BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15353
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 173/329 (52%), Gaps = 23/329 (6%)
Query: 18 LYKFSDAYIDQINREANTWTAGRNFPANLSEEYLRQF---LIADAKYFDQSDRPLPGDRK 74
+ SD I+ IN++ TW AGRNF N+ YL++ ++ K LP +R
Sbjct: 6 FHPLSDDMINYINKQNTTWQAGRNF-YNVDISYLKKLCGTVLGGPK--------LP-ERV 55
Query: 75 TYDPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQN 134
+ + + +P+ FDAREQW NC TI + D G+C + F AV A SDR CI + G+ N
Sbjct: 56 GFSEDIN--LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVN 113
Query: 135 RPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPC 194
+S E + +CC I D C+ G WNF ++G V+GG Y GC P TI PC
Sbjct: 114 VEVSAEDLLTCCGIQCGD---GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPC 170
Query: 195 SHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEIL 254
HH + P PK C+ C Y + +DKH +Y V D+E I EI
Sbjct: 171 EHHVNGARPPCTGEGDTPK--CNKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIY 227
Query: 255 AHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGP 314
+GP F ++ DF YKSGVYKH + + H+ +++GWG ENG PYWLV N+W
Sbjct: 228 KNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGG--HAIRILGWGIENGVPYWLVANSWNA 285
Query: 315 HWGDRGTVKILRGKYECAFEYLIAAGKPK 343
WGD G KILRG+ C E I AG P+
Sbjct: 286 DWGDNGFFKILRGENHCGIESEIVAGIPR 314
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 168/330 (50%), Gaps = 19/330 (5%)
Query: 15 RGELYKFSDAYIDQINREANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRK 74
R + SD ++ +N+ TW AG NF N+ YL++ + P P R
Sbjct: 4 RPSFHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLC---GTFLGG---PKPPQRV 56
Query: 75 TYDPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQN 134
+ + +P FDAREQWP C TI + D G+C + F AV A SDR CI + +
Sbjct: 57 MFTEDLK--LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVS 114
Query: 135 RPLSTEYVASCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISP 193
+S E + +CC +C C+ G WNF ++G V+GG Y GC+P +I P
Sbjct: 115 VEVSAEDLLTCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPP 170
Query: 194 CSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEI 253
C HH + P PK C C P Y + QDKH +Y V ++E I EI
Sbjct: 171 CEHHVNGSRPPCTGEGDTPK--CSKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEI 227
Query: 254 LAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWG 313
+GP F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W
Sbjct: 228 YKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWN 285
Query: 314 PHWGDRGTVKILRGKYECAFEYLIAAGKPK 343
WGD G KILRG+ C E + AG P+
Sbjct: 286 TDWGDNGFFKILRGQDHCGIESEVVAGIPR 315
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 141/260 (54%), Gaps = 8/260 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FDAREQW NC TI + D G+C + F AV A SDR CI + G+ N +S E +
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
+CC I D C+ G WNF ++G V+GG Y GC P TI PC HH +
Sbjct: 67 TCCGIQCGD---GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 123
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
P PK C+ C Y + +DKH +Y V D+E I EI +GP F
Sbjct: 124 PCTGEGDTPK--CNKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF 180
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
++ DF YKSGVYKH + + H+ +++GWG ENG PYWLV N+W WGD G K
Sbjct: 181 TVFSDFLTYKSGVYKHEAGDVMGG--HAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 238
Query: 324 ILRGKYECAFEYLIAAGKPK 343
ILRG+ C E I AG P+
Sbjct: 239 ILRGENHCGIESEIVAGIPR 258
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 141/260 (54%), Gaps = 8/260 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FDAREQW NC TI + D G+C + F AV A SDR CI + G+ N +S E +
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
+CC I D C+ G WNF ++G V+GG Y GC P TI PC HH +
Sbjct: 61 TCCGIQCGD---GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 117
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
P PK C+ C Y + +DKH +Y V D+E I EI +GP F
Sbjct: 118 PCTGEGDTPK--CNKMC-EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF 174
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
++ DF YKSGVYKH + + H+ +++GWG ENG PYWLV N+W WGD G K
Sbjct: 175 TVFSDFLTYKSGVYKHEAGDVMGG--HAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 232
Query: 324 ILRGKYECAFEYLIAAGKPK 343
ILRG+ C E I AG P+
Sbjct: 233 ILRGENHCGIESEIVAGIPR 252
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P FDAREQWP C TI + D G+C + F AV A SDR CI + + +S E +
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 144 SCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
+CC +C C+ G WNF ++G V+GG Y GC+P +I PC HH +
Sbjct: 61 TCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSR 116
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
P PK ++ P Y + QDKH +Y V ++E I EI +GP
Sbjct: 117 PPCTGEGDTPKC---SKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 173
Query: 263 FALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W WGD G
Sbjct: 174 FSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 231
Query: 323 KILRGKYECAFEYLIAAGKPK 343
KILRG+ C E + AG P+
Sbjct: 232 KILRGQDHCGIESEVVAGIPR 252
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P FDAREQWP C TI + D G+C + F AV A SDR CI + + +S E +
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 144 SCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
+CC +C C+ G WNF ++G V+GG Y GC+P +I PC HH +
Sbjct: 62 TCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSR 117
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
P PK ++ P Y + QDKH +Y V ++E I EI +GP
Sbjct: 118 PPCTGEGDTPKC---SKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 174
Query: 263 FALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W WGD G
Sbjct: 175 FSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 232
Query: 323 KILRGKYECAFEYLIAAGKPK 343
KILRG+ C E + AG P+
Sbjct: 233 KILRGQDHCGIESEVVAGIPR 253
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P FDAREQWP C TI + D G+C + F AV A SDR CI + + +S E +
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 144 SCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
+CC +C C+ G WNF ++G V+GG Y GC+P +I PC HH +
Sbjct: 63 TCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSR 118
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
P PK ++ P Y + QDKH +Y V ++E I EI +GP
Sbjct: 119 PPCTGEGDTPKC---SKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 175
Query: 263 FALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W WGD G
Sbjct: 176 FSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 233
Query: 323 KILRGKYECAFEYLIAAGKPK 343
KILRG+ C E + AG P+
Sbjct: 234 KILRGQDHCGIESEVVAGIPR 254
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 8/258 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P FD+R++WP C +I + D C + F AV A SDR CI+S G+QN LS +
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
SCC+ C C G + W++ K G VTG + GC+P C HH +
Sbjct: 63 SCCESC----GLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHH-TKGKY 117
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
P C ++ +C C Y + QDKHR +Y V ++E AI+KEI+ +GP A F
Sbjct: 118 PPCGSKIYKTPRCKQTCQK-KYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGF 176
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
+Y+DF +YKSG+YKH + L H+ ++IGWG EN PYWL+ N+W WG+ G +
Sbjct: 177 TVYEDFLNYKSGIYKHITGETLGG--HAIRIIGWGVENKAPYWLIANSWNEDWGENGYFR 234
Query: 324 ILRGKYECAFEYLIAAGK 341
I+RG+ EC+ E + AG+
Sbjct: 235 IVRGRDECSIESEVTAGR 252
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FDAREQWPNC TI + D G+C + F AV A SDR CI S G+ N +S E +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
+CC D WNF K+G V+GG Y GC+P +I PC HH +
Sbjct: 61 TCCGGECGDGCNGGEPSG---AWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRP 117
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
P PK C C P Y + +DKH +Y V +NE I EI +GP F
Sbjct: 118 PCTGEGDTPK--CSKTC-EPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAF 174
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
++Y DF YKSGVY+H S + H+ +++GWG ENGTPYWLV N+W WGD G K
Sbjct: 175 SVYSDFLLYKSGVYQHVSGEIMGG--HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK 232
Query: 324 ILRGKYECAFEYLIAAGKP 342
ILRG+ C E I AG P
Sbjct: 233 ILRGQDHCGIESEIVAGMP 251
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 140/261 (53%), Gaps = 10/261 (3%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P FDAREQWP C TI + D G+C + F AV A SDR CI + + +S E +
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 144 SCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
+CC +C C+ G WNF ++G V+GG Y GC+P +I PC H +
Sbjct: 67 TCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGAR 122
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
P PK C C P Y + QDKH +Y V ++E I EI +GP
Sbjct: 123 PPCTGEGDTPK--CSKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 179
Query: 263 FALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W WGD G
Sbjct: 180 FSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 237
Query: 323 KILRGKYECAFEYLIAAGKPK 343
KILRG+ C E + AG P+
Sbjct: 238 KILRGQDHCGIESEVVAGIPR 258
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 139/261 (53%), Gaps = 12/261 (4%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FDAREQWPNC TI + D G+C + F AV A SDR CI S G+ N +S E +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDM- 59
Query: 144 SCCKICRYDDNKSCSHGSVFRT--WNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAP 201
+ F + WNF K+G V+GG Y GC+P +I PC HH +
Sbjct: 60 ----LTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGS 115
Query: 202 TLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTA 261
P PK C C P Y + +DKH +Y V +NE I EI +GP
Sbjct: 116 RPPCTGEGDTPK--CSKTC-EPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEG 172
Query: 262 TFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGT 321
F++Y DF YKSGVY+H S + H+ +++GWG ENGTPYWLV N+W WGD G
Sbjct: 173 AFSVYSDFLLYKSGVYQHVSGEIMGG--HAIRILGWGVENGTPYWLVGNSWNTDWGDNGF 230
Query: 322 VKILRGKYECAFEYLIAAGKP 342
KILRG+ C E I AG P
Sbjct: 231 FKILRGQDHCGIESEIVAGMP 251
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 146/332 (43%), Gaps = 23/332 (6%)
Query: 13 LVRGELYKFSDAYIDQINR-EANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPG 71
LV + S A++D++NR W A + + LR+ + ++ +
Sbjct: 1 LVAEDAPVLSKAFVDRVNRLNRGIWKA--KYDGVMQNITLREAKRLNGVIKKNNNASILP 58
Query: 72 DRKTYDPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKG 131
R+ + E A +P FD+ E WPNC TI + D AC + AA A SDR C G
Sbjct: 59 KRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-G 117
Query: 132 QQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTI 191
Q+ +S + +CC C C+ G R W + G V+ DY CQP
Sbjct: 118 VQDVHISAGDLLACCSDC----GDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYPF 166
Query: 192 SPCSHHGSAPT-LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIK 250
CSHH + P C KC+ C +PT + + T + ED
Sbjct: 167 PHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPT-----IPVVNYRSWTSYALQGEDDYM 221
Query: 251 KEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVIN 310
+E+ GP F +Y+DF Y SGVY H S L H+ +L+GWGT NG PYW + N
Sbjct: 222 RELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG--HAVRLVGWGTSNGVPYWKIAN 279
Query: 311 TWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
+W WG G I RG EC E +AG P
Sbjct: 280 SWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 311
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 145/333 (43%), Gaps = 23/333 (6%)
Query: 12 TLVRGELYKFSDAYIDQINR-EANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLP 70
LV + S A++D++NR W A + + LR+ + ++ +
Sbjct: 1 ALVAEDAPVLSKAFVDRVNRLNRGIWKA--KYDGVMQNITLREAKRLNGVIKKNNNASIL 58
Query: 71 GDRKTYDPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSK 130
R+ + E A +P FD+ E WPNC TI + D AC + AA A SDR C
Sbjct: 59 PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG- 117
Query: 131 GQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPST 190
G Q+ +S + +CC C C+ G R W + G V+ DY CQP
Sbjct: 118 GVQDVHISAGDLLACCSDC----GDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYP 166
Query: 191 ISPCSHHGSAPT-LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAI 249
CSHH + P C KC C +PT + + T + ED
Sbjct: 167 FPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPT-----IPVVNYRSWTSYALQGEDDY 221
Query: 250 KKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVI 309
+E+ GP F +Y+DF Y SGVY H S L H+ +L+GWGT NG PYW +
Sbjct: 222 MRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG--HAVRLVGWGTSNGVPYWKIA 279
Query: 310 NTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
N+W WG G I RG EC E +AG P
Sbjct: 280 NSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 312
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 143/324 (44%), Gaps = 23/324 (7%)
Query: 21 FSDAYIDQINR-EANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPE 79
S A++D++NR W A + + LR+ + ++ + R+ + E
Sbjct: 32 LSKAFVDRVNRLNRGIWKA--KYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEE 89
Query: 80 YSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLST 139
A +P FD+ E WPNC TI + D AC + AA A SDR C G Q+ +S
Sbjct: 90 ARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMG-GVQDVHISA 148
Query: 140 EYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGS 199
+ +CC C C+ G R W + G V+ DY CQP CSHH
Sbjct: 149 GDLLACCSDC----GDGCNGGDPDRAWAYFSSTGLVS--DY-----CQPYPFPHCSHHSK 197
Query: 200 APT-LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGP 258
+ P C KC+ C +PT + + T + ED +E+ GP
Sbjct: 198 SKNGYPPCSQFNFDTPKCNYTCDDPT-----IPVVNYRSWTSYALQGEDDYMRELFFRGP 252
Query: 259 TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGD 318
F +Y+DF Y SGVY H S L H+ +L+GWGT NG PYW + N+W WG
Sbjct: 253 FEVAFDVYEDFIAYNSGVYHHVSGQYLGG--HAVRLVGWGTSNGVPYWKIANSWNTEWGM 310
Query: 319 RGTVKILRGKYECAFEYLIAAGKP 342
G I RG EC E +AG P
Sbjct: 311 DGYFLIRRGSSECGIEDGGSAGIP 334
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 111/208 (53%), Gaps = 10/208 (4%)
Query: 137 LSTEYVASCC-KICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCS 195
+S E + +CC +C C+ G WNF ++G V+GG Y GC+P +I PC
Sbjct: 5 VSAEDLLTCCGSMC----GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCE 60
Query: 196 HHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILA 255
HH + P PK C C P Y + QDKH +Y V ++E I EI
Sbjct: 61 HHVNGSRPPCTGEGDTPK--CSKIC-EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYK 117
Query: 256 HGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPH 315
+GP F++Y DF YKSGVY+H + + H+ +++GWG ENGTPYWLV N+W
Sbjct: 118 NGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGG--HAIRILGWGVENGTPYWLVANSWNTD 175
Query: 316 WGDRGTVKILRGKYECAFEYLIAAGKPK 343
WGD G KILRG+ C E + AG P+
Sbjct: 176 WGDNGFFKILRGQDHCGIESEVVAGIPR 203
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Query: 165 TWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPT 224
WNF K+G V+GG Y GC+P +I PC HH + P PK C+ C P
Sbjct: 31 AWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPK--CNKTC-EPG 87
Query: 225 YGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAK 284
Y + +DKH +Y V +NE I EI +GP F++Y DF YKSGVY+H S
Sbjct: 88 YSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEI 147
Query: 285 LENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
+ H+ +++GWG ENGTPYWLV N+W WGD G KILRG+ C E I AG P
Sbjct: 148 MGG--HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 203
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 130/337 (38%), Gaps = 56/337 (16%)
Query: 18 LYKFSDAYIDQINREANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYD 77
LYK+ ++ IN +WTA L + + + RP P
Sbjct: 143 LYKYDHNFVKAINAIQKSWTATTYMEYETLT--LGDMIRRSGGHSRKIPRPKPAPLTAEI 200
Query: 78 PEYSATVPDRFDAREQWPNCGTIGHVP---DTGACAAPHIFAAVGAFSDRRCIKSKGQQN 134
+ +P +D W N I V + +C + + FA++G R I + Q
Sbjct: 201 QQKILFLPTSWD----WRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQT 256
Query: 135 RPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYG-DRTGCQP--STI 191
LS + V SC + + C G F + D+G C P T
Sbjct: 257 PILSPQEVVSCSQYA-----QGCEGG-------FPYLIAGKYAQDFGLVEEACFPYTGTD 304
Query: 192 SPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKK 251
SPC K C ++ ++ ++ NE +K
Sbjct: 305 SPC--------------------KMKEDCFR------YYSSEYHYVGGFYGGCNEALMKL 338
Query: 252 EILAHGPTTATFALYDDFYHYKSGVYKHTSNAK----LENYLHSGKLIGWGTE--NGTPY 305
E++ HGP F +YDDF HYK G+Y HT E H+ L+G+GT+ +G Y
Sbjct: 339 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDY 398
Query: 306 WLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
W+V N+WG WG+ G +I RG ECA E + A P
Sbjct: 399 WIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 435
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 136/339 (40%), Gaps = 61/339 (17%)
Query: 18 LYKFSDAYIDQINREANTWTAG--RNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKT 75
LY ++ IN +WTA R + E+ + LI + + + RP P
Sbjct: 143 LYSHHHNFVKAINSVQKSWTATTYRRY-----EKLSIRDLIRRSGHSGRILRPKPAPITD 197
Query: 76 YDPEYSATVPDRFDAREQWPNCGTIGHVP---DTGACAAPHIFAAVGAFSDRRCIKSKGQ 132
+ ++P+ +D W N I V + +C + + FA++G R I +
Sbjct: 198 EIQQQILSLPESWD----WRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNS 253
Query: 133 QNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGD-RTGCQP--S 189
Q LS + V SC + C G F + D+G C P +
Sbjct: 254 QTPILSPQEVVSCSPYA-----QGCDGG-------FPYLIAGKYAQDFGVVEENCFPYTA 301
Query: 190 TISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAI 249
T +PC PK C ++ ++ ++ NE +
Sbjct: 302 TDAPCK----------------PKENC----------LRYYSSEYYYVGGFYGGCNEALM 335
Query: 250 KKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAK----LENYLHSGKLIGWGTE--NGT 303
K E++ HGP F ++DDF HY SG+Y HT + E H+ L+G+G + G
Sbjct: 336 KLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGL 395
Query: 304 PYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
YW+V N+WG WG+ G +I RG ECA E + A P
Sbjct: 396 DYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIP 434
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 223 PTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSN 282
P F +D T+ ++E+A+ + + + P + F + +DF Y+ G+Y TS
Sbjct: 103 PDKAIAFVKDVANITM-----NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC 157
Query: 283 AKLENYL-HSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYECAF 333
K + + H+ +G+G ENG PYW+V N+WGP WG G I RGK C
Sbjct: 158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 209
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 112/293 (38%), Gaps = 45/293 (15%)
Query: 35 TWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLP-GDRKTYDPEYSATVPDRFDAREQ 93
++T G N +++ E ++ + D +P R+ S P FD R+Q
Sbjct: 66 SYTLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQ 125
Query: 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153
G + V + G+C + F++ GA + I + + +S + + C +
Sbjct: 126 ----GMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVP-----N 176
Query: 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK 213
CS G + + ++ + G + D G P ++ + H NQ +
Sbjct: 177 ALGCSGGWMNDAFTYVAQNGGI------DSEGAYPYEMADGNCHYDP-------NQVAAR 223
Query: 214 LKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYK 273
L + + P +E+ + + GP F D F Y
Sbjct: 224 LSGYVYLSGP---------------------DENMLADMVATKGPVAVAFDADDPFGSYS 262
Query: 274 SGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILR 326
GVY + + + H+ ++G+G ENG YWLV N+WG WG G KI R
Sbjct: 263 GGVY-YNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIAR 314
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 56/297 (18%)
Query: 35 TWTAGRNFPANLS-EEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQ 93
T+T G N +++ EE+ ++L ++ D +P Y+ A VPD+ D RE
Sbjct: 48 TYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVP-----YEANNRA-VPDKIDWRE- 100
Query: 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153
G + V D G C + F+ G + + + S + + C +
Sbjct: 101 ---SGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNER--TSISFSEQQLVDCSRPW---G 152
Query: 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK 213
N C G + + +L + G T Y P
Sbjct: 153 NNGCGGGLMENAYQYLKQFGLETESSY-------------------------------PY 181
Query: 214 LKCHTRCT-NPTYGRGFFQDKHRTTLTYWV-DDNEDAIKKEILAHGPTTATFALYDDFYH 271
+C N G + T Y V +E +K + A GP + DF
Sbjct: 182 TAVEGQCRYNKQLGVA------KVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMM 235
Query: 272 YKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGK 328
Y+SG+Y+ + + L H+ +G+GT+ GT YW+V N+WG WG+RG ++++R +
Sbjct: 236 YRSGIYQSQTCSPLR-VNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNR 291
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 47/254 (18%)
Query: 76 YDPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNR 135
Y PE+ PD D R++ G + V + G C + F++VGA + +K K +
Sbjct: 92 YIPEWEGRAPDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLL 145
Query: 136 PLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCS 195
LS + + C +N C G + + ++ K + D G + S C
Sbjct: 146 NLSPQNLVDCV-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CM 196
Query: 196 HHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILA 255
++ PT + KC RG+ + + NE A+K+ +
Sbjct: 197 YN---PTGKAA--------KC----------RGYREIP---------EGNEKALKRAVAR 226
Query: 256 HGPTTATF-ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGP 314
GP + A F Y GVY + + +N H+ +G+G + G +W++ N+WG
Sbjct: 227 VGPVSVAIDASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 285
Query: 315 HWGDRGTVKILRGK 328
+WG++G + + R K
Sbjct: 286 NWGNKGYILMARNK 299
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ + S S+ A L
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYIIDNKGID---------------SDASYPYKAMDL 97
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
+ K C ++ T YGR ED +K+ + GP +
Sbjct: 98 KCQYDSKYRAATC-SKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 82 ATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEY 141
A +PD D RE+ G + V G+C A F+AVGA + +K K + LS +
Sbjct: 1 AALPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQ--LKLKTGKLVSLSAQN 54
Query: 142 VASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAP 201
+ C +Y NK C+ G + + ++ D G P
Sbjct: 55 LVDC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ-- 99
Query: 202 TLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTA 261
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 100 ---KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSV 138
Query: 262 TF-ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G
Sbjct: 139 GVDARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEG 196
Query: 321 TVKILRGK 328
+++ R K
Sbjct: 197 YIRMARNK 204
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 51/296 (17%)
Query: 34 NTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQ 93
+++ G N +++ E + L++ + Q R + TY + +PD D RE+
Sbjct: 55 HSYDLGMNHLGDMTSEEVMS-LMSSLRVPSQWQRNI-----TYKSNPNRILPDSVDWREK 108
Query: 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153
G + V G+C A F+AVGA + +K K + LS + + C
Sbjct: 109 ----GCVTEVKYQGSCGAAWAFSAVGALEAQ--LKLKTGKLVSLSAQNLVDCS--TEKYG 160
Query: 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK 213
NK C+ G + + ++ D G P C+ +
Sbjct: 161 NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYK-----AMDQKCQYDSKYR 204
Query: 214 LKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF-ALYDDFYHY 272
++ T YGR ED +K+ + GP + A + F+ Y
Sbjct: 205 AATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGVDARHPSFFLY 246
Query: 273 KSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGK 328
+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +++ R K
Sbjct: 247 RSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK 300
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQP-STISPCSHHGSAPT 202
C + NK C+ G + + ++ + D P + + SA
Sbjct: 55 DCST--KKYGNKGCNGGFMTTAFQYIIDNKGI------DSDASYPYKAMDQKCQYDSAYR 106
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
+C + T YGR ED +K+ + GP +
Sbjct: 107 AATCR-----------KYTELPYGR------------------EDVLKEAVANKGPVSVG 137
Query: 263 F-ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGT 321
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G++G
Sbjct: 138 VDARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGY 195
Query: 322 VKILRGK 328
+++ R K
Sbjct: 196 IRMARNK 202
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 83 TVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYV 142
TVP D W G + V D G C + F+ + A IK+ + LS + +
Sbjct: 1 TVPASVD----WRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKT--NKLVSLSEQEL 54
Query: 143 ASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
C D N+ C+ G + + F+ +RG +T + ++ G+
Sbjct: 55 VDC----DTDQNQGCNGGLMDYAFEFIKQRGGIT----------TEANYPYEAYDGTCDV 100
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
S EN + H +++E+A+ K + + A
Sbjct: 101 --SKENAPAVSIDGHENVP---------------------ENDENALLKAVANQPVSVAI 137
Query: 263 FALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE-NGTPYWLVINTWGPHWGDRGT 321
A DF Y GV+ + +L+ H ++G+GT +GT YW V N+WGP WG++G
Sbjct: 138 DAGGSDFQFYSEGVFTGSCGTELD---HGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGY 194
Query: 322 VKILRG 327
+++ RG
Sbjct: 195 IRMERG 200
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 63/287 (21%)
Query: 67 RPLPGD------RKTYDPEYSATVPDRFDAREQWPNCGTIG--------HVPD-TGACAA 111
RPL GD R TY + P W N + H+P G+C A
Sbjct: 9 RPLRGDGLAPLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWA 68
Query: 112 PHIFAAVGAFSDRRCIKSKGQ-QNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLH 170
A+ A +DR IK KG + LS + V C + SC G+ W++ H
Sbjct: 69 ---HASTSAMADRINIKRKGAWPSTLLSVQNVIDC------GNAGSCEGGNDLSVWDYAH 119
Query: 171 KRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFF 230
+ G D T C+++ ++Q+ K C F
Sbjct: 120 QHG------IPDET---------CNNY-------QAKDQECDKFNQCGTCNE-------F 150
Query: 231 QDKH--RTTLTYWVDD-----NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNA 283
++ H R + V D + + EI A+GP + + +Y G+Y +
Sbjct: 151 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDT 210
Query: 284 KLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYE 330
N++ S + GWG +GT YW+V N+WG WG+RG ++I+ Y+
Sbjct: 211 TYINHVVS--VAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK 255
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 55
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 56 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 98
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 99 -KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 139
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 197
Query: 323 KILRGK 328
++ R K
Sbjct: 198 RMARNK 203
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGASWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 97
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 98 -KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 55
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 56 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 98
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 99 -KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 139
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 197
Query: 323 KILRGK 328
++ R K
Sbjct: 198 RMARNK 203
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 55
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 56 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYP-----YKAMD 97
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 98 QKCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 139
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 197
Query: 323 KILRGK 328
++ R K
Sbjct: 198 RMARNK 203
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYP-----YKAMD 96
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 97 QKCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 4 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 57
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 58 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 100
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 101 -KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 141
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 142 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 199
Query: 323 KILRGK 328
++ R K
Sbjct: 200 RMARNK 205
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVTLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 97
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 98 -KCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYPYKAMDQ---- 97
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + + T YGR ED +K+ + GP +
Sbjct: 98 -KCQYDSKYRAATCRKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G++G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 45/246 (18%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+PD D RE+ G + V G+C A F+AVGA + +K K + LS + +
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSAVGALEAQ--LKLKTGKLVSLSAQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +Y NK C+ G + + ++ D G P
Sbjct: 55 DC-STEKYG-NKGCNGGFMTTAFQYII-----------DNKGIDSDASYP-----YKAMD 96
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
C+ + ++ T YGR ED +K+ + GP +
Sbjct: 97 QKCQYDSKYRAATCSKYTELPYGR------------------EDVLKEAVANKGPVSVGV 138
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A + F+ Y+SGVY S +N H ++G+G NG YWLV N+WG ++G+ G +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCT--QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYI 196
Query: 323 KILRGK 328
++ R K
Sbjct: 197 RMARNK 202
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 49/238 (20%)
Query: 102 HVPD-TGACAAPHIFAAVGAFSDRRCIKSKGQQ-NRPLSTEYVASCCKICRYDDNKSCSH 159
H+P G+C A A+ A +DR IK KG + LS + V C + SC
Sbjct: 23 HIPQYCGSCWA---HASTSAMADRINIKRKGAWPSTLLSVQNVIDC------GNAGSCEG 73
Query: 160 GSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTR 219
G+ W++ H+ G D T C+++ ++Q+ K
Sbjct: 74 GNDLSVWDYAHQHG------IPDET---------CNNY-------QAKDQECDKFNQCGT 111
Query: 220 CTNPTYGRGFFQDKH--RTTLTYWVDD-----NEDAIKKEILAHGPTTATFALYDDFYHY 272
C F++ H R + V D + + EI A+GP + + +Y
Sbjct: 112 CNE-------FKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANY 164
Query: 273 KSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYE 330
G+Y + N++ S + GWG +GT YW+V N+WG WG+RG ++I+ Y+
Sbjct: 165 TGGIYAEYQDTTYINHVVS--VAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK 220
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
PD D R++ G + V + G C + F++VGA + +K K + LS + +
Sbjct: 1 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +N C G + + ++ K + D G + S C ++ PT
Sbjct: 55 DCV-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CMYN---PTG 102
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
+ KC RG+ + + NE A+K+ + GP +
Sbjct: 103 KAA--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAI 135
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A F Y GVY + + +N H+ +G+G + G +W++ N+WG +WG++G +
Sbjct: 136 DASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYI 194
Query: 323 KILRGK 328
+ R K
Sbjct: 195 LMARNK 200
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
PD D R++ G + V + G C + F++VGA + +K K + LS + +
Sbjct: 3 APDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLV 56
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +N C G + + ++ K + D G + S C ++ PT
Sbjct: 57 DCV-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CMYN---PTG 104
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
+ KC RG+ + + NE A+K+ + GP +
Sbjct: 105 KAA--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAI 137
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A F Y GVY + + +N H+ +G+G + G +W++ N+WG +WG++G +
Sbjct: 138 DASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYI 196
Query: 323 KILRGK 328
+ R K
Sbjct: 197 LMARNK 202
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
PD D RE+ G + V + G C + F++VGA + +K K + LS + +
Sbjct: 1 APDSVDYREK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL 203
C +N C G + + ++ K + D G + S C ++ PT
Sbjct: 55 DCV-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CMYN---PTG 102
Query: 204 PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
+ KC RG+ + + NE A+K+ + GP +
Sbjct: 103 KAA--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAI 135
Query: 264 -ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTV 322
A F Y GVY + + +N H+ +G+G G +W++ N+WG +WG G +
Sbjct: 136 DASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYI 194
Query: 323 KILRGK 328
K+ R K
Sbjct: 195 KMARNK 200
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 47/245 (19%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS 144
PD D R++ G + V + G C + F++VGA + +K K + LS + +
Sbjct: 1 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVD 54
Query: 145 CCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP 204
C +N C G + + ++ K + D G + S C ++ PT
Sbjct: 55 CV-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CMYN---PTGK 102
Query: 205 SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF- 263
+ KC RG+ + + NE A+K+ + GP +
Sbjct: 103 AA--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAID 135
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
A F Y GVY + + +N H+ +G+G + G +W++ N+WG +WG++G +
Sbjct: 136 ASLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYIL 194
Query: 324 ILRGK 328
+ R K
Sbjct: 195 MARNK 199
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS 144
PD D R++ G + V + G C + F++VGA + +K K + LS + +
Sbjct: 2 PDSIDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVD 55
Query: 145 CCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP 204
C +N C G + + ++ + + D G S C ++ PT
Sbjct: 56 CV-----SENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDES----CMYN---PTGK 103
Query: 205 SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF- 263
+ KC RG+ + + NE A+K+ + GP +
Sbjct: 104 AA--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAID 136
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
A F Y GVY + N +N H+ +G+G + G +W++ N+WG WG++G +
Sbjct: 137 ASLTSFQFYSKGVY-YDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYIL 195
Query: 324 ILRGK 328
+ R K
Sbjct: 196 MARNK 200
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKG 131
+P+ FDAREQWPNC TI + D G+C + F AV A SDR CI S G
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNG 48
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153
W G + V + C + F+A GA + K+ + LS + + C R
Sbjct: 7 WRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTG--KLVSLSEQNLVDCS---RPQG 61
Query: 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK 213
N+ C+ G + R + ++ + G + S + P ++
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLD----------------------SEESYPYVAVDEI-- 97
Query: 214 LKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGP-TTATFALYDDFYHY 272
C R N T T E A+ K + GP + A A + F Y
Sbjct: 98 --CKYRPENSV--------AQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFY 147
Query: 273 KSGVYKHTSNAKLENYLHSGKLIGWGTE----NGTPYWLVINTWGPHWGDRGTVKILRGK 328
KSG+Y + +N H ++G+G E + + YWLV N+WGP WG G VKI + K
Sbjct: 148 KSGIY-FEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 86 DRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASC 145
D D R++ G + V + G C + F++VGA + +K K + LS + + C
Sbjct: 1 DSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQ--LKKKTGKLLNLSPQNLVDC 54
Query: 146 CKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPS 205
+N C G + + ++ K + D G + S C ++ PT +
Sbjct: 55 V-----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEES----CMYN---PTGKA 102
Query: 206 CENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF-A 264
KC RG+ + + NE A+K+ + GP + A
Sbjct: 103 A--------KC----------RGYREIP---------EGNEKALKRAVARVGPVSVAIDA 135
Query: 265 LYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKI 324
F Y GVY + + +N H+ +G+G + G +W++ N+WG +WG++G + +
Sbjct: 136 SLTSFQFYSKGVY-YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 194
Query: 325 LRGK 328
R K
Sbjct: 195 ARNK 198
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 45/240 (18%)
Query: 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153
W G + V + C + F+A GA + K+ + LS + + C R
Sbjct: 7 WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTG--KLVSLSEQNLVDCS---RPQG 61
Query: 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK 213
N+ C+ G + R + ++ + G + S + P ++
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLD----------------------SEESYPYVAVDEI-- 97
Query: 214 LKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF-ALYDDFYHY 272
C R N T T E A+ K + GP + A + F Y
Sbjct: 98 --CKYRPENSV--------AQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFY 147
Query: 273 KSGVYKHTSNAKLENYLHSGKLIGWGTE----NGTPYWLVINTWGPHWGDRGTVKILRGK 328
KSG+Y + +N H ++G+G E + + YWLV N+WGP WG G VKI + K
Sbjct: 148 KSGIY-FEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 243 DDNEDAIKKEILAHGPTTATF-ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTEN 301
+ NE A+K+ + A GP + A F Y +GVY + N + H+ +G+G +
Sbjct: 115 EGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVY-YDENCSSDALNHAVLAVGYGIQA 173
Query: 302 GTPYWLVINTWGPHWGDRGTVKILRGK 328
G +W++ N+WG WG+ G + + R K
Sbjct: 174 GNKHWIIKNSWGESWGNAGYILMARNK 200
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE A++ + + A A +F HY SG++ ++ H+ ++G+GTE G
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD---HAVTIVGYGTEGGI 175
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG WG+ G ++I R
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE A++ + + A A +F HY SG++ ++ H+ ++G+GTE G
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD---HAVTIVGYGTEGGI 175
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG WG+ G ++I R
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQR 198
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 245 NEDAIKKEILAHGPTTATF-ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
NE +++K + A+ P + T A DF Y+SG++ + N H+ ++G+GTEN
Sbjct: 119 NEQSLQKAV-ANQPVSVTMDAAGRDFQLYRSGIFTGSCNISAN---HALTVVGYGTENDK 174
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
+W+V N+WG +WG+ G ++ R
Sbjct: 175 DFWIVKNSWGKNWGESGYIRAER 197
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE A++ + + A A D F Y SG++ ++ H+ ++G+GTE G
Sbjct: 119 NNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAID---HAVTIVGYGTEGGI 175
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
YW+V N+W WG+ G ++ILR
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRILR 198
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 230 FQDKHRTTLTYWVD---DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLE 286
QD+ T+ + + +NE A++ + + A A D F Y SG++ ++
Sbjct: 102 LQDQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVD 161
Query: 287 NYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILR 326
H+ ++G+GTE G YW+V N+W WG+ G ++ILR
Sbjct: 162 ---HAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILR 198
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE+A+K + + A A F HYK G++ KL H ++G+G +
Sbjct: 115 NENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLN---HGVVIVGYGKD---- 167
Query: 305 YWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG HWG++G ++ R
Sbjct: 168 YWIVRNSWGRHWGEQGYTRMKR 189
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE+A+KK + + A A F HYKSG++ KL H ++G+ +
Sbjct: 115 NENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLN---HGVVIVGYWKD---- 167
Query: 305 YWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG +WG++G +++ R
Sbjct: 168 YWIVRNSWGRYWGEQGYIRMKR 189
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE A++ + + + A F HY SG++ H ++G+GT++G
Sbjct: 115 NNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQN---HGVVIVGYGTQSGK 171
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG +WG++G + + R
Sbjct: 172 NYWIVRNSWGQNWGNQGYIWMER 194
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 28/44 (63%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCI 127
+P FDAREQWP C TI + D G+C + F AV A SDR CI
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE A+K+ + T A A F Y SG++ KL H ++G+
Sbjct: 115 NEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLN---HGVTIVGYQAN---- 167
Query: 305 YWLVINTWGPHWGDRGTVKILR 326
YW+V N+WG +WG++G +++LR
Sbjct: 168 YWIVRNSWGRYWGEKGYIRMLR 189
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
+EDAI + +GP A F Y G+ ++ +L+ H L+G+ + P
Sbjct: 121 DEDAIAAYLAENGPL-AIAVDATSFMDYNGGILTSCTSEQLD---HGVLLVGYNDASNPP 176
Query: 305 YWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAA 339
YW++ N+W WG+ G ++I +G +C +++
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSS 211
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 290 HSGKLIGWGTEN--GTPYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342
H+ L+G+GT++ G YW+V N+WG WG+ G +I RG ECA E + A P
Sbjct: 11 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 65
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 114/303 (37%), Gaps = 65/303 (21%)
Query: 35 TWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQW 94
++T N +++ E RQ + Q+ +P G K + P D RE+
Sbjct: 51 SFTMAMNAFGDMTSEEFRQVMNGL-----QNRKPRKG--KVFQEPLFYEAPRSVDWREK- 102
Query: 95 PNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDN 154
G + V + G C + F+A GA + K+ + LS + + C + N
Sbjct: 103 ---GYVTPVKNQGQCGSSWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGP---EGN 154
Query: 155 KSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKL 214
+ C+ G + + ++ G + D P T SC+
Sbjct: 155 EGCNGGLMDYAFQYVQDNGGL------DSEESYPYE----------ATEESCK------- 191
Query: 215 KCHTRCTNPTYG----RGFFQDKHRTTLTYWVDDNEDAIKKEILAHGP-TTATFALYDDF 269
NP Y GF + E A+ K + GP + A A ++ F
Sbjct: 192 ------YNPKYSVANDAGFVD----------IPKQEKALMKAVATVGPISVAIDAGHESF 235
Query: 270 YHYKSGVYKHTSNAKLENYLHSGKLIGWGTE----NGTPYWLVINTWGPHWGDRGTVKIL 325
YK G+Y + E+ H ++G+G E +G YWLV N+WG WG G VK+
Sbjct: 236 LFYKEGIY-FEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMA 294
Query: 326 RGK 328
+ +
Sbjct: 295 KDR 297
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 229 FFQDKHRTTLTYWVD---DNEDAIKKEILAHGPTTATFALYDDFYHYKSGV-YKHTSNAK 284
F + TTL+ + D +E+++ + GP D+ Y G+ Y T N
Sbjct: 213 FDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQTCNQS 272
Query: 285 LENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILR 326
N H ++G+G++NG YW++ N+WG WG+ G + +R
Sbjct: 273 DLN--HGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVR 312
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 269 FYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILR 326
F YKSGV+ KL+ H+ +G+GT +G Y ++ N+WGP+WG++G +++ R
Sbjct: 141 FQLYKSGVFDGPCGTKLD---HAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 246 EDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWG------- 298
++ +K+ + GP + + A+ DDF YK G++ +L H+ L+G+G
Sbjct: 133 DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLN---HAVMLVGFGMKEIVNP 189
Query: 299 -TENGTP--YWLVINTWGPHWGDRGTVKI 324
T+ G Y+++ N+WG WG+RG + I
Sbjct: 190 LTKKGEKHYYYIIKNSWGQQWGERGFINI 218
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 246 EDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWG------- 298
++ +K+ + GP + + A+ DDF YK G++ +L H+ L+G+G
Sbjct: 132 DNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLN---HAVMLVGFGMKEIVNP 188
Query: 299 -TENGTP--YWLVINTWGPHWGDRGTVKI 324
T+ G Y+++ N+WG WG+RG + I
Sbjct: 189 LTKKGEKHYYYIIKNSWGQQWGERGFINI 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT-ENG 302
++E+ + + + + A A F Y GV+ +L+ H ++G+G E+G
Sbjct: 124 NSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELD---HGVAVVGYGVAEDG 180
Query: 303 TPYWLVINTWGPHWGDRGTVKILR 326
YW V N+WGP WG++G +++ +
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEK 204
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 153 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 211
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 212 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 241
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 173
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 203
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 173
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 203
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 174
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 204
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 41/181 (22%)
Query: 103 VPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSV 162
V + +C + + FA++G R I + Q LS + V SC + + C G
Sbjct: 19 VRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYA-----QGCEGG-- 71
Query: 163 FRTWNFLHKRGSVTGGDYG-DRTGCQP--STISPCSHHGSAPTLPSCENQKVPKLKCHTR 219
F + D+G C P T SPC K
Sbjct: 72 -----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC--------------------KMKED 106
Query: 220 CTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKH 279
C ++ ++ ++ NE +K E++ HGP F +YDDF HYK G+Y H
Sbjct: 107 CFR------YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH 160
Query: 280 T 280
T
Sbjct: 161 T 161
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 173
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 203
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 173
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 174 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 203
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 42/243 (17%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS 144
P+ +D W G I V G C + F+A GA I + + LS + +
Sbjct: 3 PESWD----WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVS--LSEQELID 56
Query: 145 CCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP 204
C D+++ C +G ++++ ++ K G + S P
Sbjct: 57 CV-----DESEGCYNGWHYQSFEWVVKHGGIA----------------------SEADYP 89
Query: 205 -SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATF 263
+ K + + T YG ++ + E +++ +L + +
Sbjct: 90 YKARDGKCKANEIQDKVTIDNYGVQILSNESTESEA------ESSLQSFVLEQPISVSID 143
Query: 264 ALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323
A DF+ Y G+Y + + H ++G+G+E+G YW+ N+WG WG G ++
Sbjct: 144 A--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIR 201
Query: 324 ILR 326
I R
Sbjct: 202 IQR 204
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 174
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 175 STESDNNKYWLVKNSWGEEWGMGGYVKMAK 204
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 245 NEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE--- 300
E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 301 -NGTPYWLVINTWGPHWGDRGTVKILR 326
+ YWLV N+WG WG G VK+ +
Sbjct: 177 SDDNKYWLVKNSWGEEWGMGGYVKMAK 203
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300
+ E A+ K + GP + A A ++ F YK G+Y + E+ H ++G+G E
Sbjct: 211 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FEPDCSSEDMDHGVLVVGYGFE 269
Query: 301 ----NGTPYWLVINTWGPHWGDRGTVKILRGK 328
+ YWLV N+WG WG G VK+ + +
Sbjct: 270 STESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 100/256 (39%), Gaps = 36/256 (14%)
Query: 96 NCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNK 155
NC + V D G C IFA+ RC+K G + +S YVA+C K D
Sbjct: 17 NCISNLQVEDQGNCDTSWIFASKYHLETIRCMK--GYEPTKISALYVANCYKGEHKD--- 71
Query: 156 SCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVP--- 212
C GS FL DYG + P ++ P E+ +
Sbjct: 72 RCDEGS--SPMEFLQ-----IIEDYG---FLPAESNYPYNYVKVGEQCPKVEDHWMNLWD 121
Query: 213 --KLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDA----IKKEILAHGPTTATFALY 266
K+ + N G+G+ + DN DA IK E++ G A +
Sbjct: 122 NGKILHNKNEPNSLDGKGYTAYESER-----FHDNMDAFVKIIKTEVMNKGSVIA-YIKA 175
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP-----YWLVINTWGPHWGDRGT 321
++ Y+ K + + H+ ++G+G + YW+V N+WGP+WGD G
Sbjct: 176 ENVMGYEFSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGY 235
Query: 322 VKI-LRGKYECAFEYL 336
K+ + G C F ++
Sbjct: 236 FKVDMYGPTHCHFNFI 251
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 100/256 (39%), Gaps = 36/256 (14%)
Query: 96 NCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNK 155
NC + V D G C IFA+ RC+K G + +S YVA+C K D
Sbjct: 18 NCISNLQVEDQGNCDTSWIFASKYHLETIRCMK--GYEPTKISALYVANCYKGEHKD--- 72
Query: 156 SCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVP--- 212
C GS FL DYG + P ++ P E+ +
Sbjct: 73 RCDEGS--SPMEFLQ-----IIEDYG---FLPAESNYPYNYVKVGEQCPKVEDHWMNLWD 122
Query: 213 --KLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDA----IKKEILAHGPTTATFALY 266
K+ + N G+G+ + DN DA IK E++ G A +
Sbjct: 123 NGKILHNKNEPNSLDGKGYTAYESER-----FHDNMDAFVKIIKTEVMNKGSVIA-YIKA 176
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP-----YWLVINTWGPHWGDRGT 321
++ Y+ K + + H+ ++G+G + YW+V N+WGP+WGD G
Sbjct: 177 ENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGY 236
Query: 322 VKI-LRGKYECAFEYL 336
K+ + G C F ++
Sbjct: 237 FKVDMYGPTHCHFNFI 252
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 242 VDDNEDAIKKEILAHGP-TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWG-T 299
+ E A+ K + GP + A A ++ F YK G+Y +S+ + H+ ++G+G
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIY-FSSDCSSSSLNHAMLVVGYGFI 173
Query: 300 ENGTPYWLVINTWGPHWGDRGTVKILR 326
N YWLV N+WG WG G VK+ +
Sbjct: 174 SNNQKYWLVKNSWGEEWGMGGYVKMAK 200
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 92/251 (36%), Gaps = 46/251 (18%)
Query: 83 TVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYV 142
+P A W + G + V D C + F+ GA C K+ + LS + +
Sbjct: 2 VLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTG--KLVSLSEQEL 59
Query: 143 ASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPT 202
C R + N+SCS G + + ++ G + D + P
Sbjct: 60 MDCS---RAEGNQSCSGGEMNDAFQYVLDSGGICSED-------------------AYPY 97
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTT-A 261
L E +C + F+D R + +A K LA P + A
Sbjct: 98 LARDE-------ECRAQSCEKVVKILGFKDVPRRS---------EAAMKAALAKSPVSIA 141
Query: 262 TFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT--ENGTPYWLVINTWGPHWGDR 319
A F Y GV+ + L+ H L+G+GT E+ +W++ N+WG WG
Sbjct: 142 IEADQMPFQFYHEGVFDASCGTDLD---HGVLLVGYGTDKESKKDFWIMKNSWGTGWGRD 198
Query: 320 GTVKILRGKYE 330
G + + K E
Sbjct: 199 GYMYMAMHKGE 209
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 85/247 (34%), Gaps = 51/247 (20%)
Query: 90 AREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKIC 149
A W G + V D G C + F+A+G + + N LS + + SC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTN--LSEQMLVSCDKT- 59
Query: 150 RYDDNKSCSHGSVFRT--WNFLHKRGSVTGGD---YGDRTGCQPSTISPCSHHGSAPTLP 204
+ CS G + W G+V D Y G P PC+ G
Sbjct: 60 ----DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCTTSG------ 105
Query: 205 SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFA 264
HT T QD E I + +GP A
Sbjct: 106 ------------HTVGATITGHVELPQD-------------EAQIAAWLAVNGPV-AVAV 139
Query: 265 LYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKI 324
+ Y GV + +L+ H L+G+ PYW++ N+W WG+ G ++I
Sbjct: 140 DASSWMTYTGGVMTSCVSEQLD---HGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRI 196
Query: 325 LRGKYEC 331
+G +C
Sbjct: 197 AKGSNQC 203
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 65/320 (20%)
Query: 13 LVRGELYKFSDAYIDQINREANTWTAGRNFPANLSEEYLRQFLIADAKYFDQSDRPLPGD 72
+ R E++K + YID+ N++ N++ G N A++S + ++ KY + G+
Sbjct: 84 IYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKE------KYTGS----IAGN 133
Query: 73 RKTYDPEYSATVPD---RFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKS 129
T + Y + D W G + V + G+C + F+AV IK
Sbjct: 134 YTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIES--IIKI 191
Query: 130 KGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPS 189
+ S + + C D +S YG G S
Sbjct: 192 RTGNLNEYSEQELLDC-------DRRS-----------------------YGCNGGYPWS 221
Query: 190 TISPCSHHGS--APTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNED 247
+ + +G T P Q+ C +R P + D R Y NE
Sbjct: 222 ALQLVAQYGIHYRNTYPYEGVQRY----CRSREKGPYAAK---TDGVRQVQPY----NEG 270
Query: 248 AIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWL 307
A+ I + A DF Y+ G++ K++ H+ +G+G Y L
Sbjct: 271 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN----YIL 323
Query: 308 VINTWGPHWGDRGTVKILRG 327
+ N+WG WG+ G ++I RG
Sbjct: 324 IRNSWGTGWGENGYIRIKRG 343
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 85/247 (34%), Gaps = 51/247 (20%)
Query: 90 AREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKIC 149
A W G + V D G C + F+A+G + + N LS + + SC K
Sbjct: 3 AAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTN--LSEQMLVSCDKT- 59
Query: 150 RYDDNKSCSHGSVFRT--WNFLHKRGSVTGGD---YGDRTGCQPSTISPCSHHGSAPTLP 204
+ CS G + W G+V D Y G P PC+ G
Sbjct: 60 ----DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISP----PCTTSG------ 105
Query: 205 SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFA 264
HT T QD+ + I + +GP A
Sbjct: 106 ------------HTVGATITGHVELPQDEAQ-------------IAAWLAVNGPV-AVAV 139
Query: 265 LYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKI 324
+ Y GV + L+ H L+G+ PYW++ N+W WG+ G ++I
Sbjct: 140 DASSWMTYTGGVMTSCVSEALD---HGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRI 196
Query: 325 LRGKYEC 331
+G +C
Sbjct: 197 AKGSNQC 203
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
+E I + +GP A + Y GV + +L+ H L+G+ P
Sbjct: 121 DEAQIAAWLAVNGPV-AVAVDASSWMTYTGGVMTSCVSEQLD---HGVLLVGYNDGAAVP 176
Query: 305 YWLVINTWGPHWGDRGTVKILRGKYEC 331
YW++ N+W WG+ G ++I +G +C
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
+E I + +GP A + Y GV + +L+ H L+G+ P
Sbjct: 121 DEAQIAAWLAVNGPV-AVAVDASSWMTYTGGVMTSCVSEQLD---HGVLLVGYNDGAAVP 176
Query: 305 YWLVINTWGPHWGDRGTVKILRGKYEC 331
YW++ N+W WG+ G ++I +G +C
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 234 HRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGK 293
R T+ +V +D K+ + GP + + A DDF Y+ G Y A H+
Sbjct: 123 ERYTIKSYVSIPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPN---HAVI 179
Query: 294 LIGWGTEN----------GTPYWLVINTWGPHWGDRGTVKI 324
L+G+G ++ Y+++ N+WG WG+ G + +
Sbjct: 180 LVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINL 220
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
D F HY N NY H+ ++G+ G YW+V N+W +WGD G
Sbjct: 228 DAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 280
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
D F HY N NY H+ ++G+ G YW+V N+W +WGD G
Sbjct: 148 DAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
D F HY N NY H+ ++G+ G YW+V N+W +WGD G
Sbjct: 148 DAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 267 DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
D F HY N NY H+ ++G+ G YW+V N+W +WGD G
Sbjct: 148 DAFRHYDGRTIIQRDNGYQPNY-HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG 200
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 233 KHRTTLTYWVDDNEDAIKKEILAHGPTTATF-ALYDDFYHYKSGVYKHTSNAKLENYLHS 291
K +T V N + +AH P + + DF +YK G+++ + K++ H+
Sbjct: 104 KVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVD---HA 160
Query: 292 GKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILR 326
+G+G G Y L+ N+WGP WG+ G ++I R
Sbjct: 161 VTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRR 195
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE A+ + I + A F +Y+ G++ ++ H+ +G+G +
Sbjct: 116 NNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSID---HAVAAVGYGND--- 169
Query: 304 PYWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 -YILIKNSWGTGWGEGGYIRIKRG 192
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 269 FYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRG 320
F HY N NY H+ ++G+G+ G YW+V N+W WGD G
Sbjct: 151 FQHYDGRTIIQHDNGYQPNY-HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSG 201
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 290 HSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAA 339
H+ L+G+G + P+W + N+WG WG++G + RG C + ++
Sbjct: 161 HAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 241 WVDDNEDAIKKEILAHGPTTA-TFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT 299
+V N++ + +A+ P + T + F YK G+Y+ N H+ +G+G
Sbjct: 112 YVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGT---NTDHAVTAVGYGK 168
Query: 300 ENGTPYWLVINTWGPHWGDRGTVKILR 326
Y L+ N+WGP+WG++G ++I R
Sbjct: 169 T----YLLLKNSWGPNWGEKGYIRIKR 191
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
NE A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
N+ A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
N+ A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTP 304
N+ A+ I + A DF Y+ G++ K++ H+ +G+G
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD---HAVAAVGYGPN---- 169
Query: 305 YWLVINTWGPHWGDRGTVKILRG 327
Y L+ N+WG WG+ G ++I RG
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 126/323 (39%), Gaps = 70/323 (21%)
Query: 13 LVRGELYKFSDAYIDQINREANTWTAGRNFPANLS-EEYLRQFL--IADAKYFDQSDRPL 69
L R E++K + YID+ N++ N++ G N A+LS +E+ +++ + DA
Sbjct: 40 LYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATI-------- 91
Query: 70 PGDRKTYDPEYS----ATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRR 125
++YD E+ +P+ D W G + V G+C + F+AV
Sbjct: 92 ---EQSYDEEFINEDIVNLPENVD----WRKKGAVTPVRHQGSCGSCWAFSAVATVEGIN 144
Query: 126 CIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTG 185
I++ + LS + + C + + C G ++ K G
Sbjct: 145 KIRTG--KLVELSEQELVDCER-----RSHGCKGGYPPYALEYVAKNG------------ 185
Query: 186 CQPSTISPCSHHGSAPTLPSCENQKV--PKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVD 243
I S + +C ++V P +K T G G Q
Sbjct: 186 -----IHLRSKYPYKAKQGTCRAKQVGGPIVK--------TSGVGRVQP----------- 221
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE + I + + F YK G+++ K++ + + +G+G G
Sbjct: 222 NNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTA---VGYGKSGGK 278
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
Y L+ N+WG WG++G ++I R
Sbjct: 279 GYILIKNSWGTAWGEKGYIRIKR 301
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 290 HSGKLIGWGTENGT--PYWLVINTWGPHWGDRGTVKILR 326
H+ ++G+G+ NGT YW+V N+WG WG G + I R
Sbjct: 162 HTVLIVGYGS-NGTNADYWIVKNSWGTEWGIDGYILIRR 199
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE + I + + F YK G+++ K+E H+ +G+G G
Sbjct: 116 NNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVE---HAVTAVGYGKSGGK 172
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
Y L+ N+WG WG++G ++I R
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKR 195
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 31.2 bits (69), Expect = 0.80, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 305 YWLVINTWGPHWGDRGTVKILRGK 328
YWLV N+WG WG G VK+ + +
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDR 27
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGT 303
+NE + I + + F YK G+++ K++ H+ +G+G G
Sbjct: 116 NNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVD---HAVTAVGYGKSGGK 172
Query: 304 PYWLVINTWGPHWGDRGTVKILR 326
Y L+ N+WG WG++G ++I R
Sbjct: 173 GYILIKNSWGTAWGEKGYIRIKR 195
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus
pdb|2WQK|B Chain B, Crystal Structure Of Sure Protein From Aquifex Aeolicus
Length = 251
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 272 YKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTW 312
YK V+K+ Y + + GW E GT YW V+N +
Sbjct: 185 YKERVFKYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGY 225
>pdb|1V9I|C Chain C, Crystal Structure Analysis Of The Site Specific Mutant
(Q253c) Of Bovine Carbonic Anhydrase Ii
Length = 261
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 212 PKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYH 271
P LK R + H + Y DD++D K +L GP T T+ L +H
Sbjct: 43 PALKPLALVYGEATSRRMVNNGHSFNVEY--DDSQD---KAVLKDGPLTGTYRLVQFHFH 97
Query: 272 YKSGV---YKHTSNAKLENYLHSGKLIGWGTENG 302
+ S +HT + K Y L+ W T+ G
Sbjct: 98 WGSSDDQGSEHTVDRK--KYAAELHLVHWNTKYG 129
>pdb|1V9E|A Chain A, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
pdb|1V9E|B Chain B, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
Length = 259
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 212 PKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYH 271
P LK R + H + Y DD++D K +L GP T T+ L +H
Sbjct: 41 PALKPLALVYGEATSRRMVNNGHSFNVEY--DDSQD---KAVLKDGPLTGTYRLVQFHFH 95
Query: 272 YKSGV---YKHTSNAKLENYLHSGKLIGWGTENG 302
+ S +HT + K Y L+ W T+ G
Sbjct: 96 WGSSDDQGSEHTVDRK--KYAAELHLVHWNTKYG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,126,464
Number of Sequences: 62578
Number of extensions: 561820
Number of successful extensions: 1174
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 153
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)