BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15354
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PBN5|AUP1_DANRE Ancient ubiquitous protein 1 OS=Danio rerio GN=aup1 PE=2 SV=2
Length = 423
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 116/292 (39%), Gaps = 92/292 (31%)
Query: 9 GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
G + LG+ SR+ L + + P++LFPEE+TTNG+ GLLKF
Sbjct: 125 GFMELGQGVG-SRTELTETLHRYCSSPDTLPLLLFPEEDTTNGRTGLLKFSSWPFSVSDS 183
Query: 58 -----------------------------------------LPVMKRAQNETDEDLMSRI 76
LP + + ET ++ S++
Sbjct: 184 IQPVALLVKRPFIAVSTPESSWLTELLWTFFVPFTVYHVRWLPPLSKEDGETHQEFASKV 243
Query: 77 EACIACEGRLSPTLCTPSEKYELEKRLVRA---LATQNSGAR--------------RYDS 119
+ +A E + T T ++K E KR + A N GAR DS
Sbjct: 244 QGLLATELGVISTQITKADKAEHIKRKRHSAPQTAHSNLGARPRTVAQGFLGTSVGAEDS 303
Query: 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQ-- 177
R+ AQ+++E+ P++P++ I R+L +++ + TI+ L+ + FNS ++
Sbjct: 304 RIARLAQQVKEVLPDVPVSVITRDLLQTNC-VDTTITNLLERTD----QFNSEAAMTMPS 358
Query: 178 -------SPSPSS--------PSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
S +PS+ P+ F SP +R + E+K ARRR
Sbjct: 359 GPGKAAASSTPSAMVSSPNLKPAAKSFGRSPIDRHMSLQERKEALYEYARRR 410
>sp|B1H1N7|AUP1_XENLA Ancient ubiquitous protein 1 OS=Xenopus laevis GN=aup1 PE=2 SV=1
Length = 399
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 61/261 (23%)
Query: 9 GLINLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKF---------- 57
G + LG SR+ + LK +L + AP++LFPEE+TTNG+ GLL F
Sbjct: 125 GFLELGALG--SRTQLMESLKHYLSQPGGAPLLLFPEEDTTNGRTGLLHFSSWPFSLSDS 182
Query: 58 -----------------------------------------LPVMKRAQNETDEDLMSRI 76
LP + R E+DED R+
Sbjct: 183 VQPLSLTVQRPLIAVAVSGCSWVTELFWLLFIPFTVYQVRWLPSVCRLPRESDEDFACRV 242
Query: 77 EACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
+ ++ + T T +++ E KR R ++ AQ ++E+ P +P
Sbjct: 243 QQIVSLSLGVVATRHTAADRAEYVKR--RRCELPAPKSQPLSPTHIQMAQHVKEVLPQVP 300
Query: 137 LNAIVRELGRSHGNAELTISRLIAD--SSFQNLSFNSSSSFNQSPSPSSPSTPQ-FNASP 193
L+AI R+LG + G + TI+ + + + ++ S S S PQ F P
Sbjct: 301 LSAIHRDLGHT-GCVDTTITNFLEGRVTFVAEEEETTGAAEGTSKSRVSRPLPQGFAKKP 359
Query: 194 HNRMSAFAEKKAQFIAEARRR 214
+R + ++K Q + E RR
Sbjct: 360 EDRHLSLQDRK-QILYECARR 379
>sp|A9ULG4|AUP1_XENTR Ancient ubiquitous protein 1 OS=Xenopus tropicalis GN=aup1 PE=2
SV=1
Length = 403
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 60/263 (22%)
Query: 9 GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
G + LG SR+ + LK +L + P++LFPEEETT+G+ GLL F
Sbjct: 125 GFLELGALG--SRTQLMESLKHYLSQPGGGPLLLFPEEETTSGRTGLLHFSSWPFSLSDS 182
Query: 58 -----------------------------------------LPVMKRAQNETDEDLMSRI 76
LP + R E+DE+ R+
Sbjct: 183 VQPLTLTVQRPLVAAAVSGCSWVTELFWLLFIPFTVYQVRWLPPVTRHTRESDEEFAFRV 242
Query: 77 EACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
+ +A ++ T T +++ E KR L + AQ ++E+ P +P
Sbjct: 243 QQMMAGSLGVAATRHTGADRAEYLKRRRTELPRSAPRSVPLSPTQMQMAQHVKEVLPQVP 302
Query: 137 LNAIVRELGRSHGNAELTISRLI-ADSSF----QNLSFNSSSSFNQSPSPSSPSTPQFNA 191
L+AI R+LG + G + TI+ + +F + L N ++ S P F
Sbjct: 303 LSAIHRDLGHT-GCIDTTITNFLEGRVTFLPEEETLGGNEATERTPLDRISRPLPRGFAK 361
Query: 192 SPHNRMSAFAEKKAQFIAEARRR 214
SP R + E+K ARR+
Sbjct: 362 SPEVRHLSLQERKEALYECARRK 384
>sp|P70295|AUP1_MOUSE Ancient ubiquitous protein 1 OS=Mus musculus GN=Aup1 PE=2 SV=1
Length = 410
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
+++L ++R E E+ R++ +A E T TP++K E KR +R + Q
Sbjct: 223 VRWLHPIRRQLGEESEEFALRVQQLVAKELGQIGTRLTPADKAEHMKRQRHPRLRPQSVQ 282
Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQN 166
+S D ++ A R++E+ P++PLN I R+L R+ G +LTI+ L+ + +
Sbjct: 283 SSFPSPPSPSSDVQLTTLAHRVKEVLPHVPLNVIQRDLART-GCVDLTITNLL-EGAVAF 340
Query: 167 LSFNSSSSFNQSPSPSSP-------STPQ-----FNASPHNRMSAFAEKKAQFIAEARRR 214
+ + + P+PS+P +TPQ F S R + E+K ARRR
Sbjct: 341 MPEDVTEGSQSPPAPSAPKFPSSGLATPQPTALTFAKSSWARQESLQERKQALYEYARRR 400
>sp|A1L134|AUP1_RAT Ancient ubiquitous protein 1 OS=Rattus norvegicus GN=Aup1 PE=2 SV=1
Length = 410
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
+++L ++R E +E+ R++ +A E T TP++K E KR +R + Q
Sbjct: 223 VRWLHPIRRQLGEENEEFALRVQQLVAKELGQIGTRLTPADKAEHMKRQRHPRLRPQSVQ 282
Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI--ADSSF 164
+S D ++ AQR++E+ P++PLN I R+L R+ G +LTI+ L+ A +
Sbjct: 283 SSFPSPPSPSSDVQLTILAQRVKEVLPHVPLNVIQRDLART-GCVDLTITNLLEGAVAFM 341
Query: 165 QNLSFNSSSSFNQSPSPSSPS----TPQ-----FNASPHNRMSAFAEKKAQFIAEARRR 214
S S + +P PS TPQ F S R + E+K ARRR
Sbjct: 342 PEDVTEGSQSLPTASAPKFPSSGLVTPQPTALTFAKSSWARQESLQERKQALYEYARRR 400
>sp|Q9Y679|AUP1_HUMAN Ancient ubiquitous protein 1 OS=Homo sapiens GN=AUP1 PE=1 SV=1
Length = 476
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
+++L + R E +E+ R++ +A E + T TP++K E KR +R + Q
Sbjct: 289 VRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 348
Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS---- 162
+S D ++ AQR++E+ P++PL I R+L ++ G +LTI+ L+ +
Sbjct: 349 SSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKT-GCVDLTITNLLEGAVAFM 407
Query: 163 ------SFQNLSFNSSSSFNQSPSPSSPSTPQ-----FNASPHNRMSAFAEKKAQFIAEA 211
Q+L S+S F PS S P TPQ F S R + E+K A
Sbjct: 408 PEDITKGTQSLPTASASKF---PS-SGPVTPQPTALTFAKSSWARQESLQERKQALYEYA 463
Query: 212 RRR 214
RRR
Sbjct: 464 RRR 466
>sp|P34426|AUP1_CAEEL Ancient ubiquitous protein 1 homolog OS=Caenorhabditis elegans
GN=F44B9.5 PE=3 SV=2
Length = 390
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 CLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57
C G ++LG TR R +S+ K L R + P++ FPE T+G+K L+KF
Sbjct: 132 CFGYVDLG-ATR-GRDQLVSRAKQLLTREQMPLLAFPEGIITSGEKALIKF 180
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL-------VRAL 107
+++LP M+R +NE+ E+ +R+ +A +++ + S+ E KRL + +
Sbjct: 232 VEYLPKMERRENESLEEFTARVAETLAGNLKIAVSKFGISDATEAAKRLRTDRERAKKVV 291
Query: 108 ATQNSGARRYDSRMYAE-AQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQN 166
+ + R D R E A RI++ FP+ L+AI R+L ++ Q
Sbjct: 292 VREKTSPRLADPRQMDECAMRIKQSFPSFHLSAIRRDLEKTRS---------------QT 336
Query: 167 LSFNSSSSFNQSPSPSSPSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
+ N+ + S S S T + F +K Q I R++
Sbjct: 337 TTVNNLKAGKISSSASDGQTGKVTLDAGTWRGVFDNRKWQMIEVNRQK 384
>sp|A6SV24|MIAB_JANMA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Janthinobacterium sp. (strain Marseille) GN=miaB PE=3
SV=1
Length = 446
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 105 RALATQNSGARRYDSRMYAEA-QRIREIFPNIPLNA--IVRELGRSHGNAELTISRLIAD 161
R LA G Y S Y +R+RE+ PNI +++ IV G + + E + +LI D
Sbjct: 272 RILAAMKRG---YTSLEYKSILRRLREVRPNISISSDFIVGFPGETDADFE-AMMKLIND 327
Query: 162 SSFQNLSFNSSSSFNQSPSPSSPSTPQFNASPH 194
+ +++S SF SP P +P+ + +PH
Sbjct: 328 -----IGYDNSFSFIFSPRPGTPAANLEDDTPH 355
>sp|Q053V3|SYI_LEPBL Isoleucine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=ileS PE=3 SV=1
Length = 914
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 23 TFLSKLKSFLCRTEAPIVLFPEEE--TTNGKKG--LLKFLPVMKRAQNETDEDLMSRIEA 78
T L + LC API+ F EE T+NGKK L+ P +K +N++ ED + E+
Sbjct: 746 TALQYILDSLCILVAPILSFTAEEVWTSNGKKDSVFLQTFPDLKSWKNQSLED---KFES 802
Query: 79 CIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLN 138
+ + L ++ +L K L AL + + + E + + I
Sbjct: 803 ALQAREVVQKALEIARQEGKLGKSLEAALEIVSKSGLSFGELLPKETLELLFVVSQIHEE 862
Query: 139 AIVRELGRSHGNAELTISRL 158
E+ SH N + ++ L
Sbjct: 863 NPGMEVLSSHENEKFSVKVL 882
>sp|Q04QS6|SYI_LEPBJ Isoleucine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=ileS PE=3 SV=1
Length = 914
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 23 TFLSKLKSFLCRTEAPIVLFPEEE--TTNGKKG--LLKFLPVMKRAQNETDEDLMSRIEA 78
T L + LC API+ F EE T+NGKK L+ P +K +N++ ED + E+
Sbjct: 746 TALQYILDSLCILVAPILSFTAEEVWTSNGKKDSVFLQTFPDLKSWKNQSLED---KFES 802
Query: 79 CIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLN 138
+ + L ++ +L K L AL + + + E + + I
Sbjct: 803 ALQAREVVQKALEIARQEGKLGKSLEAALEIVSKSGLSFGELLPKETLELLFVVSQIHEE 862
Query: 139 AIVRELGRSHGNAELTISRL 158
E+ SH N + ++ L
Sbjct: 863 NPGMEVLSSHENEKFSVKVL 882
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,500,200
Number of Sequences: 539616
Number of extensions: 2961031
Number of successful extensions: 10714
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10617
Number of HSP's gapped (non-prelim): 99
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)