Query psy15354
Match_columns 218
No_of_seqs 208 out of 362
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 18:45:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02833 glycerol acyltransfer 99.4 1.6E-13 3.4E-18 127.9 6.6 87 11-100 213-353 (376)
2 cd07991 LPLAT_LPCAT1-like Lyso 99.4 1.1E-12 2.3E-17 111.7 7.6 84 11-97 73-211 (211)
3 KOG4666|consensus 99.1 8.2E-11 1.8E-15 108.0 5.2 88 9-102 54-197 (412)
4 PF02845 CUE: CUE domain; Int 99.0 7.2E-10 1.6E-14 72.9 4.7 40 122-161 2-41 (42)
5 PLN02499 glycerol-3-phosphate 99.0 1.5E-09 3.2E-14 104.5 7.8 74 23-99 341-469 (498)
6 smart00546 CUE Domain that may 99.0 1.3E-09 2.9E-14 71.8 5.3 42 121-162 2-43 (43)
7 PLN02588 glycerol-3-phosphate 98.9 3E-09 6.4E-14 102.7 7.3 79 11-98 375-513 (525)
8 PLN02177 glycerol-3-phosphate 98.8 9.5E-09 2E-13 99.1 7.6 70 27-99 358-482 (497)
9 KOG2898|consensus 98.8 6E-09 1.3E-13 96.7 4.7 76 20-96 194-324 (354)
10 PRK15018 1-acyl-sn-glycerol-3- 98.0 1.4E-05 3.1E-10 70.5 6.1 71 11-84 116-229 (245)
11 KOG2848|consensus 97.1 0.0013 2.8E-08 59.3 6.2 71 10-86 139-257 (276)
12 PLN02901 1-acyl-sn-glycerol-3- 96.9 0.0026 5.6E-08 54.5 6.6 43 11-57 100-142 (214)
13 PF01553 Acyltransferase: Acyl 96.4 0.0011 2.4E-08 50.8 0.6 36 20-57 76-111 (132)
14 PF11547 E3_UbLigase_EDD: E3 u 96.2 0.013 2.9E-07 40.3 5.1 40 122-161 10-49 (53)
15 cd07990 LPLAT_LCLAT1-like Lyso 96.1 0.0039 8.4E-08 52.1 2.7 39 11-51 80-119 (193)
16 cd07988 LPLAT_ABO13168-like Ly 96.1 0.011 2.4E-07 48.7 5.3 36 11-51 74-110 (163)
17 cd07993 LPLAT_DHAPAT-like Lyso 96.1 0.0075 1.6E-07 51.1 4.2 46 10-57 75-121 (205)
18 smart00563 PlsC Phosphate acyl 95.6 0.015 3.3E-07 43.0 3.8 43 11-57 53-95 (118)
19 cd07992 LPLAT_AAK14816-like Ly 95.3 0.032 6.9E-07 47.0 4.9 34 22-57 97-130 (203)
20 KOG2898|consensus 95.1 0.00056 1.2E-08 64.0 -6.6 89 71-162 213-310 (354)
21 PTZ00261 acyltransferase; Prov 95.0 0.032 7E-07 52.4 4.6 35 21-57 201-236 (355)
22 cd06551 LPLAT Lysophospholipid 94.8 0.12 2.6E-06 41.9 7.0 38 20-57 85-122 (187)
23 COG0204 PlsC 1-acyl-sn-glycero 94.4 0.046 9.9E-07 46.2 3.8 35 23-57 125-159 (255)
24 TIGR00530 AGP_acyltrn 1-acyl-s 94.0 0.064 1.4E-06 40.8 3.5 43 11-57 67-109 (130)
25 PLN02380 1-acyl-sn-glycerol-3- 93.5 0.059 1.3E-06 50.8 3.0 43 6-51 133-179 (376)
26 PRK08043 bifunctional acyl-[ac 93.3 0.18 4E-06 49.8 6.3 32 24-57 86-117 (718)
27 PRK08633 2-acyl-glycerophospho 92.5 0.33 7.1E-06 49.8 6.9 36 20-57 496-531 (1146)
28 PLN02510 probable 1-acyl-sn-gl 92.4 0.15 3.2E-06 48.1 4.0 65 6-93 141-208 (374)
29 cd07986 LPLAT_ACT14924-like Ly 92.3 0.22 4.7E-06 42.4 4.5 35 22-57 85-124 (210)
30 KOG1505|consensus 91.8 0.15 3.2E-06 47.7 3.2 38 6-46 120-161 (346)
31 KOG4666|consensus 90.5 0.078 1.7E-06 49.7 -0.0 64 38-102 264-379 (412)
32 PF00627 UBA: UBA/TS-N domain; 90.2 1 2.2E-05 28.3 5.0 35 122-158 3-37 (37)
33 PRK14014 putative acyltransfer 89.2 0.42 9.2E-06 43.5 3.7 12 37-48 175-186 (301)
34 KOG3037|consensus 82.2 1.1 2.5E-05 41.6 2.8 46 38-83 63-122 (330)
35 smart00165 UBA Ubiquitin assoc 80.7 5.1 0.00011 24.7 4.6 35 123-159 3-37 (37)
36 cd07989 LPLAT_AGPAT-like Lysop 80.4 2.4 5.2E-05 34.2 3.9 35 21-57 83-117 (184)
37 PRK06814 acylglycerophosphoeth 80.2 1.1 2.4E-05 46.4 2.3 32 24-57 512-543 (1140)
38 cd00194 UBA Ubiquitin Associat 79.9 6.4 0.00014 24.3 4.9 36 123-160 3-38 (38)
39 cd07987 LPLAT_MGAT-like Lysoph 79.3 1.2 2.7E-05 37.4 1.9 25 20-49 78-102 (212)
40 cd07984 LPLAT_LABLAT-like Lyso 74.9 6 0.00013 32.1 4.8 34 23-57 78-111 (192)
41 cd07983 LPLAT_DUF374-like Lyso 74.7 3.5 7.7E-05 33.8 3.4 65 6-93 68-134 (189)
42 KOG4588|consensus 68.8 4.9 0.00011 36.2 3.0 42 121-162 21-63 (267)
43 PRK03355 glycerol-3-phosphate 66.8 5.8 0.00013 41.1 3.5 43 11-57 321-366 (783)
44 KOG0943|consensus 59.9 12 0.00027 41.2 4.4 41 122-162 190-230 (3015)
45 PLN02783 diacylglycerol O-acyl 56.8 11 0.00023 34.7 3.1 23 20-47 159-181 (315)
46 TIGR03703 plsB glycerol-3-phos 56.1 13 0.00029 38.6 3.9 44 10-57 345-391 (799)
47 cd07985 LPLAT_GPAT Lysophospho 55.2 10 0.00022 33.9 2.6 25 24-48 103-127 (235)
48 PF04683 Proteasom_Rpn13: Prot 46.7 10 0.00022 28.5 1.1 20 38-57 45-71 (85)
49 PRK04974 glycerol-3-phosphate 44.4 26 0.00057 36.6 3.9 44 10-57 355-401 (818)
50 PF03474 DMA: DMRTA motif; In 42.5 70 0.0015 21.0 4.3 35 125-159 5-39 (39)
51 KOG4588|consensus 40.9 19 0.00041 32.5 2.0 30 131-160 1-30 (267)
52 smart00545 JmjN Small domain f 39.1 19 0.0004 23.9 1.3 28 59-87 3-32 (42)
53 PRK07483 hypothetical protein; 38.3 40 0.00087 32.1 3.9 58 24-84 381-439 (443)
54 cd02189 delta_tubulin The tubu 36.3 33 0.00071 33.0 3.0 31 3-36 94-124 (446)
55 PF11633 SUD-M: Single-strande 36.0 29 0.00064 28.8 2.3 39 4-51 68-106 (142)
56 PF10730 DUF2521: Protein of u 35.7 85 0.0018 26.3 4.9 41 121-162 28-69 (147)
57 smart00351 PAX Paired Box doma 35.3 2.2E+02 0.0048 22.3 8.5 77 77-159 36-124 (125)
58 PTZ00387 epsilon tubulin; Prov 32.5 39 0.00085 32.9 2.9 31 3-36 99-129 (465)
59 TIGR00601 rad23 UV excision re 32.5 1E+02 0.0023 29.3 5.7 45 117-163 152-196 (378)
60 COG0621 MiaB 2-methylthioadeni 32.3 2.3E+02 0.0049 27.6 8.0 87 117-216 278-377 (437)
61 PF08938 HBS1_N: HBS1 N-termin 29.6 18 0.0004 26.5 0.1 45 118-162 25-71 (79)
62 PTZ00335 tubulin alpha chain; 29.0 44 0.00095 32.3 2.6 31 3-36 100-130 (448)
63 cd02190 epsilon_tubulin The tu 28.0 55 0.0012 30.8 3.0 31 3-36 67-97 (379)
64 cd02186 alpha_tubulin The tubu 27.4 45 0.00096 32.0 2.3 31 3-36 99-129 (434)
65 PF06972 DUF1296: Protein of u 27.3 2.3E+02 0.0049 20.4 5.3 45 120-164 4-48 (60)
66 TIGR02320 PEP_mutase phosphoen 27.0 4.8E+02 0.01 23.7 10.2 124 6-137 51-214 (285)
67 PLN00220 tubulin beta chain; P 26.7 56 0.0012 31.4 2.8 31 3-36 98-128 (447)
68 PF08220 HTH_DeoR: DeoR-like h 26.3 72 0.0016 21.7 2.6 20 126-146 18-37 (57)
69 PF03800 Nuf2: Nuf2 family; I 25.3 39 0.00085 27.1 1.3 35 124-160 1-35 (146)
70 PTZ00374 dihydroxyacetone phos 24.9 73 0.0016 34.5 3.4 35 10-47 683-720 (1108)
71 KOG4501|consensus 24.7 1.1E+02 0.0023 31.2 4.3 42 120-162 431-472 (707)
72 PF00319 SRF-TF: SRF-type tran 23.9 1.5E+02 0.0033 20.2 3.8 24 190-213 3-26 (51)
73 PLN00221 tubulin alpha chain; 23.9 58 0.0013 31.5 2.4 31 3-36 100-130 (450)
74 KOG0010|consensus 23.3 1.9E+02 0.0041 28.8 5.7 45 116-161 449-493 (493)
75 KOG2847|consensus 21.7 44 0.00096 30.6 1.0 32 25-57 140-171 (286)
76 PF06072 Herpes_US9: Alphaherp 21.5 74 0.0016 22.8 1.9 18 61-78 3-20 (60)
77 PF08804 gp32: gp32 DNA bindin 21.5 25 0.00055 27.3 -0.5 12 48-60 13-24 (94)
78 cd06059 Tubulin The tubulin su 20.5 87 0.0019 29.2 2.8 31 3-36 57-87 (382)
79 PF14555 UBA_4: UBA-like domai 20.3 2.5E+02 0.0053 17.9 4.3 39 123-162 2-40 (43)
No 1
>PLN02833 glycerol acyltransferase family protein
Probab=99.43 E-value=1.6e-13 Score=127.94 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=77.3
Q ss_pred eecCCCCcccHHHHHHHHHHHhccC-CCCeEeccCcccccCccccccc--------------------------------
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRT-EAPIVLFPEEETTNGKKGLLKF-------------------------------- 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~-~~PlliFPEGt~TNg~~~Ll~F-------------------------------- 57 (218)
+|++... +++.+.+.+++++... +.||+||||||||||. .+++|
T Consensus 213 VdR~~~~--~~~~~~~~l~~~l~~~~G~~llIFPEGTrs~~~-~l~~FK~Gaf~~g~pI~PVaI~y~~~~~~~fW~s~~~ 289 (376)
T PLN02833 213 FNRTEAK--DREVVAKKLRDHVQDPDRNPLLIFPEGTCVNNE-YTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSRKQ 289 (376)
T ss_pred ecCCCHH--HHHHHHHHHHHHHHhcCCCEEEEEcCccccCCC-cccccchhhHhcCCeEEEEEEEecCcccccccCCCCc
Confidence 7887655 8888999999998864 5899999999999999 89999
Q ss_pred ---------------------cccccCCCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHH
Q psy15354 58 ---------------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELE 100 (218)
Q Consensus 58 ---------------------LP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~ 100 (218)
|||+.+.++|++.+||++|+..||++||+++++|+..-|....
T Consensus 290 s~~~~l~~ll~~~~~~v~V~~LpPi~~~~~e~~~efA~rv~~~Ia~~lgi~~~~wdg~lk~~~~ 353 (376)
T PLN02833 290 SFTMHLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKKVPWDGYLKYYRP 353 (376)
T ss_pred cHHHhHHHHhCCCceEEEEEECCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCceeecCC
Confidence 7888877889999999999999999999999999998776554
No 2
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=99.38 E-value=1.1e-12 Score=111.67 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=73.8
Q ss_pred eecCCCCcccHHHHHHHHHHHhccC-CCCeEeccCcccccCccccccc--------------------------------
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRT-EAPIVLFPEEETTNGKKGLLKF-------------------------------- 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~-~~PlliFPEGt~TNg~~~Ll~F-------------------------------- 57 (218)
+|++... ++.++++.+.+.+... +.+|+||||||++||. .|++|
T Consensus 73 v~R~~~~--~~~~~~~~~~~~~~~~~g~~v~iFPEGtrs~~~-~l~~Fk~gaf~~~~pI~Pv~i~~~~~~~~~~~~~~~~ 149 (211)
T cd07991 73 VDRSEPK--DRKKVVEEIKERATDPNWPPILIFPEGTTTNGK-ALIMFKKGAFEPGVPVQPVAIRYPNKFVDAFWNSSGY 149 (211)
T ss_pred EeCCCch--hHHHHHHHHHHHHhCCCCCeEEEecCccccCCC-EEEeeccccccCCCeeEEEEEEecCccCCcccCCCCc
Confidence 6777654 6688889999998874 5899999999999999 89999
Q ss_pred ---------------------cccccC-CCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHH
Q psy15354 58 ---------------------LPVMKR-AQNETDEDLMSRIEACIACEGRLSPTLCTPSEKY 97 (218)
Q Consensus 58 ---------------------LP~~~~-~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~ 97 (218)
|||+.+ .++++.++|+++|++.|++.||++.|+||.+||.
T Consensus 150 ~~~~~l~~~l~~~~~~v~v~~l~pi~~~~~~~~~~~l~~~v~~~i~~~l~~~~~~~~~~~~~ 211 (211)
T cd07991 150 SSLMYLFRLLTQPANVLEVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211 (211)
T ss_pred cHHHHHHHHhCCcceEEEEEECCCcccccCCCCHHHHHHHHHHHHHHhcCCCccCCCCcccC
Confidence 677777 5678999999999999999999999999999983
No 3
>KOG4666|consensus
Probab=99.10 E-value=8.2e-11 Score=108.02 Aligned_cols=88 Identities=11% Similarity=-0.087 Sum_probs=75.5
Q ss_pred cceecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcccccCccccccc-----------------------------
Q psy15354 9 GLINLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEETTNGKKGLLKF----------------------------- 57 (218)
Q Consensus 9 g~~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt~TNg~~~Ll~F----------------------------- 57 (218)
|++-+-.+. ||+..++.|+....+.. +.|||||||+|| ||+.|
T Consensus 54 ~l~~~~~~d--s~k~tV~~i~~~~~~~~~~~qIll~~~~~C~----~~~~Fk~~~~~P~~~~q~~~l~y~n~~~~~t~Wq 127 (412)
T KOG4666|consen 54 GLGPFPMTE--NIKLAVALVTLVPLRFLLSMSILLLYYLICR----VFTLFSAPYRGPEEEEDEGGVVFQEDYAHMEGWK 127 (412)
T ss_pred eeccCCChH--HHHHHHHHHHHhhhccCCCceeeeeeccceE----EEEEecCCccCCCCCcCcceEeccccccceeccc
Confidence 445555555 99999999998877776 469999999999 89999
Q ss_pred -----------------------cccccCCCCC--CHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHHHH
Q psy15354 58 -----------------------LPVMKRAQNE--TDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKR 102 (218)
Q Consensus 58 -----------------------LP~~~~~~~E--~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~kr 102 (218)
+|+++|+++| |+..||..|+..||++||+++|++|++|...+...
T Consensus 128 ~~~~v~~~~~~~~~l~~~~~~~~i~~~~P~~ee~~d~~~~at~v~~~maealg~~vtd~t~edc~l~vs~ 197 (412)
T KOG4666|consen 128 RTVIVRSGRFLSRVLLFVFGFYWIHESCPDRDSDMDSNPKTTSTEINMAEALGTEVTDRTGEDCSLHVSY 197 (412)
T ss_pred cchHHHHHHHHHHHHHhheeEEEEeccCCChhhhcCCcccchhHHHHHHHhhCCCCCCCchHHHHHHHhh
Confidence 9999998766 67899999999999999999999999998776443
No 4
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.98 E-value=7.2e-10 Score=72.88 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
+.+++++++|||+++...|.++|..++|+|+.||+.||+|
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5789999999999999999999999899999999999986
No 5
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=98.96 E-value=1.5e-09 Score=104.53 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------------------
Q psy15354 23 TFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF--------------------------------------------- 57 (218)
Q Consensus 23 ~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F--------------------------------------------- 57 (218)
.-.+.+++.+++.+ |+||||||+++.- .|++|
T Consensus 341 ~d~~air~lL~~G~--lvIFPEGTrsreg-~LlrFk~l~aela~pVVPVAI~~~~~~f~gtta~g~k~~Dp~~f~mnP~p 417 (498)
T PLN02499 341 VDAEKIKRELARGD--LVVCPEGTTCREP-FLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRP 417 (498)
T ss_pred hHHHHHHHHhhCCC--EEEcCCCCCCCCC-cccccchhhhhhcCceEeEEEEeccceEEEEcCCCCchhhhhhheecCCc
Confidence 34477888888777 9999999999998 89999
Q ss_pred ------cccccCC----CCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHH
Q psy15354 58 ------LPVMKRA----QNETDEDLMSRIEACIACEGRLSPTLCTPSEKYEL 99 (218)
Q Consensus 58 ------LP~~~~~----~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~ 99 (218)
||++..+ .++++.+||++||+.||++||...|.+|-+||...
T Consensus 418 ~y~v~fL~~~~~~~t~~~g~s~~evan~vQ~~la~~LgfecT~lTrkdKy~~ 469 (498)
T PLN02499 418 VYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRV 469 (498)
T ss_pred eEEEEEcCCCChhhccCCCCChHHHHHHHHHHHHHHhCCccccccHHHHHHH
Confidence 8888776 58999999999999999999999999999999653
No 6
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.96 E-value=1.3e-09 Score=71.80 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
...+++++++|||+++...|.++|+.++|+|+.||++||+|.
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~~ 43 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEGS 43 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 467999999999999999999999988999999999999873
No 7
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=98.90 E-value=3e-09 Score=102.65 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=62.4
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF--------------------------------- 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F--------------------------------- 57 (218)
++++... +++++ ++.++..+ ++||||||++++- .|++|
T Consensus 375 VdRdr~~--D~~aI----~~LLk~Gd--lVIFPEGTRsr~g-~LlrFk~l~A~la~~IVPVAI~~~~~~f~gtt~~g~k~ 445 (525)
T PLN02588 375 LTRDRVK--DGQAM----EKLLSQGD--LVVCPEGTTCREP-YLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKA 445 (525)
T ss_pred ecCCCcc--hHHHH----HHHHhCCC--EEEccCccccCCC-cccChhhhHHHhcCceeeEEEEEeccccceeecCCCcc
Confidence 6666432 44333 44433444 8999999999998 89999
Q ss_pred ------------------cccccC------CC---CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHH
Q psy15354 58 ------------------LPVMKR------AQ---NETDEDLMSRIEACIACEGRLSPTLCTPSEKYE 98 (218)
Q Consensus 58 ------------------LP~~~~------~~---~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e 98 (218)
||+++. +. ++++.+||++||..||++||+.+|.+|.+||..
T Consensus 446 ~D~~~fl~nP~p~y~V~fL~~v~~~~e~~~~~p~~g~s~~evAn~VQ~~iA~~LG~e~T~~Tr~dkY~ 513 (525)
T PLN02588 446 FDPIFFLLNPFPSYTVQLLDPVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTNLTRRDKYL 513 (525)
T ss_pred cceeEEEecCCceEEEEEcCcCCchhhhcccCcccCCChHHHHHHHHHHHHHhhCceecccchhhhhh
Confidence 888875 21 588899999999999999999999999999954
No 8
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.81 E-value=9.5e-09 Score=99.14 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=60.8
Q ss_pred HHHHHhccCCCCeEeccCcccccCccccccc-------------------------------------------------
Q psy15354 27 KLKSFLCRTEAPIVLFPEEETTNGKKGLLKF------------------------------------------------- 57 (218)
Q Consensus 27 ~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F------------------------------------------------- 57 (218)
.+++.++.. .++||||||.+++. .|+.|
T Consensus 358 ~~~~lL~~g--~lvIFPEGTrs~~~-~l~~Fk~~fa~l~~pIVPVAI~~~~~~f~~~t~~~~~~~d~~~~~~~p~~~y~V 434 (497)
T PLN02177 358 NIKRLLEEG--DLVICPEGTTCREP-FLLRFSALFAELTDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEI 434 (497)
T ss_pred HHHHHHhcC--CEEECcCcCCCCCC-CcchHHHHHHHHCCcEEEEEEEcccccccccccccceecchhhhhcCCCceEEE
Confidence 456665553 69999999999887 89999
Q ss_pred --cccccCCC----CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHH
Q psy15354 58 --LPVMKRAQ----NETDEDLMSRIEACIACEGRLSPTLCTPSEKYEL 99 (218)
Q Consensus 58 --LP~~~~~~----~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~ 99 (218)
||++.+.+ +++..++|++||+.||++||...|.+|.+||...
T Consensus 435 ~fL~~l~~~~~~~~~~~~~evAn~Vq~~i~~~lg~~~t~~tr~dk~~~ 482 (497)
T PLN02177 435 TFLNQLPKELTCKGGKSPIEVANYIQRVLAGTLGFECTNLTRKDKYAI 482 (497)
T ss_pred EECCCCChhhcccCCCCHHHHHHHHHHHHHHhhCceeccccHHHHHHH
Confidence 88988874 7899999999999999999999999999999653
No 9
>KOG2898|consensus
Probab=98.77 E-value=6e-09 Score=96.72 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHhccCC-CCeEeccCcccccCccccccc-----------------------------------------
Q psy15354 20 SRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKF----------------------------------------- 57 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~~~Ll~F----------------------------------------- 57 (218)
+|+-..+..++++...+ .|+++||||||+||+ ++++|
T Consensus 194 d~~~~~~~~~e~~~~~~~~~ii~fpegtCinn~-~~~~fk~k~~~e~~~~i~pvaik~~~~~~~~f~~s~~~s~~~~l~~ 272 (354)
T KOG2898|consen 194 DRQVVAKRLAEHVWNERKEPILLFPEGTCINNT-KVMQFKLKGSFEEGVKIYPVAIKYDPRFGDAFWNSPELSFTRYLLE 272 (354)
T ss_pred hhHhhhhhhhHHHhcCCCCcEEEeecceeeCCc-eeEEEecCCChhhcceeeeeeeecCccccccccCCccccHHHHHHH
Confidence 88889999999999998 899999999999999 99999
Q ss_pred -------------cccccCCCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHH
Q psy15354 58 -------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEK 96 (218)
Q Consensus 58 -------------LP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk 96 (218)
||++.+..+|+..+||++|..+||...|++...|++.-|
T Consensus 273 ~~ts~~~v~~i~~l~~~~r~~~et~t~~a~~v~~~ig~~~gl~~~~~dg~lk 324 (354)
T KOG2898|consen 273 LMTSWAIVCDIWYLPPMRRDNDETATQFANRVKSLIGKSAGLKDLEWDGLLK 324 (354)
T ss_pred HHhhhheeeeeeecccEEeecccchhHHHHHHHHHHHHhhCCcccCcCCcee
Confidence 999999999999999999999999999999999999987
No 10
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=97.97 E-value=1.4e-05 Score=70.46 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=53.1
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF--------------------------------- 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F--------------------------------- 57 (218)
+||+... +..+.++...+.+.+.+..|+||||||.+.+. .+..|
T Consensus 116 VdR~~~~--~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g-~l~~Fk~Ga~~lA~~~~~PIvPv~i~g~~~~~~~~~~~ 192 (245)
T PRK15018 116 IDRNNRT--KAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR-GLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLH 192 (245)
T ss_pred EeCCCHH--HHHHHHHHHHHHHHhCCCEEEEECCccCCCCC-CCCCccHHHHHHHHHcCCCEEEEEEECcccccccCCcc
Confidence 7777432 33345566666666667889999999999988 79999
Q ss_pred --------cccccCCC--CCCHHHHHHHHHHHHHHhC
Q psy15354 58 --------LPVMKRAQ--NETDEDLMSRIEACIACEG 84 (218)
Q Consensus 58 --------LP~~~~~~--~E~~~~FA~rV~~~iA~~L 84 (218)
+||+.+++ .++.++++++|+..|++.+
T Consensus 193 ~g~i~v~~~~PI~~~~~~~~~~~~l~~~v~~~i~~~~ 229 (245)
T PRK15018 193 NGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKI 229 (245)
T ss_pred CeeEEEEEcCCCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence 67777653 2556799999999999865
No 11
>KOG2848|consensus
Probab=97.06 E-value=0.0013 Score=59.33 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=53.0
Q ss_pred ceecCCCCcccHHHHHHHH---HHHhccCCCCeEeccCcccccCccccccc-----------------------------
Q psy15354 10 LINLGRNTRFSRSTFLSKL---KSFLCRTEAPIVLFPEEETTNGKKGLLKF----------------------------- 57 (218)
Q Consensus 10 ~~~~g~~~~~sR~~~~~~i---k~~~~~~~~PlliFPEGt~TNg~~~Ll~F----------------------------- 57 (218)
|+||- +|+.+++-+ -+...+.+.-|-+|||||=++.- +|+.|
T Consensus 139 fIdR~-----r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTRn~~g-~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~ 212 (276)
T KOG2848|consen 139 FIDRS-----RREKAIDTLDKCAERMKKENRKVWVFPEGTRNKEG-RLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYST 212 (276)
T ss_pred EEecC-----CHHHHHHHHHHHHHHHHhCCeeEEEccCCccCCCC-cccccccceeeeehhcCCCEEEEEEecccccccC
Confidence 47776 555555555 45555666789999999996666 89999
Q ss_pred --------------cccccCCC--CCCHHHHHHHHHHHHHHhCCC
Q psy15354 58 --------------LPVMKRAQ--NETDEDLMSRIEACIACEGRL 86 (218)
Q Consensus 58 --------------LP~~~~~~--~E~~~~FA~rV~~~iA~~Lgi 86 (218)
||+++-+. -+|-.+++++||..|++.+..
T Consensus 213 ~~k~f~sG~v~V~vL~pI~TeglT~ddv~~L~~~~R~~M~~~~~e 257 (276)
T KOG2848|consen 213 KEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDECRSAMLETFKE 257 (276)
T ss_pred ccceeecceEEEEEcCCCCccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 88877541 245579999999999998753
No 12
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=96.91 E-value=0.0026 Score=54.49 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.2
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
+|++... +..+.++.+.+.+.+ +..|+||||||.+++. .+..|
T Consensus 100 v~R~~~~--~~~~~~~~~~~~l~~-g~~v~IfPEGtr~~~~-~~~~f 142 (214)
T PLN02901 100 LKRMDRR--SQLECLKRCMELLKK-GASVFFFPEGTRSKDG-KLAAF 142 (214)
T ss_pred EecCCcH--HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCCC-cccCc
Confidence 6776433 444556666666653 4689999999977665 57777
No 13
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=96.38 E-value=0.0011 Score=50.76 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
++..+++.+++.+..... |+|||||++++.. .++.|
T Consensus 76 ~~~~~~~~~~~~l~~~~~-i~ifPEG~~~~~~-~~~~~ 111 (132)
T PF01553_consen 76 KNRKALKDIKEILRKGGS-IVIFPEGTRSRSG-ELLPF 111 (132)
T ss_dssp HHHHHHHHHHHHHHC----EEE-TT-S---B---B---
T ss_pred ccchhHHHHHHHhhhcce-eeecCCccCcCCC-ccCCc
Confidence 567777888887666555 9999999999997 55544
No 14
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=96.22 E-value=0.013 Score=40.33 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
+.++.|++.+++.-+++.|++.|+++.=+|...++|||+.
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 5689999999999999999999999778999999999973
No 15
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=96.13 E-value=0.0039 Score=52.14 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=28.7
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCc
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGK 51 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~ 51 (218)
++++... +++.+.+.++......+ ..|+||||||..+..
T Consensus 80 v~R~~~~--d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~~~ 119 (193)
T cd07990 80 LKRKWEK--DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEE 119 (193)
T ss_pred EECChHH--hHHHHHHHHHHHhcCCCCcEEEEeCcccCCCHH
Confidence 7887654 77766666666655544 689999999988776
No 16
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=96.11 E-value=0.011 Score=48.71 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=24.7
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCc
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGK 51 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~ 51 (218)
+|++. ....++.+.+.+...+ ..|+||||||.+...
T Consensus 74 V~r~~-----~~~~~~~~~~~l~~g~~~~l~IFPEGtR~~~~ 110 (163)
T cd07988 74 VDRSR-----AGGLVEQVVEEFRRREEFVLAIAPEGTRSKVD 110 (163)
T ss_pred eEcCC-----cccHHHHHHHHHHhCCCcEEEEeCCCCCCCCc
Confidence 56653 2345666666666544 689999999988853
No 17
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=96.07 E-value=0.0075 Score=51.13 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred ceecCCCC-cccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 10 LINLGRNT-RFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 10 ~~~~g~~~-~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
+++|+... ...++.+.+.+++.+.. +..|+||||||.|.+. .+++|
T Consensus 75 ~I~R~~~~~~~~~~~~~~~~~~~l~~-g~~l~iFPEGtrs~~g-~~~~~ 121 (205)
T cd07993 75 FIRRSFGKDPLYRAVLQEYVQELLKN-GQPLEFFIEGTRSRTG-KLLPP 121 (205)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHhC-CceEEEEcCCCCCCCC-Cccch
Confidence 48887542 00133444556666554 6899999999998877 57766
No 18
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=95.62 E-value=0.015 Score=42.95 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.6
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
++++... +..+.++++.+.+. .+.+|++||||+++++. .+++|
T Consensus 53 v~~~~~~--~~~~~~~~~~~~l~-~~~~~~ifPeG~~~~~~-~~~~~ 95 (118)
T smart00563 53 IDRENGR--LARAALREAVRLLR-DGGWLLIFPEGTRSRPG-KLLPF 95 (118)
T ss_pred EeCCCcH--HHHHHHHHHHHHHh-CCCEEEEeCCcccCCCC-CcCCC
Confidence 4554322 33444444444433 35789999999999998 77766
No 19
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=95.26 E-value=0.032 Score=46.98 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 22 STFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 22 ~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
..+++.+.+.+.+ +.+|+||||||.+.+. .+.+|
T Consensus 97 ~~~~~~~~~~l~~-G~~l~IFPEGtr~~~~-~~~~f 130 (203)
T cd07992 97 AAVFDAVGEALKA-GGAIGIFPEGGSHDRP-RLLPL 130 (203)
T ss_pred HHHHHHHHHHHhC-CCEEEEeCCCCCCCCC-CccCc
Confidence 5667778888764 5689999999988765 56666
No 20
>KOG2898|consensus
Probab=95.14 E-value=0.00056 Score=63.98 Aligned_cols=89 Identities=9% Similarity=-0.044 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCccCCC-HHHHHHHHHHHHHHHhhc--------CCCCCCCchHHHHHHHHHHHhCCCCCHHHHH
Q psy15354 71 DLMSRIEACIACEGRLSPTLCT-PSEKYELEKRLVRALATQ--------NSGARRYDSRMYAEAQRIREIFPNIPLNAIV 141 (218)
Q Consensus 71 ~FA~rV~~~iA~~Lgi~~t~~t-~~dk~e~~kr~~~~~~~~--------~~~~~~~~~~~~~m~~~V~~~fP~v~~~~I~ 141 (218)
.|..+++...++...+ ..++ ..++.+..+++...+..+ +++..+...++..|+..+..++|.+....|+
T Consensus 213 ~ii~fpegtCinn~~~--~~fk~k~~~e~~~~i~pvaik~~~~~~~~f~~s~~~s~~~~l~~~~ts~~~v~~i~~l~~~~ 290 (354)
T KOG2898|consen 213 PILLFPEGTCINNTKV--MQFKLKGSFEEGVKIYPVAIKYDPRFGDAFWNSPELSFTRYLLELMTSWAIVCDIWYLPPMR 290 (354)
T ss_pred cEEEeecceeeCCcee--EEEecCCChhhcceeeeeeeecCccccccccCCccccHHHHHHHHHhhhheeeeeeecccEE
Confidence 3333333333333333 3344 778888888776665432 2455688899999999999999999999999
Q ss_pred HHHhhccCCHHHHHHHHhcCC
Q psy15354 142 RELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 142 ~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+|+.. |+...+++-+.+.|+
T Consensus 291 r~~~e-t~t~~a~~v~~~ig~ 310 (354)
T KOG2898|consen 291 RDNDE-TATQFANRVKSLIGK 310 (354)
T ss_pred eeccc-chhHHHHHHHHHHHH
Confidence 99999 999999999999997
No 21
>PTZ00261 acyltransferase; Provisional
Probab=95.00 E-value=0.032 Score=52.36 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhccCCCCeEeccCccccc-Cccccccc
Q psy15354 21 RSTFLSKLKSFLCRTEAPIVLFPEEETTN-GKKGLLKF 57 (218)
Q Consensus 21 R~~~~~~ik~~~~~~~~PlliFPEGt~TN-g~~~Ll~F 57 (218)
++.+.+.+++.+.+ +..|+||||||-+- |. .|..|
T Consensus 201 ~~~v~~~~~e~Lk~-G~sLvIFPEGTRS~~gg-~L~pF 236 (355)
T PTZ00261 201 QAQVQQAIDAHLRL-GGSLAFFPEGAINKHPQ-VLQTF 236 (355)
T ss_pred HHHHHHHHHHHHHC-CCEEEEECCcCCcCCCC-cCCCC
Confidence 33445555555554 46999999999866 44 58888
No 22
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=94.82 E-value=0.12 Score=41.90 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
+....++.+.+.+.+.+.+|+|||||+++++...+.+|
T Consensus 85 ~~~~~~~~~~~~l~~~g~~v~ifPeG~~~~~~~~~~~~ 122 (187)
T cd06551 85 SAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQF 122 (187)
T ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCcccCCCCCCcccc
Confidence 35677888888877656899999999988765345556
No 23
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=94.44 E-value=0.046 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 23 TFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 23 ~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
.++......+...+..|+||||||.+++...+.+|
T Consensus 125 ~~~~~~~~~~~~~g~~l~iFPEGtr~~~~~~~~~~ 159 (255)
T COG0204 125 ETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPF 159 (255)
T ss_pred HHHHHHHHHHHhCCcEEEECCCcCcCCCccccCCC
Confidence 44444445545557789999999999963146655
No 24
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=93.98 E-value=0.064 Score=40.79 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=28.7
Q ss_pred eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
++++... +...+++.+.+.+.+. .+|+|||||++.+.. .+++|
T Consensus 67 i~r~~~~--~~~~~~~~~~~~l~~g-~~v~ifPeG~~~~~~-~~~~f 109 (130)
T TIGR00530 67 IDRENIR--AIATALKAAIEVLKQG-RSIGVFPEGTRSRGR-DILPF 109 (130)
T ss_pred ecCCChH--HHHHHHHHHHHHHhCC-CEEEEeCCCCCCCCC-CCCCc
Confidence 4554322 4556677777776544 589999999998776 55544
No 25
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=93.51 E-value=0.059 Score=50.84 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=28.1
Q ss_pred ccccc--eecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcccccCc
Q psy15354 6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEETTNGK 51 (218)
Q Consensus 6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt~TNg~ 51 (218)
|..|| +||+... +++ .+++..+.+.+.. ..|+||||||-....
T Consensus 133 ~~~~~IfIdR~~~~--d~~-~l~~~~~~l~~~~~~~wllIFPEGTR~~~~ 179 (376)
T PLN02380 133 WFSEYVFLERSWAK--DEN-TLKSGFQRLKDFPRPFWLALFVEGTRFTQA 179 (376)
T ss_pred HHcCCEEecCCchh--HHH-HHHHHHHHHhhCCCccEEEEecCcCCCCch
Confidence 45565 7887654 544 4444445555443 469999999988777
No 26
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=93.34 E-value=0.18 Score=49.80 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=22.6
Q ss_pred HHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 24 FLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 24 ~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
.++.+.+.+. .+.+|+||||||.+.+. .+.+|
T Consensus 86 ~~~~~~~~l~-~g~~~~iFPEGtr~~~~-~~~~~ 117 (718)
T PRK08043 86 AIKHLVRLVE-QGRPVVIFPEGRITVTG-SLMKI 117 (718)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCccCCCC-CccCc
Confidence 3445544444 45799999999987666 68888
No 27
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=92.47 E-value=0.33 Score=49.77 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
+..+.++.+++.+.+. ..|+||||||.+.+. .+.+|
T Consensus 496 ~~~~~~~~~~~~l~~g-~~~~ifPeGt~~~~~-~~~~~ 531 (1146)
T PRK08633 496 GSKESLEFIRKALDDG-EVVCIFPEGAITRNG-QLNEF 531 (1146)
T ss_pred ChHHHHHHHHHHHhCC-CEEEEECCcCCCCCC-Cccch
Confidence 5667788888776654 589999999999887 68888
No 28
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=92.41 E-value=0.15 Score=48.15 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=36.5
Q ss_pred ccccc--eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCccccccccccccCCCCCCHHHHHHHHHHHHHH
Q psy15354 6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIAC 82 (218)
Q Consensus 6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~~~Ll~FLP~~~~~~~E~~~~FA~rV~~~iA~ 82 (218)
|+.|| ++|+... +++.+.+.++...+..+ ..|+||||||-+.-. -.. . ...+|.
T Consensus 141 ~~~g~I~v~R~~~~--D~~~l~~~l~~lk~~~~~~~LvIFPEGTR~t~~-~~~---------------~-----s~~~A~ 197 (374)
T PLN02510 141 HIFEFIPVERKWEV--DEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEA-KCQ---------------R-----SQKFAA 197 (374)
T ss_pred HHcCCeeeeCCccc--cHHHHHHHHHHHhccCCCcEEEEeCCcCCCCcc-ccc---------------h-----HHHHHH
Confidence 35566 6766433 55444444444433233 469999999965433 011 1 136777
Q ss_pred hCCCCccCCCH
Q psy15354 83 EGRLSPTLCTP 93 (218)
Q Consensus 83 ~Lgi~~t~~t~ 93 (218)
+.|++...+-.
T Consensus 198 k~glPil~~vL 208 (374)
T PLN02510 198 EHGLPILNNVL 208 (374)
T ss_pred HcCCCcceeEE
Confidence 88888765543
No 29
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=92.28 E-value=0.22 Score=42.35 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccCCCCeEeccCcccccCc-----cccccc
Q psy15354 22 STFLSKLKSFLCRTEAPIVLFPEEETTNGK-----KGLLKF 57 (218)
Q Consensus 22 ~~~~~~ik~~~~~~~~PlliFPEGt~TNg~-----~~Ll~F 57 (218)
.+.++++.+.+.. +..|+||||||.+... ..+..|
T Consensus 85 ~~~~~~~~~~L~~-G~~l~IFPEGtrs~~~~~~g~~~~~~f 124 (210)
T cd07986 85 RESLREALRHLKN-GGALIIFPAGRVSTASPPFGRVSDRPW 124 (210)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCcccccccccCCccccCCc
Confidence 3456677777764 4599999999988643 125677
No 30
>KOG1505|consensus
Probab=91.79 E-value=0.15 Score=47.73 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.5
Q ss_pred ccccc--eecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcc
Q psy15354 6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEE 46 (218)
Q Consensus 6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt 46 (218)
|..|| ++|+-.. ++ +.+.++.++..+.. .-|+||||||
T Consensus 120 ~~~~fiFl~R~~~~--d~-~~l~~~~k~l~~~~~~~wLlLFPEGT 161 (346)
T KOG1505|consen 120 WFHGFIFLERNWEK--DE-KTLISLLKHLKDSPDPYWLLLFPEGT 161 (346)
T ss_pred eecceEEEecchhh--hH-HHHHHHHHHhccCCCceEEEEecCCC
Confidence 44566 8888765 55 66677777766665 4699999998
No 31
>KOG4666|consensus
Probab=90.48 E-value=0.078 Score=49.72 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=51.9
Q ss_pred CeEeccCcccccCccccccc--------------------------------------------------cccccCC--C
Q psy15354 38 PIVLFPEEETTNGKKGLLKF--------------------------------------------------LPVMKRA--Q 65 (218)
Q Consensus 38 PlliFPEGt~TNg~~~Ll~F--------------------------------------------------LP~~~~~--~ 65 (218)
-..+||||+++||. ...-| +|++.++ +
T Consensus 264 ~f~LFde~~tg~~D-~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q 342 (412)
T KOG4666|consen 264 TFMLFDEGTTGNGD-YRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQ 342 (412)
T ss_pred hhheecCCCCCccc-HHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhc
Confidence 37999999999999 77777 7777776 3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHHHH
Q psy15354 66 NETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKR 102 (218)
Q Consensus 66 ~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~kr 102 (218)
++++..++.++++.+|..-++-.+..+|-||..|.-.
T Consensus 343 ~d~~ki~~~~f~~fa~~~p~~a~~~~~yld~~~~H~~ 379 (412)
T KOG4666|consen 343 KDDPKIYASNFRKFAATEPNLALSELGYLDKRIYHAT 379 (412)
T ss_pred ccCcceeHHHHHHHHHhCchhhhhhhccccchheeee
Confidence 5677799999999999988888888888887766543
No 32
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=90.18 E-value=1 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHH
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRL 158 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~i 158 (218)
+.+++++.+| .++.+..+..|..+.|+|+..++.|
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 4678999999 8999999999999999999999864
No 33
>PRK14014 putative acyltransferase; Provisional
Probab=89.19 E-value=0.42 Score=43.50 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=10.2
Q ss_pred CCeEeccCcccc
Q psy15354 37 APIVLFPEEETT 48 (218)
Q Consensus 37 ~PlliFPEGt~T 48 (218)
..|+||||||-.
T Consensus 175 ~~l~IFPEGTR~ 186 (301)
T PRK14014 175 TTIVNFVEGTRF 186 (301)
T ss_pred cEEEEeccceec
Confidence 579999999874
No 34
>KOG3037|consensus
Probab=82.19 E-value=1.1 Score=41.61 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=35.0
Q ss_pred CeEeccCc-------ccccCccccccc-------cccccCCCCCCHHHHHHHHHHHHHHh
Q psy15354 38 PIVLFPEE-------ETTNGKKGLLKF-------LPVMKRAQNETDEDLMSRIEACIACE 83 (218)
Q Consensus 38 PlliFPEG-------t~TNg~~~Ll~F-------LP~~~~~~~E~~~~FA~rV~~~iA~~ 83 (218)
=++|||+. .|+.|++++||| +==|.-...+.+.+||.+|-..||+-
T Consensus 63 DlIifPde~eF~kV~qC~tGRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p 122 (330)
T KOG3037|consen 63 DLIVFPDEAEFKKVDQCKTGRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKP 122 (330)
T ss_pred ceEEccCceeEEECCCCCCCcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCC
Confidence 49999987 599999999999 10111112566789999999999986
No 35
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=80.66 E-value=5.1 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHh
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL 159 (218)
..++++.+| -++.+.++.-|..+.|+++..++.|+
T Consensus 3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 456778888 69999999999999999999998775
No 36
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=80.38 E-value=2.4 Score=34.17 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 21 RSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 21 R~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
....++.+.+.+.+. ..+++||||+.+++. ..+.|
T Consensus 83 ~~~~~~~~~~~l~~g-~~l~i~peg~~~~~~-~~~~~ 117 (184)
T cd07989 83 AREALREAIEALKEG-ESVVIFPEGTRSRDG-ELLPF 117 (184)
T ss_pred HHHHHHHHHHHHHCC-CEEEEecCcccCCCC-CcCCC
Confidence 467777787776544 589999999999885 55544
No 37
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=80.16 E-value=1.1 Score=46.38 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 24 FLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 24 ~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
.++.+.+.++ ++..|+||||||.+.+. .+.+|
T Consensus 512 ~~~~~~~~l~-~g~~~~ifPeGtr~~~~-~~~~f 543 (1140)
T PRK06814 512 ATRTLIKEVQ-KGEKLVIFPEGRITVTG-SLMKI 543 (1140)
T ss_pred HHHHHHHHHH-CCCEEEEeCCCCCCCCC-Ccccc
Confidence 3444555553 34699999999999888 79999
No 38
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=79.93 E-value=6.4 Score=24.30 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
..++++.+| -++.+.++.-|..+.|+++..++.|++
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 356677777 588999999999999999999998874
No 39
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=79.26 E-value=1.2 Score=37.44 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCccccc
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTN 49 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TN 49 (218)
+|+.+.+.++ ++..|+||||||.+.
T Consensus 78 ~r~~~~~~L~-----~G~~l~ifPeGtr~~ 102 (212)
T cd07987 78 SRENCVRLLR-----EGELVLIFPGGAREA 102 (212)
T ss_pred CHHHHHHHhc-----CCCEEEEEcCCHHHH
Confidence 6666555554 457899999999864
No 40
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=74.88 E-value=6 Score=32.12 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 23 TFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 23 ~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
..+..+.+.+.+ +..|+|||||+.+......+.|
T Consensus 78 ~~~~~~~~~l~~-g~~v~i~pD~~~~~~~~~~~~F 111 (192)
T cd07984 78 GGLRELIRALKK-GEIVGILPDQDPGRKGGVFVPF 111 (192)
T ss_pred chHHHHHHHHhC-CCEEEEEeCCCCCCCCCEEecc
Confidence 455556565555 3579999999976442134444
No 41
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=74.67 E-value=3.5 Score=33.84 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=38.8
Q ss_pred ccccc--eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccccccccCCCCCCHHHHHHHHHHHHHHh
Q psy15354 6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACE 83 (218)
Q Consensus 6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~FLP~~~~~~~E~~~~FA~rV~~~iA~~ 83 (218)
+..|. ++++... +..+.+..+.+.+.+ +..|.|||||+- |. .- + | ..--..||..
T Consensus 68 ~~~g~~~i~r~~~~--~~~~~~~~~~~~lk~-g~~v~ifpeG~r--~~--~~-----------~----~-~~G~~~lA~~ 124 (189)
T cd07983 68 ERLGIRVVRGSSSR--GGAAALREMLRALKD-GYNIAITPDGPR--GP--RY-----------K----V-KPGVILLARK 124 (189)
T ss_pred HHhCCCEEEcCCCC--cHHHHHHHHHHHHhC-CCEEEEcCCCCC--Cc--ce-----------e----c-chHHHHHHHH
Confidence 34455 7776543 455666666666654 468999999963 22 00 0 1 1222457778
Q ss_pred CCCCccCCCH
Q psy15354 84 GRLSPTLCTP 93 (218)
Q Consensus 84 Lgi~~t~~t~ 93 (218)
.|++..+...
T Consensus 125 ~~~pIvPv~i 134 (189)
T cd07983 125 SGAPIVPVAI 134 (189)
T ss_pred hCCCEEEEEE
Confidence 8888877654
No 42
>KOG4588|consensus
Probab=68.85 E-value=4.9 Score=36.19 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 121 MYAEAQRIREIFP-NIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 121 ~~~m~~~V~~~fP-~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+|+-+.++.+||| .....-|-+=|..+.+.|.+|+.-||+|.
T Consensus 21 vD~tid~llaM~~L~~~~S~~~~~~~~~Dsd~s~~~~e~l~~~ 63 (267)
T KOG4588|consen 21 VDRTIDDLLAMFPLSLSNSHIEYVLRKYDSDVSATINELLYDN 63 (267)
T ss_pred HHHHHHHHHHhcccccCCCccceeeecccccccccHHHHhccC
Confidence 6667777777777 55555555555556677777777777765
No 43
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=66.80 E-value=5.8 Score=41.11 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=26.7
Q ss_pred eecCCCCcccHHH---HHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 11 INLGRNTRFSRST---FLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 11 ~~~g~~~~~sR~~---~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
|+|+.. ++.. ++++..+.+-..+.+|.+|||||-+-.- -|+.|
T Consensus 321 IrR~~~---~~~ly~~vl~eyi~~Ll~~G~~v~iFpEGTRSrtG-kLl~p 366 (783)
T PRK03355 321 IRRNIG---DDPLYKYVLREYVGYLVEKRFNLSWYIEGTRSRTG-KLLPP 366 (783)
T ss_pred ecCCCC---chHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCC-CCCcc
Confidence 777643 3333 3333344555556899999999988543 26666
No 44
>KOG0943|consensus
Probab=59.90 E-value=12 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
..++.++|+|+-.-++++|++.|||++=+|...++|+|+.-
T Consensus 190 EELInnaQqVLQGKSRdVIIRELQRTgLdVNeAVNNLLSRD 230 (3015)
T KOG0943|consen 190 EELINNAQQVLQGKSRDVIIRELQRTGLDVNEAVNNLLSRD 230 (3015)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHhCCcHHHHHHhhhccc
Confidence 56889999999999999999999997779999999999863
No 45
>PLN02783 diacylglycerol O-acyltransferase
Probab=56.79 E-value=11 Score=34.73 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCccc
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEET 47 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~ 47 (218)
+|+.+.+.++ .+..|+|||||+-
T Consensus 159 ~R~~~~~~Lk-----~G~sv~IfPeGtr 181 (315)
T PLN02783 159 SRKNFTSLLK-----AGYSCIIVPGGVQ 181 (315)
T ss_pred cHHHHHHHHh-----CCCEEEEEcCCch
Confidence 6666555444 3578999999984
No 46
>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.
Probab=56.11 E-value=13 Score=38.59 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=26.4
Q ss_pred ceecCCCCcccH--HHHHHHHHHHhccCCCCeEeccCcccc-cCccccccc
Q psy15354 10 LINLGRNTRFSR--STFLSKLKSFLCRTEAPIVLFPEEETT-NGKKGLLKF 57 (218)
Q Consensus 10 ~~~~g~~~~~sR--~~~~~~ik~~~~~~~~PlliFPEGt~T-Ng~~~Ll~F 57 (218)
||+|+..+ ++ .+++.+--..+-..+.+|.+|||||-+ +|+ ++.|
T Consensus 345 fIrR~~~~--~~ly~~vl~eyi~~ll~~G~~v~iFpEGtRSrtGk--ll~p 391 (799)
T TIGR03703 345 FIRRSFKG--NKLYSAVFREYLHELFAKGYSVEYFVEGGRSRTGR--LLPP 391 (799)
T ss_pred EeecCCCc--chhHHHHHHHHHHHHHhCCCEEEEEcCCCcCCCCC--ccch
Confidence 47886533 33 233333223344555799999999987 454 6677
No 47
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=55.23 E-value=10 Score=33.89 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHhccCCCCeEeccCcccc
Q psy15354 24 FLSKLKSFLCRTEAPIVLFPEEETT 48 (218)
Q Consensus 24 ~~~~ik~~~~~~~~PlliFPEGt~T 48 (218)
.++...+.+...+.-|.||||||=+
T Consensus 103 alk~~~~lLk~G~~~i~IfPEGtR~ 127 (235)
T cd07985 103 TLKEMQQLLNEGGQLIWVAPSGGRD 127 (235)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCCCC
Confidence 4455556666666668999999876
No 48
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=46.67 E-value=10 Score=28.50 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=15.5
Q ss_pred CeEeccCc-------ccccCccccccc
Q psy15354 38 PIVLFPEE-------ETTNGKKGLLKF 57 (218)
Q Consensus 38 PlliFPEG-------t~TNg~~~Ll~F 57 (218)
-++|||.. .|+||++.+|+|
T Consensus 45 d~il~pg~~~f~~V~~c~tGRVy~LkF 71 (85)
T PF04683_consen 45 DLILFPGDATFKKVPQCKTGRVYVLKF 71 (85)
T ss_dssp EEEE-TTTEEEEE-TTSSTS-EEEEEE
T ss_pred ceecCCCCeEEEECCcCCCCeEEEEEE
Confidence 58889987 589999999998
No 49
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=44.36 E-value=26 Score=36.57 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=25.5
Q ss_pred ceecCCCCcccHH--HHHHHHHHHhccCCCCeEeccCcccc-cCccccccc
Q psy15354 10 LINLGRNTRFSRS--TFLSKLKSFLCRTEAPIVLFPEEETT-NGKKGLLKF 57 (218)
Q Consensus 10 ~~~~g~~~~~sR~--~~~~~ik~~~~~~~~PlliFPEGt~T-Ng~~~Ll~F 57 (218)
||+|+..+ ++. +++..-.+.+-..+.+|.+|||||=+ +|+ ++.|
T Consensus 355 fIrR~~~~--~~ly~~vl~~yi~~ll~~G~~v~iFpEGtRSRtGk--llpp 401 (818)
T PRK04974 355 FIRRSFKG--NKLYSTVFREYLGELFARGYSVEYFVEGGRSRTGR--LLQP 401 (818)
T ss_pred EeeCCCCc--hHHHHHHHHHHHHHHHhCCCEEEEEcCCCcCCCCC--Ccch
Confidence 48887543 331 22222222333456799999999876 554 6666
No 50
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=42.50 E-value=70 Score=21.04 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHh
Q psy15354 125 AQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159 (218)
Q Consensus 125 ~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL 159 (218)
++-...+||+-.++.+--=|++=.|+|-.+||-+|
T Consensus 5 idiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 5 IDILTRVFPHQKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred HHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence 45677899999999999999999999999999875
No 51
>KOG4588|consensus
Probab=40.89 E-value=19 Score=32.53 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=27.9
Q ss_pred hCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 131 IFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 131 ~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
|||.+.+++|--=|.-|-|.||.||+-+|.
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~lla 30 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLA 30 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHH
Confidence 899999999999999999999999998753
No 52
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=39.08 E-value=19 Score=23.85 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.0
Q ss_pred ccccCCCC--CCHHHHHHHHHHHHHHhCCCC
Q psy15354 59 PVMKRAQN--ETDEDLMSRIEACIACEGRLS 87 (218)
Q Consensus 59 P~~~~~~~--E~~~~FA~rV~~~iA~~Lgi~ 87 (218)
|+++++.+ +|+..|.+.|+. +|...|+.
T Consensus 3 Pvf~Pt~eEF~Dp~~yi~~i~~-~~~~yGi~ 32 (42)
T smart00545 3 PVFYPTMEEFKDPLAYISKIRP-QAEKYGIC 32 (42)
T ss_pred CeEcCCHHHHHCHHHHHHHHHH-HHhhCCEE
Confidence 67777755 488999999998 58888863
No 53
>PRK07483 hypothetical protein; Provisional
Probab=38.26 E-value=40 Score=32.10 Aligned_cols=58 Identities=12% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCCCeEeccCcccccCcc-ccccccccccCCCCCCHHHHHHHHHHHHHHhC
Q psy15354 24 FLSKLKSFLCRTEAPIVLFPEEETTNGKK-GLLKFLPVMKRAQNETDEDLMSRIEACIACEG 84 (218)
Q Consensus 24 ~~~~ik~~~~~~~~PlliFPEGt~TNg~~-~Ll~FLP~~~~~~~E~~~~FA~rV~~~iA~~L 84 (218)
+.+.+.+.+-..+ |++.|-|.++||.. -.|+|.||+.-+ ++.-+++.+++.+.+++.+
T Consensus 381 ~~~~~~~~~~~~G--ll~~~~~~~~~~~~~~~l~~~PpL~it-~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 381 LHARIKREAMARG--LMVYPMGGTIDGVRGDHVLLAPPFIIT-AAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred HHHHHHHHHHHCC--cEEEecCccccCCCCCEEEEECCCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 88889887776541 378999999986 4556677788888877543
No 54
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=36.32 E-value=33 Score=33.01 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=25.6
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|++||...|.. -.+++++.|++.++.-+
T Consensus 94 gnnwa~Gy~~~g~~---~~~~~~d~ir~~~E~cd 124 (446)
T cd02189 94 GNNWAYGYYVHGPQ---IKEDILDLIRKEVEKCD 124 (446)
T ss_pred ccchhccccccchh---hHHHHHHHHHHHHHhCC
Confidence 78999999988754 67889999988887766
No 55
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=35.96 E-value=29 Score=28.80 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCccccceecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCc
Q psy15354 4 GGECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGK 51 (218)
Q Consensus 4 ~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~ 51 (218)
|=.|.|| +|+.-+.+|-..+..-+.||+.-|-|..|||-
T Consensus 68 G~~fY~Y---------s~~~Pl~~vi~~lNsl~~~i~~mP~GyvthGl 106 (142)
T PF11633_consen 68 GVQFYFY---------SSKTPLTDVIKALNSLGKPIITMPFGYVTHGL 106 (142)
T ss_dssp SSEEEEE----------TTS-HHHHHHHHCCCTS-EEES-TTCCCCTB
T ss_pred ceEEEEE---------ecCCcHHHHHHHHhhcCCCceeeeeeeeeccc
Confidence 4456667 67777777877778778999999999999998
No 56
>PF10730 DUF2521: Protein of unknown function (DUF2521); InterPro: IPR019667 This entry represents a protein of unknown function specific to Bacillus.
Probab=35.69 E-value=85 Score=26.31 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 121 MYAEAQRIREIF-PNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 121 ~~~m~~~V~~~f-P~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
|+.|-+.|++-| |-+|-.....+-.- .+|+|.+||-.|-|.
T Consensus 28 l~~l~~~v~~~f~~~~~~~~~~~~~~e-e~CiD~AIEAYLLGa 69 (147)
T PF10730_consen 28 LKQLKESVREHFGPIFPFYFLMHPIIE-EGCIDVAIEAYLLGA 69 (147)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhhhHH-HHHHHHHHHHHHhhc
Confidence 788888888765 67777777777777 999999999999997
No 57
>smart00351 PAX Paired Box domain.
Probab=35.29 E-value=2.2e+02 Score=22.35 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHhCCCCccCCCHHHHHHHHHHHHHHH-hhcC--C--CCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCC-
Q psy15354 77 EACIACEGRLSPTLCTPSEKYELEKRLVRAL-ATQN--S--GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGN- 150 (218)
Q Consensus 77 ~~~iA~~Lgi~~t~~t~~dk~e~~kr~~~~~-~~~~--~--~~~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~s- 150 (218)
...||+.+||... -...+.+|++..- ..++ . .+..........+.+..+-.|++....|...|.. .|-
T Consensus 36 ~~~iA~~~gvs~~-----tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~~~p~~t~~el~~~L~~-~gv~ 109 (125)
T smart00351 36 PCDISRQLCVSHG-----CVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLS-EGVC 109 (125)
T ss_pred HHHHHHHHCcCHH-----HHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-cCCC
Confidence 4567778886543 2333444443321 1221 1 1122233445556666789999999999999986 443
Q ss_pred ------HHHHHHHHh
Q psy15354 151 ------AELTISRLI 159 (218)
Q Consensus 151 ------v~~T~~~iL 159 (218)
...||.++|
T Consensus 110 ~~~~~Ps~sti~~~l 124 (125)
T smart00351 110 DKDNVPSVSSINRIL 124 (125)
T ss_pred cCCCCCChhhHHHhh
Confidence 567888776
No 58
>PTZ00387 epsilon tubulin; Provisional
Probab=32.52 E-value=39 Score=32.85 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=26.6
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|+.||...|.. -.+.+.+.|++.++.-+
T Consensus 99 GNnwa~G~~~~g~~---~~d~~~d~Ir~~~E~cD 129 (465)
T PTZ00387 99 GNNWAVGHMEYGDK---YIDSISESVRRQVEQCD 129 (465)
T ss_pred CCCcCCCcccccHH---HHHHHHHHHHHHHHhcc
Confidence 78999999988853 68899999999988777
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.48 E-value=1e+02 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCCC
Q psy15354 117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSS 163 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr~ 163 (218)
.++++..+|++|-+| -++++.+.+.|.-.=+|-|-.||.||.|.+
T Consensus 152 ~g~~~e~~I~~i~eM--Gf~R~qV~~ALRAafNNPdRAVEYL~tGIP 196 (378)
T TIGR00601 152 VGSERETTIEEIMEM--GYEREEVERALRAAFNNPDRAVEYLLTGIP 196 (378)
T ss_pred cchHHHHHHHHHHHh--CCCHHHHHHHHHHHhCCHHHHHHHHHhCCC
Confidence 567899999999999 489999999999999999999999999984
No 60
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.34 E-value=2.3e+02 Score=27.63 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=55.8
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHhh-----ccCCHHHHHHHHhcCC-------CCCCCCCCCCCCCCCCCCCCCC
Q psy15354 117 YDSRMYAEAQRIREIFPNIPLNAIVRELGR-----SHGNAELTISRLIADS-------SFQNLSFNSSSSFNQSPSPSSP 184 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~-----~t~sv~~T~~~iL~Gr-------~f~p~~~~~~~~~~~s~~~~~p 184 (218)
...+...+++.+++.+|++. |.-|+.- +.-..+.|.+-|-+-+ .|.|.|-+++ ..-+
T Consensus 278 t~e~~~~~i~k~R~~~Pd~~---i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpA--------a~~~ 346 (437)
T COG0621 278 TVEEYLEIIEKLRAARPDIA---ISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPA--------ALMP 346 (437)
T ss_pred CHHHHHHHHHHHHHhCCCce---EeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCcc--------ccCC
Confidence 45578999999999999987 3344432 1235667888888876 4555542111 0000
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15354 185 STPQF-NASPHNRMSAFAEKKAQFIAEARRRAA 216 (218)
Q Consensus 185 ~~~~f-~~s~~eRq~sLqeRK~~MI~~ARrRyl 216 (218)
.+. ..-..+|-..|++...+......++|+
T Consensus 347 --~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~v 377 (437)
T COG0621 347 --DQVPEEVKKERLRRLQELQQQISAEFNQKLV 377 (437)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001 113358888999999999988888875
No 61
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=29.64 E-value=18 Score=26.49 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHhCCC-C-CHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 118 DSRMYAEAQRIREIFPN-I-PLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 118 ~~~~~~m~~~V~~~fP~-v-~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
-.+|.++..+|++++-. + |...|..-|-.+-=+|+.|++.||...
T Consensus 25 ~~~L~~~l~~vr~~Lg~~~~~e~~i~eal~~~~fDvekAl~~Ll~~~ 71 (79)
T PF08938_consen 25 QAQLYSCLPQVREVLGDYVPPEEQIKEALWHYYFDVEKALDYLLSKF 71 (79)
T ss_dssp HHHHCHHCCCHHHHCCCCC--CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 34688899999998866 7 899999999999999999999999875
No 62
>PTZ00335 tubulin alpha chain; Provisional
Probab=29.03 E-value=44 Score=32.26 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|++||...|.. -.+.+++.|++.++.-+
T Consensus 100 gnnwa~Gy~~~G~~---~~d~i~d~ir~~~E~cD 130 (448)
T PTZ00335 100 ANNFARGHYTIGKE---IVDLCLDRIRKLADNCT 130 (448)
T ss_pred CCcccccccchhhh---HhHHHHHHHHHhHHhcc
Confidence 67899999988853 57888999988887666
No 63
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=27.99 E-value=55 Score=30.81 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|++|++||...|.. -.+++.+.|++.++.-+
T Consensus 67 Gnn~a~G~~~~g~~---~~~~~~d~ir~~~E~cd 97 (379)
T cd02190 67 GNNWAVGYHQYGHQ---YIDSILEKIRKAAEKCD 97 (379)
T ss_pred CCCccceeeccchh---HHHHHHHHHHHHHhhCc
Confidence 78999999988743 67888999999988777
No 64
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=27.40 E-value=45 Score=31.98 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=25.5
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|++||...|.. -.+.+++.|++.++.-+
T Consensus 99 gnnwa~Gy~~~G~~---~~~~i~d~ir~~~E~cD 129 (434)
T cd02186 99 ANNFARGHYTIGKE---IIDLVLDRIRKLADNCT 129 (434)
T ss_pred CcccccccchhHHH---HHHHHHHHHHHHHhcCC
Confidence 67899999998854 67888899988887666
No 65
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.30 E-value=2.3e+02 Score=20.39 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCCCC
Q psy15354 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSF 164 (218)
Q Consensus 120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr~f 164 (218)
....+|+-|+|+--.-+...|..=|..-.-+.+.|++++|.-.+|
T Consensus 4 ~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD~F 48 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQDPF 48 (60)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcCcH
Confidence 356799999999888899999999998889999999999986544
No 66
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=27.00 E-value=4.8e+02 Score=23.70 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred ccccceecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc------------------cccccC----
Q psy15354 6 ECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF------------------LPVMKR---- 63 (218)
Q Consensus 6 ~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F------------------LP~~~~---- 63 (218)
|.+||-|.|-. +..+++..++.-+...+.||++=.|++ -|-. .+-+- .|..+-
T Consensus 51 ~s~G~pD~~~~---~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~-~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~ 125 (285)
T TIGR02320 51 TSRGVPDIEEA---SWTQRLDVVEFMFDVTTKPIILDGDTG-GNFE-HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGN 125 (285)
T ss_pred HHCCCCCcCcC---CHHHHHHHHHHHHhhcCCCEEEecCCC-CCHH-HHHHHHHHHHHcCCeEEEEeccCCCccccccCC
Confidence 67899998765 788888888887777778998888877 3322 22111 233221
Q ss_pred C---CCCCHHHHHHHHHHHHHHhCCC--Cc--------cCCCHHHHHHHHHHHHHHHhh-c----CCCCCCCchHHHHHH
Q psy15354 64 A---QNETDEDLMSRIEACIACEGRL--SP--------TLCTPSEKYELEKRLVRALAT-Q----NSGARRYDSRMYAEA 125 (218)
Q Consensus 64 ~---~~E~~~~FA~rV~~~iA~~Lgi--~~--------t~~t~~dk~e~~kr~~~~~~~-~----~~~~~~~~~~~~~m~ 125 (218)
. .--+.++++.+++.+.+..-+. .. ..+..+| ..+|.+.-... . .++...+..++...+
T Consensus 126 ~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~e---Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~ 202 (285)
T TIGR02320 126 DVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMED---ALKRAEAYAEAGADGIMIHSRKKDPDEILEFA 202 (285)
T ss_pred CCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHH---HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHH
Confidence 1 1136789999999988764332 11 1223333 33443332221 1 122235567888999
Q ss_pred HHHHHhCCCCCH
Q psy15354 126 QRIREIFPNIPL 137 (218)
Q Consensus 126 ~~V~~~fP~v~~ 137 (218)
+.|.-+||.+|+
T Consensus 203 ~~~~~~~p~~pl 214 (285)
T TIGR02320 203 RRFRNHYPRTPL 214 (285)
T ss_pred HHhhhhCCCCCE
Confidence 999999999886
No 67
>PLN00220 tubulin beta chain; Provisional
Probab=26.68 E-value=56 Score=31.42 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=25.4
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|++||...|.. -.+.+++.|++.+..-+
T Consensus 98 gnnwa~G~~~~g~~---~~~~~~d~ir~~~E~cd 128 (447)
T PLN00220 98 GNNWAKGHYTEGAE---LIDSVLDVVRKEAENCD 128 (447)
T ss_pred CCccCceeecccHH---HHHHHHHHHHHHHHhCc
Confidence 78999999887753 67888999998887666
No 68
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=26.28 E-value=72 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.2
Q ss_pred HHHHHhCCCCCHHHHHHHHhh
Q psy15354 126 QRIREIFPNIPLNAIVRELGR 146 (218)
Q Consensus 126 ~~V~~~fP~v~~~~I~~DL~~ 146 (218)
..+.+.| +|+...|++||..
T Consensus 18 ~ela~~~-~VS~~TiRRDl~~ 37 (57)
T PF08220_consen 18 KELAEEF-GVSEMTIRRDLNK 37 (57)
T ss_pred HHHHHHH-CcCHHHHHHHHHH
Confidence 4556677 8999999999975
No 69
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=25.32 E-value=39 Score=27.12 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 124 EAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 124 m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
|+++.+..||.++.+.|...|.. =.+.+|-+.|..
T Consensus 1 ~~~~~~~~FP~L~~~eIv~~L~~--~~~~~t~~dl~k 35 (146)
T PF03800_consen 1 MASQNKYSFPLLSPDEIVNCLQE--CGIPVTEEDLKK 35 (146)
T ss_dssp ----------S--HHHHHHHHHH--HT--HHHHC--G
T ss_pred CCccccCCCCCCCHHHHHHHHHH--CCCCcCHHHHcC
Confidence 67788999999999999999997 345577666654
No 70
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=24.90 E-value=73 Score=34.46 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=20.0
Q ss_pred ceecCCCCcccHHHHHHHHHHH---hccCCCCeEeccCccc
Q psy15354 10 LINLGRNTRFSRSTFLSKLKSF---LCRTEAPIVLFPEEET 47 (218)
Q Consensus 10 ~~~~g~~~~~sR~~~~~~ik~~---~~~~~~PlliFPEGt~ 47 (218)
||+|+.. ++.-...-++++ +-..+.+|.+|||||=
T Consensus 683 FIRRsf~---~d~LYsAVLreYI~~LLk~G~sVeiFpEGTR 720 (1108)
T PTZ00374 683 FMRRSFR---DDPLYAALFKEYVRHLVLRRRPLEFFIEGTR 720 (1108)
T ss_pred EEeCCCC---chHHHHHHHHHHHHHHHhCCCeEEEecCcCc
Confidence 3778743 322222222433 3345689999999963
No 71
>KOG4501|consensus
Probab=24.70 E-value=1.1e+02 Score=31.15 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.++..|-+|.+++|++-..-|+.-|..-| +++.-|.+||+.+
T Consensus 431 d~ds~~saV~~~lPdlg~gfi~~~l~~y~-d~eqvI~~ilddr 472 (707)
T KOG4501|consen 431 DTDSSASAVYTELPDLGPGFIASSLSSYT-DVEQVIRKILDDR 472 (707)
T ss_pred chhhHHHHHHHhCccccchHHHHHHHhhc-CHHHHHHHhhccc
Confidence 68999999999999999999999999955 9999999999997
No 72
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=23.91 E-value=1.5e+02 Score=20.21 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy15354 190 NASPHNRMSAFAEKKAQFIAEARR 213 (218)
Q Consensus 190 ~~s~~eRq~sLqeRK~~MI~~ARr 213 (218)
-.+...|+..|.+||.-|+-.|..
T Consensus 3 I~n~~~R~~tf~KRk~gL~KKa~E 26 (51)
T PF00319_consen 3 IENKSRRKVTFSKRKKGLFKKASE 26 (51)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHhHHHHHHhhhhhccce
Confidence 357789999999999999988863
No 73
>PLN00221 tubulin alpha chain; Provisional
Probab=23.89 E-value=58 Score=31.45 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|.+|++||...|.. -.+.+.+.|++.++.-+
T Consensus 100 gNnwa~Gy~~~g~~---~~~~i~d~ir~~~E~cD 130 (450)
T PLN00221 100 ANNFARGHYTIGKE---IVDLCLDRIRKLADNCT 130 (450)
T ss_pred cccccccccchhHH---HHHHHHHHHHHHHHhcc
Confidence 67899999988853 67889999998887766
No 74
>KOG0010|consensus
Probab=23.30 E-value=1.9e+02 Score=28.77 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=37.2
Q ss_pred CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
....+++...+|.++|-+ +.+++-++.|..++|+|.++||++|.+
T Consensus 449 ~pe~r~q~QLeQL~~MGF-~nre~nlqAL~atgGdi~aAverll~s 493 (493)
T KOG0010|consen 449 PPEERYQTQLEQLNDMGF-LDREANLQALRATGGDINAAVERLLGS 493 (493)
T ss_pred CchHHHHHHHHHHHhcCC-ccHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 456678899999999987 466777777888899999999999853
No 75
>KOG2847|consensus
Probab=21.67 E-value=44 Score=30.65 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354 25 LSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57 (218)
Q Consensus 25 ~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F 57 (218)
++..-+.++.. .=|.|||||...-+.+..+.|
T Consensus 140 md~~i~kLn~g-~WVHiFPEGkV~q~~~~~~rf 171 (286)
T KOG2847|consen 140 MDFAIEKLNDG-SWVHIFPEGKVNQMEKEMLRF 171 (286)
T ss_pred HHHHHHhcCCC-CeEEECCCceeeccccchhhe
Confidence 34444444433 359999999877455588888
No 76
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.53 E-value=74 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=14.9
Q ss_pred ccCCCCCCHHHHHHHHHH
Q psy15354 61 MKRAQNETDEDLMSRIEA 78 (218)
Q Consensus 61 ~~~~~~E~~~~FA~rV~~ 78 (218)
|+-+++|++.+|-.||-.
T Consensus 3 YSESDnETA~~FL~RvGr 20 (60)
T PF06072_consen 3 YSESDNETATEFLRRVGR 20 (60)
T ss_pred cCccccccHHHHHHHHhH
Confidence 456789999999999865
No 77
>PF08804 gp32: gp32 DNA binding protein like; InterPro: IPR012339 This entry is represented by the Bacteriophage T4, Gp32, single-stranded DNA-binding protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp32 is essential for T4 DNA replication, recombination and repair, acting to stimulate replisome processing and accuracy through its binding to ssDNA as the replication fork advances. The crystal structure of Gp32 shows an ssDNA binding cleft comprised of regions from three structural subdomains, through which ssDNA can slide freely []. The structure of Gp32 is similar to other phage ssDNA-binding proteins such as Gp2.5 from bacteriophage T4, and gene V protein, both of which have a nucleic acid-binding OB-type fold. However, Gp32 contains a zinc-finger subdomain at residues 63-111 that is not found in the other two phage proteins.; GO: 0003697 single-stranded DNA binding; PDB: 1GPC_A 2A1K_B 2ATQ_B.
Probab=21.48 E-value=25 Score=27.32 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=7.1
Q ss_pred ccCcccccccccc
Q psy15354 48 TNGKKGLLKFLPV 60 (218)
Q Consensus 48 TNg~~~Ll~FLP~ 60 (218)
-||. +||+|||+
T Consensus 13 GNG~-AvIRFLPa 24 (94)
T PF08804_consen 13 GNGS-AVIRFLPA 24 (94)
T ss_dssp S-EE-EEEEE---
T ss_pred CCce-EEEEecCC
Confidence 4888 99999985
No 78
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=20.47 E-value=87 Score=29.19 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=25.7
Q ss_pred CCCccccceecCCCCcccHHHHHHHHHHHhccCC
Q psy15354 3 GGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTE 36 (218)
Q Consensus 3 ~~~~~~g~~~~g~~~~~sR~~~~~~ik~~~~~~~ 36 (218)
|++|++||...|.. -.+.+.+.|++.++.-|
T Consensus 57 gnn~a~G~~~~g~~---~~e~~~d~ir~~~E~cD 87 (382)
T cd06059 57 GNNWARGYYTIGPE---LIDEILDRIRKQVEKCD 87 (382)
T ss_pred cccccccccccCHH---HHHHHHHHHHHHHHhCC
Confidence 78999999888742 67888899998888777
No 79
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.26 E-value=2.5e+02 Score=17.90 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.++.+..++- .++...-+.=|+.+.++++..|+.+++..
T Consensus 2 e~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~~~ 40 (43)
T PF14555_consen 2 EKIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFDDG 40 (43)
T ss_dssp HHHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4666777776 45778778889999999999999998743
Done!