Query psy15353
Match_columns 344
No_of_seqs 187 out of 1612
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:44:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 5.2E-69 1.1E-73 488.6 19.5 272 16-341 92-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 7.6E-65 1.6E-69 481.5 27.7 273 17-341 60-339 (348)
3 KOG1543|consensus 100.0 6.3E-64 1.4E-68 472.0 25.5 269 23-344 54-325 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 1.9E-61 4E-66 471.3 26.0 276 15-342 189-488 (489)
5 cd02620 Peptidase_C1A_Cathepsi 100.0 1.1E-60 2.4E-65 433.7 24.7 236 85-340 1-236 (236)
6 PTZ00200 cysteine proteinase; 100.0 1E-60 2.2E-65 464.6 25.4 274 15-342 146-445 (448)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1.3E-59 2.8E-64 428.8 23.7 223 84-342 1-242 (243)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 3.7E-58 8E-63 417.9 24.9 226 84-342 1-238 (239)
9 PTZ00049 cathepsin C-like prot 100.0 2.5E-56 5.4E-61 444.1 25.3 240 81-343 378-677 (693)
10 cd02248 Peptidase_C1A Peptidas 100.0 3E-55 6.5E-60 391.2 23.4 208 85-339 1-209 (210)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.4E-54 3.1E-59 427.5 23.9 230 81-342 202-459 (548)
12 KOG1544|consensus 100.0 1E-56 2.2E-61 403.0 7.7 297 19-342 146-460 (470)
13 PF00112 Peptidase_C1: Papain 100.0 6.2E-54 1.3E-58 384.1 19.9 214 84-341 1-219 (219)
14 smart00645 Pept_C1 Papain fami 100.0 2.6E-49 5.6E-54 343.0 18.1 169 84-339 1-172 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 3.2E-45 6.9E-50 328.4 21.7 208 87-333 1-217 (223)
16 PTZ00462 Serine-repeat antigen 100.0 5.3E-44 1.1E-48 365.1 22.5 224 94-343 538-782 (1004)
17 COG4870 Cysteine protease [Pos 99.9 2.5E-28 5.3E-33 225.3 7.2 200 81-327 96-313 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 3.5E-22 7.6E-27 193.8 16.1 214 101-327 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.6 1E-14 2.2E-19 142.0 14.8 216 101-326 56-399 (438)
20 COG3579 PepC Aminopeptidase C 98.6 3.5E-07 7.6E-12 84.4 10.7 73 252-326 307-401 (444)
21 PF08127 Propeptide_C1: Peptid 98.2 1.9E-06 4.1E-11 55.7 3.7 40 21-61 1-40 (41)
22 PF08246 Inhibitor_I29: Cathep 97.0 0.00038 8.2E-09 48.7 2.0 34 17-50 23-58 (58)
23 PF05543 Peptidase_C47: Stapho 96.8 0.027 5.9E-07 48.0 12.0 55 245-313 90-145 (175)
24 KOG4128|consensus 96.5 0.004 8.8E-08 57.9 4.9 80 244-325 304-412 (457)
25 PF13529 Peptidase_C39_2: Pept 95.8 0.043 9.3E-07 44.6 7.5 58 243-312 86-144 (144)
26 smart00848 Inhibitor_I29 Cathe 95.5 0.0057 1.2E-07 42.3 0.9 33 17-49 23-57 (57)
27 PF09778 Guanylate_cyc_2: Guan 89.6 1.4 3E-05 39.1 7.1 61 244-310 111-180 (212)
28 PF14399 Transpep_BrtH: NlpC/p 88.9 1 2.3E-05 42.2 6.4 57 245-310 77-133 (317)
29 COG4990 Uncharacterized protei 86.5 1.7 3.6E-05 37.4 5.4 48 244-313 121-168 (195)
30 cd02549 Peptidase_C39A A sub-f 77.6 7.7 0.00017 31.3 6.2 45 249-312 70-114 (141)
31 cd00044 CysPc Calpains, domain 69.8 14 0.00029 35.0 6.6 26 289-314 236-263 (315)
32 PF15240 Pro-rich: Proline-ric 57.8 3.3 7.2E-05 35.6 -0.0 21 3-23 1-21 (179)
33 PF01640 Peptidase_C10: Peptid 55.9 52 0.0011 28.6 7.2 51 246-323 140-192 (192)
34 PF12385 Peptidase_C70: Papain 35.7 1E+02 0.0022 26.2 5.4 39 245-300 97-135 (166)
35 smart00230 CysPc Calpain-like 31.6 1.3E+02 0.0029 28.3 6.4 26 289-314 228-255 (318)
No 1
>KOG1542|consensus
Probab=100.00 E-value=5.2e-69 Score=488.60 Aligned_cols=272 Identities=22% Similarity=0.419 Sum_probs=226.5
Q ss_pred cccccCcHHHHHHHHhCCC-cEEEeec-CCCCCcHHHHHHHccccccCCCCCCCCCCCCCCccCCCCCCCCCCceecCcc
Q psy15353 16 GELYKFSDAYIDQINREAN-TWTAGRN-FPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQ 93 (344)
Q Consensus 16 ~~~~~~~~~~I~~~N~~~~-~~~~~~n-f~~~~~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~ 93 (344)
..++..|...++++++... +.+.|+| |+|+|.+||.+.+++.+.... +.+.. ...........||++||||++
T Consensus 92 l~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~---~~~~~--~~~~~~~~~~~lP~~fDWR~k 166 (372)
T KOG1542|consen 92 LSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGS---KLPGD--AAEAPIEPGESLPESFDWRDK 166 (372)
T ss_pred HHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccc---cCccc--cccCcCCCCCCCCcccchhcc
Confidence 3467778888888888876 8999999 998888888888887766311 22211 122223566789999999999
Q ss_pred CCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHHHHHHHc-
Q psy15353 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKR- 172 (344)
Q Consensus 94 ~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~~~~~~~- 172 (344)
|.||||||||+||||||||+++++|.+++|++++ .+.||||+|+||.. + ++||+||.+..||+|+++.
T Consensus 167 ----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~--LvsLSEQeLvDCD~-~----d~gC~GGl~~nA~~~~~~~g 235 (372)
T KOG1542|consen 167 ----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGK--LVSLSEQELVDCDS-C----DNGCNGGLMDNAFKYIKKAG 235 (372)
T ss_pred ----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCc--ccccchhhhhcccC-c----CCcCCCCChhHHHHHHHHhC
Confidence 9999999999999999999999999999999985 59999999999984 3 4899999999999996555
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC-CCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCCcHHHHHH
Q psy15353 173 GSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP-SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKK 251 (344)
Q Consensus 173 Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~-~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 251 (344)
|+..|.+| ||+ +..+ .|... .. ....++..+..++.++++|.+
T Consensus 236 GL~~E~dY-------PY~----------g~~~~~C~~~--------------~~-----~~~v~I~~f~~l~~nE~~ia~ 279 (372)
T KOG1542|consen 236 GLEKEKDY-------PYT----------GKKGNQCHFD--------------KS-----KIVVSIKDFSMLSNNEDQIAA 279 (372)
T ss_pred CccccccC-------Ccc----------ccCCCccccc--------------hh-----hceEEEeccEecCCCHHHHHH
Confidence 89999999 999 6555 56554 11 113345666778889999999
Q ss_pred HHHhCCCEEEEEEecCCcccCCCceEec--CCCCCCCCCCeEEEEEEeccCC-CeeeEEEEcCCCCCCCCCCeEEEEccC
Q psy15353 252 EILAHGPTTATFALYDDFYHYKSGVYKH--TSNAKLENYLHSGKLIGWGTEN-GTPYWLVINTWGPHWGDRGTVKILRGK 328 (344)
Q Consensus 252 ~l~~~gPV~v~~~v~~~f~~y~~Giy~~--~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~Gy~~i~~g~ 328 (344)
.|.++|||+|+|++ ..+|.|++||..+ ..|+.... +|+|+|||||... .++|||||||||++|||+||||+.||.
T Consensus 280 wLv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~-~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~ 357 (372)
T KOG1542|consen 280 WLVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLL-NHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS 357 (372)
T ss_pred HHHhcCCeEEEEch-HHHHHhcccccCCCcccCCcccc-CceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc
Confidence 99999999999996 5799999999987 34566655 8999999999988 899999999999999999999999999
Q ss_pred Ccccccccceeee
Q psy15353 329 YECAFEYLIAAGK 341 (344)
Q Consensus 329 ~~cgi~~~~~~~~ 341 (344)
|.|||++++.++.
T Consensus 358 N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 358 NACGIADMVSSAA 370 (372)
T ss_pred cccccccchhhhh
Confidence 9999999998764
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=7.6e-65 Score=481.50 Aligned_cols=273 Identities=20% Similarity=0.378 Sum_probs=211.1
Q ss_pred ccccCcHHHHHHHHhCCCcEEEeec-CCCCCcHHHHHHHccccccCCCCCCCCCCCCCCccCCCCCCCCCCceecCccCC
Q psy15353 17 ELYKFSDAYIDQINREANTWTAGRN-FPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQWP 95 (344)
Q Consensus 17 ~~~~~~~~~I~~~N~~~~~~~~~~n-f~~~~~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~~~ 95 (344)
.++..|.++|++||+++.+|++++| |+|++.|||.+++++...... ..+..... ..........+||++||||++
T Consensus 60 ~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~lP~~~DWR~~-- 135 (348)
T PTZ00203 60 ANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFA-AAKQHAGQ-HYRKARADLSAVPDAVDWREK-- 135 (348)
T ss_pred HHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCcccc-cccccccc-cccccccccccCCCCCcCCcC--
Confidence 3677789999999988779999999 998887877777765321110 00000000 000101122368999999998
Q ss_pred CCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHHHHHHHc---
Q psy15353 96 NCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKR--- 172 (344)
Q Consensus 96 ~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~~~~~~~--- 172 (344)
|.++||||||.||||||||++++||++++|++++ .+.||+|+|+||+.. +.||+||.+..||+|++++
T Consensus 136 --g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~--~~~LSeQqLvdC~~~-----~~GC~GG~~~~a~~yi~~~~~g 206 (348)
T PTZ00203 136 --GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHK--LVRLSEQQLVSCDHV-----DNGCGGGLMLQAFEWVLRNMNG 206 (348)
T ss_pred --CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCC--CccCCHHHHHhccCC-----CCCCCCCCHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999875 489999999999852 4799999999999999864
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC---CCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCCcHHHH
Q psy15353 173 GSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP---SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAI 249 (344)
Q Consensus 173 Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~---~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (344)
|+++|++| ||. +..+ .|... + . ... ......+..++.++++|
T Consensus 207 gi~~e~~Y-------PY~----------~~~~~~~~C~~~----------~-~--~~~-----~~~i~~~~~i~~~e~~~ 251 (348)
T PTZ00203 207 TVFTEKSY-------PYV----------SGNGDVPECSNS----------S-E--LAP-----GARIDGYVSMESSERVM 251 (348)
T ss_pred CCCccccC-------CCc----------cCCCCCCcCCCC----------c-c--ccc-----ceEecceeecCcCHHHH
Confidence 58899999 999 3332 34321 0 0 000 01122333455578899
Q ss_pred HHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCCCCCeEEEEccCC
Q psy15353 250 KKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKY 329 (344)
Q Consensus 250 k~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~~ 329 (344)
+.+|+++|||+++|++. +|++|++|||.. |..... +|||+|||||.++|++|||||||||++|||+|||||+||.|
T Consensus 252 ~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~--c~~~~~-nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n 327 (348)
T PTZ00203 252 AAWLAKNGPISIAVDAS-SFMSYHSGVLTS--CIGEQL-NHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVN 327 (348)
T ss_pred HHHHHhCCCEEEEEEhh-hhcCccCceeec--cCCCCC-CeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCC
Confidence 99999999999999984 899999999975 343333 69999999999999999999999999999999999999999
Q ss_pred cccccccceeee
Q psy15353 330 ECAFEYLIAAGK 341 (344)
Q Consensus 330 ~cgi~~~~~~~~ 341 (344)
+|||+++++.+.
T Consensus 328 ~Cgi~~~~~~~~ 339 (348)
T PTZ00203 328 ACLLTGYPVSVH 339 (348)
T ss_pred cccccceEEEEe
Confidence 999999988763
No 3
>KOG1543|consensus
Probab=100.00 E-value=6.3e-64 Score=472.00 Aligned_cols=269 Identities=29% Similarity=0.533 Sum_probs=224.2
Q ss_pred HHHHHHHHhC-CCcEEEeec-CCCCCcHHHHHHHccccccCCCCCCCCCCCCCCccCCCCCCCCCCceecCccCCCCCCC
Q psy15353 23 DAYIDQINRE-ANTWTAGRN-FPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQWPNCGTI 100 (344)
Q Consensus 23 ~~~I~~~N~~-~~~~~~~~n-f~~~~~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~~~~~~~i 100 (344)
.++|+.||.. ..+|++++| |+|.+.+|+.+.+.+...+.. . . ..........++|++||||++| +.+
T Consensus 54 ~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~---~---~--~~~~~~~~~~~~p~s~DwR~~~---~~~ 122 (325)
T KOG1543|consen 54 LQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI---K---R--DKFTEKLDGDDLPDSFDWRDKG---AVT 122 (325)
T ss_pred HHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc---c---c--cccccccchhhCCCCccccccC---CcC
Confidence 3457788887 569999999 998888888888877665432 0 0 1111123356899999999996 457
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHHHHHHHcCCCC-CCC
Q psy15353 101 GHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVT-GGD 179 (344)
Q Consensus 101 ~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~~~~~~~Gi~~-e~~ 179 (344)
+|||||+.||||||||++++||++++|++++ ..+.||+|+|+||+..+ ++||+||.+..||+|++++|+++ +++
T Consensus 123 ~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~-~l~sLSeq~lvdC~~~~----~~GC~GG~~~~A~~yi~~~G~~t~~~~ 197 (325)
T KOG1543|consen 123 PPVKDQGSCGSCWAFAATGALEDRYNIKTGG-KLLSLSEQDLVDCCGEC----GDGCNGGEPKNAFKYIKKNGGVTECEN 197 (325)
T ss_pred CCcCCCCcCcchHHHHHHHHHHHHHHHHhCC-ccCccChhhhhhccCCC----CCCcCCCCHHHHHHHHHHhCCCCCCcC
Confidence 7799999999999999999999999999986 46999999999998763 48999999999999999999888 999
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCCcHHHHHHHHHhCCCE
Q psy15353 180 YGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPT 259 (344)
Q Consensus 180 y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV 259 (344)
| ||. +....|... .. ...+.....+.++.++++|+.+|+++|||
T Consensus 198 Y-------py~----------~~~~~C~~~------------~~-------~~~~~~~~~~~~~~~e~~i~~~v~~~GPv 241 (325)
T KOG1543|consen 198 Y-------PYI----------GKDGTCKSN------------KK-------DKTVTIKGFYNVPANEEAIAEAVAKNGPV 241 (325)
T ss_pred C-------CCc----------CCCCCccCC------------Cc-------cceeEeeeeeecCcCHHHHHHHHHhcCCe
Confidence 9 999 555566654 11 22344566677787899999999999999
Q ss_pred EEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCCCCCeEEEEccCCccccccccee
Q psy15353 260 TATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAA 339 (344)
Q Consensus 260 ~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~ 339 (344)
.++|+++++|++|++|||.+++|..... +|||+|||||+.++.+|||||||||++|||+|||||.||.+.|+|++.+.+
T Consensus 242 ~v~~~a~~~F~~Y~~GVy~~~~~~~~~~-~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~ 320 (325)
T KOG1543|consen 242 SVAIDAYEDFSLYKGGVYAEEKGDDKEG-DHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASY 320 (325)
T ss_pred EEEEeehhhhhhccCceEeCCCCCCCCC-CceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhccccc
Confidence 9999999999999999999998544323 699999999996678999999999999999999999999999999999999
Q ss_pred eecCC
Q psy15353 340 GKPKN 344 (344)
Q Consensus 340 ~~p~~ 344 (344)
+.|++
T Consensus 321 ~p~~~ 325 (325)
T KOG1543|consen 321 GPIKL 325 (325)
T ss_pred CCCCC
Confidence 77763
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.9e-61 Score=471.27 Aligned_cols=276 Identities=24% Similarity=0.400 Sum_probs=211.3
Q ss_pred ccccccCcHHHHHHHHhCC-CcEEEeec-CCCCCcHHHHHHHccccccCCCC-CC----CCCCCCC-CccCCCCCCCCCC
Q psy15353 15 RGELYKFSDAYIDQINREA-NTWTAGRN-FPANLSEEYLRQFLIADAKYFDQ-SD----RPLPGDR-KTYDPEYSATVPD 86 (344)
Q Consensus 15 ~~~~~~~~~~~I~~~N~~~-~~~~~~~n-f~~~~~~e~~~~~~g~~~~~~~~-~~----~~~~~~~-~~~~~~~~~~lP~ 86 (344)
|..++..|.++|++||++. .+|++++| |+|++.+||.+.+++........ .. ....... ....+.....+|+
T Consensus 189 R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 268 (489)
T PTZ00021 189 RYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHA 268 (489)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccccccccccccccccccccccccccCCcc
Confidence 3347778999999999865 59999999 99888888877777643210000 00 0000000 0011111112499
Q ss_pred ceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHH
Q psy15353 87 RFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTW 166 (344)
Q Consensus 87 ~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~ 166 (344)
+||||+. |.++||||||.||||||||++++||++++|+++. .+.||+|+|+||+.. +.||+||.+..||
T Consensus 269 s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~--~v~LSeQqLVDCs~~-----n~GC~GG~~~~Af 337 (489)
T PTZ00021 269 KYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNE--LVSLSEQELVDCSFK-----NNGCYGGLIPNAF 337 (489)
T ss_pred ccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCC--CcccCHHHHhhhccC-----CCCCCCcchHhhh
Confidence 9999998 9999999999999999999999999999999875 489999999999853 5799999999999
Q ss_pred HHHHHc-CCCCCCCCCCCCCCcCCCCCCCCCCCCCCC-CCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCC
Q psy15353 167 NFLHKR-GSVTGGDYGDRTGCQPSTISPCSHHGSAPT-LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDD 244 (344)
Q Consensus 167 ~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~-~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
+|+.+. |+++|++| ||. +. .+.|... .| ...+. ...+..++
T Consensus 338 ~yi~~~gGl~tE~~Y-------PY~----------~~~~~~C~~~---------~~-~~~~~---------i~~y~~i~- 380 (489)
T PTZ00021 338 EDMIELGGLCSEDDY-------PYV----------SDTPELCNID---------RC-KEKYK---------IKSYVSIP- 380 (489)
T ss_pred hhhhhccccCccccc-------Ccc----------CCCCCccccc---------cc-cccce---------eeeEEEec-
Confidence 999776 89999999 999 43 2456432 11 11111 12333453
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCC----------eeeEEEEcCCCC
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENG----------TPYWLVINTWGP 314 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g----------~~ywivkNSWG~ 314 (344)
+++|+++|+..|||+|+|+++++|++|++|||..+| +..+ +|||+|||||++++ .+|||||||||+
T Consensus 381 -~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C-~~~~--nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt 456 (489)
T PTZ00021 381 -EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGEC-GEEP--NHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGE 456 (489)
T ss_pred -HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCCC-CCcc--ceEEEEEEecCcCCcccccccCCCCCEEEEECCCCC
Confidence 578999999999999999998899999999998754 6654 69999999997642 479999999999
Q ss_pred CCCCCCeEEEEccC----Ccccccccceeeec
Q psy15353 315 HWGDRGTVKILRGK----YECAFEYLIAAGKP 342 (344)
Q Consensus 315 ~WG~~Gy~~i~~g~----~~cgi~~~~~~~~p 342 (344)
+|||+|||||+|+. |.|||.+++.+++.
T Consensus 457 ~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 457 SWGEKGFIRIETDENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence 99999999999986 58999999988764
No 5
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.1e-60 Score=433.71 Aligned_cols=236 Identities=46% Similarity=0.905 Sum_probs=190.1
Q ss_pred CCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhH
Q psy15353 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFR 164 (344)
Q Consensus 85 P~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~ 164 (344)
|++||||++|+++..++||+|||.||+|||||++++||++++|++++...+.||+|+|+||+.. ++.||+||++..
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~----~~~gC~GG~~~~ 76 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG----CGDGCNGGYPDA 76 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC----CCCCCCCCCHHH
Confidence 8999999998877667899999999999999999999999999887434589999999999854 247999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCC
Q psy15353 165 TWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDD 244 (344)
Q Consensus 165 a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
||+|++++|+++|++| ||....|..+.. . ...|.. ...|...| .......+.....+....+.+..
T Consensus 77 a~~~i~~~G~~~e~~y-------PY~~~~~~~~~~-~-~~~~~~----~~~~~~~C-~~~~~~~~~~~~~~~~~~~~~~~ 142 (236)
T cd02620 77 AWKYLTTTGVVTGGCQ-------PYTIPPCGHHPE-G-PPPCCG----TPYCTPKC-QDGCEKTYEEDKHKGKSAYSVPS 142 (236)
T ss_pred HHHHHHhcCCCcCCEe-------cCcCCCCccCCC-C-CCCCCC----CCCCCCCC-CcCCccccceeeeeecceeeeCC
Confidence 9999999999999888 999544322111 0 012221 12333344 22222123333444455566666
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCCCCCeEEE
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKI 324 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i 324 (344)
++++||.+|+++|||+++|.++++|+.|++|||+.++ +...+ +|||+|||||+++|++|||||||||++|||+|||||
T Consensus 143 ~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~~-~~~~~-~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri 220 (236)
T cd02620 143 DETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTS-GKQLG-GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRI 220 (236)
T ss_pred HHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEeecC-CCCcC-CeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEE
Confidence 7899999999999999999998899999999998765 66666 799999999999999999999999999999999999
Q ss_pred EccCCcccccccceee
Q psy15353 325 LRGKYECAFEYLIAAG 340 (344)
Q Consensus 325 ~~g~~~cgi~~~~~~~ 340 (344)
+||.|.|||+++++++
T Consensus 221 ~~~~~~cgi~~~~~~~ 236 (236)
T cd02620 221 LRGSNECGIESEVVAG 236 (236)
T ss_pred EccCcccccccceecC
Confidence 9999999999998864
No 6
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1e-60 Score=464.58 Aligned_cols=274 Identities=22% Similarity=0.358 Sum_probs=206.5
Q ss_pred ccccccCcHHHHHHHHhCCCcEEEeec-CCCCCcHHHHHHHccccccCCCCCCCCC---CCC---CCccCC---------
Q psy15353 15 RGELYKFSDAYIDQINREANTWTAGRN-FPANLSEEYLRQFLIADAKYFDQSDRPL---PGD---RKTYDP--------- 78 (344)
Q Consensus 15 ~~~~~~~~~~~I~~~N~~~~~~~~~~n-f~~~~~~e~~~~~~g~~~~~~~~~~~~~---~~~---~~~~~~--------- 78 (344)
|..++..|.++|++||.. .+|++++| |+|++.+||.+.+++...+.......+. ..+ ...+..
T Consensus 146 R~~iF~~Nl~~I~~hN~~-~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (448)
T PTZ00200 146 RFLTFRNNYLEVKSHKGD-EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTD 224 (448)
T ss_pred HHHHHHHHHHHHHHhcCc-CCeEEeccccccCCHHHHHHHhccCCCcccccccccccccccccccccccccccccccccc
Confidence 334777899999999964 58999999 9987777777766654322100000000 000 000000
Q ss_pred ----CCCCCCCCceecCccCCCCCCCccCCCCC-CCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCC
Q psy15353 79 ----EYSATVPDRFDAREQWPNCGTIGHVPDTG-ACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDD 153 (344)
Q Consensus 79 ----~~~~~lP~~~D~R~~~~~~~~i~pv~dQg-~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~ 153 (344)
.....+|++||||+. |.++|||||| .||||||||+++++|++++|+++. .+.||+|+|+||+..
T Consensus 225 ~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~--~~~LSeQqLvDC~~~----- 293 (448)
T PTZ00200 225 EDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDK--SVDLSEQELVNCDTK----- 293 (448)
T ss_pred cccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCC--CeecCHHHHhhccCc-----
Confidence 001236999999998 9999999999 999999999999999999998764 489999999999852
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeece
Q psy15353 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDK 233 (344)
Q Consensus 154 ~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~ 233 (344)
+.||+||++..||+|++++|+++|++| ||. +..+.|... . ...
T Consensus 294 ~~GC~GG~~~~A~~yi~~~Gi~~e~~Y-------PY~----------~~~~~C~~~------------~--~~~------ 336 (448)
T PTZ00200 294 SQGCSGGYPDTALEYVKNKGLSSSSDV-------PYL----------AKDGKCVVS------------S--TKK------ 336 (448)
T ss_pred cCCCCCCcHHHHHHHHhhcCccccccC-------CCC----------CCCCCCcCC------------C--CCe------
Confidence 579999999999999999999999999 999 656667543 0 000
Q ss_pred eeeeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEecc--CCCeeeEEEEcC
Q psy15353 234 HRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT--ENGTPYWLVINT 311 (344)
Q Consensus 234 ~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNS 311 (344)
.+.. .|.+..+.+.+++ ++..|||+++|+++++|+.|++|||+++| +..+ +|||+|||||. ++|.+|||||||
T Consensus 337 ~~i~-~y~~~~~~~~l~~-~l~~GPV~v~i~~~~~f~~Yk~GIy~~~C-~~~~--nHaV~lVGyG~d~~~g~~YWIIkNS 411 (448)
T PTZ00200 337 VYID-SYLVAKGKDVLNK-SLVISPTVVYIAVSRELLKYKSGVYNGEC-GKSL--NHAVLLVGEGYDEKTKKRYWIIKNS 411 (448)
T ss_pred eEec-ceEecCHHHHHHH-HHhcCCEEEEeecccccccCCCCcccccc-CCCC--cEEEEEEEecccCCCCCceEEEEcC
Confidence 1111 1222233444444 55689999999998899999999998765 6654 69999999995 468899999999
Q ss_pred CCCCCCCCCeEEEEcc---CCcccccccceeeec
Q psy15353 312 WGPHWGDRGTVKILRG---KYECAFEYLIAAGKP 342 (344)
Q Consensus 312 WG~~WG~~Gy~~i~~g---~~~cgi~~~~~~~~p 342 (344)
||++|||+|||||+|+ .|.|||++.+.+++.
T Consensus 412 WG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 412 WGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred CCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 9999999999999995 589999999887653
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.3e-59 Score=428.81 Aligned_cols=223 Identities=34% Similarity=0.609 Sum_probs=183.1
Q ss_pred CCCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCC----CCCCCCCHHHHHhhcCcCCCCCCCCCCC
Q psy15353 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKG----QQNRPLSTEYVASCCKICRYDDNKSCSH 159 (344)
Q Consensus 84 lP~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~----~~~~~lS~q~l~dc~~~~~~~~~~gC~G 159 (344)
||++||||+.++++..|+||||||.||+|||||++++||++++|++++ ...+.||+|+|+||+.. +.||+|
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~-----~~GC~G 75 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-----SQGCDG 75 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC-----CCCCCC
Confidence 799999999977777999999999999999999999999999998875 23589999999999742 479999
Q ss_pred CchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCC-CCCCCCCCCCCCccccccccCCCCcceeeeceeeeee
Q psy15353 160 GSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAP-TLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTL 238 (344)
Q Consensus 160 G~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~-~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~ 238 (344)
|++..|++|++++|+++|++| ||. + ..+.|.... ..| .. + +.........
T Consensus 76 G~~~~a~~~~~~~Gi~~e~~y-------PY~----------~~~~~~C~~~~-------~~~-~~-~---~~~~~~~i~~ 126 (243)
T cd02621 76 GFPFLVGKFAEDFGIVTEDYF-------PYT----------ADDDRPCKASP-------SEC-RR-Y---YFSDYNYVGG 126 (243)
T ss_pred CCHHHHHHHHHhcCcCCCcee-------CCC----------CCCCCCCCCCc-------ccc-cc-c---cccceeEccc
Confidence 999999999999999998888 999 4 455665430 001 00 0 0111111111
Q ss_pred eEEeCCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCC----CCC--------CCCCCeEEEEEEeccCC--Cee
Q psy15353 239 TYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTS----NAK--------LENYLHSGKLIGWGTEN--GTP 304 (344)
Q Consensus 239 ~~~~~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~----~~~--------~~~~~Hav~iVGyg~~~--g~~ 304 (344)
+....++++||++|+++|||+++|+++++|++|++|||+.+. |.. ..+ +|||+|||||+++ |.+
T Consensus 127 -~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~-~HaV~iVGyg~~~~~g~~ 204 (243)
T cd02621 127 -CYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELT-NHAVLLVGWGEDEIKGEK 204 (243)
T ss_pred -ccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccC-CeEEEEEEeeccCCCCCc
Confidence 112347899999999999999999999899999999998763 332 134 7999999999876 899
Q ss_pred eEEEEcCCCCCCCCCCeEEEEccCCcccccccceeeec
Q psy15353 305 YWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAGKP 342 (344)
Q Consensus 305 ywivkNSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~~p 342 (344)
|||||||||++|||+|||||+||.|+|||+++++++.|
T Consensus 205 YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~~ 242 (243)
T cd02621 205 YWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAYP 242 (243)
T ss_pred EEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeecc
Confidence 99999999999999999999999999999999999988
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=3.7e-58 Score=417.94 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=182.0
Q ss_pred CCCceecCccCCCCCCCccCCCCC---CCCchHHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHhhcCcCCCCCCCCCCC
Q psy15353 84 VPDRFDAREQWPNCGTIGHVPDTG---ACAAPHIFAAVGAFSDRRCIKSKGQ-QNRPLSTEYVASCCKICRYDDNKSCSH 159 (344)
Q Consensus 84 lP~~~D~R~~~~~~~~i~pv~dQg---~cgsCwAfA~~~~le~~~~i~~~~~-~~~~lS~q~l~dc~~~~~~~~~~gC~G 159 (344)
||++||||+.+.. ..++|||||| .||||||||++++||++++|+.++. ..+.||+|+|+||+. +.||+|
T Consensus 1 lP~~~Dwr~~~~~-~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~------~~gC~G 73 (239)
T cd02698 1 LPKSWDWRNVNGV-NYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG------GGSCHG 73 (239)
T ss_pred CCCCcccccCCCC-cccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC------CCCccC
Confidence 6999999998211 2899999998 9999999999999999999988653 257899999999985 379999
Q ss_pred CchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccc--cccCCCCcceeeeceeeee
Q psy15353 160 GSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHT--RCTNPTYGRGFFQDKHRTT 237 (344)
Q Consensus 160 G~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~--~c~~~~~~~~~~~~~~~~~ 237 (344)
|++..||+|++++|+++|++| ||. +....|... .....|.. +| ..... ....+..
T Consensus 74 G~~~~a~~~~~~~Gl~~e~~y-------PY~----------~~~~~C~~~-~~~~~c~~~~~c-~~~~~----~~~~~i~ 130 (239)
T cd02698 74 GDPGGVYEYAHKHGIPDETCN-------PYQ----------AKDGECNPF-NRCGTCNPFGEC-FAIKN----YTLYFVS 130 (239)
T ss_pred cCHHHHHHHHHHcCcCCCCee-------CCc----------CCCCCCcCC-CCCCCcccCccc-ccccc----cceEEee
Confidence 999999999999999998888 999 545556532 01111221 22 10000 0112223
Q ss_pred eeEEeCCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCC-CeeeEEEEcCCCCCC
Q psy15353 238 LTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTEN-GTPYWLVINTWGPHW 316 (344)
Q Consensus 238 ~~~~~~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~W 316 (344)
.+..++ ++++||++|+++|||+++|+++++|+.|++|||+.++| ...+ +|||+|||||+++ |++|||||||||++|
T Consensus 131 ~~~~~~-~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~-~~~~-~HaV~IVGyG~~~~g~~YWiikNSWG~~W 207 (239)
T cd02698 131 DYGSVS-GRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQ-DPLI-NHIISVAGWGVDENGVEYWIVRNSWGEPW 207 (239)
T ss_pred eceecC-CHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCC-CCcC-CeEEEEEEEEecCCCCEEEEEEcCCCccc
Confidence 333443 57899999999999999999988999999999988774 3445 7999999999876 999999999999999
Q ss_pred CCCCeEEEEccC-----Ccccccccceeeec
Q psy15353 317 GDRGTVKILRGK-----YECAFEYLIAAGKP 342 (344)
Q Consensus 317 G~~Gy~~i~~g~-----~~cgi~~~~~~~~p 342 (344)
||+|||||+||. |+||||+.++++.|
T Consensus 208 Ge~Gy~~i~rg~~~~~~~~~~i~~~~~~~~~ 238 (239)
T cd02698 208 GERGWFRIVTSSYKGARYNLAIEEDCAWADP 238 (239)
T ss_pred CcCceEEEEccCCcccccccccccceEEEee
Confidence 999999999999 99999999999998
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=2.5e-56 Score=444.12 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=186.6
Q ss_pred CCCCCCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCC--------CCCCCCHHHHHhhcCcCCCC
Q psy15353 81 SATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQ--------QNRPLSTEYVASCCKICRYD 152 (344)
Q Consensus 81 ~~~lP~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~--------~~~~lS~q~l~dc~~~~~~~ 152 (344)
..+||++||||+.|+.++.++||+|||.||||||||++++||++++|+.++. ....||+|+|+||+..
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~---- 453 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY---- 453 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC----
Confidence 4589999999999999999999999999999999999999999999987531 1237999999999852
Q ss_pred CCCCCCCCchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
Q psy15353 153 DNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPK------------------- 213 (344)
Q Consensus 153 ~~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~------------------- 213 (344)
++||+||++..|++|+++.||++|..| ||. +..+.|.......
T Consensus 454 -nqGC~GG~~~~A~kya~~~GI~tEscY-------PY~----------a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~ 515 (693)
T PTZ00049 454 -DQGCNGGFPYLVSKMAKLQGIPLDKVF-------PYT----------ATEQTCPYQVDQSANSMNGSANLRQINAVFFS 515 (693)
T ss_pred -CCCcCCCcHHHHHHHHHHCCCCcCCcc-------CCc----------CCCCCCCCCCCCcccccccccccccccccccc
Confidence 579999999999999999999998888 998 5555665431110
Q ss_pred ccccccccCCC--CcceeeeceeeeeeeEEe--------CCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecC---
Q psy15353 214 LKCHTRCTNPT--YGRGFFQDKHRTTLTYWV--------DDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHT--- 280 (344)
Q Consensus 214 ~~c~~~c~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~--- 280 (344)
+.|...| ... ....+...+++...+..+ ..++++||++|+++|||+++|+++++|++|++|||+.+
T Consensus 516 ~~~~~~~-~~~~~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~ 594 (693)
T PTZ00049 516 SETQSDM-HADFEAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFP 594 (693)
T ss_pred ccccccc-cccccccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccc
Confidence 1111111 000 001111223333332222 14688999999999999999999889999999999864
Q ss_pred ---CCCCC-------------CCCCeEEEEEEeccC--CCe--eeEEEEcCCCCCCCCCCeEEEEccCCcccccccceee
Q psy15353 281 ---SNAKL-------------ENYLHSGKLIGWGTE--NGT--PYWLVINTWGPHWGDRGTVKILRGKYECAFEYLIAAG 340 (344)
Q Consensus 281 ---~~~~~-------------~~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WG~~Gy~~i~~g~~~cgi~~~~~~~ 340 (344)
.|... ..++|||+|||||.+ +|. +|||||||||++||++|||||+||.|.||||+++++.
T Consensus 595 h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~ 674 (693)
T PTZ00049 595 HARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFI 674 (693)
T ss_pred cccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEE
Confidence 14321 013799999999975 464 7999999999999999999999999999999999999
Q ss_pred ecC
Q psy15353 341 KPK 343 (344)
Q Consensus 341 ~p~ 343 (344)
.|.
T Consensus 675 ~pd 677 (693)
T PTZ00049 675 EPD 677 (693)
T ss_pred eee
Confidence 996
No 10
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=3e-55 Score=391.18 Aligned_cols=208 Identities=29% Similarity=0.573 Sum_probs=177.0
Q ss_pred CCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhH
Q psy15353 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFR 164 (344)
Q Consensus 85 P~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~ 164 (344)
|++||||+. +.++||+|||.||+|||||++++||++++++++. ...||+|+|++|... .+.+|.||+...
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~--~~~lS~q~l~~c~~~----~~~gC~GG~~~~ 70 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGK--LVSLSEQQLVDCSTS----GNNGCNGGNPDN 70 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCC--CcccCHHHHhccCCC----CCCCCCCCCHHH
Confidence 889999998 7799999999999999999999999999998874 488999999999864 247999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeCC
Q psy15353 165 TWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDD 244 (344)
Q Consensus 165 a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
||+++++.|+++|++| ||. .....|... .. ........+..+..
T Consensus 71 a~~~~~~~Gi~~e~~y-------PY~----------~~~~~C~~~------------~~-------~~~~~i~~~~~i~~ 114 (210)
T cd02248 71 AFEYVKNGGLASESDY-------PYT----------GKDGTCKYN------------SS-------KVGAKITGYSNVPP 114 (210)
T ss_pred hHHHHHHCCcCccccC-------Ccc----------CCCCCccCC------------CC-------cccEEEeeEEEcCC
Confidence 9999999999999999 999 444455443 00 01122233444543
Q ss_pred -cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCCCCCeEE
Q psy15353 245 -NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVK 323 (344)
Q Consensus 245 -~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~ 323 (344)
++++||++|+++|||+++|.++++|+.|++|||..+.|....+ +|||+|||||++.+.+|||||||||++||++||||
T Consensus 115 ~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~-~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~ 193 (210)
T cd02248 115 GDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNL-NHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIR 193 (210)
T ss_pred CcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcC-CEEEEEEEEeecCCceEEEEEcCCCCccccCcEEE
Confidence 4889999999999999999999999999999999887434555 79999999999889999999999999999999999
Q ss_pred EEccCCccccccccee
Q psy15353 324 ILRGKYECAFEYLIAA 339 (344)
Q Consensus 324 i~~g~~~cgi~~~~~~ 339 (344)
|+++.|.|||++++..
T Consensus 194 i~~~~~~cgi~~~~~~ 209 (210)
T cd02248 194 IARGSNLCGIASYASY 209 (210)
T ss_pred EEcCCCccCceeeeec
Confidence 9999999999987653
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.4e-54 Score=427.47 Aligned_cols=230 Identities=26% Similarity=0.398 Sum_probs=180.5
Q ss_pred CCCCCCceecCccCCCCCCCccCCCCCC---CCchHHHHHHHHHHHHHHHHhCCC----CCCCCCHHHHHhhcCcCCCCC
Q psy15353 81 SATVPDRFDAREQWPNCGTIGHVPDTGA---CAAPHIFAAVGAFSDRRCIKSKGQ----QNRPLSTEYVASCCKICRYDD 153 (344)
Q Consensus 81 ~~~lP~~~D~R~~~~~~~~i~pv~dQg~---cgsCwAfA~~~~le~~~~i~~~~~----~~~~lS~q~l~dc~~~~~~~~ 153 (344)
..+||++||||+.. ....++||||||. ||||||||++++||++++|++++. ..+.||+|+|+||+..
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~----- 275 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY----- 275 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-----
Confidence 56899999999982 1236899999999 999999999999999999998642 2578999999999842
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeece
Q psy15353 154 NKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDK 233 (344)
Q Consensus 154 ~~gC~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~ 233 (344)
++||+||++..|++|++++|+++|++| |.||.... +....|... + .....+..+.
T Consensus 276 n~GCdGG~p~~A~~yi~~~GI~tE~dY-----~~PY~~~d-------g~~~~Ck~~----------~---~~~~y~~~~~ 330 (548)
T PTZ00364 276 GQGCAGGFPEEVGKFAETFGILTTDSY-----YIPYDSGD-------GVERACKTR----------R---PSRRYYFTNY 330 (548)
T ss_pred CCCCCCCcHHHHHHHHHhCCccccccc-----CCCCCCCC-------CCCCCCCCC----------c---ccceeeeeee
Confidence 489999999999999999999998776 55998311 111234432 0 0111111222
Q ss_pred eeeeeeEEeCCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecC--------CC-C---------CCCCCCeEEEEE
Q psy15353 234 HRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHT--------SN-A---------KLENYLHSGKLI 295 (344)
Q Consensus 234 ~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~--------~~-~---------~~~~~~Hav~iV 295 (344)
.+...++.+..++++||.+|+++|||+++|+++++|+.|++|||... .| . .... +|||+||
T Consensus 331 ~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~-nHAVlIV 409 (548)
T PTZ00364 331 GPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNV-NHTVLII 409 (548)
T ss_pred EEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccC-CeEEEEE
Confidence 22333444556788999999999999999999989999999998631 11 1 1223 7999999
Q ss_pred Eecc-CCCeeeEEEEcCCCC--CCCCCCeEEEEccCCcccccccceeeec
Q psy15353 296 GWGT-ENGTPYWLVINTWGP--HWGDRGTVKILRGKYECAFEYLIAAGKP 342 (344)
Q Consensus 296 Gyg~-~~g~~ywivkNSWG~--~WG~~Gy~~i~~g~~~cgi~~~~~~~~p 342 (344)
|||+ ++|.+|||||||||+ +|||+|||||+||.|+||||++++++.|
T Consensus 410 GYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 410 GWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred EecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 9997 578999999999999 9999999999999999999999998876
No 12
>KOG1544|consensus
Probab=100.00 E-value=1e-56 Score=402.97 Aligned_cols=297 Identities=30% Similarity=0.534 Sum_probs=242.0
Q ss_pred ccCcHHHHHHHHhCCCcEEEeec--CCCCCcHHHHHHHccccccCCCCCCCCCCCCCCccCCCCCCCCCCceecCccCCC
Q psy15353 19 YKFSDAYIDQINREANTWTAGRN--FPANLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQWPN 96 (344)
Q Consensus 19 ~~~~~~~I~~~N~~~~~~~~~~n--f~~~~~~e~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~D~R~~~~~ 96 (344)
-.+.+++|+++|..+.+|+++.. |..++.++-++..||+.++.. .+..++ +.....+....||+.||.|++||
T Consensus 146 CLv~Pd~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~---sv~nMN-Ei~~~l~p~~~LPE~F~As~KWp- 220 (470)
T KOG1544|consen 146 CLVDPDMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSS---SVMNMN-EIYTVLNPGEVLPEAFEASEKWP- 220 (470)
T ss_pred eecCHHHHHHHhcCCccccccchhhhhcccccccceeeecccCchh---hhhhHH-hHhhccCcccccchhhhhhhcCC-
Confidence 34679999999999999999976 998999999998899887654 444332 22223355678999999999999
Q ss_pred CCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHHHHHHHcCCCC
Q psy15353 97 CGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVT 176 (344)
Q Consensus 97 ~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~~~~~~~Gi~~ 176 (344)
+++.|+.|||+|++.|||+++++..++++|++.++.+..||+|+|++|..... +||+||+++.||-||.+.|+++
T Consensus 221 -~liH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q----~GC~gG~lDRAWWYlRKrGvVs 295 (470)
T KOG1544|consen 221 -NLIHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQ----QGCRGGRLDRAWWYLRKRGVVS 295 (470)
T ss_pred -ccccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhh----ccCccCcccchheeeecccccc
Confidence 57999999999999999999999999999999998889999999999986544 8999999999999999999998
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC----CCccccccccCCCCcceeeeceeeeeeeEEeCCcHHHHHHH
Q psy15353 177 GGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKV----PKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKE 252 (344)
Q Consensus 177 e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~----~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~ 252 (344)
..-| ||... ++ +..+.|...+. ...+....| ..++.. .++.+..+..|.++.++++||++
T Consensus 296 dhCY-------P~~~d-----Q~-~~~~~C~m~sR~~grgkRqat~~C-Pn~~~~--Sn~iyq~tPPYrVSSnE~eImkE 359 (470)
T KOG1544|consen 296 DHCY-------PFSGD-----QA-GPAPPCMMHSRAMGRGKRQATAHC-PNSYVN--SNDIYQVTPPYRVSSNEKEIMKE 359 (470)
T ss_pred cccc-------cccCC-----CC-CCCCCceeeccccCcccccccCcC-CCcccc--cCceeeecCCeeccCCHHHHHHH
Confidence 6555 99831 11 44556665421 122233345 333332 12233346788999999999999
Q ss_pred HHhCCCEEEEEEecCCcccCCCceEecCCCC-------CCCCCCeEEEEEEeccCC-----CeeeEEEEcCCCCCCCCCC
Q psy15353 253 ILAHGPTTATFALYDDFYHYKSGVYKHTSNA-------KLENYLHSGKLIGWGTEN-----GTPYWLVINTWGPHWGDRG 320 (344)
Q Consensus 253 l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~-------~~~~~~Hav~iVGyg~~~-----g~~ywivkNSWG~~WG~~G 320 (344)
||++|||.+.|.|.+||++|++|||++.... ...+ .|+|.|.|||++. ..+|||..||||+.|||+|
T Consensus 360 lM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~g-tHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~G 438 (470)
T KOG1544|consen 360 LMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHG-THSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG 438 (470)
T ss_pred HHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcc-cceEEEeecccccCCCCCeeEEEEeecccccccccCc
Confidence 9999999999999999999999999986521 1356 8999999999863 3689999999999999999
Q ss_pred eEEEEccCCcccccccceeeec
Q psy15353 321 TVKILRGKYECAFEYLIAAGKP 342 (344)
Q Consensus 321 y~~i~~g~~~cgi~~~~~~~~p 342 (344)
||||.||.|+|.||++++++.-
T Consensus 439 YFriLRGvNecdIEsfvIgAWG 460 (470)
T KOG1544|consen 439 YFRILRGVNECDIESFVIGAWG 460 (470)
T ss_pred eEEEeccccchhhhHhhhhhhh
Confidence 9999999999999999998753
No 13
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=6.2e-54 Score=384.06 Aligned_cols=214 Identities=32% Similarity=0.591 Sum_probs=173.3
Q ss_pred CCCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchh
Q psy15353 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVF 163 (344)
Q Consensus 84 lP~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~ 163 (344)
||++||||+.+ +.++||+||+.||+|||||++++||++++++.+ ...+.||+|+|++|.... +.+|+||++.
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~-~~~~~lS~q~l~~~~~~~----~~~c~gg~~~ 72 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNN-GKNVDLSEQYLIDCSNKY----NKGCDGGSPF 72 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHT-SSCEEB-HHHHHHHSTGT----SSTTBBBEHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccc-cccccccccccccccccc----ccccccCccc
Confidence 79999999962 369999999999999999999999999999985 346999999999998622 3799999999
Q ss_pred HHHHHHHH-cCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC-CCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEE
Q psy15353 164 RTWNFLHK-RGSVTGGDYGDRTGCQPSTISPCSHHGSAPTL-PSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYW 241 (344)
Q Consensus 164 ~a~~~~~~-~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~-~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~ 241 (344)
.|++++++ .|+++|++| ||. +.. ..|... ..... ......+..
T Consensus 73 ~a~~~~~~~~Gi~~e~~~-------pY~----------~~~~~~c~~~--------------~~~~~----~~~i~~~~~ 117 (219)
T PF00112_consen 73 DALKYIKNNNGIVTEEDY-------PYN----------GNENPTCKSK--------------KSNSY----YVKIKGYGK 117 (219)
T ss_dssp HHHHHHHHHTSBEBTTTS---------S----------SSSSCSSCHS--------------GGGEE----EBEESEEEE
T ss_pred ccceeecccCcccccccc-------ccc----------cccccccccc--------------ccccc----ccccccccc
Confidence 99999999 899999999 999 433 344432 00000 111222333
Q ss_pred eC-CcHHHHHHHHHhCCCEEEEEEecC-CcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCCCC
Q psy15353 242 VD-DNEDAIKKEILAHGPTTATFALYD-DFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDR 319 (344)
Q Consensus 242 ~~-~~~~~ik~~l~~~gPV~v~~~v~~-~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~ 319 (344)
+. .++++||++|+++|||+++|.+.+ +|+.|++|||..+.|....+ +|||+|||||++.+++|||||||||++||++
T Consensus 118 ~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~-~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~ 196 (219)
T PF00112_consen 118 VKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESG-GHAVLIVGYDDENGKGYWIVKNSWGTDWGDN 196 (219)
T ss_dssp EESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSE-EEEEEEEEEEEETTEEEEEEE-SBTTTSTBT
T ss_pred ccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccccccccc-cccccccccccccceeeEeeehhhCCccCCC
Confidence 43 359999999999999999999988 69999999999986555566 8999999999999999999999999999999
Q ss_pred CeEEEEccCC-cccccccceeee
Q psy15353 320 GTVKILRGKY-ECAFEYLIAAGK 341 (344)
Q Consensus 320 Gy~~i~~g~~-~cgi~~~~~~~~ 341 (344)
|||||+|+.+ +||||+++++++
T Consensus 197 Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 197 GYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp TEEEEESSSSSGGGTTSSEEEEE
T ss_pred eEEEEeeCCCCcCccCceeeecC
Confidence 9999999987 999999999985
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=2.6e-49 Score=342.96 Aligned_cols=169 Identities=36% Similarity=0.706 Sum_probs=148.9
Q ss_pred CCCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchh
Q psy15353 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVF 163 (344)
Q Consensus 84 lP~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~ 163 (344)
||++||||++ +.++||+||+.||+|||||++++||+++++++++ .+.||+|+|++|... + +.+|+||.+.
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~--~~~lS~q~l~~C~~~-~---~~gC~GG~~~ 70 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGK--LVSLSEQQLVDCSTG-G---NNGCNGGLPD 70 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCC--ccccCHHHHhhhcCC-C---CCCCCCcCHH
Confidence 6999999998 6799999999999999999999999999999875 489999999999864 2 4699999999
Q ss_pred HHHHHHHHc-CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEe
Q psy15353 164 RTWNFLHKR-GSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWV 242 (344)
Q Consensus 164 ~a~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~ 242 (344)
.|++|++++ |+++|++| ||. .
T Consensus 71 ~a~~~~~~~~Gi~~e~~~-------PY~-------------------------------~-------------------- 92 (174)
T smart00645 71 NAFEYIKKNGGLETESCY-------PYT-------------------------------G-------------------- 92 (174)
T ss_pred HHHHHHHHcCCccccccc-------Ccc-------------------------------c--------------------
Confidence 999999998 99998888 998 1
Q ss_pred CCcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccC-CCeeeEEEEcCCCCCCCCCCe
Q psy15353 243 DDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE-NGTPYWLVINTWGPHWGDRGT 321 (344)
Q Consensus 243 ~~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy 321 (344)
++.+.+. +|++|++|||+.+.|+.... +|+|+|||||.+ +|++|||||||||+.||++||
T Consensus 93 -----------------~~~~~~~-~f~~Y~~Gi~~~~~~~~~~~-~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~ 153 (174)
T smart00645 93 -----------------SVAIDAS-DFQFYKSGIYDHPGCGSGTL-DHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGY 153 (174)
T ss_pred -----------------EEEEEcc-cccCCcCeEECCCCCCCCcc-cEEEEEEEEeecCCCeeEEEEECCCCCCcccCeE
Confidence 4555554 69999999998865455444 799999999987 899999999999999999999
Q ss_pred EEEEccC-Cccccccccee
Q psy15353 322 VKILRGK-YECAFEYLIAA 339 (344)
Q Consensus 322 ~~i~~g~-~~cgi~~~~~~ 339 (344)
|||+|+. |+|||+....+
T Consensus 154 ~~i~~~~~~~c~i~~~~~~ 172 (174)
T smart00645 154 FRIARGKNNECGIEASVAS 172 (174)
T ss_pred EEEEcCCCCccCceeeeee
Confidence 9999998 99999876643
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=3.2e-45 Score=328.38 Aligned_cols=208 Identities=23% Similarity=0.312 Sum_probs=160.8
Q ss_pred ceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCchhHHH
Q psy15353 87 RFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTW 166 (344)
Q Consensus 87 ~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~~~~a~ 166 (344)
.+|||+. + ++||+|||.||+|||||+++++|++++++.++...+.||+|+|++|........+.+|.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4899998 6 8999999999999999999999999999876223589999999999864321113699999999999
Q ss_pred H-HHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeeceeeeeeeEEeC-C
Q psy15353 167 N-FLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVD-D 244 (344)
Q Consensus 167 ~-~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~-~ 244 (344)
. ++++.|+++|++| ||. .....|.... . .... ........+..+. .
T Consensus 76 ~~~~~~~Gi~~e~~~-------Py~----------~~~~~~~~~~-~---------~~~~-----~~~~~~~~y~~~~~~ 123 (223)
T cd02619 76 LKLVALKGIPPEEDY-------PYG----------AESDGEEPKS-E---------AALN-----AAKVKLKDYRRVLKN 123 (223)
T ss_pred HHHHHHcCCCccccC-------CCC----------CCCCCCCCCC-c---------cchh-----hcceeecceeEeCch
Confidence 8 8899999999999 999 3333333210 0 0000 0011122223343 3
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEe-----cCCCCCCCCCCeEEEEEEeccCC--CeeeEEEEcCCCCCCC
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYK-----HTSNAKLENYLHSGKLIGWGTEN--GTPYWLVINTWGPHWG 317 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~-----~~~~~~~~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WG 317 (344)
++++||++|+++|||+++|.++++|..|++|+|. ...++...+ +|||+|||||++. +++|||||||||+.||
T Consensus 124 ~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg 202 (223)
T cd02619 124 NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLG-GHAVVIVGYDDNYVEGKGAFIVKNSWGTDWG 202 (223)
T ss_pred hHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccC-CeEEEEEeecCCCCCCCCEEEEEeCCCCccc
Confidence 5789999999999999999999999999999873 222345556 8999999999887 8999999999999999
Q ss_pred CCCeEEEEccCCcccc
Q psy15353 318 DRGTVKILRGKYECAF 333 (344)
Q Consensus 318 ~~Gy~~i~~g~~~cgi 333 (344)
++||+||+++ +.+.+
T Consensus 203 ~~Gy~~i~~~-~~~~~ 217 (223)
T cd02619 203 DNGYGRISYE-DVYEM 217 (223)
T ss_pred cCCEEEEehh-hhhhh
Confidence 9999999998 33433
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=365.15 Aligned_cols=224 Identities=21% Similarity=0.350 Sum_probs=162.7
Q ss_pred CCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhhcCcCCCCCCCCCCCCc-hhHHHHHHHHc
Q psy15353 94 WPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGS-VFRTWNFLHKR 172 (344)
Q Consensus 94 ~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc~~~~~~~~~~gC~GG~-~~~a~~~~~~~ 172 (344)
+++|....||||||.||+|||||++++||++++|++++ .+.||+|+|+||+...+ +.||.||. +..++.|++++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~--~v~LSeQqLVDCs~~~g---n~GC~GG~~~~efl~yI~e~ 612 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYE--PHAISALYIANCSKGEH---KDRCDEGSNPLEFLQIIEDN 612 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCC--CcccCHHHHHhcccccC---CCCCCCCCcHHHHHHHHHHc
Confidence 57787788999999999999999999999999999764 48999999999986433 57999997 66677999888
Q ss_pred C-CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeec--eee-eeeeEEeC-----
Q psy15353 173 G-SVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQD--KHR-TTLTYWVD----- 243 (344)
Q Consensus 173 G-i~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~--~~~-~~~~~~~~----- 243 (344)
| +++|.+| ||... +..+.|+.....-..|. .......+... ... ...+..+.
T Consensus 613 GgLptESdY-------PYt~k--------~~~g~Cp~~~~~w~n~~----~~~kll~~~~~~~~~i~~kgY~~~~s~~~~ 673 (1004)
T PTZ00462 613 GFLPADSNY-------LYNYT--------KVGEDCPDEEDHWMNLL----DHGKILNHNKKEPNSLDGKAYRAYESEHFH 673 (1004)
T ss_pred CCCcccccC-------CCccC--------CCCCCCCCCcccccccc----cccccccccccccceeeccceEEecccccc
Confidence 5 7888888 99832 23445654210000000 00000000000 000 01111111
Q ss_pred ----CcHHHHHHHHHhCCCEEEEEEecCCcccCC-CceEecCCCCCCCCCCeEEEEEEeccC-----CCeeeEEEEcCCC
Q psy15353 244 ----DNEDAIKKEILAHGPTTATFALYDDFYHYK-SGVYKHTSNAKLENYLHSGKLIGWGTE-----NGTPYWLVINTWG 313 (344)
Q Consensus 244 ----~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~-~Giy~~~~~~~~~~~~Hav~iVGyg~~-----~g~~ywivkNSWG 313 (344)
..+++||.+|+..|||+|+|++. +|+.|. +|||....|+.... +|||+|||||.+ +|+.|||||||||
T Consensus 674 ~n~d~~i~~IK~eI~~kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~-nHAVlIVGYGt~in~eg~gk~YWIVRNSWG 751 (1004)
T PTZ00462 674 DKMDAFIKIIKDEIMNKGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTA-DHAVNIVGYGNYINDEDEKKSYWIVRNSWG 751 (1004)
T ss_pred cchhhHHHHHHHHHHhcCCEEEEEEee-hHHhhhcCCccccCCCCCCcC-CceEEEEEecccccccCCCCceEEEEcCCC
Confidence 11468999999999999999985 788885 89877766665444 799999999964 2678999999999
Q ss_pred CCCCCCCeEEEEc-cCCcccccccceeeecC
Q psy15353 314 PHWGDRGTVKILR-GKYECAFEYLIAAGKPK 343 (344)
Q Consensus 314 ~~WG~~Gy~~i~~-g~~~cgi~~~~~~~~p~ 343 (344)
+.|||+|||||.| |.+.|||.....+++.+
T Consensus 752 t~WGEnGYFKI~r~g~n~CGin~i~t~~~fn 782 (1004)
T PTZ00462 752 KYWGDEGYFKVDMYGPSHCEDNFIHSVVIFN 782 (1004)
T ss_pred CCcCCCeEEEEEeCCCCCCccchheeeeeEe
Confidence 9999999999998 78999999877776643
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=225.28 Aligned_cols=200 Identities=19% Similarity=0.240 Sum_probs=125.8
Q ss_pred CCCCCCceecCccCCCCCCCccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHhh-----cCcCCCCCCC
Q psy15353 81 SATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASC-----CKICRYDDNK 155 (344)
Q Consensus 81 ~~~lP~~~D~R~~~~~~~~i~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~dc-----~~~~~~~~~~ 155 (344)
...+|+.||||+. |.++||||||.||+||||+++++||+.+.-.. ...+|+..+..- .+.+.+ .
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~----~w~~s~~nm~~ll~~~ye~~fd~---~ 164 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES----AWDFSENNMKNLLGVPYEKGFDY---T 164 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc----cccccccchhhhcCCCccccCCC---c
Confidence 3568999999999 99999999999999999999999999875443 256666555432 221110 1
Q ss_pred CCCCCchhHHHHHHHHc-CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcceeeecee
Q psy15353 156 SCSHGSVFRTWNFLHKR-GSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKH 234 (344)
Q Consensus 156 gC~GG~~~~a~~~~~~~-Gi~~e~~y~~~e~c~PY~~~~~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~ 234 (344)
.-+||...-+..|+.+. |.+.|.+- ||. .....|..+. +..........
T Consensus 165 ~~d~g~~~m~~a~l~e~sgpv~et~d-------~y~----------~~s~~~~~~~-------------p~~k~~~~~~~ 214 (372)
T COG4870 165 SNDGGNADMSAAYLTEWSGPVYETDD-------PYS----------ENSYFSPTNL-------------PVTKHVQEAQI 214 (372)
T ss_pred cccCCccccccccccccCCcchhhcC-------ccc----------cccccCCcCC-------------chhhcccccee
Confidence 12256655555566665 77777776 887 3333333320 00000000000
Q ss_pred eeeeeEEeCCcHHHHHHHHHhCCCEEEEEEe--cCCcccCCCceEecCCCCCCCCCCeEEEEEEeccC----------CC
Q psy15353 235 RTTLTYWVDDNEDAIKKEILAHGPTTATFAL--YDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE----------NG 302 (344)
Q Consensus 235 ~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~v--~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~----------~g 302 (344)
.-...-.+ +...|++++...|-+...|.+ +..+. ...+.|.... ... + +|||+||||++. .|
T Consensus 215 i~~~~~~L--dnG~i~~~~~~yg~~s~~~~id~~~~~~-~~~~~~~~~s-~~~-~-gHAv~iVGyDDs~~~n~~~~~~~g 288 (372)
T COG4870 215 IPSRKKYL--DNGNIKAMFGFYGAVSSSMYIDATNSLG-ICIPYPYVDS-GEN-W-GHAVLIVGYDDSFDINNFKYGPPG 288 (372)
T ss_pred cccchhhh--cccchHHHHhhhccccceeEEecccccc-cccCCCCCCc-ccc-c-cceEEEEeccccccccccccCCCC
Confidence 00000012 344577777777877755554 33222 3334444433 333 3 699999999973 25
Q ss_pred eeeEEEEcCCCCCCCCCCeEEEEcc
Q psy15353 303 TPYWLVINTWGPHWGDRGTVKILRG 327 (344)
Q Consensus 303 ~~ywivkNSWG~~WG~~Gy~~i~~g 327 (344)
.+.||||||||++||++|||||+..
T Consensus 289 ~GAfiikNSWGt~wG~~GYfwisY~ 313 (372)
T COG4870 289 DGAFIIKNSWGTNWGENGYFWISYY 313 (372)
T ss_pred CceEEEECccccccccCceEEEEee
Confidence 6799999999999999999999985
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.88 E-value=3.5e-22 Score=193.76 Aligned_cols=214 Identities=17% Similarity=0.164 Sum_probs=132.9
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHh----------------hcCcCCCC-------CCCCC
Q psy15353 101 GHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS----------------CCKICRYD-------DNKSC 157 (344)
Q Consensus 101 ~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~d----------------c~~~~~~~-------~~~gC 157 (344)
.||+||++-|.||.||+...|+..+..+.+.. .+.||+.+|+- +....-.. ...-.
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~-~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLK-EFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCC-CEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 48999999999999999999999887765543 69999988764 11000000 12456
Q ss_pred CCCchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCC-C--------------------CC--------------
Q psy15353 158 SHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGS-A--------------------PT-------------- 202 (344)
Q Consensus 158 ~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~~-~--------------------~~-------------- 202 (344)
+||.-..+...+++.|+++.+.| |-+... +++.. + +.
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~-------pet~~s-~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~ 205 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVM-------PESFNS-ENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLK 205 (437)
T ss_pred CCCchHHHHHHHHHcCCCccccc-------CCCcCc-cchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999999999999999987777 533110 00000 0 00
Q ss_pred ---------CCCCCCCC---------------CCCccc---------------cccccC--CCCccee----eeceeee-
Q psy15353 203 ---------LPSCENQK---------------VPKLKC---------------HTRCTN--PTYGRGF----FQDKHRT- 236 (344)
Q Consensus 203 ---------~~~C~~~~---------------~~~~~c---------------~~~c~~--~~~~~~~----~~~~~~~- 236 (344)
-+..+... ..+|+- -..-.. +++...| ......+
T Consensus 206 ~iy~il~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~ 285 (437)
T cd00585 206 EVYRILAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGR 285 (437)
T ss_pred HHHHHHHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccc
Confidence 00000000 001110 000000 1111111 1111111
Q ss_pred -eeeEEeCCcHHHHH----HHHHhCCCEEEEEEecCCcccCCCceEecCC--------------------CCCCCCCCeE
Q psy15353 237 -TLTYWVDDNEDAIK----KEILAHGPTTATFALYDDFYHYKSGVYKHTS--------------------NAKLENYLHS 291 (344)
Q Consensus 237 -~~~~~~~~~~~~ik----~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~--------------------~~~~~~~~Ha 291 (344)
..+++++ .+.++ ++|.+++||.++.++. .|+.|++||+.... |.+... +||
T Consensus 286 ~~~y~Nvp--~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~-tHA 361 (437)
T cd00585 286 PILYLNVP--MDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLM-THA 361 (437)
T ss_pred cceEEecC--HHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcC-CeE
Confidence 1334443 45555 6778899999999996 57899999995431 123333 799
Q ss_pred EEEEEeccC-CCe-eeEEEEcCCCCCCCCCCeEEEEcc
Q psy15353 292 GKLIGWGTE-NGT-PYWLVINTWGPHWGDRGTVKILRG 327 (344)
Q Consensus 292 v~iVGyg~~-~g~-~ywivkNSWG~~WG~~Gy~~i~~g 327 (344)
|+|||||.+ +|+ .||+||||||+.||++|||+|+++
T Consensus 362 M~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 362 MVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 999999975 476 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.61 E-value=1e-14 Score=141.99 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=111.0
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH----------------hhcCcCCC-------CCCCCC
Q psy15353 101 GHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA----------------SCCKICRY-------DDNKSC 157 (344)
Q Consensus 101 ~pv~dQg~cgsCwAfA~~~~le~~~~i~~~~~~~~~lS~q~l~----------------dc~~~~~~-------~~~~gC 157 (344)
.||.||++-|.||.||+...|+..+..+.+. ..+.||+.+|. ++....-. -...-.
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l-~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNL-KDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT--SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCC-CceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 4899999999999999999999998877653 36999998875 22211000 001246
Q ss_pred CCCchhHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCC--------------------CCCCC--------------
Q psy15353 158 SHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHG--------------------SAPTL-------------- 203 (344)
Q Consensus 158 ~GG~~~~a~~~~~~~Gi~~e~~y~~~e~c~PY~~~~~~~~~--------------------~~~~~-------------- 203 (344)
+||.-..+...+++.|+|+.+.| |-+....+... .++..
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~m-------pet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~ 207 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVM-------PETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAE 207 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGS-------TTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCcCcHhhC-------CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 79988889999999999988888 54321000000 00000
Q ss_pred ---------CCCCCCC---------------CCCcc---------------ccccc--cCCCCcceeee---ceee-e--
Q psy15353 204 ---------PSCENQK---------------VPKLK---------------CHTRC--TNPTYGRGFFQ---DKHR-T-- 236 (344)
Q Consensus 204 ---------~~C~~~~---------------~~~~~---------------c~~~c--~~~~~~~~~~~---~~~~-~-- 236 (344)
+.++..+ ..+|. |-..- ...++...|.- +... +
T Consensus 208 iy~il~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~ 287 (438)
T PF03051_consen 208 IYRILAIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRP 287 (438)
T ss_dssp HHHHHHHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EE
T ss_pred HHHHHHHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcc
Confidence 0000000 00011 00000 01111111110 0000 1
Q ss_pred eeeEEeCCc--HHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCC--------------------CCCCCCCeEEEE
Q psy15353 237 TLTYWVDDN--EDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSN--------------------AKLENYLHSGKL 294 (344)
Q Consensus 237 ~~~~~~~~~--~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~--------------------~~~~~~~Hav~i 294 (344)
..+++++.+ .+.+.++|..+.||..+-+|.+ +...+.||.+...- ..... +|||+|
T Consensus 288 ~~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~-tHAM~i 365 (438)
T PF03051_consen 288 VRYLNVPIDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTM-THAMVI 365 (438)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS---EEEEEE
T ss_pred eeEeccCHHHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCC-ceeEEE
Confidence 134555422 2345567777899999999975 45667888754320 22344 899999
Q ss_pred EEecc-CCCe-eeEEEEcCCCCCCCCCCeEEEEc
Q psy15353 295 IGWGT-ENGT-PYWLVINTWGPHWGDRGTVKILR 326 (344)
Q Consensus 295 VGyg~-~~g~-~ywivkNSWG~~WG~~Gy~~i~~ 326 (344)
||.+. ++|. .+|+|+||||+..|.+|||.|+.
T Consensus 366 tGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 366 TGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp EEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred EEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 99996 5665 69999999999999999999985
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.60 E-value=3.5e-07 Score=84.36 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=51.4
Q ss_pred HHHhCCCEEEEEEecCCcccCCCceEecCC-----C---------------CCCCCCCeEEEEEEeccC-CCe-eeEEEE
Q psy15353 252 EILAHGPTTATFALYDDFYHYKSGVYKHTS-----N---------------AKLENYLHSGKLIGWGTE-NGT-PYWLVI 309 (344)
Q Consensus 252 ~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~-----~---------------~~~~~~~Hav~iVGyg~~-~g~-~ywivk 309 (344)
.|..+.+|-.+-+|. .+..-+.||..... . +..+ ..|||+|.|.+.+ +|. --|.|.
T Consensus 307 q~qagetVwFG~dvg-q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSL-mTHAMvlTGvd~d~~g~p~rwkVE 384 (444)
T COG3579 307 QMQAGETVWFGCDVG-QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESL-MTHAMVLTGVDLDETGNPLRWKVE 384 (444)
T ss_pred HHhcCCcEEeecCch-hhcccccceeeehhccchhhhCCCcccchhhccccchHH-HHHHHHhhccccccCCCceeeEee
Confidence 345577999888884 45666667643211 0 1122 3699999999954 443 369999
Q ss_pred cCCCCCCCCCCeEEEEc
Q psy15353 310 NTWGPHWGDRGTVKILR 326 (344)
Q Consensus 310 NSWG~~WG~~Gy~~i~~ 326 (344)
||||.+=|.+|||-++-
T Consensus 385 NSWG~d~G~~GyfvaSd 401 (444)
T COG3579 385 NSWGKDVGKKGYFVASD 401 (444)
T ss_pred cccccccCCCceEeehH
Confidence 99999999999998763
No 21
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=98.19 E-value=1.9e-06 Score=55.74 Aligned_cols=40 Identities=45% Similarity=0.721 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCcEEEeecCCCCCcHHHHHHHccccccC
Q psy15353 21 FSDAYIDQINREANTWTAGRNFPANLSEEYLRQFLIADAKY 61 (344)
Q Consensus 21 ~~~~~I~~~N~~~~~~~~~~nf~~~~~~e~~~~~~g~~~~~ 61 (344)
+++++|+.+|+.+.+|+||.||. .++.+++++++|....+
T Consensus 1 Lsde~I~~IN~~~~tWkAG~NF~-~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRNFE-NTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE----S-SB-HHHHHHCS-B-TTS
T ss_pred CCHHHHHHHHcCCCcccCCCCCC-CCCHHHHHHHcCCCCCC
Confidence 47899999999989999999995 89999999999987643
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=97.03 E-value=0.00038 Score=48.73 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred ccccCcHHHHHHHH-hCCCcEEEeec-CCCCCcHHH
Q psy15353 17 ELYKFSDAYIDQIN-REANTWTAGRN-FPANLSEEY 50 (344)
Q Consensus 17 ~~~~~~~~~I~~~N-~~~~~~~~~~n-f~~~~~~e~ 50 (344)
.++..|.++|++|| ....+|++++| |+|++.+||
T Consensus 23 ~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 23 AIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 46777999999999 45569999999 997777765
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.84 E-value=0.027 Score=48.04 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=38.0
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEecc-CCCeeeEEEEcCCC
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT-ENGTPYWLVINTWG 313 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG 313 (344)
+.+++++.+.++.|+.+..+..+. . . +... +||++||||-. .+|.++.++-|=|=
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~~------~-----~-~~~~--gHAlavvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVEQ------T-----N-GPHA--GHALAVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETTS------C-----T-TB----EEEEEEEEEEEETTSEEEEEEE-TT-
T ss_pred CHHHHHHHHHcCCCeEEEeccccc------C-----C-CCcc--ceeEEEEeeeecCCCCeEEEEeCCcc
Confidence 578999999999999887774321 1 1 2334 59999999987 56799999988884
No 24
>KOG4128|consensus
Probab=96.47 E-value=0.004 Score=57.89 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHh----CCCEEEEEEecCCcccCCCceEe-----cC--------C-C-------CCCCCCCeEEEEEEec
Q psy15353 244 DNEDAIKKEILA----HGPTTATFALYDDFYHYKSGVYK-----HT--------S-N-------AKLENYLHSGKLIGWG 298 (344)
Q Consensus 244 ~~~~~ik~~l~~----~gPV~v~~~v~~~f~~y~~Giy~-----~~--------~-~-------~~~~~~~Hav~iVGyg 298 (344)
.+.+-|++.+.+ +.||-.+-++. .|..-++|+.+ .+ . . ...+- .|||++.|-|
T Consensus 304 q~~d~l~k~vv~sl~~~kaVwfgcd~~-k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlm-thAml~T~v~ 381 (457)
T KOG4128|consen 304 QSMDILMKIVVTSLEGDKAVWFGCDIR-KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLM-THAMLLTSVG 381 (457)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccH-hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHH-HHHHHhhhcc
Confidence 345555554443 56888887774 45666666532 11 1 0 11223 6999999998
Q ss_pred c----CCCeeeEEEEcCCCCCCCCCCeEEEE
Q psy15353 299 T----ENGTPYWLVINTWGPHWGDRGTVKIL 325 (344)
Q Consensus 299 ~----~~g~~ywivkNSWG~~WG~~Gy~~i~ 325 (344)
. +.+-.-|-|.||||.+-|.+||..|.
T Consensus 382 ~kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 382 LKDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred ccCcccCCchhhhhhchhhhhccccchhhhh
Confidence 3 23556799999999999999996553
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=95.79 E-value=0.043 Score=44.58 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHhCCCEEEEEEec-CCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCC
Q psy15353 243 DDNEDAIKKEILAHGPTTATFALY-DDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTW 312 (344)
Q Consensus 243 ~~~~~~ik~~l~~~gPV~v~~~v~-~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 312 (344)
..+.+.|+++|.++.||++.+... ... ....+... .+ +|.|+|+||+.+. +++|..+|
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~~-----~~-~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDGT-----YG-GHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE------TT-EEEEEEEEE-SSE----EEEE-TT
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCCC-----cC-CEEEEEEEEeCCC---EEEEeCCC
Confidence 356899999999999999999842 111 12222221 13 6999999997653 78888877
No 26
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=95.46 E-value=0.0057 Score=42.27 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=27.1
Q ss_pred ccccCcHHHHHHHHhCC-CcEEEeec-CCCCCcHH
Q psy15353 17 ELYKFSDAYIDQINREA-NTWTAGRN-FPANLSEE 49 (344)
Q Consensus 17 ~~~~~~~~~I~~~N~~~-~~~~~~~n-f~~~~~~e 49 (344)
.++..|.+.|+.+|..+ .+|++++| |+|++.+|
T Consensus 23 ~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 23 EIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 46667899999999876 59999999 99776654
No 27
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=89.61 E-value=1.4 Score=39.14 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhCCCEEEEEEecCCccc---CCCceEe---cCCC---CCCCCCCeEEEEEEeccCCCeeeEEEEc
Q psy15353 244 DNEDAIKKEILAHGPTTATFALYDDFYH---YKSGVYK---HTSN---AKLENYLHSGKLIGWGTENGTPYWLVIN 310 (344)
Q Consensus 244 ~~~~~ik~~l~~~gPV~v~~~v~~~f~~---y~~Giy~---~~~~---~~~~~~~Hav~iVGyg~~~g~~ywivkN 310 (344)
-+.++|...|..++|+++-++.. +.. -+.-... ..++ .... +|-|+|+||+.+. +-++++|
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~--GHYVVlcGyd~~~--~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQ--GHYVVLCGYDAAT--KEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCcc--EEEEEEEeecCCC--CeEEEeC
Confidence 36899999999999888888863 111 0221111 1111 2234 5999999997653 3456665
No 28
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.92 E-value=1 Score=42.22 Aligned_cols=57 Identities=18% Similarity=0.322 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEc
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVIN 310 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 310 (344)
..+.|++.|.++.||.+.++++ +..|...-| ..... .|.|+|+||++++ ..+.++-+
T Consensus 77 ~~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~-----~~~~~-~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 77 AWEELKEALDAGRPVIVWVDMY--YLPYRPNYY-----KKHHA-DHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHHhCCCceEEEeccc--cCCCCcccc-----ccccC-CcEEEEEEEeCCC-CEEEEEcC
Confidence 3568899999888999998874 223332212 11223 6999999998653 34555544
No 29
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.54 E-value=1.7 Score=37.41 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCC
Q psy15353 244 DNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWG 313 (344)
Q Consensus 244 ~~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 313 (344)
.++.+||..|.+++||.+-... |-. .. -|+|+|.||++. ++..-++||
T Consensus 121 ksl~~ik~ql~kg~PV~iw~T~---~~~--------------~s-~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 121 KSLSDIKGQLLKGRPVVIWVTN---FHS--------------YS-IHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred CcHHHHHHHHhcCCcEEEEEec---ccc--------------cc-eeeeEeeccccc----ceEeccccc
Confidence 5789999999999999877665 221 11 499999999765 566667775
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=77.63 E-value=7.7 Score=31.29 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCC
Q psy15353 249 IKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTW 312 (344)
Q Consensus 249 ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 312 (344)
+++.|..+.||++.++.. . ....+ +|+|+|+||.. + ...+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---------~------~~~~~-gH~vVv~g~~~-~--~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---------V------SITPS-GHAMVVIGYDR-K--GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---------c------ccCCC-CeEEEEEEEcC-C--CCEEEECCC
Confidence 778888999999988751 0 11112 69999999971 1 235666665
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=69.83 E-value=14 Score=34.95 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred CeEEEEEEeccCC--CeeeEEEEcCCCC
Q psy15353 289 LHSGKLIGWGTEN--GTPYWLVINTWGP 314 (344)
Q Consensus 289 ~Hav~iVGyg~~~--g~~ywivkNSWG~ 314 (344)
+||=.|++.-.-+ |.+...+||-||.
T Consensus 236 ~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 236 GHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred CcceEEeEEEEEccCceEEEEecCCccC
Confidence 7999999998755 8999999999994
No 32
>PF15240 Pro-rich: Proline-rich
Probab=57.81 E-value=3.3 Score=35.62 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhcccccccCcH
Q psy15353 3 HILVFLLGCTLVRGELYKFSD 23 (344)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~~~~ 23 (344)
||||||-++.|++++|-..+.
T Consensus 1 MLlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred ChhHHHHHHHHHhhhcccccc
Confidence 677777788888777555443
No 33
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=55.88 E-value=52 Score=28.64 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccCCCeeeEEEEcCCCCCCC--CCCeEE
Q psy15353 246 EDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWG--DRGTVK 323 (344)
Q Consensus 246 ~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG--~~Gy~~ 323 (344)
.+.|+.+|.++.||...-.-.. . | ||.+|=||..+ .||-+ -|| || .+|||+
T Consensus 140 ~~~i~~el~~~rPV~~~g~~~~----------------~--G--HawViDGy~~~---~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNSKS----------------G--G--HAWVIDGYDSD---GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEETT----------------E--E--EEEEEEEEESS---SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCC----------------C--C--eEEEEcCccCC---CeEEE--eeC--ccCCCCCccC
Confidence 3578899999999986543311 1 4 99999999543 36665 355 44 578885
No 34
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=35.74 E-value=1e+02 Score=26.20 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=28.0
Q ss_pred cHHHHHHHHHhCCCEEEEEEecCCcccCCCceEecCCCCCCCCCCeEEEEEEeccC
Q psy15353 245 NEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTE 300 (344)
Q Consensus 245 ~~~~ik~~l~~~gPV~v~~~v~~~f~~y~~Giy~~~~~~~~~~~~Hav~iVGyg~~ 300 (344)
..+.+...|.++||+-++..... .... .|+++|.|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~---------------~~~~--~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG---------------DSWV--AHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC---------------Ccce--eeEEEEEeecCC
Confidence 46788999999999999855431 2222 399999887643
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=31.61 E-value=1.3e+02 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.1
Q ss_pred CeEEEEEEeccCCCee--eEEEEcCCCC
Q psy15353 289 LHSGKLIGWGTENGTP--YWLVINTWGP 314 (344)
Q Consensus 289 ~Hav~iVGyg~~~g~~--ywivkNSWG~ 314 (344)
+||=.|++...-++.+ -..+||-||.
T Consensus 228 ~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 228 GHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred CccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 7999999987655444 8999999983
Done!