RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15351
(352 letters)
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 221 bits (564), Expect = 1e-70
Identities = 73/344 (21%), Positives = 137/344 (39%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+R+P + RN +++ ++N +P +++LNK D ++
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN-KPRIMLLNKADKADAAVT 68
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+E + + N N +G+ +I+P + I R
Sbjct: 69 QQWKEHFENQGIR---SLSINSVNG--QGLNQIVPASKEILQEKFDRMRA---------- 113
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
K K I +++G+PNVG
Sbjct: 114 -------------------KGVKPRAI----------------------RALIIGIPNVG 132
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN L K G + G+T S VK+ ++ + +LDTPGI P+ ++
Sbjct: 133 KSTLINRLA-----KKNIAKTGDRPGITTS-QQWVKVGKE--LELLDTPGILWPKFEDEL 184
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLA ++D ++ ++A + L +L R + + LDE +DI L K
Sbjct: 185 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEK 244
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + + + I R FG + ++
Sbjct: 245 RGCLMSGGL---------INYDKTTEVIIRDIRTEKFGRLSFEQ 279
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 134 bits (340), Expect = 1e-37
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V++VGVPN GKS+IIN L+ +A VG + G+T+ + + + ILDTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLK-----GKRASSVGAQPGITKG-IQWFSLENG--VKILDTPG 153
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDI 290
I I + + +L +L + + I + R ++ +
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFAR----SI----GIESSFSEF 205
Query: 291 VMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
A+ KR PD +F +G G V +R
Sbjct: 206 FEDFAR--------KRGLLKKGGV----PDIERALMLFFTEVAQGKAGRVSFER 247
Score = 106 bits (267), Expect = 4e-27
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
+ + + I+ L+ V+ V+EV D+R PF + + S + +++LNK D+ + K
Sbjct: 8 IEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSR---KETIILLNKVDIADEKTT 64
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
E +K+ VI T+ P ++K+ R R V++V
Sbjct: 65 KKWVEFFKKQGKR---VITTHKGEPRKVLLKKLSF---------DRLAR-------VLIV 105
Query: 121 GVPNVGKSSIINALRSSHMKK 141
GVPN GKS+IIN L+
Sbjct: 106 GVPNTGKSTIINKLKGKRASS 126
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 80.8 bits (199), Expect = 3e-17
Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 75/236 (31%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI-----NSKH 59
L+ + K+ +V+++ D L + V N ++LV NK DLI + K
Sbjct: 60 LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN-NKVLLVGNKADLIPKSVKHDKV 118
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ + ++ +V + +G+ ++ +++ V V
Sbjct: 119 KHWMRYSAKQLGLKPEDVFLISAAK--GQGIAELADAIEYYRGGKD-----------VYV 165
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNV 179
VG NVGKS+ IN + + +
Sbjct: 166 VGCTNVGKSTFINRMIKEFSDETE------------------------------------ 189
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
+ G T + + + E+ + DTPGI
Sbjct: 190 -----------------NVITTSHFPGTTLD-LIDIPLDEE--SSLYDTPGIINHH 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 76.5 bits (188), Expect = 9e-16
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%)
Query: 5 LKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI-----NSKH 59
L + + ++ +V+ + D L + + P++LV NK DL+ K
Sbjct: 62 LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAAD-NPILLVGNKADLLPRSVKYPKL 120
Query: 60 ESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMV 119
+ + +V + G+ K++ + + V V
Sbjct: 121 LRWMRRMAEELGLCPVDVCLVSAAK--GIGMAKVMEAINRYREGGD-----------VYV 167
Query: 120 VGVPNVGKSSIINALRSSHMKKGKAVPILPT 150
VG NVGKS+ IN + KG +
Sbjct: 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYF 198
Score = 68.4 bits (167), Expect = 5e-13
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V VVG NVGKS+ IN + KG + G T ++I + + DTPG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL---DMIEIPLESGATLYDTPG 221
Query: 231 ISLPR 235
I
Sbjct: 222 IINHH 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 2e-12
Identities = 63/456 (13%), Positives = 126/456 (27%), Gaps = 156/456 (34%)
Query: 6 KDI-----EKHLKNVDIVIEVHDS-RMPFTGR--NHLLQQSVQNIRPMVLVLNKRDLINS 57
KDI + + N D +V D + + +H++ + L + S
Sbjct: 19 KDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLS 73
Query: 58 KHESLIE---------------EKVRKE--QSHISEVIFTNCRNPNCKGVQKILPTLQHI 100
K E +++ ++ E Q + ++ R+ Q
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----- 128
Query: 101 SDNMTRYH-----RTEVY----NTTVMVVGVPNVGKSS-IINALRSSHMKKGKAVPI--- 147
N++R R + V++ GV GK+ ++ S ++ I
Sbjct: 129 -YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 148 --------------LPTLQH----------------------ISDNMTRYHRTEVYNTTV 171
L L + I + R +++ Y +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 172 MVVGVPNVGKSSIINAL----------RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP 221
+V+ NV + NA R K + S+
Sbjct: 248 LVLL--NVQNAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 222 -----LIYILDTPGISLPR----IDNLECGMRLAACATLQDHLVGEINIADYILFYLNRT 272
L+ LD LPR + + +A +++D L
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAE--SIRDGL--------------ATW 344
Query: 273 GNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPD------------ 320
N+++V+ L + + +L + A +K F R +FP
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLS--------VFPPSAHIPTILLSLI 395
Query: 321 ----TGEVARIFIEHFRKGSFGSVMLDRDFLELDIS 352
+ + K S ++++ E IS
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS----LVEKQPKESTIS 427
Score = 36.4 bits (83), Expect = 0.016
Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 70/246 (28%)
Query: 7 DIEKHLKNVDIVIEVHDSRMPFTGRNH-----LLQQSVQNIRPMVLVL--------NKRD 53
+ +K ++ + V + P R + S +I ++L L +
Sbjct: 351 NCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMV 406
Query: 54 LINSKHE-SLIEEKVRKEQSHISEVIF-TNCRNPNCKGVQKIL----------------- 94
++N H+ SL+E++ ++ I + + N + + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 95 PTL-----QHISDNMTRYHRTEVYNTTVMVVGVPNV--------GKSSIINALRSSHMKK 141
P L HI +H + + + V K +R
Sbjct: 467 PYLDQYFYSHIG-----HHLKNIEHPE-RMTLFRMVFLDFRFLEQK------IRHDSTAW 514
Query: 142 GKAVPILPTLQ-------HISDNMTRYHR-TEVYNTTVMVVGVPNVGKSSIINALRSSHM 193
+ IL TLQ +I DN +Y R + + N+ S + LR + M
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRIALM 573
Query: 194 KKGKAV 199
+ +A+
Sbjct: 574 AEDEAI 579
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 55.1 bits (132), Expect = 1e-08
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 130 IINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR 189
I+N + M+ G I T ISD + + + V V G GKSS IN LR
Sbjct: 38 ILNLIEL-RMRAGN---IQLTNSAISDALKEIDSSVL---NVAVTGETGSGKSSFINTLR 90
Query: 190 SSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPR 235
++ A G VT K P + D PGI
Sbjct: 91 GIGNEEEGAAKTG-VVEVTMERHP-YKHPNIPNVVFWDLPGIGSTN 134
Score = 42.0 bits (98), Expect = 2e-04
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 65 EKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPN 124
+K + IS+ I G I T ISD + + + V V G
Sbjct: 25 KKFNTGRKIISQEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVL---NVAVTGETG 79
Query: 125 VGKSSIINALR-SSHMKKGKAVP 146
GKSS IN LR + ++G A
Sbjct: 80 SGKSSFINTLRGIGNEEEGAAKT 102
Score = 29.3 bits (65), Expect = 2.3
Identities = 10/77 (12%), Positives = 16/77 (20%), Gaps = 3/77 (3%)
Query: 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLI--NSKHESLIEEK 66
+ D I + +R + + + V K D N
Sbjct: 143 KMKFYEYDFFIIISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD 201
Query: 67 VRKEQSHISEVIFTNCR 83
K I R
Sbjct: 202 KEKVLQDIRLNCVNTFR 218
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 53.3 bits (128), Expect = 3e-08
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
T + + + + + ++ + TV+V+G VGKSS +N+L + + + V V P
Sbjct: 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL----IGE-QVVRVSPFQAEGL 72
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATL 251
+ + I I+DTPG+ N + +
Sbjct: 73 RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114
Score = 37.1 bits (86), Expect = 0.005
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 89 GVQKILPTLQ-HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
G Q+ Q + + + + ++ + TV+V+G VGKSS +N+L
Sbjct: 10 GFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Score = 27.1 bits (60), Expect = 9.1
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 43 RPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISD 102
+LVL S E K + + I + + + + ++
Sbjct: 152 CKTLLVLTHAQFSPPDELS-YETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVV--YAE 208
Query: 103 NMTRYHRTEVYN 114
N R + +
Sbjct: 209 NSGRCSKNDKDE 220
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 48.9 bits (117), Expect = 1e-06
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDTP 229
++V G NVGKSS +NAL + + ++ V AG T V +++ + ++DTP
Sbjct: 37 IVVAGRRNVGKSSFMNAL----VGQNVSI-VSDYAGTTTDPVYKSMELHPIGPVTLVDTP 91
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
G+ L A AD +
Sbjct: 92 GLDDVG--ELGRLRVEKARRVFYR--------ADCGIL 119
Score = 36.5 bits (85), Expect = 0.012
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
D I V DS P + ++ + P V+V+NK D++ K E L + +
Sbjct: 111 FYRADCGILVTDS-APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYE 169
Query: 72 SHI 74
+ +
Sbjct: 170 AKV 172
Score = 36.2 bits (84), Expect = 0.013
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 90 VQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+L + + + + ++V G NVGKSS +NAL
Sbjct: 14 GSHMLEDPRRYTMRLPD----AGFRRYIVVAGRRNVGKSSFMNAL 54
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 46.9 bits (111), Expect = 4e-06
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T++V+G VGKSS +N++ + + + V + P + + + I+DTP
Sbjct: 41 TILVMGKGGVGKSSTVNSI----IGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95
Query: 230 GI 231
G+
Sbjct: 96 GL 97
Score = 33.8 bits (77), Expect = 0.072
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
T++V+G VGKSS +N++
Sbjct: 41 TILVMGKGGVGKSSTVNSI 59
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 45.6 bits (109), Expect = 1e-05
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 29/114 (25%)
Query: 40 QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
+ V+V+NK DL + + E + ++ T+ + G++++ L+
Sbjct: 114 NELET-VMVINKMDLYDEDDLRKVRELEEIYSG-LYPIVKTSAKTG--MGIEELKEYLKG 169
Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
+ + G+ VGKSS++NA+ S +++G+
Sbjct: 170 --------------KIST-MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGR 208
Score = 31.3 bits (72), Expect = 0.45
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 33/87 (37%)
Query: 170 TVMVVGVPNVGKSSIINALR----------SSHMKKGKAVPVGPKAGVTRSVMSQVKISE 219
+ G+ VGKSS++NA+ S +++G+ T +
Sbjct: 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRH--------TTTTAQ------- 215
Query: 220 KPLI------YILDTPGISLPRIDNLE 240
L+ Y++DTPG + I+++E
Sbjct: 216 --LLKFDFGGYVVDTPGFANLEINDIE 240
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 45.2 bits (108), Expect = 2e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
Query: 173 VVGVPNVGKSSIINAL----RSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILD 227
++G PNVGKSS++NA+ R V V AG TR +V + +++ + + D
Sbjct: 180 LIGRPNVGKSSLVNAMLGEER---------VIVSNVAGTTRDAVDTSFTYNQQEFVIV-D 229
Query: 228 TPGI 231
T G+
Sbjct: 230 TAGM 233
Score = 39.8 bits (94), Expect = 9e-04
Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHES 61
R LK I++ ++V V D ++ + + + + +V+V+NK D ++ +
Sbjct: 250 RALKAIDR----SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDEST 305
Query: 62 L--IEEKVRKEQSHIS--EVIFTNCRNPNCKGVQKILPTLQHISDNMTR 106
+ EE +R + ++F + K + ++P + S+N +
Sbjct: 306 MKEFEENIRDHFQFLDYAPILFMSALTK--KRIHTLMPAIIKASENHSL 352
Score = 39.8 bits (94), Expect = 0.001
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDT 228
V +VG PNVGKS+I N + + ++ V GVTR + S + I DT
Sbjct: 5 VVAIVGRPNVGKSTIFNRI----AGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLI-DT 58
Query: 229 PGISLPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
GI + +R A AD I+F
Sbjct: 59 GGID-IGDEPFLAQIRQQAEIAMDE-----------ADVIIF 88
Score = 37.5 bits (88), Expect = 0.005
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 119 VVGVPNVGKSSIINAL 134
++G PNVGKSS++NA+
Sbjct: 180 LIGRPNVGKSSLVNAM 195
Score = 31.7 bits (73), Expect = 0.33
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V +VG PNVGKS+I N +
Sbjct: 5 VVAIVGRPNVGKSTIFNRI 23
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 43.8 bits (104), Expect = 2e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T++ G NVGKS++I L GK V G + GVTR ++ +++ I+D P
Sbjct: 3 TIIFAGRSNVGKSTLIYRL------TGKKVRRGKRPGVTRKII-EIEWKNH---KIIDMP 52
Query: 230 GI 231
G
Sbjct: 53 GF 54
Score = 35.0 bits (81), Expect = 0.016
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
T++ G NVGKS++I L
Sbjct: 3 TIIFAGRSNVGKSTLIYRL 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 45.2 bits (108), Expect = 2e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 173 VVGVPNVGKSSIINAL----RSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILD 227
+VG PNVGKS++ NA+ R V P G TR V +V I + +++ D
Sbjct: 185 IVGRPNVGKSTLFNAILNKER---------ALVSPIPGTTRDPVDDEVFIDGRKYVFV-D 234
Query: 228 TPGI 231
T G+
Sbjct: 235 TAGL 238
Score = 40.6 bits (96), Expect = 5e-04
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 21/102 (20%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS-VMSQVKISEKPLIYILDT 228
TV++VG PNVGKS++ N L +KK KA+ V + GVTR V V+ K + DT
Sbjct: 3 TVLIVGRPNVGKSTLFNKL----VKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLV-DT 56
Query: 229 PGISLPRIDNLECGMR---LAACATLQDHLVGEINIADYILF 267
G+ D + M+ L AD +LF
Sbjct: 57 CGVFDNPQDIISQKMKEVTLNMIRE-----------ADLVLF 87
Score = 39.0 bits (92), Expect = 0.002
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRN-HLLQQSVQNIRPMVLVLNKRDLINSKHES 61
R + IEK D+V+ V D+ T ++ + + R V+V NK DL+ + +
Sbjct: 256 RVVDSIEK----ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKR 311
Query: 62 L--IEEKVRKEQSHIS--EVIFTNCRNPNCKGVQKILPTLQHISDNMTR 106
+ R++ I +IFT+ + +++ + + T
Sbjct: 312 YDEFTKLFREKLYFIDYSPLIFTSADKG--WNIDRMIDAMNLAYASYTT 358
Score = 37.5 bits (88), Expect = 0.005
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 119 VVGVPNVGKSSIINAL 134
+VG PNVGKS++ NA+
Sbjct: 185 IVGRPNVGKSTLFNAI 200
Score = 32.1 bits (74), Expect = 0.28
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
TV++VG PNVGKS++ N L
Sbjct: 3 TVLIVGRPNVGKSTLFNKL 21
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 43.7 bits (104), Expect = 4e-05
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 14 NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
NVD VI V +MP L+ + P V+V NK DL+N + + +E +
Sbjct: 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEP-VIVFNKIDLLNEEEKKELERWISI 137
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
+ +V+ + + +G+ +++ L+ ++ G VGKSS
Sbjct: 138 YRDAGYDVLKVSAKTG--EGIDELVDYLE---------------GFICILAGPSGVGKSS 180
Query: 130 IINALRSSHMK 140
I++ L ++
Sbjct: 181 ILSRLTGEELR 191
Score = 32.2 bits (74), Expect = 0.21
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 36/80 (45%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEK--------- 220
++ G VGKSSI++ L ++ ++SEK
Sbjct: 167 ICILAGPSGVGKSSILSRLTGEELRTQ-------------------EVSEKTERGRHTTT 207
Query: 221 -----PL---IYILDTPGIS 232
P ++ DTPG S
Sbjct: 208 GVRLIPFGKGSFVGDTPGFS 227
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 44.1 bits (104), Expect = 4e-05
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 136 SSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKK 195
+S ++ L L + + ++ TV++ G PNVGKS+++ AL ++ +
Sbjct: 137 ASVLRDID--DRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPE- 193
Query: 196 GKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
+ TR + I+DTPG+
Sbjct: 194 -----IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Score = 34.8 bits (80), Expect = 0.031
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 88 KGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGK--AV 145
+ + L L + + ++ TV++ G PNVGKS+++ AL ++ +
Sbjct: 141 RDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200
Query: 146 PILPTLQHISDNMTRY 161
+ D RY
Sbjct: 201 TRGINVGQFEDGYFRY 216
Score = 27.1 bits (60), Expect = 9.8
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 43 RPMVLVLNKRDLINSKHESLIEEKVRKE 70
P ++V+NK D+ + ++ +E+ V+++
Sbjct: 281 LPFLVVINKIDVADEENIKRLEKFVKEK 308
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 42.8 bits (102), Expect = 8e-05
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V +VG PNVGKS+++N L K P+ P+ TR + + + I +DTPG
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-----KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+ P D L M L D + +++
Sbjct: 65 LHKPM-DALGEFMDQEVYEALAD--------VNAVVW 92
Score = 33.2 bits (77), Expect = 0.097
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V +VG PNVGKS+++N L
Sbjct: 10 VAIVGKPNVGKSTLLNNL 27
Score = 32.0 bits (74), Expect = 0.26
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSKHESL 62
L +V+ V+ V D R P T + L+ ++++ + P++LV NK D E++
Sbjct: 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM 137
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 41.4 bits (98), Expect = 1e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDT 228
V++ G PN GKSS++NAL + A+ V AG TR V+ + I PL I+DT
Sbjct: 6 KVVIAGRPNAGKSSLLNAL----AGREAAI-VTDIAGTTRDVLREHIHIDGMPLH-IIDT 59
Query: 229 PGI 231
G+
Sbjct: 60 AGL 62
Score = 35.2 bits (82), Expect = 0.014
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V++ G PN GKSS++NAL
Sbjct: 6 KVVIAGRPNAGKSSLLNAL 24
Score = 30.2 bits (69), Expect = 0.52
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI----RPMVLVLNKRDLINSK 58
+ ++ D V+ + D + P+ +V NK D+
Sbjct: 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 42.4 bits (101), Expect = 1e-04
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 27/104 (25%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-------PKAGVTRSVMSQVKISEKPLI 223
+ +VG PNVGKS+++N L +G KA TR + +
Sbjct: 11 IAIVGRPNVGKSTLLNKL------------LGQKISITSRKAQTTRHRIVGIHTEGAYQA 58
Query: 224 YILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
+DTPG+ + + M AA +++ D + ++F
Sbjct: 59 IYVDTPGLHMEEKRAINRLMNKAASSSIGD--------VELVIF 94
Score = 34.3 bits (80), Expect = 0.040
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 12 LKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
+ +V++VI V + +L + + P++L +NK D + K + L + Q
Sbjct: 86 IGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQ 145
Query: 72 SHISEVI 78
+ +++
Sbjct: 146 MNFLDIV 152
Score = 34.0 bits (79), Expect = 0.057
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+ +VG PNVGKS+++N L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 40.9 bits (97), Expect = 1e-04
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR-SVMSQVKISEKPLIYILDT 228
V++VG PNVGKSS+ N L +KK AV V GVTR V+ + + DT
Sbjct: 3 KVVIVGRPNVGKSSLFNRL----LKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLV-DT 56
Query: 229 PGISLPRIDNLECGMRLAACATLQDHLVGEINI--ADYILF 267
G+ D E ++ + + A+ +LF
Sbjct: 57 GGLWSG--DKWEKKIQEKV----------DRALEDAEVVLF 85
Score = 32.5 bits (75), Expect = 0.091
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V++VG PNVGKSS+ N L
Sbjct: 3 KVVIVGRPNVGKSSLFNRL 21
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 41.8 bits (99), Expect = 2e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 29/115 (25%)
Query: 40 QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHIS-EVIFTNCRNPNCKGVQKILPTLQ 98
+I+P ++ + K DLI + + ++ +I +V T+ ++ + I+P Q
Sbjct: 116 NDIQP-IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ--DSLADIIPHFQ 172
Query: 99 HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR----------SSHMKKGK 143
TTV G VGKSS++NA+ S H+ +GK
Sbjct: 173 D--------------KTTV-FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGK 212
Score = 32.2 bits (74), Expect = 0.24
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 32/86 (37%)
Query: 170 TVMVVGVPNVGKSSIINALR----------SSHMKKGKAVPVGPKAGVTRSVMSQVKISE 219
T + G VGKSS++NA+ S H+ +GK TR V
Sbjct: 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKH--------TTRHVE------- 219
Query: 220 KPLI-----YILDTPGISLPRIDNLE 240
LI + DTPG S ++E
Sbjct: 220 --LIHTSGGLVADTPGFSSLEFTDIE 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 29/115 (25%)
Query: 40 QNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQH 99
+ P ++VLNK DL++ + + E++ ++ V+ + G++ + L
Sbjct: 159 LQVEP-LIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ--DGLKPLEEALT- 214
Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALR-----------SSHMKKGK 143
+ G VGKSS++NAL S+ G+
Sbjct: 215 --------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ 255
Score = 30.7 bits (70), Expect = 0.67
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 34/80 (42%)
Query: 170 TVMVVGVPNVGKSSIINALR-----------SSHMKKGKAVPVGPKAGVTRSVMSQVKIS 218
+ G VGKSS++NAL S+ G+ T +
Sbjct: 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH--------TTTAAR------ 262
Query: 219 EKPLI------YILDTPGIS 232
L ++D+PG+
Sbjct: 263 ---LYHFPHGGDVIDSPGVR 279
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 40.2 bits (95), Expect = 6e-04
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 31/107 (28%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVG-------PKAGVTRSVMSQVKISEKP-- 221
V +VG PNVGKS+++N L +G PKAG TR + VK
Sbjct: 13 VAIVGKPNVGKSTLLNNL------------LGTKVSIISPKAGTTRMRVLGVKNIPNEAQ 60
Query: 222 LIYILDTPGISLPR-IDNLECGMRLAACATLQDHLVGEINIADYILF 267
+I++ DTPGI P+ D L M A +L++ AD ILF
Sbjct: 61 IIFL-DTPGIYEPKKSDVLGHSMVEIAKQSLEE--------ADVILF 98
Score = 37.1 bits (87), Expect = 0.006
Identities = 13/70 (18%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 12 LKNVDIVIEVHDSRMPFT-GRNHLLQQSVQNIR-PMVLVLNKRDLINSKHESL-IEEKVR 68
L+ D+++ + D+ + + Q ++ + P+++V+NK D I L + +++
Sbjct: 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIH 149
Query: 69 KEQSHISEVI 78
K+ ++E++
Sbjct: 150 KKHPELTEIV 159
Score = 33.2 bits (77), Expect = 0.10
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V +VG PNVGKS+++N L
Sbjct: 13 VAIVGKPNVGKSTLLNNL 30
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 39.4 bits (92), Expect = 9e-04
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T+++ G PNVGKSS +N + ++ V V + T+++ + I+DTP
Sbjct: 31 TIILSGAPNVGKSSFMNIVSRAN------VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84
Query: 230 GI 231
G+
Sbjct: 85 GL 86
Score = 35.1 bits (81), Expect = 0.020
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
T+++ G PNVGKSS +N +
Sbjct: 31 TIILSGAPNVGKSSFMNIV 49
Score = 27.4 bits (61), Expect = 5.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 43 RPMVLVLNKRDLINSKHESLIEEKVRKE 70
+ +V+ NK D N S+ + + K+
Sbjct: 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 39.4 bits (91), Expect = 0.001
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVMSQ-VKISEKPL---IY 224
T+MVVG +GKS++IN+L + + + + K T + + V+I E+ + +
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79
Query: 225 ILDTPGISLPRIDNLEC 241
++DTPG I+ +C
Sbjct: 80 VVDTPGYG-DAINCRDC 95
Score = 36.7 bits (84), Expect = 0.008
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
T+MVVG +GKS++IN+L + + + +
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVIS 50
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 39.8 bits (94), Expect = 0.001
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDT 228
+++VG PNVGKS+++N L + + +A+ V G TR V+ ++ I I+DT
Sbjct: 245 RMVIVGKPNVGKSTLLNRL----LNEDRAI-VTDIPGTTRDVISEEIVIRGILFR-IVDT 298
Query: 229 PGI 231
G+
Sbjct: 299 AGV 301
Score = 39.1 bits (92), Expect = 0.002
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
+ ++ DIV+ V D+ P + + + ++N + ++V+NK D++ +E I+ K+
Sbjct: 319 QEIEKADIVLFVLDASSPLDEEDRKILERIKN-KRYLVVINKVDVVEKINEEEIKNKLGT 377
Query: 70 EQSHIS 75
++ +
Sbjct: 378 DRHMVK 383
Score = 34.8 bits (81), Expect = 0.034
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
+++VG PNVGKS+++N L
Sbjct: 245 RMVIVGKPNVGKSTLLNRL 263
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 39.1 bits (92), Expect = 0.002
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDTPGI 231
G PN GKS+++N L + + +A+ V G TR + + + DT G+
Sbjct: 239 AGKPNAGKSTLLNTL----LGQERAI-VSHMPGTTRDYIEECFIHDKTMFR-LTDTAGL 291
Score = 34.8 bits (81), Expect = 0.035
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 120 VGVPNVGKSSIINAL 134
G PN GKS+++N L
Sbjct: 239 AGKPNAGKSTLLNTL 253
Score = 32.1 bits (74), Expect = 0.27
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNI---RPMVLVLNKRDLINSKHESLIEEK 66
+ D+++ + D + ++ + V NK D + +
Sbjct: 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIA 367
Query: 67 VRKEQSHIS 75
I
Sbjct: 368 DGTGTEVIG 376
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 39.0 bits (90), Expect = 0.002
Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 25/118 (21%)
Query: 124 NVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 183
+VG S+ + L + + +G + ++ VG +GKS+
Sbjct: 22 HVGFDSLPDQLVNKSVSQG------------------------FCFNILCVGETGLGKST 57
Query: 184 IINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLEC 241
+++ L ++ + A P + + + + + + I+ T G +I+ +
Sbjct: 58 LMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG-DQINKEDS 114
Score = 35.1 bits (80), Expect = 0.027
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHIS 155
++ VG +GKS++++ L ++ + A P +Q S
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQS 83
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
V + G PNVGK+S+ NAL + V GVT V + I ++D P
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQY------VANWPGVTVEKKEGVFTYKGYTINLIDLP 60
Query: 230 GI-SL 233
G SL
Sbjct: 61 GTYSL 65
Score = 34.2 bits (79), Expect = 0.043
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKG 142
V + G PNVGK+S+ NAL +
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVA 33
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEKPLIYILD 227
T + ++G PN GK+S+ N + + + VG GVT V + + + I D
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQR------VGNWPGVT--VERKSGLVKKNKDLEIQD 55
Query: 228 TPGI-SL 233
PGI S+
Sbjct: 56 LPGIYSM 62
Score = 33.8 bits (78), Expect = 0.054
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKG 142
T + ++G PN GK+S+ N + + + G
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVG 31
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 37.5 bits (88), Expect = 0.003
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
+ ++G PNVGKS+I NAL ++ +G GVT ++D P
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVY------IGNWPGVTVEKKEGEFEYNGEKFKVVDLP 62
Query: 230 GI-SL 233
G+ SL
Sbjct: 63 GVYSL 67
Score = 33.7 bits (78), Expect = 0.050
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIG 35
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 37.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
+ ++G PNVGKS+I NAL ++ +G GVT ++D P
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVY------IGNWPGVTVEKKEGEFEYNGEKFKVVDLP 58
Query: 230 GI-SL 233
G+ SL
Sbjct: 59 GVYSL 63
Score = 33.2 bits (77), Expect = 0.055
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKG 142
+ ++G PNVGKS+I NAL ++ G
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIG 31
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 38.2 bits (90), Expect = 0.003
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM-SQVKISEKPLIYILDTPGI 231
VG PNVGKSS++NA + +A+ V G TR V+ SQ+ + P+ +LDT GI
Sbjct: 230 VGRPNVGKSSLLNAW----SQSDRAI-VTDLPGTTRDVVESQLVVGGIPVQ-VLDTAGI 282
Score = 35.6 bits (83), Expect = 0.021
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
+ D+V+ D+ +T + + + V++ RP++LV+NK DL+ + + +E
Sbjct: 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-RPLILVMNKIDLVEKQLITSLEYPENI 357
Query: 70 EQS-HIS 75
Q H +
Sbjct: 358 TQIVHTA 364
Score = 35.2 bits (82), Expect = 0.032
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 120 VGVPNVGKSSIINAL 134
VG PNVGKSS++NA
Sbjct: 230 VGRPNVGKSSLLNAW 244
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 37.8 bits (87), Expect = 0.003
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISE----KPLIYI 225
T+MVVG +GKS++IN+L + + + + T V + + + L+ I
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69
Query: 226 LDTPGISLPRIDNLEC 241
+DTPG +DN C
Sbjct: 70 VDTPGFG-DAVDNSNC 84
Score = 34.4 bits (78), Expect = 0.048
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEV 166
T+MVVG +GKS++IN+L + + P P H + +++V
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYS----PEYPGPSHRIKKTVQVEQSKV 56
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 37.3 bits (87), Expect = 0.004
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISEKPLIYI 225
T +++G PN GK+++ NAL +++ + VG GVT V + + E I I
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQR------VGNWPGVT--VEKKTGEFLLGEHL-IEI 52
Query: 226 LDTPGI-SL 233
D PG+ SL
Sbjct: 53 TDLPGVYSL 61
Score = 34.6 bits (80), Expect = 0.032
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKG 142
T +++G PN GK+++ NAL +++ + G
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQRVG 29
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 37.3 bits (87), Expect = 0.005
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISEKPLIYIL 226
T+ ++G PN GK+++ N L S + VG AGVT V Q ++ + ++
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQR------VGNWAGVT--VERKEGQFSTTDHQ-VTLV 55
Query: 227 DTPGI-SLPRIDNLECGMRLAACATLQDHLVGE-----INIAD 263
D PG SL I + AC +++ IN+ D
Sbjct: 56 DLPGTYSLTTISSQTSLDEQIAC----HYILSGDADLLINVVD 94
Score = 33.1 bits (76), Expect = 0.12
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
T+ ++G PN GK+++ N L
Sbjct: 5 TIGLIGNPNSGKTTLFNQL 23
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 37.3 bits (87), Expect = 0.005
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDT 228
TV +VG PNVGK++I NAL VG GVT + + ++D
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQH------VGNWPGVTVEKKEGIMEYREKEFLVVDL 57
Query: 229 PGI-SL 233
PGI SL
Sbjct: 58 PGIYSL 63
Score = 34.2 bits (79), Expect = 0.049
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKG 142
TV +VG PNVGK++I NAL G
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVG 31
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 36.0 bits (83), Expect = 0.014
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 91 QKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
Q +L + + ++ + V + G P GKS+ I ++G + +L
Sbjct: 51 QVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108
Score = 33.7 bits (77), Expect = 0.069
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 135 RSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMK 194
S + + +L + + ++ + V + G P GKS+ I +
Sbjct: 43 HSRKKELAQV--LLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100
Query: 195 KGKAVPV 201
+G + V
Sbjct: 101 RGHKLSV 107
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 35.7 bits (81), Expect = 0.020
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 128 SSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINA 187
+ IN + + + ++ I+ + ++V+G GKS+ +NA
Sbjct: 32 AETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVF---RLLVLGDMKRGKSTFLNA 88
Query: 188 L 188
L
Sbjct: 89 L 89
Score = 34.2 bits (77), Expect = 0.060
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 88 KGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
G + ++ I+ + ++V+G GKS+ +NAL
Sbjct: 46 SGKLSLERDIEDITIASKNLQQGVF---RLLVLGDMKRGKSTFLNAL 89
Score = 33.4 bits (75), Expect = 0.12
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 8 IEKHLKNVDIVIEVHDSRMPFTG--RNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIE- 64
++ N ++ V + P T R +L + ++N D + +
Sbjct: 194 SLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253
Query: 65 EKVRKEQSHISEVI 78
E+++ ++ + +V
Sbjct: 254 EELQASENRLRQVF 267
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 34.3 bits (78), Expect = 0.038
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-VTRSVMSQVKISEKPLIYILDT 228
+++VG GKS+ N++ + +A + +T++ I I+DT
Sbjct: 24 RIILVGKTGTGKSAAGNSI-----LRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDT 78
Query: 229 PGISLPRIDNLECGMRLAACATL 251
P + + + C L
Sbjct: 79 PDMFSWKDHCEALYKEVQRCYLL 101
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 34.2 bits (78), Expect = 0.048
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAG-VTRSVMSQVKISEKPLIYILDT 228
+++VG GKS+ N++ K G A +T+ + ++ + ++DT
Sbjct: 31 RIVLVGKTGAGKSATGNSI-----LGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDT 85
Query: 229 PGI 231
PGI
Sbjct: 86 PGI 88
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 34.4 bits (80), Expect = 0.055
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 120 VGVPNVGKSSIINAL 134
VG+PNVGKS+ N L
Sbjct: 28 VGLPNVGKSTFFNVL 42
Score = 34.4 bits (80), Expect = 0.055
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 174 VGVPNVGKSSIINAL 188
VG+PNVGKS+ N L
Sbjct: 28 VGLPNVGKSTFFNVL 42
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.4 bits (78), Expect = 0.057
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMK-KGKAVPVGPKAGVTRSVMSQVKISEKPLIY---I 225
T+MVVG +GKS++IN+L + + P + S+V I E + I
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Query: 226 LDTPGISLPRIDNLEC 241
+DTPG +DN C
Sbjct: 93 VDTPGFG-DAVDNSNC 107
Score = 31.3 bits (70), Expect = 0.43
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM--V 173
T+MVVG +GKS++IN+L + + + ++ + ++ +
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Query: 174 VGVPNVGKS 182
V P G +
Sbjct: 93 VDTPGFGDA 101
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 34.3 bits (79), Expect = 0.058
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 17 IVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKE 70
IV++ + T H+L NI P+++V+ K D ++ E ++
Sbjct: 102 IVVDAKEGPKTQT-GEHMLILDHFNI-PIIVVITKSDNAGTEEIKRTEMIMKSI 153
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 34.0 bits (79), Expect = 0.063
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 120 VGVPNVGKSSIINAL 134
VG+PNVGKS+ A+
Sbjct: 26 VGMPNVGKSTFFRAI 40
Score = 34.0 bits (79), Expect = 0.063
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 174 VGVPNVGKSSIINAL 188
VG+PNVGKS+ A+
Sbjct: 26 VGMPNVGKSTFFRAI 40
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 34.0 bits (79), Expect = 0.065
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 120 VGVPNVGKSSIINAL 134
VG+PNVGKS++ NAL
Sbjct: 7 VGLPNVGKSTLFNAL 21
Score = 34.0 bits (79), Expect = 0.065
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 174 VGVPNVGKSSIINAL 188
VG+PNVGKS++ NAL
Sbjct: 7 VGLPNVGKSTLFNAL 21
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 33.6 bits (78), Expect = 0.074
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 120 VGVPNVGKSSIINAL 134
VG+PNVGKS++ NAL
Sbjct: 8 VGLPNVGKSTLFNAL 22
Score = 33.6 bits (78), Expect = 0.074
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 174 VGVPNVGKSSIINAL 188
VG+PNVGKS++ NAL
Sbjct: 8 VGLPNVGKSTLFNAL 22
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.13
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPIL 148
GVP VGKS+ I AL +++G V +L
Sbjct: 86 GVPGVGKSTAIEALGMHLIERGHRVAVL 113
Score = 32.1 bits (73), Expect = 0.24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPV 201
GVP VGKS+ I AL +++G V V
Sbjct: 86 GVPGVGKSTAIEALGMHLIERGHRVAV 112
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.16
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPIL 148
G P GKS+ + A +++G V ++
Sbjct: 63 GTPGAGKSTFLEAFGMLLIREGLKVAVI 90
Score = 31.7 bits (72), Expect = 0.31
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPV 201
G P GKS+ + A +++G V V
Sbjct: 63 GTPGAGKSTFLEAFGMLLIREGLKVAV 89
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.0 bits (73), Expect = 0.22
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPIL 148
GVP VGKS+ I+AL S G V +L
Sbjct: 62 GVPGVGKSTTIDALGSLLTAAGHKVAVL 89
Score = 31.3 bits (71), Expect = 0.44
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPV 201
GVP VGKS+ I+AL S G V V
Sbjct: 62 GVPGVGKSTTIDALGSLLTAAGHKVAV 88
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.1 bits (72), Expect = 0.22
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 154 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP-VGPKAGVTRSVM 212
+ + + R + + T+MVVG +GKS++IN+L + + + +P K T +
Sbjct: 23 LPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIE 82
Query: 213 SQ-VKISEKPL---IYILDTPGI 231
+ V+I E+ + + ++DTPG
Sbjct: 83 ASTVEIEERGVKLRLTVVDTPGY 105
Score = 31.0 bits (69), Expect = 0.50
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
+ + + R + + T+MVVG +GKS++IN+L + + + +P
Sbjct: 23 LPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIP 69
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 31.5 bits (72), Expect = 0.32
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 124 NVGKSSIINAL 134
N GKS+ IN L
Sbjct: 39 NAGKSTAINVL 49
Score = 31.5 bits (72), Expect = 0.32
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 178 NVGKSSIINAL 188
N GKS+ IN L
Sbjct: 39 NAGKSTAINVL 49
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 31.6 bits (71), Expect = 0.35
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKA-GVTRSVMSQVKISEKPLIYILDT 228
+++VG GKS+ N++ + A VTR+ + + +K + ++DT
Sbjct: 23 RLILVGRTGAGKSATGNSIL-----GQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDT 77
Query: 229 PGISLPRIDNLE 240
P I ++ +
Sbjct: 78 PDIFSSQVSKTD 89
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 31.1 bits (71), Expect = 0.35
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 124 NVGKSSIINAL 134
N GKSS +N L
Sbjct: 36 NAGKSSALNTL 46
Score = 31.1 bits (71), Expect = 0.35
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 178 NVGKSSIINAL 188
N GKSS +N L
Sbjct: 36 NAGKSSALNTL 46
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 31.0 bits (71), Expect = 0.35
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 124 NVGKSSIINAL 134
NVGKSS IN+L
Sbjct: 33 NVGKSSFINSL 43
Score = 31.0 bits (71), Expect = 0.35
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 178 NVGKSSIINAL 188
NVGKSS IN+L
Sbjct: 33 NVGKSSFINSL 43
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 31.5 bits (72), Expect = 0.35
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 119 VVGVPNVGKSSIINAL 134
VVG PNVGKS+ +A
Sbjct: 5 VVGKPNVGKSTFFSAA 20
Score = 31.5 bits (72), Expect = 0.35
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 173 VVGVPNVGKSSIINAL 188
VVG PNVGKS+ +A
Sbjct: 5 VVGKPNVGKSTFFSAA 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 31.0 bits (71), Expect = 0.37
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 124 NVGKSSIINAL 134
NVGKSS++NAL
Sbjct: 33 NVGKSSLLNAL 43
Score = 31.0 bits (71), Expect = 0.37
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 178 NVGKSSIINAL 188
NVGKSS++NAL
Sbjct: 33 NVGKSSLLNAL 43
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.7 bits (72), Expect = 0.44
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSS----HMKKGKAVPVGPKA 205
+++VG GK++ + + + K
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKV 964
Score = 29.0 bits (65), Expect = 2.6
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMK-KGKAV 145
+++VG GK++ + + G A
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHAN 955
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 31.3 bits (70), Expect = 0.46
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V+V G + GK+S I L
Sbjct: 67 MVLVAGQYSTGKTSFIQYL 85
Score = 31.3 bits (70), Expect = 0.46
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 170 TVMVVGVPNVGKSSIINAL 188
V+V G + GK+S I L
Sbjct: 67 MVLVAGQYSTGKTSFIQYL 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 30.5 bits (69), Expect = 0.59
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 9 EKHLKNVDIVIEVHDS----RMPFTGRNHL----LQQSVQNIRPMVLVL-NKRDLINSKH 59
++ + V+ V DS R L + P +L+ NK+D+ +K
Sbjct: 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132
Query: 60 ESLIEEKVRKEQSHI 74
LI++++ KE + +
Sbjct: 133 AKLIQQQLEKELNTL 147
Score = 28.9 bits (65), Expect = 2.0
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
V+ VG+ + GK+ + L G+ + I+D+ Y ++ ++
Sbjct: 9 AVLFVGLCDSGKTLLFVRL-----LTGQYRDTQTS---ITDSSAIYKVNNNRGNSLTLID 60
Query: 176 VPNVGKSSIINALRSSHMKKGKAV 199
+P G S+ L +AV
Sbjct: 61 LP--GHESLRFQLLDRFKSSARAV 82
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.1 bits (67), Expect = 0.79
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
+V G+P VGKS+++ ++ +G I
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
Score = 30.1 bits (67), Expect = 0.83
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+V G+P VGKS+++ ++ +G +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.6 bits (70), Expect = 0.81
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 120 VGVPNVGKSSIINAL 134
VG PN GKSS++ A+
Sbjct: 163 VGYPNAGKSSLLAAM 177
Score = 30.6 bits (70), Expect = 0.81
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 174 VGVPNVGKSSIINAL 188
VG PN GKSS++ A+
Sbjct: 163 VGYPNAGKSSLLAAM 177
Score = 28.3 bits (64), Expect = 3.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 43 RPMVLVLNKRDLINSKHESLIEEKVRKE 70
RP ++ LNK DL+ + + + + +E
Sbjct: 270 RPSLVALNKVDLLEEEAVKALADALARE 297
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.82
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 296 KAAIKKKWFKRAFDVSSNSVRMF-PDTGEVARI--FIE 330
K A+KK + + S++++ D+ I +E
Sbjct: 19 KQALKK--------LQA-SLKLYADDSAPALAIKATME 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 29.5 bits (67), Expect = 0.93
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 180 GKSSIINALRSSHMKKGKAVPVGPKAGVTRSV-MSQVKISEKPLIYILDTPG 230
GK+++++A+R S + + +A G+T+ + QV +++K I LDTPG
Sbjct: 20 GKTTLLDAIRHSKVTEQEA------GGITQHIGAYQVTVNDKK-ITFLDTPG 64
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 30.0 bits (67), Expect = 0.94
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 31 RNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
++L Q + +P+V+VL K D E +R
Sbjct: 187 VSNLYNQLAKTKKPIVVVLTKCDEGV-------ERYIRDAH 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.96
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 45/155 (29%)
Query: 218 SEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRY 277
S P L + IS P L+G I +A Y++ + +
Sbjct: 223 SNTPDKDYLLSIPISCP--------------------LIGVIQLAHYVVTA--KLLGFTP 260
Query: 278 VDFFNLDE----PSDDIVMLLAKAAIKKKW--FKRA--------FDVSSNSVRMFPDTGE 323
+ + + S +V +A A W F + F + +P+T
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAE-TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 324 VARIFIEHFRKGSFG--SVML-----DRDFLELDI 351
I +E + + G S ML ++ ++ +
Sbjct: 320 PPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Score = 28.9 bits (64), Expect = 3.7
Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 43/177 (24%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGR----------------NHLLQQSVQNIRPMV 46
+ L + L+ + SR+PF+ R +HLL + I
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI---- 439
Query: 47 LVLNKRDLINSKHESLIEEKVRKEQSHISEVIFT----NCRNPNCKGVQKILPTLQHISD 102
+DL+ + + I V T + R + ++I+ + +
Sbjct: 440 ----NKDLVKN------NVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 103 NMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILP--TLQHISDN 157
+ + T ++ G P G +S + L + K G V ++ TL D+
Sbjct: 489 KWETTTQFKA--THILDFG-P--GGASGLGVL-THRNKDGTGVRVIVAGTLDINPDD 539
Score = 28.9 bits (64), Expect = 3.7
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 31 RNHLLQQSVQNIRP------MVLVLNKRDLINSKHESL--IEEKVRKEQSHISEVIFTNC 82
R +Q +V M+ + R + E+L + E+V K + E++
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---- 1844
Query: 83 RNPNCKGVQ 91
N N + Q
Sbjct: 1845 -NYNVENQQ 1852
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 29.6 bits (66), Expect = 1.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
N V+V GVP VG ++ + K+G ++
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37
Score = 29.3 bits (65), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
N V+V GVP VG ++ + K+G +
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 36
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 9 EKHLKN-------VDIVIEV--HDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH 59
K LK+ DI + T ++ + + ++ L + D +
Sbjct: 71 PKTLKSLITALNISDIAVLCIPPQGLDAHT-GECIIALDLLGFKHGIIALTRSDSTHMHA 129
Query: 60 ESLIEEKVR 68
++ K++
Sbjct: 130 IDELKAKLK 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.9 bits (68), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 104 MTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+ ++ +VG N GK+S+ N+L
Sbjct: 169 KSIESNKRNNIPSIGIVGYTNSGKTSLFNSL 199
Score = 29.9 bits (68), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 158 MTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 188
+ ++ +VG N GK+S+ N+L
Sbjct: 169 KSIESNKRNNIPSIGIVGYTNSGKTSLFNSL 199
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.9 bits (68), Expect = 1.3
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 120 VGVPNVGKSSIINAL 134
VG P+VGKS++++ +
Sbjct: 164 VGFPSVGKSTLLSVV 178
Score = 29.9 bits (68), Expect = 1.3
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 174 VGVPNVGKSSIINAL 188
VG P+VGKS++++ +
Sbjct: 164 VGFPSVGKSTLLSVV 178
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 311 SSNSVRMFPDTGEVARIFIEHFR------KGSFGSVMLDR 344
++N+V F + G R+ + F KGSFG VML
Sbjct: 1 TTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSE 40
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
+++VG+ GK++I+ +K G+ V +PT+
Sbjct: 3 ILMVGLDAAGKTTILY-----KLKLGEIVTTIPTI 32
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.2 bits (66), Expect = 1.5
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
+++VG+ GK++I+ +K G+ V +PT+
Sbjct: 32 ILMVGLDAAGKTTILY-----KLKLGEIVTTIPTI 61
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
+++ G+P VGKS+ L K V +L
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+++ G+P VGKS+ L K V V
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 29.6 bits (66), Expect = 2.0
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 88 KGVQKILPTLQHISDNMTRYHRTEVYNTT-VMVVGVPNVGKSSIINALR 135
+G + + Q I + ++ V ++G GK+S++ L
Sbjct: 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLI 62
Score = 28.4 bits (63), Expect = 4.5
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 44 PMVLVLNKRDLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDN 103
P+++V+NK D S + ++ + + + +C+ N GV+ I +L+ +
Sbjct: 152 PVIVVMNKIDENPSYNIEQ-KKINERFPAIENRFHRISCK--NGDGVESIAKSLKSAVLH 208
Query: 104 MTRYHRTEV 112
+ T +
Sbjct: 209 PDSIYGTPL 217
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.8 bits (64), Expect = 2.1
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++++G+ GKSSI + M + + + + + S I D PG
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIY---KDDISNSSFVNFQIWDFPG 78
Score = 26.9 bits (59), Expect = 8.9
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
++++G+ GKSSI + M + + + T
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTN 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.8 bits (65), Expect = 2.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
V++VG+ N GK++I+ + V PT+
Sbjct: 24 VIIVGLDNAGKTTILY-----QFSMNEVVHTSPTI 53
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 28.4 bits (64), Expect = 2.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
V++VG+ N GK++I+ + V PT+
Sbjct: 19 VIIVGLDNAGKTTILY-----QFSMNEVVHTSPTI 48
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 28.4 bits (64), Expect = 2.6
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
++++G+ GK++I+ ++ G+ V PT+
Sbjct: 21 ILILGLDGAGKTTILY-----RLQIGEVVTTKPTI 50
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
V+++G+ N GK+SI+ + G V +PT+
Sbjct: 25 VLMLGLDNAGKTSILY-----RLHLGDVVTTVPTV 54
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 28.1 bits (63), Expect = 3.0
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 44 PMVLVLNKRDLINSKHESLIEEKVRKEQ------SHISEVIFTNCRNPNCKGVQKILPTL 97
P++LV D+ + K K+ KE I + F N + K+ T+
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE-ESDALAKLRKTI 172
Query: 98 QHISDNM 104
+ S N
Sbjct: 173 INESLNF 179
Score = 27.3 bits (61), Expect = 6.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 VMVVGVPNVGKSSIINALR 135
+M+VG GK++++ L
Sbjct: 5 LMIVGNTGSGKTTLLQQLM 23
Score = 27.3 bits (61), Expect = 6.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 171 VMVVGVPNVGKSSIINALR 189
+M+VG GK++++ L
Sbjct: 5 LMIVGNTGSGKTTLLQQLM 23
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.9 bits (63), Expect = 3.2
Identities = 8/35 (22%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
++++G+ GK++I+ ++ G+ V +PT+
Sbjct: 10 ILILGLDGAGKTTILY-----RLQVGEVVTTIPTI 39
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.5 bits (63), Expect = 3.2
Identities = 12/120 (10%), Positives = 32/120 (26%), Gaps = 11/120 (9%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
+ H M V+ VG GK+++ +++ V +
Sbjct: 4 SHHHHHHGMASM--------IVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVNLDTGVK 54
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAA--CATLQDHLVGEINIADYILF 267
+ + I + + + + + + ++ DY+L
Sbjct: 55 ELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLI 114
Score = 27.3 bits (60), Expect = 6.5
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 96 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
+ H M V+ VG GK+++ +++ V +
Sbjct: 4 SHHHHHHGMASM--------IVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYV 47
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 28.0 bits (63), Expect = 4.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
++++G+ N GK++I+ I PTL
Sbjct: 21 LLMLGLDNAGKTTILK-----KFNGEDVDTISPTL 50
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.4 bits (64), Expect = 4.2
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 180 GKSSIINALRSSHMKKGKA-----------VPVGPKAGVTRSVMSQVKISEK-PLIYILD 227
GK+++++ +R S + +A +P+ G+ + + I E P ++ +D
Sbjct: 17 GKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFID 76
Query: 228 TPG 230
TPG
Sbjct: 77 TPG 79
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.2 bits (62), Expect = 4.4
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 100 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
+ + + + V++VG GK+S+ L S +K P+
Sbjct: 124 LHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY 172
Score = 27.5 bits (60), Expect = 9.1
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 154 ISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+ + + + V++VG GK+S+ L S +K P+
Sbjct: 124 LHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL 171
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.6 bits (62), Expect = 5.0
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTL 151
++++G+ N GK++++ + I PT
Sbjct: 19 ILLLGLDNAGKTTLLK-----QLASEDISHITPTQ 48
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.4 bits (60), Expect = 5.1
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++ G + GKS I+ L+S + A V + ++ +++ +E + + D
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD---SLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILF 267
P LE A + G I D +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARA---GARIIIDDVFL 96
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.4 bits (61), Expect = 5.4
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 IEKHLKNVDIVIEVHDS-----RMPFTGR--NHLLQ--QSVQNIRPMVLVL-NKRDLINS 57
++ K V +I + DS ++ T +L +S +L+ NK +L +
Sbjct: 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171
Query: 58 KHESLIEEKVRKE 70
+ S I++ + E
Sbjct: 172 RPPSKIKDALESE 184
Score = 27.0 bits (60), Expect = 7.3
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 89 GVQKILPTLQHISDNMTRYHR-TEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
+KI + I + + Y ++++ G N GK+S++ L P
Sbjct: 22 NKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLL-----TTDSVRPT 76
Query: 148 LPTLQHIS 155
+ + + +S
Sbjct: 77 VVSQEPLS 84
>2k9m_A RNA polymerase sigma factor RPON; core binding domain,
transcription; NMR {Aquifex aeolicus}
Length = 130
Score = 26.8 bits (60), Expect = 5.9
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Query: 250 TLQDHLVGEIN---------IADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLA 295
+ + L I +A +L YLN G + L + ++I +L
Sbjct: 4 SELEELQQNIKLELEGKEQELALELLNYLNEKG-F-------LSKSVEEISDVLR 50
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 27.8 bits (62), Expect = 6.6
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 3 RGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESL 62
+ HL ++ V PF + + + + P ++ + + + + +
Sbjct: 378 IAEAEGVVHLHEPASILVVKARVYPF--EDDVEVSTGDRVAPGDVLADGGKVKSDVYGRV 435
Query: 63 IEEKVRKEQSHISEVIFT 80
+ VR +
Sbjct: 436 EVDLVRNVVRVVESYDID 453
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.2 bits (61), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 116 TVMVVGVPNVGKSSIINALRSSH 138
T++++G VG+S I NAL S +
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQN 43
Score = 27.2 bits (61), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 170 TVMVVGVPNVGKSSIINALRSSH 192
T++++G VG+S I NAL S +
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQN 43
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.0 bits (60), Expect = 7.2
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 8 IEKHLKNVDIVIEVHDS-----RMPFTGR--NHLLQ--QSVQNIRPMVLVL-NKRDLINS 57
++ K V +I + DS ++ T +L +S +L+ NK +L +
Sbjct: 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135
Query: 58 KHESLIEEKVRKE 70
+ S I++ + E
Sbjct: 136 RPPSKIKDALESE 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.3 bits (60), Expect = 7.4
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
+ ++++G GKSS+ + + S+ +G V S ++ + + D
Sbjct: 3 GSKLLLMGRSGSGKSSMRSII-FSNYSAFDTRRLGATIDVE---HSHLRFLGNMTLNLWD 58
Query: 228 TPG 230
G
Sbjct: 59 CGG 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.0 bits (60), Expect = 8.5
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSV---MSQVKISE----KPLI 223
++ G GK++ + + S + K V R++ + I E K
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRF 76
Query: 224 YILDTPG 230
++ PG
Sbjct: 77 HLYTVPG 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.392
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,356,184
Number of extensions: 323519
Number of successful extensions: 1447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 219
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)