score=76.04 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=57.9
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHH-HHHhCCCCEEEEEEcccCCCccchH-HHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNIRPMVLVLNKRDLINSKHES-LIEEKVRKEQSHISEVIFTNCRNPNCKGV 90 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~k~~ilVlNK~Dl~~~~~~~-~~~~~~~~~~~~~~~v~~iSa~~~~~~gi 90 (352)
..+|++++|+|++++. ....+. ++...+.|+++|+||+|+....... ...+..+..+.+ ++.+||+++ .|+
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~---vi~~SA~~g--~gi 154 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP---VVFTSSVTG--EGL 154 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC---EEECCTTTC--TTH
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC---EEEEEeeCC--cCH
Confidence 6899999999998642 122222 2332689999999999986533211 112222334665 999999999 999
Q ss_pred HHHHHHHHHHhh
Q psy15351 91 QKILPTLQHISD 102 (352)
Q Consensus 91 ~~L~~~i~~~~~ 102 (352)
+++++++.+..+
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987664
No 282
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.10 E-value=2.3e-06 Score=74.01 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=23.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...++|+++|.+|||||||+|+|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4569999999999999999999996
No 283
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.09 E-value=7.6e-06 Score=71.27 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=61.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
.....+|++++|.|..++.+..+ ..+..+.. .+.|++||.||+||..... .++..++.++.+.. ++.+||
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~---~~e~SA 157 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM---FIETSA 157 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEEEBT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe---eEEEeC
Confidence 46789999999999987643322 11222221 4678999999999976432 34444555555665 889999
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy15351 83 RNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~ 102 (352)
+++ .|++++++.|.+.+.
T Consensus 158 ktg--~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 158 KAG--YNVKQLFRRVAAALP 175 (216)
T ss_dssp TTT--BSHHHHHHHHHHHC-
T ss_pred CCC--cCHHHHHHHHHHHHH
Confidence 999 999999998876654
No 284
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.09 E-value=5.5e-06 Score=78.97 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=66.6
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCcc-ch----HHHHHHHHhhcCC--C
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSK-HE----SLIEEKVRKEQSH--I 74 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~-~~----~~~~~~~~~~~~~--~ 74 (352)
..+.+...+..+|++|+|+|++++......+....+. .+.| +++|+||+|+.+.. .. ++..+++++.++. .
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 3456777889999999999999876443333333333 5677 68999999998532 11 2334455444431 1
Q ss_pred CcEEEeecCCCCCC---------C-HHHHHHHHHHHhhh
Q psy15351 75 SEVIFTNCRNPNCK---------G-VQKILPTLQHISDN 103 (352)
Q Consensus 75 ~~v~~iSa~~~~~~---------g-i~~L~~~i~~~~~~ 103 (352)
.+++++||+++ . | +.+|++.|.+.++.
T Consensus 159 ~~~i~~SA~~g--~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 159 TPIIVGSALCA--LEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCEEECCHHHH--HTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CcEEEeehhhc--ccccCCCccCCcHHHHHHHHHHhCCC
Confidence 25999999986 5 3 88999999887764
No 285
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.08 E-value=3.7e-06 Score=82.50 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=41.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
..++|+++|.||||||||+|+|.+. ......++.|++... ....+..+.++||||...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~-----~~~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLG-----QSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS-----SCCCCCCCSSEEEEE----EESSSCEEEEEEECCCGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcC-----CCCCcCCccceeEEE----EEeCCEEEEEEECCCcHH
Confidence 4689999999999999999999973 333334444444332 223445799999999643
No 286
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.08 E-value=6.2e-06 Score=69.56 Aligned_cols=91 Identities=26% Similarity=0.272 Sum_probs=56.7
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEE
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIF 79 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~ 79 (352)
....+..+|++|+|+|+.++.+... ..+..+.. .+.|+++|+||+|+.+... .....++....+.. ++.
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~ 163 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP---LFE 163 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC---EEE
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE---EEE
Confidence 3456789999999999987533222 11222221 4689999999999976432 23333333444555 899
Q ss_pred eecCCCC-CCCHHHHHHHHHHHh
Q psy15351 80 TNCRNPN-CKGVQKILPTLQHIS 101 (352)
Q Consensus 80 iSa~~~~-~~gi~~L~~~i~~~~ 101 (352)
+||+++. ..|+++++++|.+.+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHHC---
T ss_pred EeCCcCCcccCHHHHHHHHHHHH
Confidence 9999861 146777777765433
No 287
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.35 E-value=4.5e-07 Score=77.75 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccch--------------HHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKHE--------------SLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~~--------------~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+.... .+..++.+..
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
Confidence 457889999999999876443321 2222222 27899999999999764311 1122222222
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQH 99 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~ 99 (352)
+.. +++.+||+++ .|+++++++|.+
T Consensus 177 ~~~--~~~~vSA~~g--~gi~~l~~~l~~ 201 (204)
T 3th5_A 177 GAV--KYLECSALTQ--RGLKTVFDEAIR 201 (204)
Confidence 331 4788999999 999999988764
No 288
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.08 E-value=5e-06 Score=72.00 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=36.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC-CcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK-PLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|++.+... .....++.+.+.. ..+..... -.+.++||||..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~----~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENYT--ACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEE--EEEEC--CEEEEEEEEECCSG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC----CCCcCCeeeeeEE--EEEEECCEEEEEEEEECCCCH
Confidence 4579999999999999999999986311 1111222222221 11222211 257899999964
No 289
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.07 E-value=4.4e-06 Score=71.93 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=36.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecC-CCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE-KPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~~l~DtPGi~ 232 (352)
...++|+++|.+|||||||+|+|.+... .....++.+.+. ...+.... .-.+.++||||..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~----~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENY--TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEE--EEEEESSSSEEEEEEEEECCSG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeE--EEEEEECCEEEEEEEEeCCCcH
Confidence 4568999999999999999999996321 111112222211 11122221 1258899999964
No 290
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.07 E-value=1.1e-05 Score=80.76 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=62.7
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc-------------------------hHHHH
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH-------------------------ESLIE 64 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~-------------------------~~~~~ 64 (352)
.+..+|++|+|+|+.++..........+++ .+.|+++|+||+|+.+... ..++.
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~ 169 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV 169 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356799999999999876544434434444 6889999999999975210 01222
Q ss_pred HHHHhhcCC------------CCcEEEeecCCCCCCCHHHHHHHHHHHhhh
Q psy15351 65 EKVRKEQSH------------ISEVIFTNCRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 65 ~~~~~~~~~------------~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~ 103 (352)
+.+.+.++. ..+++++||+++ .|+++|+++|...++.
T Consensus 170 ~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG--~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 170 GKLHEEGFESERFDRVTDFASQVSIIPISAITG--EGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHhccCcceEEEEeccCC--CCchhHHHHHHhhccc
Confidence 333333321 125899999999 9999999999877653
No 291
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.07 E-value=3.6e-06 Score=71.26 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=38.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+... ....+.|+...........+ -.+.++||||...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAF-------PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSC-------CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 3568999999999999999999996321 12223333222111111222 2578999999764
No 292
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.06 E-value=3.6e-06 Score=72.79 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=38.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|+|.+... .....+..|.++... ....+.++||||...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~---~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADY-------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC---CCBCCCSSCEEETTG-------GGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCeeeecCceEEEEe-------eCceEEEEECCCcHH
Confidence 4568999999999999999999997321 011112233333221 234689999999854
No 293
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.06 E-value=3.8e-06 Score=77.10 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=64.7
Q ss_pred HHHHHHHhhccCEEEEEEcC-CCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--c--CCCCcE
Q psy15351 5 LKDIEKHLKNVDIVIEVHDS-RMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--Q--SHISEV 77 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDa-r~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~--~~~~~v 77 (352)
...+...+..+|++++|+|+ ..++...+. .+.+.+. .++|+++|+||+|+.+... .+.+.++.. . ..+.++
T Consensus 158 ~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v 235 (315)
T 1jwy_B 158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGV 235 (315)
T ss_dssp HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEEC
T ss_pred HHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEE
Confidence 34567788999999999996 555544443 5556665 5789999999999987653 122333221 1 221234
Q ss_pred EEeecCC---CCCCCHHHHHHHHHHHhhhcc
Q psy15351 78 IFTNCRN---PNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 78 ~~iSa~~---~~~~gi~~L~~~i~~~~~~~~ 105 (352)
..+|+.+ + .|+.++++.+.+.++..+
T Consensus 236 ~~~sa~~~~~~--~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 236 INRSQEDIIAK--KSIRESLKSEILYFKNHP 264 (315)
T ss_dssp CCCCHHHHSSS--CCHHHHHHHHHHHHHTCT
T ss_pred ecCChhhhccC--CCHHHHHHHHHHHHhCCC
Confidence 4455555 6 899999999998887654
No 294
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.06 E-value=5.4e-06 Score=70.04 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=60.5
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh------CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEE
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ------NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVI 78 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~ 78 (352)
...+..+|++++|+|+.++.+... ..+..+.. .+.|+++|+||+|+..... .++..++.++.+.. ++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~ 162 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL---FF 162 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE---EE
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc---EE
Confidence 346788999999999986532211 11111111 3789999999999965432 23444455555664 89
Q ss_pred Eeec-CCCCCCCHHHHHHHHHHHh
Q psy15351 79 FTNC-RNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 79 ~iSa-~~~~~~gi~~L~~~i~~~~ 101 (352)
.+|| +++ .|++++++.+.+.+
T Consensus 163 e~Sa~~~g--~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 163 EVSACLDF--EHVQHVFHEAVREA 184 (187)
T ss_dssp ECCSSSCS--HHHHHHHHHHHHHH
T ss_pred EEeecCcc--ccHHHHHHHHHHHH
Confidence 9999 899 99999999887654
No 295
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.06 E-value=5e-07 Score=77.23 Aligned_cols=85 Identities=19% Similarity=0.086 Sum_probs=51.3
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHH---Hh----CCCCEEEEEEcccCCCccch--HHHHHHHHhhcCCCCcEEEee
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQS---VQ----NIRPMVLVLNKRDLINSKHE--SLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~---l~----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~~~~v~~iS 81 (352)
.+..+|++++|+|+.++.+. ..+..+ +. .+.|+++|+||+|+.+.... ....++....+.+ ++.+|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~vS 176 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP---FLETS 176 (199)
T ss_dssp --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC---BCCCC
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe---EEEEE
Confidence 56789999999999875322 122222 22 26899999999999765321 1222333344555 88999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++++++|.+.+.
T Consensus 177 A~~g--~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 177 AKNA--TNVEQSFMTMAAEIK 195 (199)
T ss_dssp C-----HHHHHHHHHHTTTTT
T ss_pred CCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999876554
No 296
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.06 E-value=6.5e-07 Score=88.29 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=45.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEE-ecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK-ISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~~l~DtPGi~~ 233 (352)
++++|+++|.+|+|||||+|+|++ ........||+|.+...... ...+..+.|+||||...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~------~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRK------TQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHH------HHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------CCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 467899999999999999999985 23344567888888653222 22455799999999653
No 297
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.06 E-value=7.5e-06 Score=78.32 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=65.1
Q ss_pred HHHHhhccCEEEEEEcCC-CCCCCcCH---HHHHHHh--CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEee
Q psy15351 8 IEKHLKNVDIVIEVHDSR-MPFTGRNH---LLQQSVQ--NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTN 81 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar-~p~~~~~~---~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iS 81 (352)
..+.++++|.+++|+|+. .++..... ++..+.. ..+|.++|+||+|+........+.+.+++.+.. ++.+|
T Consensus 229 fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~---vi~iS 305 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLA---VLPVS 305 (416)
T ss_dssp HHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC---EEECC
T ss_pred HHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe---EEEEE
Confidence 456678999999999995 33221111 1111111 368999999999998764345555556555555 99999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 82 CRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
|+++ +|+++|+++|.+.+...
T Consensus 306 A~~g--~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 306 ALTG--AGLPALKEALHALVRST 326 (416)
T ss_dssp TTTC--TTHHHHHHHHHHHHHTS
T ss_pred CCCc--cCHHHHHHHHHHHHHhc
Confidence 9999 99999999999887654
No 298
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.05 E-value=4.5e-06 Score=70.29 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.++|+++|.+|||||||+|++.+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 299
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.04 E-value=1.5e-06 Score=73.53 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=22.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...++|+++|.+|||||||+|.+.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh
Confidence 3568999999999999999999986
No 300
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.04 E-value=8.3e-07 Score=82.78 Aligned_cols=25 Identities=48% Similarity=0.599 Sum_probs=22.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
..+..++++|.||+|||||+|.|.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999973
No 301
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.03 E-value=4e-06 Score=78.67 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHhh----cC---C-CCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE----QS---H-ISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~----~~---~-~~~v~~iS 81 (352)
..+..+|++++|+|+...... ..+...+ ..+|.++|+||+|+.+........+.+.+. .. . ..+++.+|
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~-~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 264 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGV-LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMS 264 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTS-GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEB
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhH-hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEE
Confidence 345899999999997643211 1111111 346899999999997654333333333221 10 0 12599999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~~ 103 (352)
|+++ +|+++|+++|.+.++.
T Consensus 265 A~~g--~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 265 AVEG--RGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGT--BSHHHHHHHHHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHHHHH
Confidence 9999 9999999999887764
No 302
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.01 E-value=9.7e-07 Score=87.16 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=41.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCC----------ceecC------CCCCceeEeeeeEEecCCCcEEEEeCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGK----------AVPVG------PKAGVTRSVMSQVKISEKPLIYILDTPG 230 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~----------~~~~~------~~pg~T~~~~~~~~~~~~~~~~l~DtPG 230 (352)
+..+|+++|.+|+|||||+|+|+...-.... ...+. ..+|+|...........+..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3468999999999999999999621000000 00011 1256665544333333455799999999
Q ss_pred CCCC
Q psy15351 231 ISLP 234 (352)
Q Consensus 231 i~~~ 234 (352)
....
T Consensus 92 ~~df 95 (528)
T 3tr5_A 92 HADF 95 (528)
T ss_dssp STTC
T ss_pred chhH
Confidence 8653
No 303
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.01 E-value=3.9e-06 Score=77.94 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|||||||+|+|.+. ..... .| |...........+..+.++||||-.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~-----~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLG-----EIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSS-----CCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred cCcceEEEECCCCccHHHHHHHHhCC-----CCCCc--cc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 45689999999999999999999862 22222 22 3322222222234478999999944
No 304
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.00 E-value=5.2e-06 Score=69.80 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=57.6
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+..+ ..+...++ .+.|+++|+||+|+.+.. ..++..++.++.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 35688999999999987533221 11222222 478999999999997421 122333333344
Q ss_pred cCCCCcEEEeecC-CCCCCCHHHHHHHHHHHh
Q psy15351 71 QSHISEVIFTNCR-NPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 71 ~~~~~~v~~iSa~-~~~~~gi~~L~~~i~~~~ 101 (352)
+.. +++.+||+ ++ .|++++++.+.+.+
T Consensus 154 ~~~--~~~e~Sa~~~~--~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 GAA--TYIECSALQSE--NSVRDIFHVATLAC 181 (184)
T ss_dssp TCS--EEEECBTTTBH--HHHHHHHHHHHHHH
T ss_pred CCc--EEEEeeecCCC--cCHHHHHHHHHHHH
Confidence 422 48999998 68 89999999887643
No 305
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.99 E-value=7.9e-06 Score=68.91 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
.+.++|+++|.+|||||||+|++.+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46799999999999999999999863
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.98 E-value=8e-06 Score=69.66 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
.++|+++|.+|||||||+|+|.+.. ......+..|.+... ..+.+. +. .+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~----~~~~~~~t~~~~~~~-~~i~~~-g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE----FNLESKSTIGVEFAT-RSIQVD-GKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC----CCC---CCCSCEEEE-EEEEET-TEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC----CCCCCCCccceeEEE-EEEEEC-CEEEEEEEEECCCchh
Confidence 4789999999999999999999731 111222223322221 122232 32 467899999653
No 307
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.98 E-value=7.5e-06 Score=75.38 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=59.9
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh---CCCCEEEEEEcccCCCccc--------------hHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ---NIRPMVLVLNKRDLINSKH--------------ESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~---~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~~~ 70 (352)
..+..+|++++|+|+.++.+..+. .+...+. .+.|+++|+||+|+.+... ..+..++.+..
T Consensus 222 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 301 (332)
T 2wkq_A 222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 301 (332)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc
Confidence 457899999999999876432221 1222222 3789999999999975421 12333333344
Q ss_pred cCCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 71 QSHISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 71 ~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
+.. +++.+||+++ .|++++++.|.+.+
T Consensus 302 ~~~--~~~~~Sa~~~--~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 302 GAV--KYLECSALTQ--RGLKTVFDEAIRAV 328 (332)
T ss_dssp TCS--EEEECCTTTC--TTHHHHHHHHHHHH
T ss_pred CCc--EEEEecCCCC--cCHHHHHHHHHHHH
Confidence 442 4899999999 99999999987654
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.98 E-value=1e-05 Score=68.65 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=37.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
..++++++|.+|||||||+|.+.+.. ......+..|++... ..+.+ .+. .+.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~----~~~~~~~t~~~~~~~-~~i~~-~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE----FNLESKSTIGVEFAT-RSIQV-DGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC----CCCSCCCCCSEEEEE-EEEEE-TTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC----CCCCCCCccceEEEE-EEEEE-CCEEEEEEEEECCCCcc
Confidence 45899999999999999999999731 111222233322211 12223 333 345699999864
No 309
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.97 E-value=7.2e-06 Score=73.98 Aligned_cols=84 Identities=6% Similarity=0.070 Sum_probs=50.2
Q ss_pred cCEEEEEEcCC-CCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHH----HHHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351 15 VDIVIEVHDSR-MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL----IEEKVRKEQSHISEVIFTNCRNPNCKG 89 (352)
Q Consensus 15 aD~vl~VvDar-~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~----~~~~~~~~~~~~~~v~~iSa~~~~~~g 89 (352)
+|++++++|.. .++...+..+.+.+..++|+++|+||+|+.++..... +.+.+...++. ++.+||.++ +|
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~---v~~~sa~~~--~~ 190 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK---IYEFPETDD--EE 190 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC---CCCC---------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe---EEcCCCCCC--hh
Confidence 77888888654 4555555555555545789999999999987655433 33344445665 888999999 99
Q ss_pred HHHHHHHHHHHhhh
Q psy15351 90 VQKILPTLQHISDN 103 (352)
Q Consensus 90 i~~L~~~i~~~~~~ 103 (352)
++++.++|.+.++-
T Consensus 191 ~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 191 ENKLVKKIKDRLPL 204 (274)
T ss_dssp ----CHHHHHTCSE
T ss_pred HHHHHHHHhcCCCc
Confidence 99999998876653
No 310
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.97 E-value=4.5e-06 Score=85.19 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=38.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC--CCCCC----CceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKG----KAVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~----~~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
...+|+++|.+|+|||||+|+|... .+... ....+.+ .+|+|...........+..+.|+||||....
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4578999999999999999999841 11000 0001122 4677766544333334567999999999753
No 311
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=6.1e-06 Score=77.63 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=22.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
+..++|+++|.+|+|||||+|+|.+.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999863
No 312
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.96 E-value=3.5e-06 Score=70.88 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=56.3
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch-HHHHHHHHhhcCCCCcEEEeecCCCCCCCH
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE-SLIEEKVRKEQSHISEVIFTNCRNPNCKGV 90 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi 90 (352)
..+|++++|+|+... .....+...+. .+.|+++|+||+|+...... ....++.+..+.. ++.+||+++ .|+
T Consensus 84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~--~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK---VVPLSAAKK--MGI 156 (188)
T ss_dssp HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC---EEECBGGGT--BSH
T ss_pred cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC---eEEEEecCC--CCH
Confidence 469999999998742 11112222222 57899999999998643211 1111222233555 999999999 999
Q ss_pred HHHHHHHHHHhhhc
Q psy15351 91 QKILPTLQHISDNM 104 (352)
Q Consensus 91 ~~L~~~i~~~~~~~ 104 (352)
+++++++.+.+...
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877653
No 313
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.95 E-value=1.9e-06 Score=84.31 Aligned_cols=61 Identities=30% Similarity=0.460 Sum_probs=44.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
+..+|+++|.+|+|||||+|+|++ .....+..+|+|.+.........+..+.|+||||...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~------~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRS------TKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHH------HHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc------CCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 567899999999999999999985 2233455678887654322223456799999999754
No 314
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.95 E-value=6.4e-06 Score=70.89 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=57.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC--HHHHHHHh---CCCCEEEEEEcccCCCcc--------------chHHHHHHHHhh
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN--HLLQQSVQ---NIRPMVLVLNKRDLINSK--------------HESLIEEKVRKE 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~--~~l~~~l~---~~k~~ilVlNK~Dl~~~~--------------~~~~~~~~~~~~ 70 (352)
..+..+|++|+|+|+.++.+..+ ..+...++ .+.|+++|+||+|+.+.. ..++..++.++.
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 35688999999999987533221 11222222 478999999999997421 112233333343
Q ss_pred cCCCCcEEEeecC-CCCCCCHHHHHHHHHHHh
Q psy15351 71 QSHISEVIFTNCR-NPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 71 ~~~~~~v~~iSa~-~~~~~gi~~L~~~i~~~~ 101 (352)
+.. +++.+||+ ++ .|++++++.+.+.+
T Consensus 175 ~~~--~~~e~SAk~~~--~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 GAA--TYIECSALQSE--NSVRDIFHVATLAC 202 (205)
T ss_dssp TCS--EEEECCTTTCH--HHHHHHHHHHHHHH
T ss_pred CCC--EEEEeeeccCC--cCHHHHHHHHHHHH
Confidence 422 48999998 67 89999998887643
No 315
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.93 E-value=1.1e-05 Score=79.86 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=58.0
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh---CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ---NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCRN 84 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~---~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~~ 84 (352)
..+..+|++|+|+|++.+ .....+...+. .+.|+++|+||+|+.+... .+...+.+...+.+ ++.+||++
T Consensus 117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~vSA~~ 191 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKN 191 (535)
T ss_dssp HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC---EEECCC--
T ss_pred HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc---eEEEecCc
Confidence 356789999999999754 22222333332 4589999999999986543 33444444444554 99999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q psy15351 85 PNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 85 ~~~~gi~~L~~~i~~~~~~~ 104 (352)
+ .|+++|++.+.+.+...
T Consensus 192 g--~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 192 G--DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp -----CTTHHHHHHHHHTCT
T ss_pred c--cCHHHHHHHHHHHHhcc
Confidence 9 99999999998877653
No 316
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.93 E-value=4.5e-06 Score=75.41 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=55.8
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc----hHHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH----ESLIEEKVRKEQSHISEVIFTNCRNPNC 87 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~----~~~~~~~~~~~~~~~~~v~~iSa~~~~~ 87 (352)
..+|++++|+|+.+. ..+..+...+. .+.|+++|+||+|+..... ...+.+ ..+.+ ++.+||+++
T Consensus 79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~---vi~~SA~~g-- 148 (272)
T 3b1v_A 79 QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVP---VVATSALKQ-- 148 (272)
T ss_dssp TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSC---EEECBTTTT--
T ss_pred CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCC---EEEEEccCC--
Confidence 479999999999763 11222222222 6899999999999864321 222322 33665 999999999
Q ss_pred CCHHHHHHHHHHHhh
Q psy15351 88 KGVQKILPTLQHISD 102 (352)
Q Consensus 88 ~gi~~L~~~i~~~~~ 102 (352)
.|++++++++.+.+.
T Consensus 149 ~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 149 TGVDQVVKKAAHTTT 163 (272)
T ss_dssp BSHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999877554
No 317
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.93 E-value=5.8e-06 Score=74.45 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=58.0
Q ss_pred hhccCEEEEEEcCCCCCCCcCHHHH-HHHhCC-CCEEEEEEcccCCCccchHHHHHHH-HhhcCCCCcEEEeecCCCCCC
Q psy15351 12 LKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQNI-RPMVLVLNKRDLINSKHESLIEEKV-RKEQSHISEVIFTNCRNPNCK 88 (352)
Q Consensus 12 i~~aD~vl~VvDar~p~~~~~~~l~-~~l~~~-k~~ilVlNK~Dl~~~~~~~~~~~~~-~~~~~~~~~v~~iSa~~~~~~ 88 (352)
..++|++++|+|++++. .+..+. ++...+ .|+++|+||+|+.+........+.+ +..+.+ ++++||+++ .
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~---~~~~Sa~~g--~ 151 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP---VIPTNAKKG--E 151 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC---EEECBGGGT--B
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc---EEEEEeCCC--C
Confidence 37899999999998641 122222 222345 9999999999986543211112222 234665 999999999 9
Q ss_pred CHHHHHHHHHHHhhh
Q psy15351 89 GVQKILPTLQHISDN 103 (352)
Q Consensus 89 gi~~L~~~i~~~~~~ 103 (352)
|++++++.+.+.+..
T Consensus 152 gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 152 GVEELKRMIALMAEG 166 (271)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999877654
No 318
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.93 E-value=5.8e-06 Score=80.82 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=36.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCC-CCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKK-GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~-~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi 231 (352)
+.++|+++|.+|+|||||+|+|++..... -........+|+|.+.........+..+.++||||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 46899999999999999999999732000 001234567788887654333334557999999996
No 319
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.16 E-value=1.3e-06 Score=74.84 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=37.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+... ......++.+.........+. .+.++||||...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-------PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4579999999999999999999985211 122223332221111111122 456999999754
No 320
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=1.9e-05 Score=68.47 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=56.1
Q ss_pred hhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 12 LKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 12 i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
...+|++++|.|..++.+... ..+.. +.. .+.|+++|.||+||..... .++...+....+.. ++.+||+
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~---~~e~SAk 185 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK---FIETSAA 185 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE---EEECBTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE---EEEEeCC
Confidence 456899999999876432211 11222 221 3689999999999975322 22222222334444 8899999
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy15351 84 NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~ 102 (352)
++ .|++++++++.+.+.
T Consensus 186 ~g--~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 186 VQ--HNVKELFEGIVRQVR 202 (211)
T ss_dssp TT--BSHHHHHHHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHH
Confidence 99 999999999876554
No 321
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.92 E-value=1.4e-05 Score=73.62 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=40.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCc--EEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL--IYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~--~~l~DtPGi~~ 233 (352)
...++|+++|.+|||||||+|++.+.. .....++||.+.........+.. +.++||||...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC-------CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC-------CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 467999999999999999999998621 12334455554433222223333 55999999754
No 322
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.92 E-value=9.3e-06 Score=80.43 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=35.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeee-----eEEec---CCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMS-----QVKIS---EKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~-----~~~~~---~~~~~~l~DtPGi~~ 233 (352)
...++|+++|.||||||||+|++++.... ....++.|.+..... .+... .+..+.++||||...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH
Confidence 35689999999999999999999973221 122223332222100 01111 134689999999543
No 323
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.91 E-value=3.1e-05 Score=74.61 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCC-------CCCcCHHHHHHHh-CC-CCEEEEEEcccCCCc----cc----hHHHHH
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMP-------FTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINS----KH----ESLIEE 65 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p-------~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~----~~----~~~~~~ 65 (352)
+....+...+..+|++|+|+|++++ +.........++. .+ +++++|+||+|+.+. +. .++..+
T Consensus 96 ~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~ 175 (435)
T 1jny_A 96 DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 175 (435)
T ss_dssp THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHH
Confidence 3455677889999999999999975 3222222222222 34 468999999999873 11 233344
Q ss_pred HHHhhcCCC--CcEEEeecCCCCCCCHH
Q psy15351 66 KVRKEQSHI--SEVIFTNCRNPNCKGVQ 91 (352)
Q Consensus 66 ~~~~~~~~~--~~v~~iSa~~~~~~gi~ 91 (352)
+++..++.. .+++++||+++ .|+.
T Consensus 176 ~~~~~~~~~~~~~~i~iSA~~g--~~v~ 201 (435)
T 1jny_A 176 FMRSYGFNTNKVRFVPVVAPSG--DNIT 201 (435)
T ss_dssp HHHHTTCCCTTCEEEECBTTTT--BTTT
T ss_pred HHHHcCCCcCCceEEEeecccC--cccc
Confidence 444444321 25899999999 9886
No 324
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.91 E-value=2.4e-05 Score=69.60 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=59.9
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCHH-HH----HHHh-CCCCEEEEEEcccCCCccchHHHHHHH--------------
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNHL-LQ----QSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV-------------- 67 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~~-l~----~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~-------------- 67 (352)
+.+.+.. +++++|+|+.......+.. .. .... .+.|.++|+||+|+.+.....+..+++
T Consensus 132 ~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 210 (262)
T 1yrb_A 132 LMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDP 210 (262)
T ss_dssp HHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccc
Confidence 4456667 9999999987543322211 00 1111 468999999999998754322221111
Q ss_pred --------------HhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhcc
Q psy15351 68 --------------RKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMT 105 (352)
Q Consensus 68 --------------~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~ 105 (352)
.+.+. ..+++.+||+++ +|+++|+++|.+.++..+
T Consensus 211 ~~~~~~~~~l~~~~~~~~~-~~~~~~~SA~~~--~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 211 SMQGLMAYKMCSMMTEVLP-PVRVLYLSAKTR--EGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp SHHHHHHHHHHHHHHHHSC-CCCCEECCTTTC--TTHHHHHHHHHHHHHHHC
T ss_pred cccchhHhHHHHHHHHhcC-cccceEEEecCc--ccHHHHHHHHHHHhcccc
Confidence 22221 114899999999 999999999998877543
No 325
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.91 E-value=5.6e-06 Score=79.08 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=43.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCC--c---e-e-----cCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGK--A---V-P-----VGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~--~---~-~-----~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
...++|+++|.+|+|||||+|+|++....... . . . ....+|+|.+.........+..+.++||||...
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 45689999999999999999999862000000 0 0 0 011467776654322333446799999999764
No 326
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.89 E-value=5.3e-06 Score=84.74 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=64.0
Q ss_pred hccCEEEEEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhc----CCCCcEEEeecCCCC
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ----SHISEVIFTNCRNPN 86 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~----~~~~~v~~iSa~~~~ 86 (352)
..+|+|++|+|++.++...+. .+.+.+. .++|+++|+||+|++++.... ........ ..+.+++++||+++
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G- 262 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDI- 262 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEES-
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEeccccc-
Confidence 688999999999988776665 4666554 578999999999999765321 11111111 12336888999999
Q ss_pred CCCHHHHHHHHHH---Hhhhcc
Q psy15351 87 CKGVQKILPTLQH---ISDNMT 105 (352)
Q Consensus 87 ~~gi~~L~~~i~~---~~~~~~ 105 (352)
.|+++|++.+.+ .+++.+
T Consensus 263 -~GvdeL~eaI~~e~~ffpe~P 283 (772)
T 3zvr_A 263 -DGKKDITAALAAERKFFLSHP 283 (772)
T ss_dssp -SSSEEHHHHHHHHHHHHHHCT
T ss_pred -ccchhHHHHHHHHHHhccCCc
Confidence 999999999876 465544
No 327
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.88 E-value=7.6e-06 Score=74.38 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=59.5
Q ss_pred HHHHHhhccCEEE-EEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhh--cC--CCCcEEE
Q psy15351 7 DIEKHLKNVDIVI-EVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKE--QS--HISEVIF 79 (352)
Q Consensus 7 ~~~~~i~~aD~vl-~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~--~~~~v~~ 79 (352)
.+...+..+|.++ +|+|+..++...+. .+.+.+. .+.|+++|+||+|+.++... +.+.++.. .. .+.+++.
T Consensus 154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~ 231 (299)
T 2aka_B 154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVN 231 (299)
T ss_dssp HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCC
T ss_pred HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEEC
Confidence 3556777887555 79999887655442 3444443 57899999999999875431 12222221 11 1225778
Q ss_pred eecCCCCCCCHHHHHHHHHH
Q psy15351 80 TNCRNPNCKGVQKILPTLQH 99 (352)
Q Consensus 80 iSa~~~~~~gi~~L~~~i~~ 99 (352)
+||+++ .|++++++++.+
T Consensus 232 ~SA~~~--~gi~~l~~~l~~ 249 (299)
T 2aka_B 232 RSQKDI--DGKKDITAALAA 249 (299)
T ss_dssp CCCBCT--TSCBCHHHHHHH
T ss_pred CChhhc--cccccHHHHHHH
Confidence 999999 999999998875
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.88 E-value=2.5e-05 Score=66.38 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh------CCCCEEEEEEcccCCCccch----H----HHHHHHHhhc--C
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHE----S----LIEEKVRKEQ--S 72 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~----~----~~~~~~~~~~--~ 72 (352)
...+..+|++|+|+|++++.......+..++. .+.|+++|.||+|+.+.+.. . ...+.+.+.. .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 46678899999999999863222233333332 47899999999999874321 1 1122222211 0
Q ss_pred CCCcEEEeecCCCCCCCHHHHHHHHHHH
Q psy15351 73 HISEVIFTNCRNPNCKGVQKILPTLQHI 100 (352)
Q Consensus 73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~~ 100 (352)
...+++.+||++ .|++++++.+.+.
T Consensus 170 ~~~~~~e~Sa~~---~~v~~~f~~l~~~ 194 (196)
T 3llu_A 170 LHLSFYLTSIYD---HSIFEAFSKVVQK 194 (196)
T ss_dssp SCEEEEEECTTS---THHHHHHHHHHHH
T ss_pred CCcceEEEEech---hhHHHHHHHHHHH
Confidence 011478899987 6899998887643
No 329
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.88 E-value=3e-06 Score=82.35 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=42.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC--CCCCC-----------------Cceec------CCCCCceeEeeeeEEecCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKG-----------------KAVPV------GPKAGVTRSVMSQVKISEKP 221 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~-----------------~~~~~------~~~pg~T~~~~~~~~~~~~~ 221 (352)
..++|+++|.+|+|||||+|+|++. .+... ..+.+ ...+|.|.+.........+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 4689999999999999999999852 00000 00000 11367787665433333455
Q ss_pred cEEEEeCCCCC
Q psy15351 222 LIYILDTPGIS 232 (352)
Q Consensus 222 ~~~l~DtPGi~ 232 (352)
.+.++||||..
T Consensus 86 ~~~iiDtPGh~ 96 (458)
T 1f60_A 86 QVTVIDAPGHR 96 (458)
T ss_dssp EEEEEECCCCT
T ss_pred eEEEEECCCcH
Confidence 79999999964
No 330
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.88 E-value=1e-05 Score=77.16 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCc----------eecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKA----------VPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~----------~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
+.++|+++|.+|+|||||+|+|++........ .......|.|.+.........+..+.++||||..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 35789999999999999999998521000000 0011246778775432222344679999999964
No 331
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.87 E-value=1.2e-05 Score=69.96 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=34.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCC--cEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~--~~~l~DtPGi~~ 233 (352)
+.++|+++|.+|||||||++++..... .....++-|.. .........+. .+.++||+|-..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f----~~~~~~Tig~d--~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF----DNTYQATIGID--FLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC----C------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC----CCCcCCccceE--EEEEEEEecceEEEEEEEECCCchh
Confidence 458999999999999999999985321 11122222221 11111112222 467999999654
No 332
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.86 E-value=1e-05 Score=75.50 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.....++++|.||+||||++|.|.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999999963
No 333
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.86 E-value=5.5e-05 Score=80.06 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=67.1
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCC-EEEEEEcccCCCccc-h----HHHHHHHHhhcCC--C
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRP-MVLVLNKRDLINSKH-E----SLIEEKVRKEQSH--I 74 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~~~-~----~~~~~~~~~~~~~--~ 74 (352)
..+.+...+..+|++|+|+|++++......+....+. .+.| +++|+||+|+.+... . .+..+++.+.++. .
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~ 451 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD 451 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence 4556777889999999999999876555444434333 4677 789999999986322 1 2334445444431 1
Q ss_pred CcEEEeecCCCCC------CCHHHHHHHHHHHhh
Q psy15351 75 SEVIFTNCRNPNC------KGVQKILPTLQHISD 102 (352)
Q Consensus 75 ~~v~~iSa~~~~~------~gi~~L~~~i~~~~~ 102 (352)
.+++++||+++.. .|+.+|++.|.+.++
T Consensus 452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred eeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 2599999999710 257888888887665
No 334
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.85 E-value=1.1e-05 Score=79.71 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=38.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCC--CCCC-C-------ceec------CCCCCceeEeeeeEEecCCCcEEEEeCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSH--MKKG-K-------AVPV------GPKAGVTRSVMSQVKISEKPLIYILDTPG 230 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-~-------~~~~------~~~pg~T~~~~~~~~~~~~~~~~l~DtPG 230 (352)
...+|+++|.+|+|||||+|+|+... +... . ...+ ....|+|...........+..+.++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45789999999999999999998521 1000 0 0111 12455555433222233455799999999
Q ss_pred CCCC
Q psy15351 231 ISLP 234 (352)
Q Consensus 231 i~~~ 234 (352)
....
T Consensus 92 ~~df 95 (529)
T 2h5e_A 92 HEDF 95 (529)
T ss_dssp STTC
T ss_pred ChhH
Confidence 8653
No 335
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.84 E-value=1.3e-05 Score=77.21 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...++|+++|.+|+|||||+|+|++
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHh
Confidence 3458999999999999999999985
No 336
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.84 E-value=9.4e-06 Score=77.47 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
.+.++|+++|.+|+|||||+|+|++.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 45789999999999999999999973
No 337
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.81 E-value=8.9e-06 Score=76.74 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=38.0
Q ss_pred EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
+|+++|.+|+|||||+|+|+ .+|+|.+.........+..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH--------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 89999999999999999996 245565544333333455799999999864
No 338
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.80 E-value=6.3e-06 Score=81.29 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=61.4
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccc--hHHHHHHHHhh--cC-CCCcEEEeecC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKH--ESLIEEKVRKE--QS-HISEVIFTNCR 83 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~--~~-~~~~v~~iSa~ 83 (352)
..+..+|++|+|+|++++......+....+. .+.|+++|+||+|+.+... ....+..+... .+ ...+++++||+
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 3567899999999999876654444444444 6789999999999975432 11111111000 00 01258889999
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy15351 84 NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~ 102 (352)
++ .|+++|++++..+++
T Consensus 151 tG--~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 151 TG--ENMMALAEATIALAE 167 (537)
T ss_dssp SS--CSSHHHHHHHHHHHT
T ss_pred CC--CCchhHHHHHHHhhh
Confidence 99 999999999987765
No 339
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.79 E-value=4.2e-05 Score=78.01 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHH-HHHh-CCCCEEEEEEcccCCCcc-----c---hH----HHHHH----H
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQ-NIRPMVLVLNKRDLINSK-----H---ES----LIEEK----V 67 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~-~~k~~ilVlNK~Dl~~~~-----~---~~----~~~~~----~ 67 (352)
+.+...+.++|++|+|+|+..+.+..+..+. +.+. .++|+++|+||+|+.+.. . .. ...+. +
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l 271 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL 271 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999887665443332 3443 478999999999997543 1 11 11111 2
Q ss_pred Hhh-c-----CCCCcEEEeecC--------------CCCCCCHHHHHHHHHHHhhh
Q psy15351 68 RKE-Q-----SHISEVIFTNCR--------------NPNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 68 ~~~-~-----~~~~~v~~iSa~--------------~~~~~gi~~L~~~i~~~~~~ 103 (352)
... + ....+++++||+ ++ .|+++|.+.+.+.+..
T Consensus 272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~--~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG--TGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT--SSHHHHHHHHHHHHHH
T ss_pred HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc--cCHHHHHHHHHHHHHH
Confidence 111 1 111258999999 88 9999999998876643
No 340
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=3.4e-05 Score=73.68 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=40.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCC--CcEEEEeCCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--PLIYILDTPGISLP 234 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~~l~DtPGi~~~ 234 (352)
.++++++|.+|+|||||+|+|.+..+.. .......|+.++.....+....+ ..+.++|+||+...
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g--~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEG--EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccC--CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 3569999999999999999999853211 11222346666654322222211 25899999999764
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.78 E-value=3.4e-05 Score=66.30 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=54.0
Q ss_pred HHhhccCEEEEEEcCCCCCCCcC---HHHHHHHh------CCCCEEEEEEcccCCCccchHHHHHHHHhh----------
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRN---HLLQQSVQ------NIRPMVLVLNKRDLINSKHESLIEEKVRKE---------- 70 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~---~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~---------- 70 (352)
..+..+|++|+|+|++++..... ..+...+. .+.|+++|+||+|+.+........+.+.+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 153 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA 153 (214)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchh
Confidence 35789999999999976211111 11222221 357999999999998765443333332210
Q ss_pred -------------cCC-------------CCcEEEeecCCCC----CCCHHHHHHHHHHH
Q psy15351 71 -------------QSH-------------ISEVIFTNCRNPN----CKGVQKILPTLQHI 100 (352)
Q Consensus 71 -------------~~~-------------~~~v~~iSa~~~~----~~gi~~L~~~i~~~ 100 (352)
... ...++.+||+++. +.|+++++++|.+.
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000 1147789998861 36899999888654
No 342
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.77 E-value=2.1e-05 Score=78.96 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCC-------CCCcCHHHHHHHh-CC-CCEEEEEEcccCCCcc--c----hHHHHHHH
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMP-------FTGRNHLLQQSVQ-NI-RPMVLVLNKRDLINSK--H----ESLIEEKV 67 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p-------~~~~~~~l~~~l~-~~-k~~ilVlNK~Dl~~~~--~----~~~~~~~~ 67 (352)
+..+.+...+..+|++|+|+|++.+ ......+...++. .+ +|+++|+||+|+++.. . .....+++
T Consensus 257 ~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l 336 (611)
T 3izq_1 257 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 336 (611)
T ss_dssp CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence 3456677788999999999999864 1122222222232 34 5599999999998732 1 22333344
Q ss_pred HhhcCC--CCcEEEeecCCCCCCCHHHH
Q psy15351 68 RKEQSH--ISEVIFTNCRNPNCKGVQKI 93 (352)
Q Consensus 68 ~~~~~~--~~~v~~iSa~~~~~~gi~~L 93 (352)
.+.+.. ..+++++||+++ .|+.++
T Consensus 337 ~~~g~~~~~~~~i~vSA~tG--~gI~el 362 (611)
T 3izq_1 337 VDIGFFEDNINWVPISGFSG--EGVYKI 362 (611)
T ss_dssp HHHTCCGGGCEEEECCTTTC--TTTSSC
T ss_pred HhhcccccCccEEeeecccC--CCcccc
Confidence 444432 125899999999 998754
No 343
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.76 E-value=4e-05 Score=74.54 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCC-------CcCHHHHHHHh-CCCC-EEEEEEcccCCCc----cc----hHHHHHH
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFT-------GRNHLLQQSVQ-NIRP-MVLVLNKRDLINS----KH----ESLIEEK 66 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~-------~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~----~~----~~~~~~~ 66 (352)
..+.+...+..+|++|+|+|++++.. ....+...++. .+.| +++|+||+|+.+. +. ..+..++
T Consensus 134 f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~ 213 (467)
T 1r5b_A 134 YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMF 213 (467)
T ss_dssp --------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHH
Confidence 34556677899999999999998631 11122222222 5666 8999999999642 11 1234444
Q ss_pred HHhh-cCC---CCcEEEeecCCCCCCCHHHH
Q psy15351 67 VRKE-QSH---ISEVIFTNCRNPNCKGVQKI 93 (352)
Q Consensus 67 ~~~~-~~~---~~~v~~iSa~~~~~~gi~~L 93 (352)
+++. ++. ..+++.+||+++ .|+.++
T Consensus 214 l~~~~g~~~~~~~~~i~vSA~~g--~~i~~l 242 (467)
T 1r5b_A 214 LRRVAGYNSKTDVKYMPVSAYTG--QNVKDR 242 (467)
T ss_dssp HHHHHCCCHHHHEEEEECBTTTT--BTTSSC
T ss_pred HHHhcCCCccCCceEEecccccc--cccccc
Confidence 5444 432 125899999999 998753
No 344
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.75 E-value=1.4e-05 Score=81.46 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=37.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-CC---ceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-GK---AVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-~~---~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
....+|+++|.+|+|||||+|+|.... +.. .. ...+.+ ..|.|...........+..+.|+||||...
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 345789999999999999999998310 000 00 001111 456666544332333455799999999865
No 345
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.75 E-value=6.2e-05 Score=63.82 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=55.2
Q ss_pred hhccCEEEEEEcCCCCCCCcC-HHHHH-HHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeecC
Q psy15351 12 LKNVDIVIEVHDSRMPFTGRN-HLLQQ-SVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNCR 83 (352)
Q Consensus 12 i~~aD~vl~VvDar~p~~~~~-~~l~~-~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa~ 83 (352)
...+|.+++|.|..++.+... ..+.. +.. .+.|+++|.||+|+..... ..+...+....+. +++.+||+
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~---~~~e~SA~ 154 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX---KFIETSAA 154 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EEEECBTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC---ceEEeccc
Confidence 456899999999876532221 11211 211 3689999999999975322 1222222223344 38899999
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy15351 84 NPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~~~~ 102 (352)
++ .|++++++++.+.+.
T Consensus 155 ~g--~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 155 VQ--HNVKELFEGIVRQVR 171 (192)
T ss_dssp TT--BSHHHHHHHHHHHHH
T ss_pred cC--CCHHHHHHHHHHHHH
Confidence 99 999999999876553
No 346
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.74 E-value=2.2e-05 Score=75.00 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=29.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV 211 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~ 211 (352)
...++|+++|.+|+|||||+|+|++... ........+|.|.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~ 50 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWT---DTHSEELRRGITIKI 50 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCC---C--CGGGGSCSSSCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCcc---ccChhhhcCCcEEEE
Confidence 4568999999999999999999996321 111222346666653
No 347
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.73 E-value=1.1e-05 Score=77.82 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=37.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC--CCCCCC-----------------------ceecCCCCCceeEeeeeEEecCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS--HMKKGK-----------------------AVPVGPKAGVTRSVMSQVKISEKP 221 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~--~~~~~~-----------------------~~~~~~~pg~T~~~~~~~~~~~~~ 221 (352)
+.++|+++|.+|+|||||+|+|+.. .+.... .......+|+|.+.........+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4589999999999999999999852 010000 000112578888765433334456
Q ss_pred cEEEEeCCCCCC
Q psy15351 222 LIYILDTPGISL 233 (352)
Q Consensus 222 ~~~l~DtPGi~~ 233 (352)
.+.++||||...
T Consensus 85 ~~~iiDtpG~~~ 96 (435)
T 1jny_A 85 FFTIIDAPGHRD 96 (435)
T ss_dssp EEEECCCSSSTT
T ss_pred EEEEEECCCcHH
Confidence 799999999754
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.69 E-value=2.3e-05 Score=73.44 Aligned_cols=25 Identities=44% Similarity=0.541 Sum_probs=22.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+....|+++|.||||||||+|.|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999963
No 349
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.69 E-value=1.6e-05 Score=77.82 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=58.1
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhcC------CCCcEEEeecC
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQS------HISEVIFTNCR 83 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~------~~~~v~~iSa~ 83 (352)
.+..+|++++|+|++++......+....+. .+.|+++++||+|+.+.+. +...+.+.+.+. ...+++++||+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 467899999999999876555544444443 6889999999999975321 001111111110 01258999999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy15351 84 NPNCKGVQKILPTLQH 99 (352)
Q Consensus 84 ~~~~~gi~~L~~~i~~ 99 (352)
++ .|+++|++++..
T Consensus 150 tG--~gI~eLle~I~~ 163 (501)
T 1zo1_I 150 AG--TGIDELLDAILL 163 (501)
T ss_dssp TC--TTCTTHHHHTTT
T ss_pred ec--cCcchhhhhhhh
Confidence 99 999999998864
No 350
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.69 E-value=2e-05 Score=78.92 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHhhccCEEEEEEcCCCCC-------CCcCHHHHHHHh-CCCC-EEEEEEcccCCCc--cchHHH----HHHH-HhhcCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPF-------TGRNHLLQQSVQ-NIRP-MVLVLNKRDLINS--KHESLI----EEKV-RKEQSH 73 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~-------~~~~~~l~~~l~-~~k~-~ilVlNK~Dl~~~--~~~~~~----~~~~-~~~~~~ 73 (352)
..+..+|++|+|+|++.+. .....+...++. .+.| +|+|+||+|+++. +..... .+++ +..++.
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~ 353 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFK 353 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCC
Confidence 3467899999999998753 223333333333 4565 8999999999862 222222 2333 223332
Q ss_pred C--CcEEEeecCCCCCCCHH--------------HHHHHHHHHhh
Q psy15351 74 I--SEVIFTNCRNPNCKGVQ--------------KILPTLQHISD 102 (352)
Q Consensus 74 ~--~~v~~iSa~~~~~~gi~--------------~L~~~i~~~~~ 102 (352)
. .+++++||+++ .|+. .|++.|.++.+
T Consensus 354 ~~~~~ii~iSA~~G--~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 354 TSNVHFVPISAISG--TNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGEEEEEECSSSC--SSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccceEEEEEecccC--cccccccccccccccchHHHHHHHHhhcc
Confidence 1 15899999999 9997 78888877655
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.69 E-value=0.00016 Score=61.71 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=61.4
Q ss_pred hccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeecCCCCC
Q psy15351 13 KNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNCRNPNC 87 (352)
Q Consensus 13 ~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa~~~~~ 87 (352)
..+|.+++|+|+..+....+..+..++. .+.|.++|.||+|+.+.... ....+.+.+... ...++++||+++
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sal~~-- 183 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG-DVQVETFSSLKK-- 183 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS-CEEEEECBTTTT--
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC-CCceEEEeecCC--
Confidence 5789999999998876544444555554 67899999999999875432 222333322221 124678999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q psy15351 88 KGVQKILPTLQHISDNM 104 (352)
Q Consensus 88 ~gi~~L~~~i~~~~~~~ 104 (352)
.|++++++.|.+..+..
T Consensus 184 ~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999998876543
No 352
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=70.91 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
.++++++|.+|+|||||+|+|++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 378999999999999999999973
No 353
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.68 E-value=2.6e-05 Score=75.73 Aligned_cols=88 Identities=9% Similarity=-0.012 Sum_probs=55.8
Q ss_pred hHHHHHHHHhhccCEEEEEEcCCCCCCC-------cCHHHHHHHh-CCCC-EEEEEEcccCCC--ccch----HHHHHHH
Q psy15351 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTG-------RNHLLQQSVQ-NIRP-MVLVLNKRDLIN--SKHE----SLIEEKV 67 (352)
Q Consensus 3 ~~~~~~~~~i~~aD~vl~VvDar~p~~~-------~~~~l~~~l~-~~k~-~ilVlNK~Dl~~--~~~~----~~~~~~~ 67 (352)
+..+.+...+..+|++|+|+|++++... ...+...++. .+.| +++|+||+|+.+ ++.. +++.+++
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence 4456677889999999999999865311 1112222222 4555 899999999984 2221 2333344
Q ss_pred HhhcCC--CCcEEEeecCCCCCCCHHH
Q psy15351 68 RKEQSH--ISEVIFTNCRNPNCKGVQK 92 (352)
Q Consensus 68 ~~~~~~--~~~v~~iSa~~~~~~gi~~ 92 (352)
+..++. ..+++++||+++ .|+.+
T Consensus 177 ~~~g~~~~~~~~i~vSA~~g--~nv~~ 201 (458)
T 1f60_A 177 KKVGYNPKTVPFVPISGWNG--DNMIE 201 (458)
T ss_dssp HHHTCCGGGCCEEECCTTTC--BTTTB
T ss_pred HHcCCCccCceEEEeecccC--cCccc
Confidence 444432 125999999999 88763
No 354
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.66 E-value=4.8e-05 Score=72.69 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=27.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV 211 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~ 211 (352)
.+.++|+++|.+++|||||+|+|++... ........+|.|.+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~ 48 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWT---DRHSEELRRGISIRL 48 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCC---CC-------CCCCCC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc---ccCcccccCCcEEEe
Confidence 3568999999999999999999996321 111222346666653
No 355
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=0.00018 Score=71.04 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=41.0
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK 58 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~ 58 (352)
..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+....
T Consensus 97 ~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 97 EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 45677899999999999999876544444444444 578999999999997643
No 356
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.64 E-value=1.4e-05 Score=71.28 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=61.0
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-C-----CCCEEEEEE-cccCCCccchHHHH---------HHHHh
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-N-----IRPMVLVLN-KRDLINSKHESLIE---------EKVRK 69 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~-----~k~~ilVlN-K~Dl~~~~~~~~~~---------~~~~~ 69 (352)
+.++..+..+|++|+|+|+.. +......+.+++. . .+|.++|+| |+|+.+.. ...++ +.+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 334557788999999999985 3333333333332 1 568888888 99998543 22211 12322
Q ss_pred hcCC---CCcEEEeecCCCCCCCHHHHHHHHHHHhhhc
Q psy15351 70 EQSH---ISEVIFTNCRNPNCKGVQKILPTLQHISDNM 104 (352)
Q Consensus 70 ~~~~---~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~ 104 (352)
.+.. +.+ +.+||+++ .|++++++.|.+.++..
T Consensus 175 ~~~~~~~~~~-~~~SA~~~--~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNN-RAEGSNQD--DQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCT-TCCHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecC-cccccccH--HHHHHHHHHHHHHHHhC
Confidence 2221 112 67899999 99999999999888754
No 357
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.62 E-value=0.00011 Score=68.73 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hc----CCCCcEEEee
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQ----SHISEVIFTN 81 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~----~~~~~v~~iS 81 (352)
...+.+|++++|+|+..+... ..+...+ ...|.++|+||+|+.+........+.+.. .. ....+++++|
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~i-l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDEL--QGIKRGI-IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp HHHTTCSEEEEEECCC---------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred hHHhhCCEEEEEEcCCcchhH--HHhHHHH-HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 346789999999998765321 1121112 35688999999999754322112222211 11 0012589999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++|+++|.+.++
T Consensus 260 A~~g--~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 260 ARSG--EGISEMWDKMKDFQD 278 (349)
T ss_dssp TTTC--TTHHHHHHHHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999987764
No 358
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.61 E-value=6.9e-05 Score=62.86 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=57.0
Q ss_pred HhhccCEEEEEEcCCCCCCCcC---HHHHHHHh--CCCCEEEEEEcccCCCccchH----HHHHHHHh-hcCC-CCcEEE
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRN---HLLQQSVQ--NIRPMVLVLNKRDLINSKHES----LIEEKVRK-EQSH-ISEVIF 79 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~---~~l~~~l~--~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~-~~~~-~~~v~~ 79 (352)
.+..+|++++|+|.+++..+.+ ..+..+.. .+.|+++|.||+|+.+..... ...+.+.+ .+.. ..+++.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred HccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 4677999999999987632221 11222222 378999999999997654322 11122211 1221 013788
Q ss_pred eecCCCCCC-CHHHHHHHHHHHhhh
Q psy15351 80 TNCRNPNCK-GVQKILPTLQHISDN 103 (352)
Q Consensus 80 iSa~~~~~~-gi~~L~~~i~~~~~~ 103 (352)
+||+++ . |+++|++.|.+.+..
T Consensus 156 ~Sa~~~--~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 156 VNATEE--SDALAKLRKTIINESLN 178 (184)
T ss_dssp CCTTSC--CHHHHHHHHHHHHHHHC
T ss_pred EecccC--chhHHHHHHHHHHHHhc
Confidence 999999 7 999999988776654
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.60 E-value=6.2e-05 Score=65.04 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=54.4
Q ss_pred cCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc--cchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHH
Q psy15351 15 VDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS--KHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQ 91 (352)
Q Consensus 15 aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~ 91 (352)
++.+++|+|+..+.. ....+.. .+.|.++|+||+|+.+. ....+..+.+++.+. ..+++.+||+++ .|++
T Consensus 130 ~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~i~~~Sa~~g--~gi~ 202 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINP-RAKIIEMDLKTG--KGFE 202 (221)
T ss_dssp CSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCT-TSEEEECBTTTT--BTHH
T ss_pred cCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCC-CCeEEEeecCCC--CCHH
Confidence 456777999876531 1111111 35788999999999754 234455555544331 125899999999 9999
Q ss_pred HHHHHHHHHhhh
Q psy15351 92 KILPTLQHISDN 103 (352)
Q Consensus 92 ~L~~~i~~~~~~ 103 (352)
+++++|.+.+..
T Consensus 203 ~l~~~l~~~~~~ 214 (221)
T 2wsm_A 203 EWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999876643
No 360
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.59 E-value=3e-05 Score=77.47 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=33.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCC--CCCCC-cee------cCCCCCceeEeee-eEEec--CC--CcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSH--MKKGK-AVP------VGPKAGVTRSVMS-QVKIS--EK--PLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~--~~~~~-~~~------~~~~pg~T~~~~~-~~~~~--~~--~~~~l~DtPGi~~ 233 (352)
-.+++++|.+|+|||||+++|+... +.... ... .....|.|..... .+.+. ++ ..+.|+||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999997420 00000 001 1113566654332 11111 22 2578999999865
No 361
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.58 E-value=0.00022 Score=72.40 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCC
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLI 55 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~ 55 (352)
....+...+..+|.+++|+|+..........+...+. .+.|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 3456778889999999999998776544444444443 688999999999997
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.58 E-value=0.00015 Score=64.31 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHh-------CCCCEEEEEEcccCCCccch--------HHHHHHHHhhcCCCC
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-------NIRPMVLVLNKRDLINSKHE--------SLIEEKVRKEQSHIS 75 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 75 (352)
....+|++|+|+|+.. +...+..+.+++. .+.|+++|.||+|+.+.... ....+.+.+.+..
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~-- 178 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR-- 178 (247)
T ss_dssp HTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC--
T ss_pred cCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe--
Confidence 3499999999999974 4333334334433 16799999999999764321 1123333344544
Q ss_pred cEEEeecCC-----CCCCCHHHHHHHHHHHhhh
Q psy15351 76 EVIFTNCRN-----PNCKGVQKILPTLQHISDN 103 (352)
Q Consensus 76 ~v~~iSa~~-----~~~~gi~~L~~~i~~~~~~ 103 (352)
++++++.. + .|+.+|++.|.+++++
T Consensus 179 -~~~~~~~~~~~~~~--~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 179 -VCAFDNRATGREQE--AQVEQLLGMVEGLVLE 208 (247)
T ss_dssp -EEECCTTCCHHHHH--HHHHHHHHHHHHHHHH
T ss_pred -EEEEeCCCCccccH--HHHHHHHHHHHHHHHH
Confidence 66666554 4 7899999999988875
No 363
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.57 E-value=0.00013 Score=66.88 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh------CCCCEEEEEEcccCCCccch--------HHHHHHHHhhcC
Q psy15351 8 IEKHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ------NIRPMVLVLNKRDLINSKHE--------SLIEEKVRKEQS 72 (352)
Q Consensus 8 ~~~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~------~~k~~ilVlNK~Dl~~~~~~--------~~~~~~~~~~~~ 72 (352)
....+..+|++|+|+|+.++.+..+. .+..++. .+.|+++|+||+|+.+.+.. .+..++.+..|.
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 34566899999999999886543322 1122221 37899999999999874332 222333333443
Q ss_pred CCCcEEEeecCCCCCCCHHHHHHHH
Q psy15351 73 HISEVIFTNCRNPNCKGVQKILPTL 97 (352)
Q Consensus 73 ~~~~v~~iSa~~~~~~gi~~L~~~i 97 (352)
+..+++.+||++. |+.+++..+
T Consensus 154 ~~~~~~~tSa~~~---~i~e~~~~i 175 (307)
T 3r7w_A 154 PNLIGFPTSIWDE---SLYKAWSQI 175 (307)
T ss_dssp CSCEEEECCTTSS---HHHHHHHHH
T ss_pred CCeEEEEeeecCC---hHHHHHHHH
Confidence 1135899999884 555554444
No 364
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.57 E-value=0.00016 Score=73.89 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCC--CCCC-C---ceecCC------CCCceeEeeeeEEecCC-------CcEEEEe
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSH--MKKG-K---AVPVGP------KAGVTRSVMSQVKISEK-------PLIYILD 227 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~--~~~~-~---~~~~~~------~pg~T~~~~~~~~~~~~-------~~~~l~D 227 (352)
...+|+++|.+|+|||||+++|.... +... . ...+.+ ..|.|...........+ ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999997421 0000 0 001111 35666654322222222 4689999
Q ss_pred CCCCCC
Q psy15351 228 TPGISL 233 (352)
Q Consensus 228 tPGi~~ 233 (352)
|||..+
T Consensus 89 TPG~~d 94 (704)
T 2rdo_7 89 TPGHVD 94 (704)
T ss_pred CCCccc
Confidence 999865
No 365
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.55 E-value=0.00033 Score=60.23 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=60.3
Q ss_pred HHHH-HHhhccCEEEEEEcCCCCCC-CcCHHH---HHHHh-----CCCCEEEEEEcc-cCCCccchHHHHHHHHhhcCCC
Q psy15351 6 KDIE-KHLKNVDIVIEVHDSRMPFT-GRNHLL---QQSVQ-----NIRPMVLVLNKR-DLINSKHESLIEEKVRKEQSHI 74 (352)
Q Consensus 6 ~~~~-~~i~~aD~vl~VvDar~p~~-~~~~~l---~~~l~-----~~k~~ilVlNK~-Dl~~~~~~~~~~~~~~~~~~~~ 74 (352)
|.+| .+.+++|.||||||+.+.-- ..-.++ ...+. .+.|++|+.||. |+...-...++.+.+.=.....
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R 195 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH 195 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCC
Confidence 3444 47799999999999976521 122333 22232 356899999996 6754444455555442111110
Q ss_pred C-cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 75 S-EVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 75 ~-~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
. .|..+||.+| +|+.+-++||.+.+.
T Consensus 196 ~W~Iq~csA~TG--eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 196 PWLVQDTEAETL--TGFLNGIEWILEEVE 222 (227)
T ss_dssp CEEEEEEETTTC--TTHHHHHHHHTTTTT
T ss_pred CEEEEEeECCCC--cCHHHHHHHHHHHHH
Confidence 0 3778999999 999999999976654
No 366
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.55 E-value=4.4e-05 Score=76.29 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCC--CCCCC-cee------cCCCCCceeEeeee-EEec--CC--CcEEEEeCCCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSH--MKKGK-AVP------VGPKAGVTRSVMSQ-VKIS--EK--PLIYILDTPGISL 233 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~--~~~~~-~~~------~~~~pg~T~~~~~~-~~~~--~~--~~~~l~DtPGi~~ 233 (352)
-.+|+++|.+++|||||+++|+... +.... ... .....|.|...... +.+. ++ ..+.|+||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3579999999999999999997521 00000 001 11245667654331 2121 12 2578999999854
No 367
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.53 E-value=3.4e-05 Score=75.04 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=35.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCC--CCC-------------CC----ceec------CCCCCceeEeeeeEEecCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSH--MKK-------------GK----AVPV------GPKAGVTRSVMSQVKISEK 220 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~--~~~-------------~~----~~~~------~~~pg~T~~~~~~~~~~~~ 220 (352)
...++|+++|.+|+|||||+|+|+... +.. ++ .+.+ ....|.|.+.........+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999996310 000 00 0011 1246777776433333345
Q ss_pred CcEEEEeCCCCCC
Q psy15351 221 PLIYILDTPGISL 233 (352)
Q Consensus 221 ~~~~l~DtPGi~~ 233 (352)
..+.++||||...
T Consensus 121 ~~~~iiDtPGh~~ 133 (467)
T 1r5b_A 121 RRFSLLDAPGHKG 133 (467)
T ss_dssp EEEEECCCCC---
T ss_pred eEEEEEECCCcHH
Confidence 6799999999754
No 368
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=0.00014 Score=69.47 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=23.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
+-.++|+++|.+|||||||+|+|++.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCC
Confidence 34578999999999999999999974
No 369
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.50 E-value=0.00011 Score=68.38 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hcC--C--CCcEEEeec
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQS--H--ISEVIFTNC 82 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~--~--~~~v~~iSa 82 (352)
....+|++++|+|+..+.... .+.... .+.|.++|+||+|+.+......+.+.+++ ... . ..+++++||
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 242 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ--GIKKGL-MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA 242 (341)
T ss_dssp HHTTCSEEEEEECC------C--CCCHHH-HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBG
T ss_pred HHHhCCEEEEEEeCCccHHHH--HHHHhh-hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeC
Confidence 468999999999986542111 011111 24678999999999875433333333322 111 0 125889999
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy15351 83 RNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~ 102 (352)
+++ .|+++|+++|.+.+.
T Consensus 243 ~~g--~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 243 LEK--RGIDEIWHAIIDFKT 260 (341)
T ss_dssp GGT--BSHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHH
Confidence 999 999999999987654
No 370
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.48 E-value=0.00043 Score=70.56 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK 58 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~ 58 (352)
..+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...+
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc
Confidence 34667788999999999999876655444444443 689999999999998653
No 371
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.48 E-value=0.00029 Score=71.74 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=40.7
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK 58 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~ 58 (352)
...+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...+
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC
Confidence 345677889999999999999876554444433333 688999999999997643
No 372
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.45 E-value=0.00019 Score=68.41 Aligned_cols=66 Identities=32% Similarity=0.335 Sum_probs=38.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
....++++|.+|+|||||+|+|.+..--......++. +.+|+... .+.....+++.++|+||+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~-v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERH-PYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCE-EEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEE-eccccccCCeeehHhhcccch
Confidence 4568999999999999999999983211111111222 12233211 111112246899999999754
No 373
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.44 E-value=9.2e-05 Score=67.73 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=21.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
+-.++|+++|.+|||||||+|+|.+.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 34588999999999999999999863
No 374
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.42 E-value=9.1e-05 Score=78.45 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=38.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCC--CCCC--------ceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHM--KKGK--------AVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGIS 232 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~--~~~~--------~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~ 232 (352)
.+.++|+++|.+|+|||||+|+|++... .... .......+|+|.+.........+..+.++||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 4568999999999999999999985200 0000 00122356777765432222344679999999964
No 375
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.42 E-value=0.00047 Score=68.26 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCcc
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSK 58 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~ 58 (352)
..++.+.+.-+|.+|+|+||..+....-..+.+.+. .+.|.++++||+|....+
T Consensus 114 ~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 114 SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 356788999999999999999887766555555444 789999999999986543
No 376
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.00031 Score=61.58 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCHHHH-HHHh-----CCCCEEEEEEcccCCCccchH--------HHHHHHHhhcCCCC
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQ-QSVQ-----NIRPMVLVLNKRDLINSKHES--------LIEEKVRKEQSHIS 75 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~~l~-~~l~-----~~k~~ilVlNK~Dl~~~~~~~--------~~~~~~~~~~~~~~ 75 (352)
.....+|++|+|+|+.. +...+.... .+.. ..+|+++|+||+|+.+..... ...+..++.+..
T Consensus 108 ~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~-- 184 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR-- 184 (239)
T ss_dssp HTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS--
T ss_pred hcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE--
Confidence 34456799999999874 333332222 2221 246999999999998764433 223333344544
Q ss_pred cEEEeecCCC---CCCCHHHHHHHHHHHhhh
Q psy15351 76 EVIFTNCRNP---NCKGVQKILPTLQHISDN 103 (352)
Q Consensus 76 ~v~~iSa~~~---~~~gi~~L~~~i~~~~~~ 103 (352)
++++++..+ ...++.+|+..+.+++.+
T Consensus 185 -~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 -YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 667766532 015788888888777654
No 377
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.36 E-value=9.4e-06 Score=77.28 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHH-HHHHHhhh
Q psy15351 42 IRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILP-TLQHISDN 103 (352)
Q Consensus 42 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~-~i~~~~~~ 103 (352)
.+|+++|+||+|+...+....+.+.+...+. +++++||+.+ .|+.+|++ .+.++++.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~---~vv~iSA~~e--~~l~~L~~~~l~~~~p~ 271 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGY---IVIPTSAAAE--LTLRKAAKAGFIEYIPG 271 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTC---EEEEECHHHH--HHHHSCSSSCCCCSCC-
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCC---cEEEEeccch--hhHHHHHhhhhhhhcCC
Confidence 5999999999998743223344444433233 4999999998 77776654 44444443
No 378
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.33 E-value=0.00099 Score=67.95 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS 57 (352)
Q Consensus 5 ~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~ 57 (352)
...+...+..+|.+|+|+|+..+.......+...+. .+.|+++|+||+|+...
T Consensus 96 ~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 96 TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 345677889999999999999876544444333333 67899999999998754
No 379
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.32 E-value=0.0003 Score=71.04 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCCc
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLINS 57 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~ 57 (352)
+..++.+.+.-+|.+|+|+||..+....-..+.+.+. .+.|.++++||+|....
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 4567888999999999999999988776666655544 67889999999997654
No 380
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.30 E-value=0.00015 Score=72.55 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+.++|+++|.+|+|||||+|+|++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999986
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.26 E-value=5.7e-05 Score=65.25 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=28.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCce
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVT 208 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T 208 (352)
....++++|.+|||||||+|.|.+......+.+.+...|++|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 457899999999999999999986311112344455555543
No 382
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.25 E-value=0.00085 Score=56.82 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=58.7
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
.....+|.+++|+|+.++.+..+. .+...+. ...|+++|+||+|+..... .........+.++. ++.+||
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~---~~d~Sa 149 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS---FIETSA 149 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe---EEEEeC
Confidence 345688999999999865432221 1111121 3678999999999975322 23333444444544 778999
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy15351 83 RNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~~~ 102 (352)
+++ .|++++++.+.+.+.
T Consensus 150 l~~--~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 150 LDS--TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTC--TTHHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHHHH
Confidence 999 999999999887654
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.21 E-value=0.00019 Score=62.08 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
...+|+++|.+|||||||+|.+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999863
No 384
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.16 E-value=0.0001 Score=68.97 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=55.1
Q ss_pred HHh-hccCEEEEEEcCCCCCCCcCH-HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHhhc----CCCCcEEEeec
Q psy15351 10 KHL-KNVDIVIEVHDSRMPFTGRNH-LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRKEQ----SHISEVIFTNC 82 (352)
Q Consensus 10 ~~i-~~aD~vl~VvDar~p~~~~~~-~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~----~~~~~v~~iSa 82 (352)
..+ ..+++|++|+|+..++...+. .+.+.+. .+.|+++|+||+|+.++... +.+.+.... ..+.+++.+||
T Consensus 162 ~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA 239 (353)
T 2x2e_A 162 QFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQ 239 (353)
T ss_dssp HHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCH
T ss_pred HHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCc
Confidence 444 445678888898766554433 2444443 57899999999999875431 112222211 11224778999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy15351 83 RNPNCKGVQKILPTLQH 99 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~ 99 (352)
+++ .|++++++++.+
T Consensus 240 ~~~--~~i~~l~~~l~~ 254 (353)
T 2x2e_A 240 KDI--DGKKDITAALAA 254 (353)
T ss_dssp HHH--HTTCCHHHHHHH
T ss_pred ccc--cccccHHHHHHH
Confidence 999 999999988865
No 385
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.13 E-value=0.00041 Score=65.05 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=39.0
Q ss_pred cCEEEEEEcC-CCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHH----HHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351 15 VDIVIEVHDS-RMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLI----EEKVRKEQSHISEVIFTNCRNPNCKG 89 (352)
Q Consensus 15 aD~vl~VvDa-r~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~----~~~~~~~~~~~~~v~~iSa~~~~~~g 89 (352)
+|++++++|. +.++...+..+.+.+..+.|+|+|+||+|+.....+... .+.+...+++ ++.+||+++ .+
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~---~~~~Sa~~~--~~ 220 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK---IYHLPDAES--DE 220 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CC---SCCCC--------
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---EEeCCCcCC--Cc
Confidence 3578888875 555544443444444357899999999999876544332 2223233444 888999988 66
No 386
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.08 E-value=0.001 Score=65.78 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=63.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhCCC--CC------CC--------CceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRSSH--MK------KG--------KAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~~~--~~------~~--------~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi 231 (352)
--+|+|+|....|||||..+|+-.. +. .+ .........|.|.........+.+..+.|+||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 4579999999999999999986210 00 00 00111223455554433333445668999999999
Q ss_pred CCCCCCCHHHHHHHHHHh---hhhhhccchhhhhHhHHhhhcCCCCCcccccccCCCCCccHHHHHHHHHHHhc
Q psy15351 232 SLPRIDNLECGMRLAACA---TLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKK 302 (352)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~---~i~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~g 302 (352)
.+... +.+..++ ++. .+.+..-+.+.--..++....+.....+.-.-+++.+..+..+.+.++..+++
T Consensus 111 vDF~~-Ev~raL~--~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 111 QDFSE-DTYRVLT--AVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GGCSH-HHHHHHH--SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHH--hcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 87521 2222221 111 11122222222222233333332222222222334455678888888887776
No 387
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.08 E-value=0.00024 Score=74.03 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...+|+++|.+|+|||||+|+|..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~ 41 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQ 41 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999985
No 388
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.07 E-value=0.0025 Score=57.47 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=61.2
Q ss_pred HHHH-HHhhccCEEEEEEcCCCCCCC-cCHHHH---HHHh-----CCCCEEEEEEcc-cCCCccchHHHHHHHHhhcCCC
Q psy15351 6 KDIE-KHLKNVDIVIEVHDSRMPFTG-RNHLLQ---QSVQ-----NIRPMVLVLNKR-DLINSKHESLIEEKVRKEQSHI 74 (352)
Q Consensus 6 ~~~~-~~i~~aD~vl~VvDar~p~~~-~~~~l~---~~l~-----~~k~~ilVlNK~-Dl~~~~~~~~~~~~~~~~~~~~ 74 (352)
|..| ...+++|.+|+|||+.+..-. .-.++. ..+. .+.|++|+.||. |+...-...++.+.+.=.....
T Consensus 201 RplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r 280 (312)
T 3l2o_B 201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH 280 (312)
T ss_dssp CHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred HHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCC
Confidence 3444 477999999999999765321 112222 2221 467999999974 8865444455555442111111
Q ss_pred C-cEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 75 S-EVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 75 ~-~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
. .|..+||.+| +|+.+-++|+.+.+.
T Consensus 281 ~W~Iq~csA~tG--eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 281 PWLVQDTEAETL--TGFLNGIEWILEEVE 307 (312)
T ss_dssp CEEEEEEETTTC--TTHHHHHHHHHHHSC
T ss_pred cEEEEecccCCC--cCHHHHHHHHHHHHH
Confidence 1 3778999999 999999999987664
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.06 E-value=0.00034 Score=68.34 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHh
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALR 189 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~ 189 (352)
.++..|+++|.|||||||++|.|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999998
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.06 E-value=0.00093 Score=57.68 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCCEEEEEEcccCCCcc--chHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 42 IRPMVLVLNKRDLINSK--HESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 42 ~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++|.++|+||+|+.+.. ...+..+++++.+. ..+++.+||+++ .|++++++++.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g--~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINP-DAEVVLLSLKTM--EGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCT-TSEEEECCTTTC--TTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC--CCHHHHHHHHHHHHH
Confidence 57889999999997542 23444455544321 125899999999 999999999876654
No 391
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.03 E-value=0.00032 Score=62.34 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.7
Q ss_pred cCcceEEEEeCCC---------CCChHHHHHHHhC
Q psy15351 165 EVYNTTVMVVGVP---------NVGKSSIINALRS 190 (352)
Q Consensus 165 ~~~~~~v~i~G~p---------nvGKStliN~l~~ 190 (352)
....++|+++|.| |||||||+|++.+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3567999999999 9999999999996
No 392
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.00 E-value=0.00024 Score=66.42 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=56.4
Q ss_pred HhhccCEEEEEEcCCCCCC--------CcCHH----HHHHHh----CCCCEEEEEEcccCCCc-----------------
Q psy15351 11 HLKNVDIVIEVHDSRMPFT--------GRNHL----LQQSVQ----NIRPMVLVLNKRDLINS----------------- 57 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~--------~~~~~----l~~~l~----~~k~~ilVlNK~Dl~~~----------------- 57 (352)
..++++.+|+|+|..+... .+-.+ +..++. .+.|+++|+||+||...
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~ 292 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCC
Confidence 5688999999999886421 11111 222222 36799999999998521
Q ss_pred cchHHHHHHHHh----hc----CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 58 KHESLIEEKVRK----EQ----SHISEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 58 ~~~~~~~~~~~~----~~----~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
...++..+++.. .. .....++.+||+++ .|++++++++.+.+.
T Consensus 293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--KNVQFVFDAVTDVII 343 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc--hhHHHHHHHHHHHHH
Confidence 122344444431 10 01113778999999 999999998876553
No 393
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.98 E-value=0.00036 Score=70.74 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCC---CCCc---eecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMK---KGKA---VPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISL 233 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~---~~~~---~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~ 233 (352)
...+++++|.+|+|||||+++|.+.... .... ..+.+ ..|.|...+..........+.++||||...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4578999999999999999999842100 0000 00111 234555444333333445689999999764
No 394
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.96 E-value=0.0008 Score=62.01 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=34.9
Q ss_pred EEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
+|.++|..||||||+++.+.+... .......+++-|.... .+...-.+.++||||-...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~-----~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLE-----HFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCE-----EECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeE-----EEccEEEEEEEECCCchhc
Confidence 488999999999999998875210 0001112222232211 1112236899999997654
No 395
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00015 Score=62.04 Aligned_cols=59 Identities=25% Similarity=0.248 Sum_probs=38.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEeeeeEEecCCCcEEEEeCCCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~~l~DtPGi 231 (352)
.+..++++|.+|+|||||++.|.+. .........+.|||.+...- .++..+.++|.+.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~----~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ----NPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH----CTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh----CCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 4567899999999999999999852 11124456777888764321 22334555554443
No 396
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.88 E-value=0.00039 Score=61.61 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHh
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALR 189 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~ 189 (352)
.+...+.+.|.+||||||+++.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 356788999999999999999997
No 397
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.87 E-value=0.0027 Score=53.38 Aligned_cols=86 Identities=17% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHhhccCEEEEEEcCCCCCCCcCH-HHHHHHh----CCCCEEEEEEcccCCCccc--hHHHHHHHHhhcCCCCcEEEeec
Q psy15351 10 KHLKNVDIVIEVHDSRMPFTGRNH-LLQQSVQ----NIRPMVLVLNKRDLINSKH--ESLIEEKVRKEQSHISEVIFTNC 82 (352)
Q Consensus 10 ~~i~~aD~vl~VvDar~p~~~~~~-~l~~~l~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~~~~v~~iSa 82 (352)
.....+|.+++|.|..+..+..+. .+...+. ...|+++|+||+|+.+... .....+...+.++. ++.+||
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~---~ld~Sa 173 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS---FIETSA 173 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE---EEECCT
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE---EEEEeC
Confidence 345678999999998765322111 1111111 3578999999999975322 23333344444444 778999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy15351 83 RNPNCKGVQKILPTLQHI 100 (352)
Q Consensus 83 ~~~~~~gi~~L~~~i~~~ 100 (352)
+++ .|++++++.+.+.
T Consensus 174 ld~--~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDS--TNVEAAFQTILTE 189 (191)
T ss_dssp TTC--TTHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHHHHH
Confidence 999 9999999988654
No 398
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.83 E-value=0.00046 Score=64.70 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=55.4
Q ss_pred HhhccCEEEEEEcCCCCC---------CCcC---HHHHHHHh----CCCCEEEEEEcccCCCc-----------------
Q psy15351 11 HLKNVDIVIEVHDSRMPF---------TGRN---HLLQQSVQ----NIRPMVLVLNKRDLINS----------------- 57 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~---------~~~~---~~l~~~l~----~~k~~ilVlNK~Dl~~~----------------- 57 (352)
..++++.+|+|+|..+.. .... ..+..++. .+.|+++|+||+||..+
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~ 300 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 300 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCC
Confidence 457899999999998631 1111 11222222 36799999999998521
Q ss_pred -cchHHHHHHHH----hhc----CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 58 -KHESLIEEKVR----KEQ----SHISEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 58 -~~~~~~~~~~~----~~~----~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
...++..+++. ... .....++.+||+++ .|++++++++.+.+.
T Consensus 301 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 301 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--ENIRLVFRDVKDTIL 352 (362)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc--hhHHHHHHHHHHHHH
Confidence 12333444331 110 01113778999999 999999998876543
No 399
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.81 E-value=0.0018 Score=59.28 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCCCEEEEEEcccCCCccchHHHHHHHHhhcCCCCcEEEeecCCCCCCCHHHHHHHHHHHhhhccccccccccceeEEEe
Q psy15351 41 NIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120 (352)
Q Consensus 41 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (352)
...| .+|++|.|..+++ .++..++.+++ ++.++..+. +.+..|..++...+......|
T Consensus 79 ~~~P-~IIltrg~~~pee----lie~A~~~~IP---VL~T~~~ts--~~~~~l~~~l~~~~~~~~~~H------------ 136 (314)
T 1ko7_A 79 PETP-AIIVTRDLEPPEE----LIEAAKEHETP---LITSKIATT--QLMSRLTTFLEHELARTTSLH------------ 136 (314)
T ss_dssp TTCC-CEEECTTCCCCHH----HHHHHHHTTCC---EEECCSCHH--HHHHHHHHHHHHHTCEEEEEE------------
T ss_pred CCCC-EEEEeCCCCCCHH----HHHHHHHCCCe---EEEECCchh--HHHHHHHHHHHHhhccceeee------------
Confidence 3556 6799999987554 44444555776 888887777 777777777665433211000
Q ss_pred ccCCCCchhHHHHHhhhhcccCCCCCCCcchhhhhccccccccccCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 121 g~~nvgksslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
|. -. .-.+.-+++.|.+|+||||+.+.|..
T Consensus 137 ~~-------------------------------------~v---~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 137 GV-------------------------------------LV---DVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp SE-------------------------------------EE---EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EE-------------------------------------EE---EECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 00 00 11346799999999999999999986
No 400
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.68 E-value=0.00099 Score=62.30 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=52.4
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCH--HHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHHHh----hcCCCCcEE
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNH--LLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKVRK----EQSHISEVI 78 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~--~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~~v~ 78 (352)
..+...+.++|++|+|+|+......... .+.+.+. .++|+++|+||+|++++... +.+.+.. .+. +++
T Consensus 164 ~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~---~~~ 238 (360)
T 3t34_A 164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKY---PWV 238 (360)
T ss_dssp HHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSS---CCE
T ss_pred HHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccC---CeE
Confidence 4466788999999999986532222122 2223332 47899999999999876431 2222221 133 478
Q ss_pred EeecCCCCCCCHHHHHHH
Q psy15351 79 FTNCRNPNCKGVQKILPT 96 (352)
Q Consensus 79 ~iSa~~~~~~gi~~L~~~ 96 (352)
.+|++++ .++++....
T Consensus 239 ~v~~~s~--~~i~~~~~~ 254 (360)
T 3t34_A 239 GVVNRSQ--ADINKNVDM 254 (360)
T ss_dssp EECCCCH--HHHHTTCCH
T ss_pred EEEECCh--HHhccCCCH
Confidence 8999988 777654433
No 401
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.67 E-value=0.0017 Score=64.29 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHhhccCEEEEEEcCCCC-CCCcCHHHHHHHh-CCCCEEEEEEcccCCCccchHHHHHHH
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMP-FTGRNHLLQQSVQ-NIRPMVLVLNKRDLINSKHESLIEEKV 67 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p-~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~ 67 (352)
+.+...+..+|++|+|+|+..+ .......+.+.++ .+.|+++|+||+|+++++.+....+.+
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 3456678999999999999874 3333333444443 457899999999999876655554444
No 402
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.65 E-value=0.002 Score=59.67 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=51.7
Q ss_pred HhhccCEEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccc-hHHHHHHHHhh----cC---C-CCcEEEee
Q psy15351 11 HLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ESLIEEKVRKE----QS---H-ISEVIFTN 81 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~----~~---~-~~~v~~iS 81 (352)
..+.+|++++|+|+..+... ..+...+ ...+.++|+||+|+.+... .....+.+... .. . ..+++++|
T Consensus 165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i-~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~S 241 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDEL--QGIKKGI-FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTIS 241 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTH-HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEB
T ss_pred HHhhCCEEEEEEcCCCcccH--HHHHHHH-hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEe
Confidence 45789999999998543110 0010001 1235688889999875332 11222222211 10 0 12589999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh
Q psy15351 82 CRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 82 a~~~~~~gi~~L~~~i~~~~~ 102 (352)
|+++ .|+++|++.|.++.+
T Consensus 242 al~g--~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 242 GLHG--KGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTTT--BSHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHH
Confidence 9999 999999999988765
No 403
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.63 E-value=0.0073 Score=61.66 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHHHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh-CCCCEEEEEEcccCCC
Q psy15351 4 GLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ-NIRPMVLVLNKRDLIN 56 (352)
Q Consensus 4 ~~~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~-~~k~~ilVlNK~Dl~~ 56 (352)
+..++.+++.-+|.+|+|+||..+....-..+.+... .+.|.++++||+|...
T Consensus 98 F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 98 FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 3457788999999999999999888766555554433 6889999999999754
No 404
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.56 E-value=0.00049 Score=66.05 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|+++|.|||||||+++.|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
No 405
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.56 E-value=0.0017 Score=62.01 Aligned_cols=83 Identities=6% Similarity=0.083 Sum_probs=41.7
Q ss_pred cCEEEEEEcCC-CCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchH----HHHHHHHhhcCCCCcEEEeecCCCCCCC
Q psy15351 15 VDIVIEVHDSR-MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHES----LIEEKVRKEQSHISEVIFTNCRNPNCKG 89 (352)
Q Consensus 15 aD~vl~VvDar-~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~----~~~~~~~~~~~~~~~v~~iSa~~~~~~g 89 (352)
++++|++++.+ ..+...+..+.+.+..+.|+|+|+||+|++.+..+. .+.+.+...++. ++.+|+.++ .+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~---~~~~sa~~~--~~ 213 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK---IYEFPETDD--EE 213 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCC---CCCCC--------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCe---EEeCCCCCC--cC
Confidence 45677777654 445444433444444578999999999998765443 334445555665 788999988 88
Q ss_pred HHHHHHHHHHHhh
Q psy15351 90 VQKILPTLQHISD 102 (352)
Q Consensus 90 i~~L~~~i~~~~~ 102 (352)
++++...+.+.+|
T Consensus 214 v~~~~~~l~~~iP 226 (418)
T 2qag_C 214 ENKLVKKIKDRLP 226 (418)
T ss_dssp -----------CC
T ss_pred HHHHHHHHHhhCC
Confidence 8877666665444
No 406
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.52 E-value=0.0045 Score=52.91 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=38.1
Q ss_pred hccCEEEEEEcCC-CCCCCc--CHHHHHHHh-------CCCCEEEEEEcccCCCccchHHHHHHHH--------hhcCCC
Q psy15351 13 KNVDIVIEVHDSR-MPFTGR--NHLLQQSVQ-------NIRPMVLVLNKRDLINSKHESLIEEKVR--------KEQSHI 74 (352)
Q Consensus 13 ~~aD~vl~VvDar-~p~~~~--~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--------~~~~~~ 74 (352)
..+|++|+|+|+. ++.+.. ...+.+++. .+.|+++|+||+|+.+......+.+.+. ..+.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~-- 158 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK-- 158 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc--
Confidence 4489999999998 432221 122333322 3789999999999987755433322221 1122
Q ss_pred CcEEEeecCCC
Q psy15351 75 SEVIFTNCRNP 85 (352)
Q Consensus 75 ~~v~~iSa~~~ 85 (352)
.++.+||+++
T Consensus 159 -~~~~~Sa~~~ 168 (218)
T 1nrj_B 159 -SLNEVERKIN 168 (218)
T ss_dssp -HHHC------
T ss_pred -cccccccccc
Confidence 3667888877
No 407
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.50 E-value=0.0037 Score=57.55 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHhhccCEEEEEEcCCCCCCCcCHHHHHHHh------CCCCEEEEEEcccCCCccchH----HHHH----HHHhhcC--
Q psy15351 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQ------NIRPMVLVLNKRDLINSKHES----LIEE----KVRKEQS-- 72 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar~p~~~~~~~l~~~l~------~~k~~ilVlNK~Dl~~~~~~~----~~~~----~~~~~~~-- 72 (352)
......++.+|+|+|+++.+...-..+.+++. .+.|+++|.||+||.+++... .... .+.+.+.
T Consensus 67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 35678999999999999862111122322221 467999999999998764321 1111 1222111
Q ss_pred CCCcEEEeecCCCCCCCHHHHHHHHHH
Q psy15351 73 HISEVIFTNCRNPNCKGVQKILPTLQH 99 (352)
Q Consensus 73 ~~~~v~~iSa~~~~~~gi~~L~~~i~~ 99 (352)
....++.+||++ .++.+.+..+.+
T Consensus 147 ~~i~f~eTSAkd---~nV~eAFs~iv~ 170 (331)
T 3r7w_B 147 VQVSFYLTSIFD---HSIYEAFSRIVQ 170 (331)
T ss_dssp CCEEEECCCSSS---SHHHHHHHHHHT
T ss_pred cCceEEEeccCC---CcHHHHHHHHHH
Confidence 011367789986 578887776654
No 408
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0032 Score=52.57 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHhhccCEEEEEEcCC-CCCCCc--CHHHHHHHh-------CCCCEEEEEEcccCCCccchHHHHHHHH
Q psy15351 9 EKHLKNVDIVIEVHDSR-MPFTGR--NHLLQQSVQ-------NIRPMVLVLNKRDLINSKHESLIEEKVR 68 (352)
Q Consensus 9 ~~~i~~aD~vl~VvDar-~p~~~~--~~~l~~~l~-------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~ 68 (352)
...+..+|++++|+|+. ++.+.. ...+..++. .+.|+++|+||+|+.+......+.+.+.
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 34456699999999998 321111 112222221 2789999999999988766555555543
No 409
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.35 E-value=0.008 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHh
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALR 189 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~ 189 (352)
+-..|+|+|.+++|||+|+|.|.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34678899999999999999775
No 410
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.30 E-value=0.0037 Score=62.68 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhCC
Q psy15351 170 TVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~~ 191 (352)
.++++|.+|+|||||+++|.|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999985
No 411
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0023 Score=59.78 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=52.6
Q ss_pred HhhccCEEEEEEcCCC-------C-CCCcCHH----HHHHHh----CCCCEEEEEEcccCCCcc----------------
Q psy15351 11 HLKNVDIVIEVHDSRM-------P-FTGRNHL----LQQSVQ----NIRPMVLVLNKRDLINSK---------------- 58 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~-------p-~~~~~~~----l~~~l~----~~k~~ilVlNK~Dl~~~~---------------- 58 (352)
....++.+|+|+|... . -...-.+ +..+.. .+.|+++|+||+||..+.
T Consensus 203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~ 282 (354)
T 2xtz_A 203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQ 282 (354)
T ss_dssp GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCC
T ss_pred HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccc
Confidence 4678999999999861 1 1111112 222222 357999999999984211
Q ss_pred -------chHHHHHHHHhh-------c------CCCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 59 -------HESLIEEKVRKE-------Q------SHISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 59 -------~~~~~~~~~~~~-------~------~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
..++..+++.+. . .....++.+||+++ .|++++++++.+.+
T Consensus 283 ~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~--~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 283 PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ--KLVKKTFKLVDETL 343 (354)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH--HHHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc--hhHHHHHHHHHHHH
Confidence 012233332221 0 01012578999999 99999998887654
No 412
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.16 E-value=0.0023 Score=64.52 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=39.9
Q ss_pred EEEEeCCCCCChHHHHHHHhCCC--CCCC----CceecCC------CCCceeEeeeeEEecCCCcEEEEeCCCCCCC
Q psy15351 170 TVMVVGVPNVGKSSIINALRSSH--MKKG----KAVPVGP------KAGVTRSVMSQVKISEKPLIYILDTPGISLP 234 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~~~--~~~~----~~~~~~~------~pg~T~~~~~~~~~~~~~~~~l~DtPGi~~~ 234 (352)
+|+|+|....|||||..+|.... +.+. ...++.+ ..|.|...........+..+.|+||||-.+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999986320 1000 0111111 1255555433233345567999999998864
No 413
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.01 E-value=0.0051 Score=58.29 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 77 VIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 77 v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
++++||+++ .|+++++..+.+.+.
T Consensus 361 ~~~TSA~d~--~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 361 PHFTCAVDT--ENIRRVFNDCRDIIQ 384 (402)
T ss_dssp EEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred EEEEEeecC--cCHHHHHHHHHHHHH
Confidence 568999999 999999998876553
No 414
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.00 E-value=0.0052 Score=56.62 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=54.6
Q ss_pred HhhccCEEEEEEcCCC------CCCCcC--H----HHHHHHh----CCCCEEEEEEcccCCCcc----------------
Q psy15351 11 HLKNVDIVIEVHDSRM------PFTGRN--H----LLQQSVQ----NIRPMVLVLNKRDLINSK---------------- 58 (352)
Q Consensus 11 ~i~~aD~vl~VvDar~------p~~~~~--~----~l~~~l~----~~k~~ilVlNK~Dl~~~~---------------- 58 (352)
....++.+|+|+|... .....+ . .+..++. .+.|+++++||+||..+.
T Consensus 187 yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~ 266 (327)
T 3ohm_A 187 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP 266 (327)
T ss_dssp GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSC
T ss_pred HhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCC
Confidence 5688999999997641 011111 1 1222332 367999999999985421
Q ss_pred --chHHHHHHHHhh----c---CCCCcEEEeecCCCCCCCHHHHHHHHHHHhh
Q psy15351 59 --HESLIEEKVRKE----Q---SHISEVIFTNCRNPNCKGVQKILPTLQHISD 102 (352)
Q Consensus 59 --~~~~~~~~~~~~----~---~~~~~v~~iSa~~~~~~gi~~L~~~i~~~~~ 102 (352)
..++..+++.+. . ...-.++++||++. .|++.++..+.+.+-
T Consensus 267 ~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~--~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 267 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT--ENIRFVFAAVKDTIL 317 (327)
T ss_dssp SSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--HHHHHHHHHHHHHHH
Confidence 233444443211 1 00013678999999 999999988876543
No 415
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.81 E-value=0.0025 Score=59.05 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHHH-HhhccCEEEEEEcCCCCC------CCcC--H----HHHHHHh----CCCCEEEEEEcccCCCcc----------
Q psy15351 6 KDIEK-HLKNVDIVIEVHDSRMPF------TGRN--H----LLQQSVQ----NIRPMVLVLNKRDLINSK---------- 58 (352)
Q Consensus 6 ~~~~~-~i~~aD~vl~VvDar~p~------~~~~--~----~l~~~l~----~~k~~ilVlNK~Dl~~~~---------- 58 (352)
+..|. ....++.+|+|+|..+.. ...+ . .+..++. .+.|+++++||+||..+.
T Consensus 175 R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~f 254 (340)
T 4fid_A 175 RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIF 254 (340)
T ss_dssp HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTC
T ss_pred cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhh
Confidence 44443 568999999999986210 0111 1 1222332 467999999999985321
Q ss_pred -------chHHHHHHHHhhc--------C----------------CCCcEEEeecCCCCCCCHHHHHHHHHHHh
Q psy15351 59 -------HESLIEEKVRKEQ--------S----------------HISEVIFTNCRNPNCKGVQKILPTLQHIS 101 (352)
Q Consensus 59 -------~~~~~~~~~~~~~--------~----------------~~~~v~~iSa~~~~~~gi~~L~~~i~~~~ 101 (352)
..++..+++.+.. . ..-.++++||++. .+++.+++.+.+.+
T Consensus 255 p~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt--~nv~~vF~~v~~~I 326 (340)
T 4fid_A 255 PEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDG--SNIKRVFMLAVDVI 326 (340)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCH--HHHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCc--HHHHHHHHHHHHHH
Confidence 1233334433222 0 0013678999999 99999888877544
No 416
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.79 E-value=0.013 Score=53.33 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=42.1
Q ss_pred ccCEEEEEEcCCC-CCCCcCHHHHHHHhCCCCEEEEEEcccCCCccch----HHHHHHHHhhcCCCCcEEEeecCCCCCC
Q psy15351 14 NVDIVIEVHDSRM-PFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE----SLIEEKVRKEQSHISEVIFTNCRNPNCK 88 (352)
Q Consensus 14 ~aD~vl~VvDar~-p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~----~~~~~~~~~~~~~~~~v~~iSa~~~~~~ 88 (352)
++++++++++... .+...+..+.+.+....++++|+||+|+..+..+ ++..+++++.++. ++.+||+++
T Consensus 126 ra~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~---~~e~Sa~~~--- 199 (301)
T 2qnr_A 126 RVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK---IYHLPDAES--- 199 (301)
T ss_dssp CCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCC---CCCCC-------
T ss_pred hhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCe---EEecCCccc---
Confidence 3455666665322 2322222222223245689999999999875432 2334445555665 888999875
Q ss_pred CHHHHHHHHHHHh
Q psy15351 89 GVQKILPTLQHIS 101 (352)
Q Consensus 89 gi~~L~~~i~~~~ 101 (352)
|+++++..+.+.+
T Consensus 200 ~v~e~f~~l~~~i 212 (301)
T 2qnr_A 200 DEDEDFKEQTRLL 212 (301)
T ss_dssp -----CHHHHHHH
T ss_pred cccHHHHHHHHHh
Confidence 6777776665544
No 417
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.68 E-value=0.0054 Score=51.32 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
+++++|.+|+|||||++.|.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 418
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.65 E-value=0.0056 Score=58.68 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCCCCCCCCce-----------------ecCCCCCceeEeeeeEEec----------
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAV-----------------PVGPKAGVTRSVMSQVKIS---------- 218 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~~~~~~~~~-----------------~~~~~pg~T~~~~~~~~~~---------- 218 (352)
.++..|+++|.+||||||+++.|...-...+..+ ..+...|..........-.
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Q ss_pred ---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHhhhhhhccchhhhhHhHHhhhcCC
Q psy15351 219 ---EKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272 (352)
Q Consensus 219 ---~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~il~~~~~~ 272 (352)
.+..+.++||||.... +.+....+.....+.. ++.+++|++..
T Consensus 178 a~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~--------pd~vlLVvDA~ 223 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIH--------PHEVILVIDGT 223 (443)
T ss_dssp HHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHC--------CSEEEEEEEGG
T ss_pred HHhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhc--------CceEEEEEeCC
No 419
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0083 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+-.++++|.+|+|||||++.|.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999986
No 420
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.38 E-value=0.0068 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
-.++++|.+|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 421
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.38 E-value=0.013 Score=60.92 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHhhccCEEEEEEcCCCCCCCcCHHHHHH-HhCCCCEEEEEEcccCC
Q psy15351 6 KDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQS-VQNIRPMVLVLNKRDLI 55 (352)
Q Consensus 6 ~~~~~~i~~aD~vl~VvDar~p~~~~~~~l~~~-l~~~k~~ilVlNK~Dl~ 55 (352)
..+...+..+|.+|+|+|+.++.......+... ...+.|+++|+||+|+.
T Consensus 113 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 113 SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 346677899999999999998766554443332 23678999999999986
No 422
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.35 E-value=0.01 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.||+||||+++.|.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999986
No 423
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.27 E-value=0.005 Score=51.96 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=26.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCCceecCCCCCceeEe
Q psy15351 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV 211 (352)
Q Consensus 171 v~i~G~pnvGKStliN~l~~~~~~~~~~~~~~~~pg~T~~~ 211 (352)
|.++|.+||||+||++.|.... ...-.-..+.|||.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~----~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY----PDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC----TTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhC----CCCeEEEEEEeccCC
Confidence 7899999999999999998421 111223456677765
No 424
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.26 E-value=0.031 Score=56.96 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=34.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhCCC-----CCC-CCceec------CCCCCceeEeee-eEEecC------CCcEEEEeCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSSH-----MKK-GKAVPV------GPKAGVTRSVMS-QVKISE------KPLIYILDTP 229 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~~-----~~~-~~~~~~------~~~pg~T~~~~~-~~~~~~------~~~~~l~DtP 229 (352)
-+|+|+|....|||||..+|.... .+. ....++ ....|.|..... .+.+.. +..+.|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999886310 000 000011 224455554432 122211 2358899999
Q ss_pred CCCCC
Q psy15351 230 GISLP 234 (352)
Q Consensus 230 Gi~~~ 234 (352)
|-.+.
T Consensus 94 GHvDF 98 (709)
T 4fn5_A 94 GHVDF 98 (709)
T ss_dssp SCTTC
T ss_pred CCccc
Confidence 99875
No 425
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.23 E-value=0.0098 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..++++|.+|+||||+++.|.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 355789999999999999999986
No 426
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.22 E-value=0.043 Score=51.29 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCEEEEEEccc--CCCc---cchHHHHHHHHhhcCCCCcEEEeecCCC
Q psy15351 42 IRPMVLVLNKRD--LINS---KHESLIEEKVRKEQSHISEVIFTNCRNP 85 (352)
Q Consensus 42 ~k~~ilVlNK~D--l~~~---~~~~~~~~~~~~~~~~~~~v~~iSa~~~ 85 (352)
.+|+++|.||+| +.+. .......++.++.+.. ++++||+..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~---vv~iSAk~E 246 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE---VVVVSARLE 246 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE---EEEECHHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe---EEEeechhH
Confidence 389999999997 4432 2234444444444554 999998875
No 427
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.10 E-value=0.012 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++..++|+|.+|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 428
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.08 E-value=0.012 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+-.++++|.+|+||||+++.|.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999999986
No 429
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.97 E-value=0.047 Score=48.50 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=30.0
Q ss_pred hccCEEEEEEcCCCC-CCCcCHHHHHHHh--CC----CCEEEEEEcccCCCcc
Q psy15351 13 KNVDIVIEVHDSRMP-FTGRNHLLQQSVQ--NI----RPMVLVLNKRDLINSK 58 (352)
Q Consensus 13 ~~aD~vl~VvDar~p-~~~~~~~l~~~l~--~~----k~~ilVlNK~Dl~~~~ 58 (352)
..+|++|+|+|+... +...+..+.+.+. .+ +|+++|+||+|+.+++
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 379999999877542 2222223333332 12 5899999999998765
No 430
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.93 E-value=0.013 Score=55.95 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=44.1
Q ss_pred EEEEEEcCCCCCCCcCHHHHHHHhCCCCEEEEEEcccCCCccchHHHHHHHHh----hcCCCCcEEEeecC
Q psy15351 17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK----EQSHISEVIFTNCR 83 (352)
Q Consensus 17 ~vl~VvDar~p~~~~~~~l~~~l~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~----~~~~~~~v~~iSa~ 83 (352)
++++|+|++.++...+.++.+.+..+.|+|+|+||+|.+++.......+.+++ .|+. ++++|.-
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~---I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQ---IYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCC---CCCCC--
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCc---EEecCCC
Confidence 57888999988877776666666567899999999999987766555555443 3555 8888854
No 431
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.81 E-value=0.016 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
++..++++|.+|+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999863
No 432
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.75 E-value=0.015 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+..|+++|.||+||||+.+.|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999985
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.71 E-value=0.017 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+..++++|.||+||||+.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 434
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.69 E-value=0.017 Score=49.22 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.+|+|||||++.|.+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999999986
No 435
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.68 E-value=0.015 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.+|+|||||++.|.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 455799999999999999999986
No 436
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.66 E-value=0.022 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
..|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999974
No 437
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.54 E-value=0.018 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..++++|.+|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999986
No 438
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.54 E-value=0.02 Score=49.53 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++-.++++|.+|+|||||++.|.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999999986
No 439
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.53 E-value=0.017 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.++++|.+|+||||+++.|.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999986
No 440
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.47 E-value=0.021 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..++++|.+|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 441
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.28 E-value=0.026 Score=45.89 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCChHHHHHHH
Q psy15351 169 TTVMVVGVPNVGKSSIINAL 188 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l 188 (352)
+.|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 442
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.18 E-value=0.036 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+..++++|.||+||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 443
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.18 E-value=0.03 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHh
Q psy15351 168 NTTVMVVGVPNVGKSSIINALR 189 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~ 189 (352)
+..++++|.||+||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 444
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.14 E-value=0.031 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+..|+++|.||+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999973
No 445
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.10 E-value=0.032 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|++.|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 446
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.08 E-value=0.036 Score=46.96 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.1
Q ss_pred cCcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 165 EVYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 165 ~~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+++..|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999986
No 447
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.06 E-value=0.031 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|.++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.02 E-value=0.027 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.+|+|||||++.|.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999987
No 449
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.01 E-value=0.032 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 450
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.00 E-value=0.033 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.++=.++++|..|+|||||++.|.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3455799999999999999999987
No 451
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.97 E-value=0.034 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.7
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
..+..++|+|.+|+|||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4678899999999999999999986
No 452
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.96 E-value=0.039 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+..|+++|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.95 E-value=0.038 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999985
No 454
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.95 E-value=0.032 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.|+++|.||+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 455
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.93 E-value=0.035 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHh
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALR 189 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~ 189 (352)
++-.++++|.+|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 44568999999999999999765
No 456
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.91 E-value=0.034 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.++..|+++|.+|+||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 457
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.91 E-value=0.034 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhCC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~~ 191 (352)
=.++++|.+|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999973
No 458
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.91 E-value=0.041 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
..++.|+++|.||+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 459
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.90 E-value=0.036 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
..|.+.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 460
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.89 E-value=0.03 Score=50.98 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++-.++|+|.+|+|||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4566799999999999999999986
No 461
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.88 E-value=0.038 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
..|.++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 462
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.83 E-value=0.037 Score=48.40 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.+|+|||||++.|.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999986
No 463
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.81 E-value=0.029 Score=47.31 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.++++|.+|+|||||++.|.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 489999999999999999986
No 464
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.78 E-value=0.037 Score=46.67 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...|+++|.||+||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 465
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.76 E-value=0.033 Score=47.93 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999987
No 466
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.74 E-value=0.038 Score=46.30 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.|+++|.||+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999974
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.73 E-value=0.042 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.6
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
+++-.++++|.+|+|||||++.|.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999973
No 468
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.71 E-value=0.043 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 469
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.71 E-value=0.039 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
...|+++|.+|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 470
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.70 E-value=0.037 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
++=.++++|.+|+|||||++.|.+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4556899999999999999999973
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.68 E-value=0.036 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++=.++++|.+|+|||||++.|.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 445689999999999999999987
No 472
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.68 E-value=0.045 Score=45.50 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
..++++|.+|+|||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 473
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.65 E-value=0.042 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++.|+++|.||+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 474
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.65 E-value=0.044 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|+++|.||+||||+...|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 475
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.60 E-value=0.028 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=16.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHh-C
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALR-S 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~-~ 190 (352)
++-.++++|.+|+||||+++.|. +
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999998 6
No 476
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.60 E-value=0.043 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+-.++++|.+|+|||||++.|.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 455689999999999999999997
No 477
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.57 E-value=0.036 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
+.|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999985
No 478
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.55 E-value=0.041 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999997
No 479
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.51 E-value=0.048 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+..|+++|.||+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 480
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.49 E-value=0.047 Score=45.84 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhC
Q psy15351 168 NTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 168 ~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999999985
No 481
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.49 E-value=0.059 Score=44.74 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.9
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.++..|+++|.||+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 482
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.48 E-value=0.042 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhC
Q psy15351 170 TVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 170 ~v~i~G~pnvGKStliN~l~~ 190 (352)
.|.+.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 483
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.47 E-value=0.042 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345689999999999999999997
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.46 E-value=0.041 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
.+-.++++|..|+|||||++.|.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999987
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.44 E-value=0.047 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 455789999999999999999997
No 486
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.44 E-value=0.042 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
++-.++++|.+|+|||||++.|.+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999873
No 487
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.44 E-value=0.045 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|.+|+||||+++.|.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 455799999999999999999986
No 488
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.44 E-value=0.044 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
++|++.|.||+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 489
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.40 E-value=0.048 Score=48.40 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.1
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++-.++++|.+|+|||||++.|.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455799999999999999999997
No 490
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.38 E-value=0.045 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999999987
No 491
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.38 E-value=0.035 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=16.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|.+.|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 492
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.38 E-value=0.046 Score=47.77 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.3
Q ss_pred CcceEEEEeCCCCCChHHHHHHHhC
Q psy15351 166 VYNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 166 ~~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
+++..++++|.+|+||||+++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 493
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.37 E-value=0.035 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
-.++++|..|+|||||++.|.+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 494
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.37 E-value=0.16 Score=44.74 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=28.7
Q ss_pred ccCEEEEEEcCCCCC-CCcCHHHHHHHh---C---CCCEEEEEEcccCCCc
Q psy15351 14 NVDIVIEVHDSRMPF-TGRNHLLQQSVQ---N---IRPMVLVLNKRDLINS 57 (352)
Q Consensus 14 ~aD~vl~VvDar~p~-~~~~~~l~~~l~---~---~k~~ilVlNK~Dl~~~ 57 (352)
.+|++|+|+|...+- ...+..+.+.+. . .+|+++|+||+|+.++
T Consensus 116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999998765432 222223333333 1 2589999999999754
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.36 E-value=0.044 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
++-.++++|..|+|||||++.|.+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4457899999999999999999973
No 496
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.35 E-value=0.052 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++=.++++|..|+|||||++.|.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999999997
No 497
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.34 E-value=0.046 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++..|++.|.||+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 498
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.33 E-value=0.05 Score=48.14 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHhC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~ 190 (352)
++-.++++|..|+|||||++.|.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999999997
No 499
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.28 E-value=0.048 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhC
Q psy15351 169 TTVMVVGVPNVGKSSIINALRS 190 (352)
Q Consensus 169 ~~v~i~G~pnvGKStliN~l~~ 190 (352)
++|+++|.||+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 500
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.28 E-value=0.054 Score=44.20 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHhCC
Q psy15351 167 YNTTVMVVGVPNVGKSSIINALRSS 191 (352)
Q Consensus 167 ~~~~v~i~G~pnvGKStliN~l~~~ 191 (352)
++-.++++|..|+|||||++.|.+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557999999999999999999873
Done!