RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15353
(344 letters)
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 283 bits (726), Expect = 1e-95
Identities = 113/256 (44%), Positives = 143/256 (55%), Gaps = 20/256 (7%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS 144
P+ FDARE+WPNC +IG + D G C + F+AV AFSDR CI+S G++N LS + + S
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60
Query: 145 CCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGSAPTLP 204
CC C C+ G W +L G VTG GCQP TI PC HH P P
Sbjct: 61 CCSGC----GDGCNGGYPDAAWKYLTTTGVVTG-------GCQPYTIPPCGHHPEGP--P 107
Query: 205 SCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFA 264
C KC C + +DKH+ Y V +E I KEI+ +GP A F
Sbjct: 108 PCCGTPYCTPKCQDGCEKT-----YEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFT 162
Query: 265 LYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKI 324
+Y+DF +YKSGVY+HTS +L H+ K+IGWG ENG PYWL N+WG WG+ G +I
Sbjct: 163 VYEDFLYYKSGVYQHTSGKQL--GGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRI 220
Query: 325 LRGKYECAFEYLIAAG 340
LRG EC E + AG
Sbjct: 221 LRGSNECGIESEVVAG 236
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 159 bits (404), Expect = 2e-47
Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 49/250 (19%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FD RE+ G + V D G C + F+AVGA R CIK+ + LS + +
Sbjct: 1 LPESFDWREK----GAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTG--KLVSLSEQQLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSV-TGGDYGDRTGCQPSTISPCSHHGSAPT 202
C N C+ G + ++ K G + T DY P T +H G
Sbjct: 55 DCDTG-----NNGCNGGLPDNAFEYIKKNGGIVTESDY-------PYT----AHDG---- 94
Query: 203 LPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTAT 262
C + +N Y + K + Y ++E+A++ + +GP +
Sbjct: 95 ------------TCKFKKSNSKY----AKIKGYGDVPY---NDEEALQAALAKNGPVSVA 135
Query: 263 FALYDD-FYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGT 321
Y+D F YKSGVYKHT + + H+ ++G+GTENG PYW+V N+WG WG+ G
Sbjct: 136 IDAYEDDFQLYKSGVYKHTECSGELD--HAVLIVGYGTENGVPYWIVKNSWGTDWGENGY 193
Query: 322 VKILRGKYEC 331
+I RG EC
Sbjct: 194 FRIARGVNEC 203
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 110 bits (277), Expect = 6e-29
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 52/250 (20%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVAS 144
P+ D RE+ G + V D G+C + F+ VGA IK+ + LS + +
Sbjct: 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTG--KLVSLSEQQLVD 54
Query: 145 CCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDY---GDRTGCQPSTISPCSHHGSAP 201
C N C+ G+ + ++ G + DY G C+ ++ +
Sbjct: 55 CS----TSGNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDGTCKYNSSKVGAKITGYS 110
Query: 202 TLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTA 261
+P +E+A+K + +GP +
Sbjct: 111 NVPP--------------------------------------GDEEALKAALANYGPVSV 132
Query: 262 TFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGT 321
F YK G+Y + N H+ L+G+GTENG YW+V N+WG WG++G
Sbjct: 133 AIDASSSFQFYKGGIYSGPCCSN-TNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGY 191
Query: 322 VKILRGKYEC 331
++I RG C
Sbjct: 192 IRIARGSNLC 201
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 106 bits (266), Expect = 5e-27
Identities = 78/268 (29%), Positives = 106/268 (39%), Gaps = 53/268 (19%)
Query: 85 PDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKS-----KGQQNRPLST 139
P FD + + V + G C + + FA+V A R I S GQQ LS
Sbjct: 2 PKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPI-LSP 60
Query: 140 EYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPSTISPCSHHGS 199
++V SC + ++ C G F F G VT + PC
Sbjct: 61 QHVLSCSQY-----SQGCDGGFPFLVGKFAEDFGIVTEDYFPYTAD----DDRPC----- 106
Query: 200 APTLPSCENQKVPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPT 259
K +C R +F D + Y NED +K EI +GP
Sbjct: 107 ----------KASPSECR---------RYYFSDYNYVGGCYGCT-NEDEMKWEIYRNGPI 146
Query: 260 TATFALYDDFYHYKSGVYKHTSNAKLENYL-----------HSGKLIGWGTE--NGTPYW 306
F +Y DF YK GVY HT N ++ + H+ L+GWG + G YW
Sbjct: 147 VVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYW 206
Query: 307 LVINTWGPHWGDRGTVKILRGKYECAFE 334
+V N+WG WG++G KI RG EC E
Sbjct: 207 IVKNSWGSSWGEKGYFKIRRGTNECGIE 234
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 89.8 bits (223), Expect = 6e-21
Identities = 69/246 (28%), Positives = 96/246 (39%), Gaps = 50/246 (20%)
Query: 102 HVPD-TGACAAPHIFAAVGAFSDRRCIKSKGQ-QNRPLSTEYVASCCKICRYDDNKSCSH 159
H+P G+C A + A +DR I KG + LS + V C SC
Sbjct: 23 HIPQYCGSCWA---HGSTSALADRINIARKGAWPSVYLSVQVVIDC------AGGGSCHG 73
Query: 160 GSVFRTWNFLHKRGSVTGGDYGDRTGCQP--STISPCSHHGSAPTLPSCENQKVPKLKCH 217
G + + HK G D T C P + C+ P +C
Sbjct: 74 GDPGGVYEYAHKHGIP------DET-CNPYQAKDGECN----------------PFNRCG 110
Query: 218 TRCTNPTYGRGFFQDKHRTTLTYWVDD-----NEDAIKKEILAHGPTTATFALYDDFYHY 272
T C +G F + Y+V D D + EI A GP + + +Y
Sbjct: 111 T-CN--PFGECFAIKNYTL---YFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENY 164
Query: 273 KSGVYKHTSNAKLENYLHSGKLIGWGT-ENGTPYWLVINTWGPHWGDRGTVKILRGKYEC 331
GVYK L N++ S + GWG ENG YW+V N+WG WG+RG +I+ Y+
Sbjct: 165 TGGVYKEYVQDPLINHIIS--VAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKG 222
Query: 332 AFEYLI 337
A L
Sbjct: 223 ARYNLA 228
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 85.3 bits (212), Expect = 6e-20
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 259 TTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGWGT--ENGTPYWLVINTWGPHW 316
T + DF YKSG+Y H H+ ++G+GT ENG YW+V N+WG W
Sbjct: 91 TGSVAIDASDFQFYKSGIYDHPGCGS-GTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDW 149
Query: 317 GDRGTVKILRGKY-ECAFEYLIAAG 340
G+ G +I RGK EC E +A+
Sbjct: 150 GENGYFRIARGKNNECGIEASVASY 174
Score = 63.4 bits (155), Expect = 5e-12
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 84 VPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVA 143
+P+ FD R++ T V D G C + F+A GA R CIK+ LS + +
Sbjct: 1 LPESFDWRKKG--AVTP--VKDQGQCGSCWAFSATGALEGRYCIKTGKL--VSLSEQQLV 54
Query: 144 SCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGDY 180
C N C+ G + ++ K G +
Sbjct: 55 DCSG----GGNCGCNGGLPDNAFEYIKKNGGLETESC 87
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 75.6 bits (186), Expect = 5e-16
Identities = 49/240 (20%), Positives = 71/240 (29%), Gaps = 45/240 (18%)
Query: 105 DTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFR 164
G+C A FA+ A IK + LS +Y+ C N SC G
Sbjct: 17 SRGSCWA---FASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLS 73
Query: 165 TWNFLHKR-GSVTGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNP 223
L G DY P + + K+
Sbjct: 74 ALLKLVALKGIPPEEDY-------PYGAESDGEEPKSEAALNAAKVKL------------ 114
Query: 224 TYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNA 283
+R L N + IK+ + GP A F +Y F K G+
Sbjct: 115 --------KDYRRVLKN----NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVY 162
Query: 284 KLENYLHSGK----LIGWGTEN--GTPYWLVINTWGPHWGDRGTVKI----LRGKYECAF 333
L G ++G+ G ++V N+WG WGD G +I + A
Sbjct: 163 LLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYEDVYEMTFGAN 222
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 69.0 bits (168), Expect = 4e-13
Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 56/306 (18%)
Query: 45 NLSEEYLRQFLIADAKYFDQSDRPLPGDRKTYDPEYSATVPDRFDAREQWPNCGTIGHVP 104
+LSE + A YF + + + + SA VPD D RE+ G + V
Sbjct: 88 DLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSA-VPDAVDWREK----GAVTPVK 142
Query: 105 DTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFR 164
+ GAC + F+AVG + + LS + + SC + C G + +
Sbjct: 143 NQGACGSCWAFSAVGNIESQWAVAGHKLVR--LSEQQLVSC-----DHVDNGCGGGLMLQ 195
Query: 165 TWNFL--HKRGSV-TGGDYGDRTGCQPSTISPCSHHGSAPTLPSCENQK--VPKLKCHTR 219
+ ++ + G+V T Y P S +G +P C N P
Sbjct: 196 AFEWVLRNMNGTVFTEKSY-------PYV----SGNGD---VPECSNSSELAP------- 234
Query: 220 CTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKH 279
G D + + ++ +E + + +GP + F Y SGV
Sbjct: 235 --------GARIDGYVS-----MESSERVMAAWLAKNGPI-SIAVDASSFMSYHSGVLTS 280
Query: 280 TSNAKLENYLHSGKLIGWGTENGTPYWLVINTWGPHWGDRGTVKILRGKYECAF-EYLIA 338
+L H L+G+ PYW++ N+WG WG++G V++ G C Y ++
Sbjct: 281 CIGEQLN---HGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVS 337
Query: 339 AGKPKN 344
++
Sbjct: 338 VHVSQS 343
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 68.8 bits (168), Expect = 1e-12
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 23/106 (21%)
Query: 246 EDAIKKEILAHGPTTATFALYDDFYHYKSGVY----------------KHTSNAKL---E 286
E + EI +GP A+F DFY Y GVY KH + E
Sbjct: 557 EKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWE 616
Query: 287 NYLHSGKLIGWGTE--NGTP--YWLVINTWGPHWGDRGTVKILRGK 328
H+ L+GWG E NG YW+ N+WG +WG G KI+RGK
Sbjct: 617 KVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK 662
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 63.8 bits (155), Expect = 4e-11
Identities = 65/290 (22%), Positives = 95/290 (32%), Gaps = 70/290 (24%)
Query: 71 GDRKTYDPEYSATVPDRFDAREQWPNCGTIGHVP---DTGA---CAAPHIFAAVGAFSDR 124
G R+++ + P + W + G +P C + ++ AA+ A R
Sbjct: 192 GFRQSFSHQLGDPPPAAWS----WGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMAR 247
Query: 125 RCIKSK-----GQQNRPLSTEYVASCCKICRYDDNKSCSHGSVFRTWNFLHKRGSVTGGD 179
+ S GQQ LS +V C + + C+ G F G +T
Sbjct: 248 VMVASNRTDPLGQQTF-LSARHVLDCSQY-----GQGCAGGFPEEVGKFAETFGILTTDS 301
Query: 180 YGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHTRCTNPTYG--RGFFQDKHRTT 237
Y P R R +F +
Sbjct: 302 Y------------------YIPYDSG---------DGVERACKTRRPSRRYYFTNYGPLG 334
Query: 238 LTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYL-------- 289
Y + D I EI HGP A+ D+Y+ + L++Y
Sbjct: 335 GYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPL 394
Query: 290 ---------HSGKLIGWGT-ENGTPYWLVINTWG--PHWGDRGTVKILRG 327
H+ +IGWGT ENG YWLV++ WG W D GT KI RG
Sbjct: 395 RHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARG 444
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 57.8 bits (140), Expect = 3e-09
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 211 VPKLKCHTRCTNPTYGRGFFQDKHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFY 270
VP L +C + + + +Y V +D + K L PT A+ +
Sbjct: 320 VPYLAKDGKCVVSSTKKVYID-------SYLVAKGKDVLNKS-LVISPTVVYIAVSRELL 371
Query: 271 HYKSGVYKHTSNAKLENYL-HSGKLIGWG--TENGTPYWLVINTWGPHWGDRGTVKILRG 327
YKSGVY N + L H+ L+G G + YW++ N+WG WG+ G +++ R
Sbjct: 372 KYKSGVY----NGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427
Query: 328 K 328
Sbjct: 428 N 428
>gnl|CDD|203856 pfam08127, Propeptide_C1, Peptidase family C1 propeptide. This
motif is found at the N terminal of some members of the
Peptidase_C1 family (pfam00112) and is involved in
activation of this peptidase.
Length = 41
Score = 49.5 bits (119), Expect = 2e-08
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 21 FSDAYIDQINREANTWTAGRNFPANLSEEYLRQFL 55
SD +I+ IN + TW AGRNF N S Y+++ L
Sbjct: 1 LSDEFIEYINSKNTTWKAGRNFE-NTSISYIKRLL 34
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 49.3 bits (117), Expect = 2e-06
Identities = 61/268 (22%), Positives = 96/268 (35%), Gaps = 59/268 (22%)
Query: 96 NCGTIGHVPDTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLSTEYVASCCKICRYDDNK 155
NC + + D G CA IFA+ +C+K G + +S Y+A+C K ++
Sbjct: 540 NCISKIQIEDQGNCAISWIFASKYHLETIKCMK--GYEPHAISALYIANCSK--GEHKDR 595
Query: 156 SCSHGSVFRTWNFLHKRGSVTGGDYGDRTGCQPS-TISPCSHHGSAPTLPSCENQKVPKL 214
C GS FL + G P+ + ++ P E+ + L
Sbjct: 596 -CDEGS--NPLEFLQ---------IIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLL 643
Query: 215 KCHTRCTNPTYGRGFFQDKHRTTL---------TYWVDDNEDA----IKKEILAHGPTTA 261
H + N K +L + D DA IK EI+ G A
Sbjct: 644 D-HGKILN-------HNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIA 695
Query: 262 TFALYDDFYHYKSGVYKHTSNAKLENYL-------HSGKLIGWGT-----ENGTPYWLVI 309
Y V + N K L H+ ++G+G + YW+V
Sbjct: 696 --------YIKAENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVR 747
Query: 310 NTWGPHWGDRGTVKI-LRGKYECAFEYL 336
N+WG +WGD G K+ + G C ++
Sbjct: 748 NSWGKYWGDEGYFKVDMYGPSHCEDNFI 775
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 49.0 bits (117), Expect = 2e-06
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 233 KHRTTLTYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSG 292
K + + +V ED K+ I GP + + A+ DDF YK G++ + H+
Sbjct: 368 KEKYKIKSYVSIPEDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGEEPN---HAV 424
Query: 293 KLIGWGTENGTP----------YWLVINTWGPHWGDRGTVKI 324
L+G+G E Y+++ N+WG WG++G ++I
Sbjct: 425 ILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRI 466
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 33.2 bits (76), Expect = 0.25
Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 239 TYWVDDNEDAIKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSG--KLIG 296
Y V D I K D + SN E YL+SG +L
Sbjct: 599 RYVVLDIPRTIGKFYSDGAKFPWIPRSEDGYS-TGEYKGGLNSNDNSELYLNSGEVRLDE 657
Query: 297 WGTENGTPYWLVINTW------GPHWGDRGTVKILR 326
+ N + LVI ++ G G VKI
Sbjct: 658 FDGFNLSHLRLVIESYKPVYEGGGKVSAFGLVKIFE 693
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 32.5 bits (74), Expect = 0.26
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 249 IKKEILAHGPTTATFALYDDFYHYKSGVYKHTSNAKLENYLHSGKLIGW----------G 298
IK +G +++ Y D + + EN+ H+ ++G+
Sbjct: 227 IKAMFGFYGAVSSSM--YIDATNSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKY 284
Query: 299 TENGTPYWLVINTWGPHWGDRG 320
G +++ N+WG +WG+ G
Sbjct: 285 GPPGDGAFIIKNSWGTNWGENG 306
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose
2'-O-methyltransferase; Provisional.
Length = 287
Score = 31.0 bits (70), Expect = 0.81
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 103 VPDTGACAAPHIFAAVGAFSDRRC------IKSKGQQN--RPLSTE 140
VP G CAA +A G SDR C KSKG+++ + L E
Sbjct: 117 VPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAE 162
>gnl|CDD|182729 PRK10786, ribD, bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase; Provisional.
Length = 367
Score = 29.7 bits (67), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 190 TISPCSHHGSAPTLPSCE 207
T+ PCSHHG P P C+
Sbjct: 71 TLEPCSHHGRTP--PCCD 86
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
Length = 508
Score = 29.3 bits (66), Expect = 3.4
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 64 QSDRPLPGDRKTYDPEYSATVPDRFDAREQWPNCGTIGHVPDT 106
+SD+PLP + ARE W N G H D
Sbjct: 96 ESDKPLP--------------EEAALAREAWLNAGGEIHAADI 124
>gnl|CDD|110602 pfam01611, Filo_glycop, Filovirus glycoprotein. This family
includes an extracellular region from the envelope
glycoprotein of Ebola and Marburg viruses. This region
is also produced as a separate transcript that gives
rise to a non-structural, secreted glycoprotein, which
is produced in large amounts and has an unknown
function. Processing of this protein may be involved in
viral pathogenicity.
Length = 364
Score = 29.0 bits (65), Expect = 3.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 77 DPEYSATVPDRFDAREQWPNCGTIGHVPDTGACAAPHIFAAVGAF 121
P+ S +PD D +P C + V TG CA F GAF
Sbjct: 101 KPDGSECLPDPPDGIRDFPRCRYVHKVQGTGPCAGGIAFHKWGAF 145
>gnl|CDD|153238 cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase
(GATase1)-like domain found in proteins similar to
Saccharomyces cerevisiae biotin-apoprotein ligase
(ScBLP). Type 1 glutamine amidotransferase
(GATase1)-like domain found in proteins similar to
Saccharomyces cerevisiae biotin-apoprotein ligase
(ScBLP). Biotin-apoprotein ligase modifies proteins by
covalently attaching biotin. ScBLP is known to
biotinylate acety-CoA carboxylase and pyruvate
carboxylase. The catalytic triad typical of GATase1
domains is not conserved in this GATase1-like domain.
However, the Cys residue found in the sharp turn between
a beta strand and an alpha helix termed the nucleophile
elbow in a typical GATase1 domain is conserved.
Length = 114
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 249 IKKEILAHGPTTATFALY------DDFYHYKSGVYKHTSNAKLENYLHSG 292
+ + LA GP + AL D Y N ++ N++ +G
Sbjct: 31 VTADELAVGPWESKTALLVVPGGADLPYCRALN---GKGNRRIRNFVRNG 77
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.
Length = 445
Score = 28.4 bits (64), Expect = 5.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 18/46 (39%)
Query: 105 DTGACAAPHIFAAVGAFSDRRCIKSKGQQNRPLS------TEYVAS 144
D+G AA H+ AA+ G+Q+RPLS Y AS
Sbjct: 331 DSGMLAALHVLAAL------------GEQDRPLSELMADYQRYAAS 364
>gnl|CDD|234162 TIGR03299, LGT_TIGR03299, phage/plasmid-like protein TIGR03299.
Members of this uncharacterized protein family are found
in various Mycobacterium phage genomes, in Streptomyces
coelicolor plasmid SCP1, and in bacterial genomes near
various markers that suggest lateral gene transfer. The
function is unknown [Mobile and extrachromosomal element
functions, Other].
Length = 309
Score = 28.2 bits (63), Expect = 6.5
Identities = 10/36 (27%), Positives = 11/36 (30%)
Query: 89 DAREQWPNCGTIGHVPDTGACAAPHIFAAVGAFSDR 124
WP G I PD A + SDR
Sbjct: 41 PVLYVWPGDGLIRPHPDQKVLVRSDTGAPLSVVSDR 76
>gnl|CDD|226173 COG3647, COG3647, Predicted membrane protein [Function unknown].
Length = 205
Score = 27.9 bits (62), Expect = 6.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 1 MIHILVFLLGCTLVRGELYKFSDAYIDQINREANTWTA-GRN------------FPANLS 47
+ + L+FL + G Y F+ D IN W RN +PA ++
Sbjct: 60 LAYTLMFLWAILHMIGAQYTFAKVPFDWINFLVQEWLGLSRNPFDRVAHFFIGLYPAPVA 119
Query: 48 EEYLRQFL 55
E LR+++
Sbjct: 120 EWLLRRYV 127
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism].
Length = 146
Score = 27.2 bits (61), Expect = 9.1
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 190 TISPCSHHGSAPTLPSCE 207
T+ PCSH+G P P +
Sbjct: 74 TLEPCSHYGRTP--PCAD 89
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 27.7 bits (62), Expect = 9.8
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 164 RTWNFLHKRGSVTGGD----YGDRTGCQPSTISPCSHHGSAPTLPSCENQKVPKLKCHT 218
W L K G V G + +G + +G+A + + +KV K
Sbjct: 127 TAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLA 185
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.455
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,571,270
Number of extensions: 1617707
Number of successful extensions: 1155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 36
Length of query: 344
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 246
Effective length of database: 6,590,910
Effective search space: 1621363860
Effective search space used: 1621363860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)