RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15351
(352 letters)
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 89.5 bits (221), Expect = 3e-21
Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 74/344 (21%)
Query: 1 MGRGLKDIEKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE 60
M + +++ + LK +DIV E+ D+ R ++S++
Sbjct: 2 MAKARREVTEKLKLIDIVYELVDA---------------------------RIPMSSRNP 34
Query: 61 SLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVV 120
+IE+ ++ + P + K ++ + + ++ +
Sbjct: 35 -MIEDILKNK--------------PRIMLLNKADKADAAVTQQWKEHFENQ-GIRSLSIN 78
Query: 121 GVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVG 180
V G + I+ A + +K + R + +++G+PNVG
Sbjct: 79 SVNGQGLNQIVPASKEILQEK--------------FDRMRAKGVKPRAIRALIIGIPNVG 124
Query: 181 KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISLPRIDNLE 240
KS++IN + K G + G+T S + + +LDTPGI P+ ++
Sbjct: 125 KSTLINR-----LAKKNIAKTGDRPGITTSQQ---WVKVGKELELLDTPGILWPKFEDEL 176
Query: 241 CGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIK 300
G+RLA ++D ++ ++A + L +L R + + LDE +DI L K
Sbjct: 177 VGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEK 236
Query: 301 KKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRKGSFGSVMLDR 344
+ + + + I R FG + ++
Sbjct: 237 RGCLMSGGL---------INYDKTTEVIIRDIRTEKFGRLSFEQ 271
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 45.4 bits (106), Expect = 1e-06
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+++VG PNVGKS+++N L + V G TR V+S+ + L I+DT G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE-----DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 57
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
+ D +E + EI AD +LF L+ + D
Sbjct: 58 VRSETNDLVERLGIERT--------LQEIEKADIVLFVLDASSPLDEEDRKI 101
Score = 35.0 bits (79), Expect = 0.005
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
+++VG PNVGKS+++N L +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNED 24
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 45.1 bits (105), Expect = 2e-06
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
T++ G NVGKS++I L GK V G + GVTR ++ + I+D P
Sbjct: 2 TIIFAGRSNVGKSTLIYRLT------GKKVRRGKRPGVTRKIIEIEWKN----HKIIDMP 51
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPSD- 288
G E R+ + ++ + P D
Sbjct: 52 GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV 111
Query: 289 DIVMLLAKAAIKKKWFKRAFD 309
+ L + I D
Sbjct: 112 EFYQFLRELDIPTIVAVNKLD 132
Score = 39.3 bits (90), Expect = 2e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGK 143
T++ G NVGKS++I L +++GK
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGK 29
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 45.5 bits (107), Expect = 5e-06
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V V G GKSS IN LR ++ A G VT K P + D PG
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMER-HPYKHPNIPNVVFWDLPG 116
Query: 231 ISLPRIDNLE 240
I
Sbjct: 117 IGSTNFPPDT 126
Score = 40.5 bits (94), Expect = 2e-04
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 53 DLINSKHESLIEEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEV 112
DL +S +K + IS+ I G I T ISD + + +
Sbjct: 2 DLPSSFTG--YFKKFNTGRKIISQEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVL 57
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVP 146
V V G GKSS IN LR ++ A
Sbjct: 58 N---VAVTGETGSGKSSFINTLRGIGNEEEGAAK 88
Score = 32.4 bits (73), Expect = 0.080
Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 13/136 (9%)
Query: 9 EKHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVR 68
+ D I + +R + + + V K D + +
Sbjct: 130 KMKFYEYDFFIIISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD 188
Query: 69 KEQSHISEVIFTNCRNPNCKGVQKILPTLQHI----SDNMTRYHRTEVYNTTVMVVGVPN 124
KE+ + + R ++ I + N+ Y + + + +P
Sbjct: 189 KEK------VLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD--LPI 240
Query: 125 VGKSSIINALRSSHMK 140
+ + + +L +
Sbjct: 241 YKRHNFMVSLPNITDS 256
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 44.7 bits (105), Expect = 5e-06
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 33/158 (20%)
Query: 14 NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
NVD VI V +MP T L+ + V+V+NK DL + + E
Sbjct: 10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNELET-VMVINKMDLYDEDDLRKVRELEEI 68
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
V + + +++ L + G+ VGKSS
Sbjct: 69 YSGLYPIVKTSAKTGMGIEELKEYLK------------------GKISTMAGLSGVGKSS 110
Query: 130 IINALR----------SSHMKKGKAVPILPTLQHISDN 157
++NA+ S +++G+ L
Sbjct: 111 LLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG 148
Score = 34.3 bits (78), Expect = 0.014
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
+ G+ VGKSS++NA+ + V + G + +Q+ + Y++D
Sbjct: 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG-GYVVD 153
Query: 228 TPGISLPRIDNLECGMR 244
TPG + I+++E
Sbjct: 154 TPGFANLEINDIEPEEL 170
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 41.1 bits (95), Expect = 5e-05
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
V +VG P+VGKS++++ + S+ K + V+ + + D P
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSA-----KPKIADYHFTTLVPNLGMVETDDGRSFVMADLP 57
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINI 261
G+ + G + +V I++
Sbjct: 58 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDM 89
Score = 36.1 bits (82), Expect = 0.003
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
V +VG P+VGKS++++ + S+ K + ++ T R+ V ++
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT-TLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 176 VPNVGKSSIINALR 189
+ G LR
Sbjct: 62 GAHQGVGLGHQFLR 75
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 41.2 bits (95), Expect = 6e-05
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V +VG PN GKSS++ A+ + + V++SE+ + D PG
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRA-----HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Query: 231 I 231
I
Sbjct: 59 I 59
Score = 38.5 bits (88), Expect = 4e-04
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVGV 176
V +VG PN GKSS++ A+ +H K ++ ++
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSEEERFTLADIPGIIEG 62
Query: 177 PNVGKSSIINALRSSHM 193
+ GK + LR
Sbjct: 63 ASEGKGLGLEFLRHIAR 79
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 41.3 bits (96), Expect = 9e-05
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 150 TLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
T + + + + +V + T++V+G VGKSS +N++ + V + P
Sbjct: 14 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE-----RVVSISPFQSEGP 68
Query: 210 SVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAAC 248
+ + + I+DTPG+ N + +
Sbjct: 69 RPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 107
Score = 41.0 bits (95), Expect = 1e-04
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 89 GVQKILPTLQ-HISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
G+ P Q + + + + +V + T++V+G VGKSS +N++ +
Sbjct: 6 GINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS 65
Query: 148 LPTLQHISDNMTRYHRTEVYNTT 170
+ + + +R T T
Sbjct: 66 -EGPRPVMVSRSRAGFTLNIIDT 87
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 40.0 bits (92), Expect = 2e-04
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
V +VG PNVGKS++ NA+ + V P G TR + + +DT
Sbjct: 10 KVAIVGRPNVGKSTLFNAIL-----NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 230 GISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLD 284
G+ + + + I AD ++ L+ T D
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVD-----SIEKADVVVIVLDATQGITRQDQRMAG 114
Score = 33.5 bits (75), Expect = 0.019
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V +VG PNVGKS++ NA+
Sbjct: 10 KVAIVGRPNVGKSTLFNAI 28
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 40.1 bits (93), Expect = 2e-04
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 21/136 (15%)
Query: 14 NVDIVIEVHDSRMPFTGRN----HLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRK 69
NVD + V + P L+ +I+P ++ + K DLI E++ +
Sbjct: 10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQP-IICITKMDLI--------EDQDTE 60
Query: 70 EQSHISEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSS 129
+ + N K +L I + + G VGKSS
Sbjct: 61 DTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKT--------TVFAGQSGVGKSS 112
Query: 130 IINALRSSHMKKGKAV 145
++NA+ + +
Sbjct: 113 LLNAISPELGLRTNEI 128
Score = 39.7 bits (92), Expect = 2e-04
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 149 PTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVT 208
+ + T + G VGKSS++NA+ + + G
Sbjct: 78 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKH 137
Query: 209 RSVMSQVKISEKPLIYILDTPGISLPRIDNLECGMRLAACATLQDHL 255
+ ++ + + DTPG S ++E +++
Sbjct: 138 TTRHVELIHTSG--GLVADTPGFSSLEFTDIEEEELGYTFPDIREKS 182
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 39.0 bits (89), Expect = 2e-04
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
TV++VG PNVGKS++ N L + + ++ +T +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 58
Score = 38.2 bits (87), Expect = 5e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM 212
TV++VG PNVGKS++ N L K K V + GVTR +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLV-----KKKKAIVEDEEGVTRDPV 39
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 37.8 bits (86), Expect = 8e-04
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
+ +VG PNVGKS+++N L K KA TR + + +DTPG
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 231 ISLPRIDNLECGMRLAACATLQD 253
+ + + M AA +++ D
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGD 85
Score = 37.0 bits (84), Expect = 0.001
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
+ +VG PNVGKS+++N L + + + + ++ +T +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 36.6 bits (83), Expect = 0.002
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
Y+ V +VG PNVGKS+++N L + P + + +T +
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Score = 36.3 bits (82), Expect = 0.003
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSH 192
Y+ V +VG PNVGKS+++N L
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVK 29
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 36.5 bits (83), Expect = 0.002
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 113 YNTTVMVVGVPNVGKSSIINALRSSHMKKG 142
Y ++++ G N GK+S++ L + ++
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 31
Score = 36.5 bits (83), Expect = 0.002
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 167 YNTTVMVVGVPNVGKSSIINALRSSHMKKG 196
Y ++++ G N GK+S++ L + ++
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 31
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 35.5 bits (80), Expect = 0.005
Identities = 11/47 (23%), Positives = 15/47 (31%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHR 163
V G N GKSS +N L + + T + R
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR 65
Score = 34.4 bits (77), Expect = 0.010
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM 193
V G N GKSS +N L +
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKS 41
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 35.1 bits (79), Expect = 0.005
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 116 TVMVVGVPNVGKSSIINAL 134
V++ G PN GKSS++NAL
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
Score = 35.1 bits (79), Expect = 0.005
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 170 TVMVVGVPNVGKSSIINAL 188
V++ G PN GKSS++NAL
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 35.0 bits (80), Expect = 0.008
Identities = 17/92 (18%), Positives = 36/92 (39%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV 174
+++VGV VGK++ I L ++GK+V + + + + N ++
Sbjct: 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 69
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAG 206
+S+I + + V + AG
Sbjct: 70 QHTGADSASVIFDAIQAAKARNIDVLIADTAG 101
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 34.9 bits (79), Expect = 0.013
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 174 VGVPNVGKSSIINALRSSHMK------------KGKAVPVGPKAGVTRSVMSQVKISEKP 221
VG PNVGKS+ +A ++ G + + E
Sbjct: 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65
Query: 222 L------IYILDTPGISLPRIDNLECGMRLAA 247
+ ++D G+ + G +
Sbjct: 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLD 97
Score = 33.0 bits (74), Expect = 0.040
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 120 VGVPNVGKSSIINALRSSHMK 140
VG PNVGKS+ +A ++
Sbjct: 6 VGKPNVGKSTFFSAATLVDVE 26
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 34.0 bits (76), Expect = 0.016
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
+ + G NVGKSS IN+L + + K G T+++ + E + +
Sbjct: 25 EIALAGRSNVGKSSFINSL----INRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYG 80
Query: 230 GISLPRIDNLECGMRLAAC 248
+ + + G +
Sbjct: 81 FAKVSKSEREAWGRMIETY 99
Score = 32.8 bits (73), Expect = 0.036
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 116 TVMVVGVPNVGKSSIINALR 135
+ + G NVGKSS IN+L
Sbjct: 25 EIALAGRSNVGKSSFINSLI 44
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.6 bits (76), Expect = 0.018
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-IYILDTP 229
++++G VGK+ ++ +G P ++ V+I+ + + + I DT
Sbjct: 8 IVLIGNAGVGKTCLVRRFT-----QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62
Query: 230 G 230
G
Sbjct: 63 G 63
Score = 29.0 bits (64), Expect = 0.61
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G VGK+ ++
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGL 29
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.028
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
T +++VG+P GK+ I L G
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 36
Score = 32.3 bits (72), Expect = 0.060
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
T +++VG+P GK+ I L G
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 32.9 bits (74), Expect = 0.032
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++++G +VGK+S + VG V + +I + I DT G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK----LQIWDTAG 63
Score = 29.1 bits (64), Expect = 0.58
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++++G +VGK+S +
Sbjct: 8 ILIIGNSSVGKTSFLFRY 25
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 33.0 bits (75), Expect = 0.037
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 119 VVGVPNVGKSSIINAL 134
+VG+PNVGKS++ NAL
Sbjct: 7 IVGLPNVGKSTLFNAL 22
Score = 33.0 bits (75), Expect = 0.037
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 173 VVGVPNVGKSSIINAL 188
+VG+PNVGKS++ NAL
Sbjct: 7 IVGLPNVGKSTLFNAL 22
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.4 bits (72), Expect = 0.039
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++ +G+ N GK+++++ L++
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR 24
Score = 32.4 bits (72), Expect = 0.039
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++ +G+ N GK+++++ L++
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR 24
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 32.9 bits (74), Expect = 0.043
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 114 NTTVMVVGVPNVGKSSIINAL 134
N +VG+PNVGKS+ A+
Sbjct: 10 NLKTGIVGMPNVGKSTFFRAI 30
Score = 32.9 bits (74), Expect = 0.043
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 168 NTTVMVVGVPNVGKSSIINAL 188
N +VG+PNVGKS+ A+
Sbjct: 10 NLKTGIVGMPNVGKSTFFRAI 30
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.7 bits (73), Expect = 0.054
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
V+ VG GK+++ K V GV +P I + +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKEL-------PYEPSIDVREF-- 53
Query: 231 ISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDF 280
+++ I E A D L+ + N + L + +Y +D
Sbjct: 54 VTVEEIMR-EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDT 102
Score = 29.6 bits (65), Expect = 0.46
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
V+ VG GK+++ K +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 32.0 bits (71), Expect = 0.065
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 103 NMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH 138
+MTR R ++++G+ GK++I+ L+
Sbjct: 1 HMTREMR-------ILILGLDGAGKTTILYRLQVGE 29
Score = 32.0 bits (71), Expect = 0.065
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 157 NMTRYHRTEVYNTTVMVVGVPNVGKSSIINALRSSH 192
+MTR R ++++G+ GK++I+ L+
Sbjct: 1 HMTREMR-------ILILGLDGAGKTTILYRLQVGE 29
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.6 bits (70), Expect = 0.071
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G+ N GK++I+
Sbjct: 5 LLMLGLDNAGKTTILKKFNGED 26
Score = 31.6 bits (70), Expect = 0.071
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++++G+ N GK++I+
Sbjct: 5 LLMLGLDNAGKTTILKKFNGED 26
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.9 bits (71), Expect = 0.073
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 18 VIEVHDSRMPFTGRNHLLQ------QSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQ 71
V++ + L +++N +++ NK+D+ +K LI++++ KE
Sbjct: 78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 137
Query: 72 SHISE 76
+ +
Sbjct: 138 NTLRV 142
Score = 31.9 bits (71), Expect = 0.086
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMK 140
V+ VG+ + GK+ + L + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYR 26
Score = 31.9 bits (71), Expect = 0.086
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMK 194
V+ VG+ + GK+ + L + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYR 26
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 31.7 bits (71), Expect = 0.075
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-IYILDTP 229
++++G VGK+ ++ +G + +++ K + + I DT
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIR-----TIELDGKRIKLQIWDTA 63
Query: 230 G 230
G
Sbjct: 64 G 64
Score = 27.8 bits (61), Expect = 1.2
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++++G VGK+ ++
Sbjct: 9 LLLIGDSGVGKTCVLFRF 26
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.6 bits (70), Expect = 0.079
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYH 162
+ +VG+ GK++ +N + S + + ++ I+
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 50
Score = 30.4 bits (67), Expect = 0.16
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM 193
+ +VG+ GK++ +N + S
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.9 bits (71), Expect = 0.082
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPIL 148
+V G+P VGKS+++ ++ +G I+
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35
Score = 30.8 bits (68), Expect = 0.15
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRS 210
+V G+P VGKS+++ ++ +G + +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA 43
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.3 bits (70), Expect = 0.085
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++++G VGKS ++ G+ + + +K + I DT G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPS----FITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
Score = 28.2 bits (62), Expect = 1.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G VGKS ++
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDK 26
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.1 bits (72), Expect = 0.088
Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 17/174 (9%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVVG 175
+ V G P GKS+ + A +++G V ++ + + + T M
Sbjct: 56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS----PVTGGSILGDKTRMNDL 111
Query: 176 VPNVG----KSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYI------ 225
L + + + + + AG ++ V + +
Sbjct: 112 ARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCF 171
Query: 226 --LDTPGISLPRIDNLECGMRLAACATL-QDHLVGEINIADYILFYLNRTGNYR 276
L G + M +A + +D N+A Y + R
Sbjct: 172 ISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILR 225
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 32.2 bits (72), Expect = 0.093
Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 7/149 (4%)
Query: 170 TVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVK--ISEKPLIYILD 227
V + GVP VGKS+ I+AL S G V A + S +
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKV-----AVLAVDPSSTRTGGSILGDKTRMAR 107
Query: 228 TPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFNLDEPS 287
I L A + A + + + G +
Sbjct: 108 LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDF 167
Query: 288 DDIVMLLAKAAIKKKWFKRAFDVSSNSVR 316
++ML + K F+++
Sbjct: 168 FLVLMLPGAGDELQGIKKGIFELADMIAV 196
Score = 29.9 bits (66), Expect = 0.40
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 116 TVMVVGVPNVGKSSIINALRSSHMKKGKAV 145
V + GVP VGKS+ I+AL S G V
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKV 82
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.5 bits (70), Expect = 0.098
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 4/124 (3%)
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMV 173
N V+V GVP VG ++ + K+G ++ M + E +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF----GSVMFEVAKEENLVSDRDQ 56
Query: 174 VGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGISL 233
+ + I + + + + + + P + + +
Sbjct: 57 MRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLI 116
Query: 234 PRID 237
++
Sbjct: 117 IVVE 120
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.0 bits (69), Expect = 0.13
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPG 230
++++G VGKSS++ + GV V + K + I DT G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPE----LAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
Score = 28.7 bits (63), Expect = 0.70
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++++G VGKSS++
Sbjct: 10 ILIIGESGVGKSSLLLRF 27
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.16
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 117 VMVVGVPNVGKSSIINALRSSHM 139
V++VG+ N GK++I+ + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEV 40
Score = 30.7 bits (68), Expect = 0.16
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM 193
V++VG+ N GK++I+ + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEV 40
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.4 bits (67), Expect = 0.17
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
+++VG+ GK++I+ L+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE 24
Score = 30.4 bits (67), Expect = 0.17
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
+++VG+ GK++I+ L+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE 24
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.4 bits (67), Expect = 0.19
Identities = 7/56 (12%), Positives = 22/56 (39%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVM 172
++ +G+ N GK+++++ L+ + + + + MT +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 71
Score = 30.4 bits (67), Expect = 0.19
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKK 195
++ +G+ N GK+++++ L+ + +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQ 40
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.3 bits (67), Expect = 0.22
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 117 VMVVGVPNVGKSSIINALRSSHM 139
++++G+ N GK++++ L S +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDI 41
Score = 30.3 bits (67), Expect = 0.22
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 171 VMVVGVPNVGKSSIINALRSSHM 193
++++G+ N GK++++ L S +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDI 41
Score = 26.1 bits (56), Expect = 6.0
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 10 KHLKNVDIVIEVHDSRMPFTGRNHLLQQSVQNIR------PMVLVLNKRDLINSKHESLI 63
+ +N DI+I V DS + + P+++ NK+DL+ + S I
Sbjct: 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEI 138
Query: 64 EEKVRKEQSHISEVIFTNCRNPNCKGVQKILPTL-QHI 100
E + +C +GVQ + + +++
Sbjct: 139 AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.2 bits (67), Expect = 0.26
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-IYILDTP 229
++++G VGKS ++ +G + V++ K + + I DT
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK-----TVELDGKTVKLQIWDTA 63
Query: 230 G 230
G
Sbjct: 64 G 64
Score = 27.1 bits (59), Expect = 2.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++++G VGKS ++
Sbjct: 9 LLLIGNSGVGKSCLLLRF 26
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.9 bits (66), Expect = 0.28
Identities = 15/165 (9%), Positives = 45/165 (27%), Gaps = 12/165 (7%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNM-----TRYHRTEVYNTTV 171
+ GK++++ L + +G ++ H D + R T+
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 172 MVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTPGI 231
+ + + + + V ++ D G
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLI--LVEGFKHEEIAKIVLFRDGAGH 122
Query: 232 SLPRIDNLECGMRLAACATLQD-----HLVGEINIADYILFYLNR 271
+ + +A+ L + +AD+++ ++ +
Sbjct: 123 RPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQK 167
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.8 bits (66), Expect = 0.32
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 171 VMVVGVPNVGKSSIINAL-RSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
VM+VG VGK+ ++ + + VG + VK+ + + DT
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK----LQMWDTA 64
Query: 230 G 230
G
Sbjct: 65 G 65
Score = 28.3 bits (62), Expect = 0.91
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
VM+VG VGK+ ++
Sbjct: 9 VMLVGDSGVGKTCLLVRF 26
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.33
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPL-IYILDTP 229
+V+G GKS +++ + K + + K + + I DT
Sbjct: 8 FLVIGNAGTGKSCLLHQF-----IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62
Query: 230 G 230
G
Sbjct: 63 G 63
Score = 28.3 bits (62), Expect = 1.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+V+G GKS +++
Sbjct: 8 FLVIGNAGTGKSCLLHQF 25
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.3 bits (64), Expect = 0.39
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
V+++G VGKS++ N H
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVH 27
Score = 29.3 bits (64), Expect = 0.39
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
V+++G VGKS++ N H
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVH 27
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 29.2 bits (65), Expect = 0.54
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 6 KDIEKHLKNVDIVIEVHDSR---MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHE-S 61
K++ +D I V + MP T R H+L + +V+ +NK D+++
Sbjct: 82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQVGVPYIVVFMNKVDMVDDPELLD 140
Query: 62 LIEEKVR 68
L+E +VR
Sbjct: 141 LVEMEVR 147
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.9 bits (63), Expect = 0.59
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V+++G VGK+S++N
Sbjct: 5 VIILGDSGVGKTSLMNQY 22
Score = 28.9 bits (63), Expect = 0.59
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V+++G VGK+S++N
Sbjct: 5 VIILGDSGVGKTSLMNQY 22
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.9 bits (63), Expect = 0.62
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V+++G VGK+S+++
Sbjct: 5 VIILGDSGVGKTSLMHRY 22
Score = 28.9 bits (63), Expect = 0.62
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V+++G VGK+S+++
Sbjct: 5 VIILGDSGVGKTSLMHRY 22
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 0.65
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++VVG VGKSS+I
Sbjct: 5 MVVVGNGAVGKSSMIQRY 22
Score = 28.9 bits (63), Expect = 0.65
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++VVG VGKSS+I
Sbjct: 5 MVVVGNGAVGKSSMIQRY 22
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.0 bits (64), Expect = 0.70
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 111 EVYNTT--VMVVGVPNVGKSSIINALRSSH 138
+VY T ++++G GKS+I+ +R H
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRILH 30
Score = 29.0 bits (64), Expect = 0.70
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 165 EVYNTT--VMVVGVPNVGKSSIINALRSSH 192
+VY T ++++G GKS+I+ +R H
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRILH 30
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 0.77
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPT 150
V + G P VGK+++I+ G V T
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37
Score = 28.8 bits (63), Expect = 0.77
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAV 199
V + G P VGK+++I+ G V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 0.88
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV 174
+M+VGV GK++ L + KKG V ++ + + + + +
Sbjct: 13 YVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG 72
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILD 227
I + + + + AG R + + + I +
Sbjct: 73 EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAG--RHGYGEEAALLEEMKNIYE 123
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.3 bits (62), Expect = 1.1
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
V+++G VGKS++++ +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNE 28
Score = 28.3 bits (62), Expect = 1.1
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
V+++G VGKS++++ +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNE 28
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.4 bits (62), Expect = 1.1
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKPLIYILDTP 229
++++G+ GK++I+ ++ G+ V P G +S + + + D
Sbjct: 20 ILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLK----LNVWDLG 69
Score = 27.6 bits (60), Expect = 1.6
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 117 VMVVGVPNVGKSSIINALRSSHM 139
++++G+ GK++I+ L+ +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEV 42
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.2 bits (62), Expect = 1.1
Identities = 18/95 (18%), Positives = 33/95 (34%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTTVMVV 174
V+VVGV VGK++ I L + GK V + T+ + ++
Sbjct: 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ 66
Query: 175 GVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTR 209
G +++ + +G + AG
Sbjct: 67 GPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLH 101
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.3 bits (62), Expect = 1.1
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++ +G VGK++ +
Sbjct: 8 LLALGDSGVGKTTFLYRY 25
Score = 28.3 bits (62), Expect = 1.1
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++ +G VGK++ +
Sbjct: 8 LLALGDSGVGKTTFLYRY 25
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.1 bits (61), Expect = 1.1
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNT 169
+VVG VGK+ ++ + ++ + + +++T
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Score = 27.7 bits (60), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+VVG VGK+ ++ +
Sbjct: 8 CVVVGDGAVGKTCLLISY 25
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.3 bits (62), Expect = 1.3
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 92 KILPTLQHISDNMTRYHRTEVYNTTVMVVGVPNVGKSSIINAL 134
+++P + + D + ++VVG + GKSS++ +
Sbjct: 2 QLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENI 44
Score = 27.1 bits (59), Expect = 3.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++VVG + GKSS++ +
Sbjct: 27 IVVVGSQSSGKSSVLENI 44
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.9 bits (61), Expect = 1.5
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G GKS+ + +R H
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIH 26
Score = 27.9 bits (61), Expect = 1.5
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++++G GKS+ + +R H
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIH 26
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.8 bits (60), Expect = 1.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
V+++G P VGKS++
Sbjct: 4 VLLLGAPGVGKSALARIFGGVE 25
Score = 27.8 bits (60), Expect = 1.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
V+++G P VGKS++
Sbjct: 4 VLLLGAPGVGKSALARIFGGVE 25
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 1.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V++VG VGKS++
Sbjct: 7 VIMVGSGGVGKSALTLQF 24
Score = 27.6 bits (60), Expect = 1.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V++VG VGKS++
Sbjct: 7 VIMVGSGGVGKSALTLQF 24
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 1.7
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+++VG GK+ ++
Sbjct: 5 LVIVGDGACGKTCLLIVN 22
Score = 27.7 bits (60), Expect = 1.7
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+++VG GK+ ++
Sbjct: 5 LVIVGDGACGKTCLLIVN 22
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.6 bits (60), Expect = 1.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++ +G +VGK+S+I
Sbjct: 3 LVFLGEQSVGKTSLITRF 20
Score = 27.6 bits (60), Expect = 1.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++ +G +VGK+S+I
Sbjct: 3 LVFLGEQSVGKTSLITRF 20
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.3 bits (59), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++V+G NVGK+ +
Sbjct: 5 IIVIGDSNVGKTCLTYRF 22
Score = 27.3 bits (59), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++V+G NVGK+ +
Sbjct: 5 IIVIGDSNVGKTCLTYRF 22
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.6 bits (60), Expect = 1.8
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170
V+++G VGKSS++N ++ I + + + T T
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62
Score = 27.2 bits (59), Expect = 2.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V+++G VGKSS++N
Sbjct: 9 VILLGDGGVGKSSLMNRY 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+ ++G +VGKSS+
Sbjct: 7 IAILGYRSVGKSSLTIQF 24
Score = 27.4 bits (59), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+ ++G +VGKSS+
Sbjct: 7 IAILGYRSVGKSSLTIQF 24
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 1.9
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G+ GK++I+ L+
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQ 36
Score = 27.6 bits (60), Expect = 1.9
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++++G+ GK++I+ L+
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQ 36
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.7 bits (61), Expect = 1.9
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVMSQVKISEKP--LIYILDT 228
V +VG+ GKS ++N L + KKG ++ ++ M V +KP ++ +LDT
Sbjct: 35 VAIVGLYRTGKSYLMNKL--AGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDT 92
Query: 229 PGISLPRIDNLECGMRLAACATL 251
G+ + + + A A L
Sbjct: 93 EGLGDVEKGDNQNDSWIFALAVL 115
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 2.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 117 VMVVGVPNVGKSSIIN 132
++VVG VGKS++
Sbjct: 9 LVVVGGGGVGKSALTI 24
Score = 27.3 bits (59), Expect = 2.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 171 VMVVGVPNVGKSSIIN 186
++VVG VGKS++
Sbjct: 9 LVVVGGGGVGKSALTI 24
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.3 bits (59), Expect = 2.0
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170
++++G VGKSSI+ S+ + K I + + T
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Score = 27.3 bits (59), Expect = 2.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++++G VGKSSI+
Sbjct: 6 LVLLGEAAVGKSSIVLRF 23
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V V G VGKSS++
Sbjct: 5 VAVFGAGGVGKSSLVLRF 22
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V V G VGKSS++
Sbjct: 5 VAVFGAGGVGKSSLVLRF 22
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 2.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G GKS+ I +R H
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIH 26
Score = 27.2 bits (59), Expect = 2.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++++G GKS+ I +R H
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIH 26
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.4 bits (60), Expect = 2.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 115 TTVMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
+MVVGV GK++ L + +GK+V +
Sbjct: 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 50
Score = 26.6 bits (58), Expect = 3.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 169 TTVMVVGVPNVGKSSIINALRSSHMKKGKAV 199
+MVVGV GK++ L + +GK+V
Sbjct: 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV 42
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 2.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V ++G VGKSSI+
Sbjct: 7 VCLLGDTGVGKSSIMWRF 24
Score = 27.3 bits (59), Expect = 2.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V ++G VGKSSI+
Sbjct: 7 VCLLGDTGVGKSSIMWRF 24
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.1 bits (59), Expect = 2.4
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+++G VGKS +++
Sbjct: 7 YIIIGDMGVGKSCLLHQF 24
Score = 27.1 bits (59), Expect = 2.4
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+++G VGKS +++
Sbjct: 7 YIIIGDMGVGKSCLLHQF 24
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 2.5
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILP--TLQHISDNMTRYHRTEVYNTTVMV 173
+VG+ GK++ L + KG+ ++ T + + R +V + V
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 71
Score = 26.2 bits (57), Expect = 4.8
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+VG+ GK++ L + KG+ +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 43
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 2.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+VVG VGK+ ++ +
Sbjct: 12 CVVVGDGAVGKTCLLMSY 29
Score = 27.3 bits (59), Expect = 2.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+VVG VGK+ ++ +
Sbjct: 12 CVVVGDGAVGKTCLLMSY 29
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.9 bits (58), Expect = 2.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 117 VMVVGVPNVGKSSIIN 132
+ V+G GKSS+I+
Sbjct: 8 LGVLGDARSGKSSLIH 23
Score = 26.9 bits (58), Expect = 2.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 171 VMVVGVPNVGKSSIIN 186
+ V+G GKSS+I+
Sbjct: 8 LGVLGDARSGKSSLIH 23
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 2.7
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNTT 170
+++VG GK++ + + +K + + + + R T
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 59
Score = 26.9 bits (58), Expect = 2.8
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+++VG GK++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRH 23
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 26.9 bits (59), Expect = 2.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 6 KDIEKHLKNVDIVIEVHDSR---MPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKH-ES 61
K++ +D I V + MP T R HLL + +V+ +NK D +
Sbjct: 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIGVEHVVVYVNKADAVQDSEMVE 139
Query: 62 LIEEKVR 68
L+E ++R
Sbjct: 140 LVELEIR 146
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+VVG VGK+ ++ +
Sbjct: 6 CVVVGDGAVGKTCLLISY 23
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+VVG VGK+ ++ +
Sbjct: 6 CVVVGDGAVGKTCLLISY 23
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 27.2 bits (60), Expect = 2.8
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 21/112 (18%)
Query: 223 IYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFFN 282
+ I D + +P G H G D L +
Sbjct: 74 VLIGD---MGMPAGGRFNGGHA--------SHQTGLD--VDIFLQLPKTRWTSAQLL--- 117
Query: 283 LDEPSDDIVMLLAKAAIKKKWFKRAFDVSSNSVRMFPDTGEVARIFIEHFRK 334
+ D+V K + W F + +++ +V RIF+ K
Sbjct: 118 -RPQALDLVSRDGKHVVSTLWKPEIFSL----IKLAAQDKDVTRIFVNPAIK 164
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.1 bits (59), Expect = 2.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPT 150
+V GKSS+I AL + V + T
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT 38
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+V GKSS+I AL + V V
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+++G VGKS ++
Sbjct: 6 YIIIGDTGVGKSCLLLQF 23
Score = 26.8 bits (58), Expect = 2.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+++G VGKS ++
Sbjct: 6 YIIIGDTGVGKSCLLLQF 23
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQHISDNMTRYHRTEVYNT 169
++VVG VGKS++ L +H I + + ++ +T
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDT 58
Score = 26.9 bits (58), Expect = 3.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++VVG VGKS++ L
Sbjct: 6 LVVVGAGGVGKSALTIQL 23
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus
aureus [TaxId: 1280]}
Length = 111
Score = 26.3 bits (58), Expect = 2.9
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 268 YLNRTGNYRYVDFFNLDEPSDDIVMLLAKAAIKKKWF 304
Y N + Y Y+D ++ D + + + + F
Sbjct: 43 YPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELF 79
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.8 bits (58), Expect = 3.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 117 VMVVGVPNVGKSSIINAL 134
V+V+G VGKS++
Sbjct: 6 VVVLGSGGVGKSALTVQF 23
Score = 26.8 bits (58), Expect = 3.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
V+V+G VGKS++
Sbjct: 6 VVVLGSGGVGKSALTVQF 23
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 3.3
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++VVG GK+++++
Sbjct: 5 IVVVGDSQCGKTALLHVF 22
Score = 26.9 bits (58), Expect = 3.3
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++VVG GK+++++
Sbjct: 5 IVVVGDSQCGKTALLHVF 22
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 113 YNTTVMVVGVPNVGKSSIINAL 134
Y+ V+++G VGK+S++
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRY 23
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 167 YNTTVMVVGVPNVGKSSIINAL 188
Y+ V+++G VGK+S++
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRY 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 3.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 117 VMVVGVPNVGKSSIINAL 134
+ + G VGKS+++
Sbjct: 5 LAIFGRAGVGKSALVVRF 22
Score = 26.5 bits (57), Expect = 3.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+ + G VGKS+++
Sbjct: 5 LAIFGRAGVGKSALVVRF 22
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.0 bits (58), Expect = 3.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 168 NTTVMVVGVPNVGKSSIINALRSSHMKKGKAVPVGPKAGVTRSVM 212
+ V V+G + GK+++++ +R S + +A + G T M
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPM 49
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 114 NTTVMVVGVPNVGKSSIINALRSSHMKKGKA 144
+ V V+G + GK+++++ +R S + +A
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREA 35
Score = 25.8 bits (55), Expect = 7.4
Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 15 VDIVIEVHDSRMPFTGRNHLLQQSVQNIRPMVLVLNKRDLINSKHESLIEEKVRKEQSHI 74
+++++++ P T + + + P V+ NK D I+ +
Sbjct: 97 AILIVDINEGFKPQTQEALNILRMYR--TPFVVAANKIDRIHGW-----RVHEGRPFMET 149
Query: 75 SEVIFTNCRNPNCKGVQKILPTLQHISDNMTRYHRTEVYNTTVMVVGV 122
+ V +++ L R+ R + + V ++ +
Sbjct: 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPI 197
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 3.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 117 VMVVGVPNVGKSSIINAL 134
++++G VGKSS++
Sbjct: 9 LVLLGESAVGKSSLVLRF 26
Score = 26.5 bits (57), Expect = 3.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 171 VMVVGVPNVGKSSIINAL 188
++++G VGKSS++
Sbjct: 9 LVLLGESAVGKSSLVLRF 26
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.3 bits (57), Expect = 3.7
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 119 VVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH 153
VVG + GK++++ ++ +++G V + H
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40
Score = 25.6 bits (55), Expect = 6.6
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 173 VVGVPNVGKSSIINALRSSHMKKGKAV 199
VVG + GK++++ ++ +++G V
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRV 32
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 3.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
++++G GKS+I+ ++ H
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIH 26
Score = 26.5 bits (57), Expect = 3.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
++++G GKS+I+ ++ H
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIH 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 4.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 117 VMVVGVPNVGKSSIIN 132
++VVG VGKS++
Sbjct: 8 LVVVGGGGVGKSALTI 23
Score = 26.5 bits (57), Expect = 4.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 171 VMVVGVPNVGKSSIIN 186
++VVG VGKS++
Sbjct: 8 LVVVGGGGVGKSALTI 23
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 26.9 bits (59), Expect = 4.1
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 222 LIYILDTPGISLPRIDNLECGMRLAACATLQDHLVGEINIADYILFYLNRTGNYRYVDFF 281
I+ G L +I +++ + L A + + + + Y
Sbjct: 186 YIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRV-----------YPQLK 234
Query: 282 NLDEPSDDIVMLLAKAAIK 300
+ E S I + +AK K
Sbjct: 235 EIREISIQIAVEMAKYCYK 253
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.8 bits (58), Expect = 4.4
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 91 QKILPTLQHISDNMTRYHRTEVYNT-TVMVVGVPNVGKSSIINAL 134
+ ++P + + D + + + + VVG + GKSS++
Sbjct: 2 EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF 46
Score = 26.0 bits (56), Expect = 7.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 171 VMVVGVPNVGKSSIINAL 188
+ VVG + GKSS++
Sbjct: 29 IAVVGGQSAGKSSVLENF 46
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 5.3
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPILPTLQH--ISDNMTRYHRTEVYN 168
V++ G VGKS+++ LR +V D + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF 58
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.8 bits (55), Expect = 6.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 117 VMVVGVPNVGKSSIINALRSSHMKKGKAVPI 147
+++ G + GKS I+ L+S + A +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
Score = 25.8 bits (55), Expect = 6.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 171 VMVVGVPNVGKSSIINALRSSHMKKGKAVPV 201
+++ G + GKS I+ L+S + A V
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.7 bits (55), Expect = 6.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 117 VMVVGVPNVGKSSIIN 132
++V+G VGKS++
Sbjct: 6 LVVLGSGGVGKSALTV 21
Score = 25.7 bits (55), Expect = 6.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 171 VMVVGVPNVGKSSIIN 186
++V+G VGKS++
Sbjct: 6 LVVLGSGGVGKSALTV 21
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.0 bits (56), Expect = 6.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 116 TVMVVGVPNVGKSSIINALRSSH 138
T++++G VG+ I N L + H
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKH 27
Score = 26.0 bits (56), Expect = 6.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 170 TVMVVGVPNVGKSSIINALRSSH 192
T++++G VG+ I N L + H
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKH 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 25.8 bits (55), Expect = 7.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 117 VMVVGVPNVGKSSIIN 132
++VVG VGKS++
Sbjct: 7 LVVVGDGGVGKSALTI 22
Score = 25.8 bits (55), Expect = 7.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 171 VMVVGVPNVGKSSIIN 186
++VVG VGKS++
Sbjct: 7 LVVVGDGGVGKSALTI 22
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.1 bits (56), Expect = 7.0
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 117 VMVVGVPNVGKSSIINALRS--SHMKKGKAVPI-LPTLQHISDNMTRYHRTEVYNTTVMV 173
V+V G GKS+ + AL + ++ + P+ P ++ I D T + T +V
Sbjct: 31 VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVV 90
Query: 174 VGVPNVGKSSIINALRSSHMKKG 196
V + ++ AL
Sbjct: 91 DLPLGVSEDRVVGALDIERAISK 113
>d1nr4a_ d.9.1.1 (A:) Thymus and activation-regulated chemokine,
TRAC {Human (Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 24.3 bits (53), Expect = 7.2
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 70 EQSHISEVIFTN------CRNPNCKGVQKILPTLQHI 100
E ++F C +PN K V+ + LQ +
Sbjct: 31 EDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSL 67
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein
CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 24.5 bits (53), Expect = 8.0
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 80 TNCRNPNCKGVQKILPTLQHISDNMTR 106
C P+C+ ++ + L H++
Sbjct: 33 RACSLPHCRTMKNV---LNHMTHCQAG 56
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 25.7 bits (55), Expect = 8.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 117 VMVVGVPNVGKSSIINALRSSH 138
V++ G GKS+++ L H
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEH 24
Score = 25.7 bits (55), Expect = 8.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 171 VMVVGVPNVGKSSIINALRSSH 192
V++ G GKS+++ L H
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEH 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,289,654
Number of extensions: 59985
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 226
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)