Query psy15354
Match_columns 218
No_of_seqs 208 out of 362
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:46:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ekf_A Ancient ubiquitous prot 99.8 1.9E-20 6.5E-25 132.4 6.9 52 115-167 7-59 (61)
2 2ejs_A Autocrine motility fact 99.8 1.4E-19 4.9E-24 126.8 6.5 47 115-162 7-53 (58)
3 4g3o_A E3 ubiquitin-protein li 99.8 2.7E-19 9.1E-24 125.2 5.7 44 118-162 14-57 (58)
4 3h8k_B Autocrine motility fact 99.1 1.1E-10 3.6E-15 70.5 3.9 26 192-217 2-27 (28)
5 2dhy_A CUE domain-containing p 98.5 1.6E-07 5.4E-12 67.3 5.1 46 117-162 14-59 (67)
6 2di0_A Activating signal coint 97.9 2.6E-05 9E-10 56.4 6.8 48 115-162 7-54 (71)
7 1wgl_A TOLL-interacting protei 97.8 5.1E-05 1.8E-09 52.8 5.9 42 121-162 9-50 (59)
8 1otr_A Protein CUE2; protein-p 97.6 6.4E-05 2.2E-09 50.6 4.6 41 122-162 5-45 (49)
9 1p3q_Q VPS9P, vacuolar protein 97.4 6.5E-05 2.2E-09 51.6 2.3 41 120-160 11-51 (54)
10 2qho_B E3 ubiquitin-protein li 96.5 0.0056 1.9E-07 41.3 5.6 40 122-161 10-49 (53)
11 2knz_A Ubiquilin-4; cytoplasm, 93.8 0.17 5.8E-06 33.8 6.0 45 116-162 6-51 (53)
12 2jy5_A Ubiquilin-1; UBA, alter 92.6 0.26 9E-06 32.7 5.4 43 117-161 8-51 (52)
13 1wji_A Tudor domain containing 92.4 0.35 1.2E-05 33.5 6.0 39 122-162 10-48 (63)
14 1ify_A HHR23A, UV excision rep 92.0 0.39 1.3E-05 31.5 5.6 44 117-162 4-47 (49)
15 2bwb_A Ubiquitin-like protein 91.3 0.42 1.4E-05 31.1 5.1 41 119-161 5-46 (46)
16 1wj7_A Hypothetical protein (R 90.0 0.73 2.5E-05 35.3 6.2 44 118-162 36-79 (104)
17 1vg5_A RSGI RUH-014, rhomboid 89.1 0.59 2E-05 33.5 4.8 45 116-162 24-68 (73)
18 1z96_A DNA-damage, UBA-domain 88.8 0.78 2.7E-05 28.0 4.7 38 120-159 3-40 (40)
19 1vej_A Riken cDNA 4931431F19; 88.4 0.75 2.6E-05 33.0 5.0 44 117-162 25-69 (74)
20 1wr1_B Ubiquitin-like protein 88.3 0.9 3.1E-05 31.0 5.1 43 117-161 13-56 (58)
21 2dah_A Ubiquilin-3; UBA domain 87.1 0.83 2.9E-05 30.6 4.3 42 119-162 7-49 (54)
22 2g3q_A Protein YBL047C; endocy 86.7 1.4 4.7E-05 27.6 5.0 38 122-161 5-42 (43)
23 2dag_A Ubiquitin carboxyl-term 85.8 3.6 0.00012 29.1 7.3 39 122-162 10-49 (74)
24 2dak_A Ubiquitin carboxyl-term 84.3 2 6.8E-05 29.3 5.2 39 122-162 10-48 (63)
25 2dae_A KIAA0733 protein; mitog 84.2 1.6 5.4E-05 31.5 4.7 36 123-158 12-47 (75)
26 2r2y_A Protein ADRM1; proteaso 81.4 1.3 4.5E-05 35.9 3.9 45 39-83 76-134 (153)
27 1wiv_A UBP14, ubiquitin-specif 81.0 3.2 0.00011 29.3 5.3 39 122-162 30-68 (73)
28 2dna_A Unnamed protein product 80.6 3.5 0.00012 29.0 5.4 46 116-162 14-59 (67)
29 2dai_A Ubadc1, ubiquitin assoc 79.4 5.3 0.00018 29.0 6.2 39 122-162 30-68 (83)
30 2ekk_A UBA domain from E3 ubiq 78.3 4 0.00014 26.0 4.7 37 122-161 10-46 (47)
31 2crn_A Ubash3A protein; compac 76.3 5.8 0.0002 27.3 5.4 37 124-162 12-49 (64)
32 2cpw_A CBL-interacting protein 73.9 6.3 0.00022 27.0 5.1 38 123-162 21-59 (64)
33 2kr0_A Proteasomal ubiquitin r 70.7 2.4 8.2E-05 39.4 2.9 44 39-82 77-134 (411)
34 1vek_A UBP14, ubiquitin-specif 70.3 14 0.00046 26.7 6.4 39 122-162 30-69 (84)
35 4b4t_X 26S proteasome regulato 69.8 3.6 0.00012 33.4 3.5 44 38-83 65-132 (156)
36 1veg_A NEDD8 ultimate buster-1 68.5 9.2 0.00031 27.9 5.1 39 122-162 30-68 (83)
37 2cwb_A Chimera of immunoglobul 68.0 6.9 0.00024 29.9 4.6 44 118-162 63-106 (108)
38 2dkl_A Trinucleotide repeat co 67.9 14 0.00047 26.8 6.0 45 116-162 15-60 (85)
39 1iuq_A Glycerol-3-phosphate ac 67.7 1.1 3.9E-05 41.0 0.1 22 29-50 216-237 (367)
40 3k9o_A Ubiquitin-conjugating e 64.0 20 0.0007 29.3 7.1 86 70-160 108-200 (201)
41 1whc_A RSGI RUH-027, UBA/UBX 3 60.6 10 0.00035 25.9 3.9 37 124-162 12-49 (64)
42 1ufz_A Hypothetical protein BA 58.4 25 0.00084 25.7 5.8 46 117-162 30-76 (83)
43 2lbc_A Ubiquitin carboxyl-term 57.8 17 0.0006 27.5 5.3 40 121-162 78-117 (126)
44 2cp8_A NEXT to BRCA1 gene 1 pr 53.0 38 0.0013 22.7 5.6 43 119-162 7-49 (54)
45 3e46_A Ubiquitin-conjugating e 52.6 42 0.0014 28.8 7.4 86 70-160 160-252 (253)
46 2oo9_A E3 ubiquitin-protein li 51.3 36 0.0012 22.2 5.1 41 119-161 2-42 (46)
47 1dv0_A DNA repair protein HHR2 44.9 15 0.00051 23.6 2.5 37 124-162 7-43 (47)
48 2p5k_A Arginine repressor; DNA 42.8 30 0.001 22.0 3.9 26 121-146 22-47 (64)
49 2ooa_A E3 ubiquitin-protein li 39.6 30 0.001 23.1 3.4 36 123-160 13-48 (52)
50 2d9s_A CBL E3 ubiquitin protei 37.0 35 0.0012 22.9 3.4 36 125-162 13-48 (53)
51 2juj_A E3 ubiquitin-protein li 35.3 90 0.0031 21.1 5.3 41 120-162 6-46 (56)
52 3rnv_A HC-Pro, helper componen 26.3 15 0.00051 29.9 0.2 58 38-103 35-92 (158)
53 3k6g_A Telomeric repeat-bindin 24.8 1.5E+02 0.0053 22.5 5.5 44 119-162 8-53 (111)
54 1oqy_A HHR23A, UV excision rep 24.7 59 0.002 29.3 3.9 44 117-162 164-207 (368)
55 1pya_A Pyruvoyl-dependent hist 23.4 26 0.0009 25.4 1.0 16 2-17 19-34 (81)
56 2lnd_A De novo designed protei 22.2 1.3E+02 0.0046 22.1 4.7 61 20-87 36-106 (112)
57 4ae4_A Ubiquitin-associated pr 21.5 1.5E+02 0.005 22.5 5.0 37 122-160 9-45 (118)
No 1
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=132.35 Aligned_cols=52 Identities=33% Similarity=0.614 Sum_probs=48.7
Q ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC-CCCCC
Q psy15354 115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS-SFQNL 167 (218)
Q Consensus 115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr-~f~p~ 167 (218)
...++|+++||++|++||||||++.|+|||++ ||||++||||||+|+ +|.|.
T Consensus 7 ~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~-TgsVe~TienILeGr~~~~p~ 59 (61)
T 2ekf_A 7 GSPDVQLATLAQRVKEVLPHVPLGVIQRDLAK-TGCVDLTITNLLEGAVAFMPE 59 (61)
T ss_dssp CCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHT-SCCHHHHHHHHHSCCCCCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHcCCCCCCCC
Confidence 45789999999999999999999999999999 999999999999999 77775
No 2
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=126.75 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=45.2
Q ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
...++|+++||++|++||||||++.|+|||++ ||||++||||||+|+
T Consensus 7 ~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~-TgsVe~TienILeGr 53 (58)
T 2ejs_A 7 GASNSQLNAMAHQIQEMFPQVPYHLVLQDLQL-TRSVEITTDNILEGR 53 (58)
T ss_dssp SCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHH-HCSHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHhcC
Confidence 35789999999999999999999999999999 999999999999999
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=125.16 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
++|+++||++|++||||||.++|+|||++ ||||++||||||+|+
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~r-TgSVe~TienILeGr 57 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQL-TRSVEITTDNILEGR 57 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHH-HCCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHccc
Confidence 56999999999999999999999999999 899999999999997
No 4
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=99.07 E-value=1.1e-10 Score=70.54 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15354 192 SPHNRMSAFAEKKAQFIAEARRRAAT 217 (218)
Q Consensus 192 s~~eRq~sLqeRK~~MI~~ARrRyl~ 217 (218)
|++|||.+||+||++||++||+||++
T Consensus 2 s~~eRq~~Lq~Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 2 SADERQRMLVQRKDELLQQARKRFLN 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999996
No 5
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.6e-07 Score=67.32 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
....+...++++++|||+|....|.+.|+.+.|+|+.||+.||+-.
T Consensus 14 ~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 4455788999999999999999999999999999999999999743
No 6
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.92 E-value=2.6e-05 Score=56.35 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
..+...++.++.||+++||++...-|..=|....+|||.+|+.|||+.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 457889999999999999999999999999998999999999999996
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.76 E-value=5.1e-05 Score=52.81 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.+..++++++|||++....|..=|..+.|+||.||+.+|+-.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence 456789999999999999999999999999999999999975
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.63 E-value=6.4e-05 Score=50.64 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+.-+.+++||||.++...|.+=|..+.|+++.+|+-||++.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999999873
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.41 E-value=6.5e-05 Score=51.63 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
+....++++++|||++..+.|..=|..|.|++++||+.+|+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46678899999999999999999999999999999999985
No 10
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=96.52 E-value=0.0056 Score=41.26 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
+.++.|++.+++.-|++.|++.|+++.=+|...++|||+.
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 4688999999999999999999999777999999999975
No 11
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=93.79 E-value=0.17 Score=33.76 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 116 RYDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 116 ~~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
....+.+..++++.+| -+ +.+.++..|..+.|+|+.+++.|+++.
T Consensus 6 ~pe~~~~~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSM--GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CTHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567788999999999 47 899999999999999999999999874
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.59 E-value=0.26 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
...+.+..++++.+| -+ +.+.++..|..+.|+|+..++.|+.+
T Consensus 8 p~~~~~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTTHHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 455678889999999 57 99999999999889999999999975
No 13
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.39 E-value=0.35 Score=33.49 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+..++++.+| -++.+..+..|..+.++|+..++.|+++.
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4567888888 68999999999998899999999999987
No 14
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.04 E-value=0.39 Score=31.46 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.++..+..+.++.+| -++.+.++..|..+.|+|+..++.|++|.
T Consensus 4 ~~~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 4 TGSEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp CSHHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred CCccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 456778889999999 58999999999998899999999999984
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.30 E-value=0.42 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 119 SRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 119 ~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
.+.+..++++.+| -+ ....++..|..+.|+|+..++.|++|
T Consensus 5 ~~~~~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4567788999999 45 56778999999999999999999986
No 16
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.02 E-value=0.73 Score=35.29 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
++.++..|.+|.+| -.++.+.++..|..+.++++.+|+.||+|.
T Consensus 36 d~d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 36 DADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp CHHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 56789999999999 679999999999999999999999999998
No 17
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=89.09 E-value=0.59 Score=33.45 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
..+...+..|+++.+| -++.+.++..|..+.++|+..++.||+|.
T Consensus 24 ~~~~~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CCSCCCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cCCcccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4566778899999999 59999999999998899999999999986
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=88.82 E-value=0.78 Score=27.96 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHh
Q psy15354 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159 (218)
Q Consensus 120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL 159 (218)
+.+..++++.+| .++.+..+.-|..+.|+++..++.|+
T Consensus 3 ~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 456788999999 89999999999998889999998874
No 19
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.45 E-value=0.75 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
...+.+..++++.+| -+ .+..++..|..+.|+|+..|+.|+.|-
T Consensus 25 pe~~ye~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 25 TEGRYQQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp TTTTSHHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 455678889999999 35 678999999999999999999999984
No 20
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.26 E-value=0.9 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
...+.+..++++.+| -+ ....++..|..+.|+|+..++.|+.|
T Consensus 13 pe~~~~~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 13 PEERYEHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHTHHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 355678889999999 34 57788999999999999999999987
No 21
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.09 E-value=0.83 Score=30.63 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhCCCCC-HHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 119 SRMYAEAQRIREIFPNIP-LNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 119 ~~~~~m~~~V~~~fP~v~-~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.+.+..++++++| -++ ....+..|..+.|+|+..|+.|+.+.
T Consensus 7 ~~~~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 7 GHFQVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp CSSHHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3457778999999 464 45679999999999999999999874
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=86.72 E-value=1.4 Score=27.63 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
+..++++.+| -+|.+..+..|..+.++++..++.|++|
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4568888898 5899999999999888999999999987
No 23
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.81 E-value=3.6 Score=29.08 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccC-CHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHG-NAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~-sv~~T~~~iL~Gr 162 (218)
..+++++.+| -++....++.|..+.| +|+..++-||++.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 4567888888 6889999999999554 6999999999987
No 24
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.33 E-value=2 Score=29.29 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+..+.++.+| -++....+..|..+.++|+..++.|+++.
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4577888888 57899999999998889999999999975
No 25
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.20 E-value=1.6 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHH
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRL 158 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~i 158 (218)
.+.+.+++=||.||..+|-.=+..|.++.++-|.-+
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L 47 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVL 47 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHH
Confidence 578899999999999999999999999999987644
No 26
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=81.37 E-value=1.3 Score=35.91 Aligned_cols=45 Identities=22% Similarity=0.615 Sum_probs=32.5
Q ss_pred eEeccCc-------ccccCcccccccccc-------ccCCCCCCHHHHHHHHHHHHHHh
Q psy15354 39 IVLFPEE-------ETTNGKKGLLKFLPV-------MKRAQNETDEDLMSRIEACIACE 83 (218)
Q Consensus 39 lliFPEG-------t~TNg~~~Ll~FLP~-------~~~~~~E~~~~FA~rV~~~iA~~ 83 (218)
++|||.. .||||++++|+|.-. |.-...+.+++|+.+|..+|...
T Consensus 76 lIi~P~d~~F~kV~~c~tGRVyvLkF~ss~~r~FFWmQe~~~~~D~~~~~kvN~lL~~p 134 (153)
T 2r2y_A 76 LIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 134 (153)
T ss_dssp EECCTTSEEEEECTTCTTSCEEEEEETTTCCEEEEEECSSSSTTHHHHHHHHHHHHHC-
T ss_pred EEEcCCCeEEEECCCCCCCeEEEEEecCCCceEEEEecCCCcccHHHHHHHHHHHHcCC
Confidence 8889953 489999999999210 01113567789999999999863
No 27
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=80.96 E-value=3.2 Score=29.33 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
...+.++.+| -++....+..|..+.|+|+..++.|+++.
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4567888888 58999999999998999999999999875
No 28
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.59 E-value=3.5 Score=29.00 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
....++...++++++|= -......++.|..+.|+|+.+||.|+++.
T Consensus 14 ~pe~~y~~ql~qL~~MG-F~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 14 APEVRFSKEMECLQAMG-FVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp CHHHHTHHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHcC-CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34566778888999884 25677889999999999999999999987
No 29
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.36 E-value=5.3 Score=28.95 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
...++++.+| .++....+..|..+.++|+..++-|+++.
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4567888888 68899999999998889999999999986
No 30
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.27 E-value=4 Score=26.01 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
...+.++.+| -+|.......|.. +|+|+..++.|++.
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~-~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLN-TSTMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHH-SCSHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHH-cCCHHHHHHHHHcC
Confidence 4567788888 4777999999999 68999999999864
No 31
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.30 E-value=5.8 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhccC-CHHHHHHHHhcCC
Q psy15354 124 EAQRIREIFPNIPLNAIVRELGRSHG-NAELTISRLIADS 162 (218)
Q Consensus 124 m~~~V~~~fP~v~~~~I~~DL~~~t~-sv~~T~~~iL~Gr 162 (218)
.++++.+| -+|.+...+.|..+.+ +++..++-||++.
T Consensus 12 ~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 45777777 5889999999999444 7999999999997
No 32
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.89 E-value=6.3 Score=26.99 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccC-CHHHHHHHHhcCC
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHG-NAELTISRLIADS 162 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~-sv~~T~~~iL~Gr 162 (218)
..++++.+| -+|....+..|..+.| +|+..++-||++.
T Consensus 21 ~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 356788888 6899999999999665 8999999999874
No 33
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=70.69 E-value=2.4 Score=39.42 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=32.5
Q ss_pred eEeccCc-------ccccCccccccccc-------cccCCCCCCHHHHHHHHHHHHHH
Q psy15354 39 IVLFPEE-------ETTNGKKGLLKFLP-------VMKRAQNETDEDLMSRIEACIAC 82 (218)
Q Consensus 39 lliFPEG-------t~TNg~~~Ll~FLP-------~~~~~~~E~~~~FA~rV~~~iA~ 82 (218)
++|||.. .|+||++++|||.- =|.-...+.+++|+++|..+|..
T Consensus 77 lii~P~d~~f~~V~~c~tGRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~~vN~ll~~ 134 (411)
T 2kr0_A 77 LIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNN 134 (411)
T ss_dssp EEECTTSEEEEECTTCSSSCEEEEEETTTCCEEEEEECCSCGGGHHHHHHHHHHHHHS
T ss_pred eEEcCCceEEEECCCCCCCeEEEEEecCCCceeEEEecCCCcccHHHHHHHHHHHHhC
Confidence 8899963 59999999999921 00111245668999999999996
No 34
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=70.25 E-value=14 Score=26.71 Aligned_cols=39 Identities=5% Similarity=0.028 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhcc-CCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSH-GNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t-~sv~~T~~~iL~Gr 162 (218)
...+.++.+| -++....++.|..++ ++|+..++-||++.
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4567888888 689999999999944 58999999999986
No 35
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=69.77 E-value=3.6 Score=33.36 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=32.3
Q ss_pred CeEeccCc-------ccccCccccccc---------cccccCCC--------CCCHHHHHHHHHHHHHHh
Q psy15354 38 PIVLFPEE-------ETTNGKKGLLKF---------LPVMKRAQ--------NETDEDLMSRIEACIACE 83 (218)
Q Consensus 38 PlliFPEG-------t~TNg~~~Ll~F---------LP~~~~~~--------~E~~~~FA~rV~~~iA~~ 83 (218)
-++|||.. .|+||++++|+| |- .++. .+....+..+|..+|...
T Consensus 65 dlii~P~d~~f~~v~~c~tGRVyvLkFss~~r~fFWmQ--e~~~~~~~~~~~s~kD~~~~~~vn~lL~~~ 132 (156)
T 4b4t_X 65 SLILIPGETMWVPIKSSKSGRIFALVFSSNERYFFWLQ--EKNSGNLPLNELSAKDKEIYNKMIGVLNNS 132 (156)
T ss_dssp EECCCTTTSEEECCSSCSSCCEEEEECSSSCCEEEEEC--SSCSSSSSSCCCSSSSHHHHHHHHHHHHCC
T ss_pred ceEEcCCceEEEEcCCCCCcEEEEEEecCCCcEEEEee--cCCccCCcccccchhHHHHHHHHHHHhcCC
Confidence 48999976 799999999999 21 1111 134678999999998764
No 36
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.49 E-value=9.2 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+..+.++.+| .++...+++.|..+.|+|+..++.|+.+.
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5678888899 68999999999998888999999999943
No 37
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=67.96 E-value=6.9 Score=29.88 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
..+.+..++++++|= -...+.++..|..+.|+|+..||.|++|.
T Consensus 63 e~~~~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 63 GSQWQPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp CCTTHHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 345677888899984 13457899999999999999999999875
No 38
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.93 E-value=14 Score=26.82 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=39.0
Q ss_pred CCchHH-HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 116 RYDSRM-YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 116 ~~~~~~-~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.+++.+ ...+.++.+| -++....++.|..+.++++..++-|++..
T Consensus 15 ~~~~~~n~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 15 QDEAWIMSRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CCccccCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 345566 7889999999 68899999999887889999999999976
No 39
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=67.69 E-value=1.1 Score=41.00 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=16.3
Q ss_pred HHHhccCCCCeEeccCcccccC
Q psy15354 29 KSFLCRTEAPIVLFPEEETTNG 50 (218)
Q Consensus 29 k~~~~~~~~PlliFPEGt~TNg 50 (218)
.+.+...+.-|+||||||=+-+
T Consensus 216 ~~~Lk~GG~sI~IFPEGTRsR~ 237 (367)
T 1iuq_A 216 ALLLRGGSQLIWIAPSGGRDRP 237 (367)
T ss_dssp HHHHHHCCCEEEECTTCSCCCB
T ss_pred HHHHHcCCeEEEEeCCCCCCCC
Confidence 3445555678999999987764
No 40
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=63.99 E-value=20 Score=29.28 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCH-------HHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCCCHHHHHH
Q psy15354 70 EDLMSRIEACIACEGRLSPTLCTP-------SEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVR 142 (218)
Q Consensus 70 ~~FA~rV~~~iA~~Lgi~~t~~t~-------~dk~e~~kr~~~~~~~~~~~~~~~~~~~~~m~~~V~~~fP~v~~~~I~~ 142 (218)
.....-++.+|+.-= +..+... .|+.+|.++.+.-...-. +....+...+..|+++.+| .++.+.++.
T Consensus 108 ~~vL~~i~~ll~~p~--p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a-~~~~~~~~~eekV~~l~~M--Gf~~~~a~~ 182 (201)
T 3k9o_A 108 RTVLLSLQALLAAAE--PDDPQDAVVANQYKQNPEMFKQTARLWAHVYA-GAPVSSPEYTKKIENLCAM--GFDRNAVIV 182 (201)
T ss_dssp HHHHHHHHHHHHSCC--TTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHTT--TCCHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHc--CCCHHHHHH
Confidence 445566777777521 2233332 234444444433222110 1123466789999999999 999999999
Q ss_pred HHhhccCCHHHHHHHHhc
Q psy15354 143 ELGRSHGNAELTISRLIA 160 (218)
Q Consensus 143 DL~~~t~sv~~T~~~iL~ 160 (218)
.|....++++..++.||+
T Consensus 183 AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 183 ALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHhc
Confidence 999999999999999986
No 41
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.58 E-value=10 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhc-cCCHHHHHHHHhcCC
Q psy15354 124 EAQRIREIFPNIPLNAIVRELGRS-HGNAELTISRLIADS 162 (218)
Q Consensus 124 m~~~V~~~fP~v~~~~I~~DL~~~-t~sv~~T~~~iL~Gr 162 (218)
++.++.+| -++...++..|..+ .++|+..++-||++.
T Consensus 12 ~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 12 ALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 56777888 68899999999995 379999999999986
No 42
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=58.45 E-value=25 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.353 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHhCCC-CCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 117 YDSRMYAEAQRIREIFPN-IPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~-v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+..+|.+++++|++|+-. ||...++.-..++.=+|+..++.||+..
T Consensus 30 d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 30 DQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 455799999999999988 9999999999998999999999999754
No 43
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=57.85 E-value=17 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
-..++.++.+| -++...++..|..+.|+++..++.|+++-
T Consensus 78 ~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 78 PEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35577888888 68899999999998889999999999875
No 44
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.02 E-value=38 Score=22.74 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 119 SRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 119 ~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.+...+.++.++| =-...+.-..-|.++.|||+.+|+.||.+.
T Consensus 7 e~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 7 GQTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp TTHHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4455577888888 223566667779999999999999999764
No 45
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=52.62 E-value=42 Score=28.77 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCH-------HHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCCCHHHHHH
Q psy15354 70 EDLMSRIEACIACEGRLSPTLCTP-------SEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVR 142 (218)
Q Consensus 70 ~~FA~rV~~~iA~~Lgi~~t~~t~-------~dk~e~~kr~~~~~~~~~~~~~~~~~~~~~m~~~V~~~fP~v~~~~I~~ 142 (218)
.....-|+.+|+.-= +..+... .|+.+|.++.+.-...-. +....+..++..|+++.+| .++.+.++.
T Consensus 160 ~~vL~sI~~ll~~pn--p~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA-~~~~~~~~~~~~v~~l~~m--gf~~~~~~~ 234 (253)
T 3e46_A 160 RTVLLSLQALLAAAE--PDDPQDAVVANQYKQNPEMFKQTARLWAHVYA-GAPVSSPEYTKKIENLCAA--GFDRNAVIV 234 (253)
T ss_dssp HHHHHHHHHHHHSCC--TTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH-CCSCCCHHHHHHHHHHHHT--TCCHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc-ccccCcchHHHHHHHHHHc--CCCHHHHHH
Confidence 445566777777521 2223332 234444444433222110 1123466889999999999 999999999
Q ss_pred HHhhccCCHHHHHHHHhc
Q psy15354 143 ELGRSHGNAELTISRLIA 160 (218)
Q Consensus 143 DL~~~t~sv~~T~~~iL~ 160 (218)
-|++..++++..++.||.
T Consensus 235 al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 235 ALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHhc
Confidence 999999999999999986
No 46
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=51.31 E-value=36 Score=22.22 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354 119 SRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD 161 (218)
Q Consensus 119 ~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G 161 (218)
+|++.-+..+-+| -++.+.+.+.|....++|+..++.++|-
T Consensus 2 ~~~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 2 SQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp CHHHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 4666666666655 5789999999999999999999999873
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=44.91 E-value=15 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 124 EAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 124 m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
.|+++.+| -++....++-|....++++.+.+-|+++-
T Consensus 7 aI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 7 AIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp HHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 45666677 68999999999998999999999999864
No 48
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=42.79 E-value=30 Score=22.00 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhh
Q psy15354 121 MYAEAQRIREIFPNIPLNAIVRELGR 146 (218)
Q Consensus 121 ~~~m~~~V~~~fP~v~~~~I~~DL~~ 146 (218)
...+++.+++-.|.|+...|.+||..
T Consensus 22 ~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 22 QDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 67788888888999999999999985
No 49
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.62 E-value=30 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
.-|.++-+| -++++.+++.|....|+|+..++.+||
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444444444 688999999999999999999998886
No 50
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.98 E-value=35 Score=22.91 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 125 AQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 125 ~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+.++-+| -++++.+++.|....|+|+...+.++|-.
T Consensus 13 I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 13 IERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4444444 57899999999999999999999998743
No 51
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=35.33 E-value=90 Score=21.12 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+.+.-+.++-+| -++++.+++.|....++|+..++.+||=.
T Consensus 6 p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 6 QLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred CChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555555554 68999999999999999999999999844
No 52
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=26.27 E-value=15 Score=29.93 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=42.0
Q ss_pred CeEeccCcccccCccccccccccccCCCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHHHHH
Q psy15354 38 PIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL 103 (218)
Q Consensus 38 PlliFPEGt~TNg~~~Ll~FLP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~kr~ 103 (218)
-+.|+.||.| ++--||+-+-.-.++++..|.+.|+..+...||-=. |..|.+-....+
T Consensus 35 ~~yiak~GYC-----YinIFlaMl~nV~e~~ak~Ftk~Vrd~~v~~LG~WP---t~~dvatac~~l 92 (158)
T 3rnv_A 35 KMYIAKEGYC-----YINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWP---TLLDVATACYFL 92 (158)
T ss_dssp -CCCCCTTCT-----THHHHHHHGGGSCGGGHHHHHHHHHHTHHHHHCSSC---BHHHHHHHHHHH
T ss_pred CEEEeeCCcH-----HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHH
Confidence 5788888888 677776555555577888999999999999999433 556655554444
No 53
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=24.78 E-value=1.5e+02 Score=22.49 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhC--CCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 119 SRMYAEAQRIREIF--PNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 119 ~~~~~m~~~V~~~f--P~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
+..-..++.|+++. ..+.+..+-+.|.+|.|.+++|..-++.|.
T Consensus 8 ~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 8 PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 34444455555443 456888999999999999999999999985
No 54
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=24.67 E-value=59 Score=29.34 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354 117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162 (218)
Q Consensus 117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr 162 (218)
..+..+.+|.++.+|= ++++.+.+.|..+.++++..++.|++|.
T Consensus 164 ~g~~~~~~i~~l~~MG--f~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMG--YERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp CTTTHHHHHHHHHTTT--CCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred CCcchHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3456899999999994 9999999999999999999999999997
No 55
>1pya_A Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_A 1ibv_A* 1ibu_A 1ibt_A* 1ibw_A*
Probab=23.45 E-value=26 Score=25.41 Aligned_cols=16 Identities=13% Similarity=-0.057 Sum_probs=12.7
Q ss_pred CCCCccccceecCCCC
Q psy15354 2 EGGGECLGLINLGRNT 17 (218)
Q Consensus 2 ~~~~~~~g~~~~g~~~ 17 (218)
.+..||.||++-|+.+
T Consensus 19 p~~~~c~GY~~pGa~G 34 (81)
T 1pya_A 19 PYKQWTRGYMEPGNIG 34 (81)
T ss_dssp SSSSCBEETTCTTCBS
T ss_pred CchhhccccCCCCccc
Confidence 3568999999988754
No 56
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.20 E-value=1.3e+02 Score=22.10 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc----------cccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy15354 20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF----------LPVMKRAQNETDEDLMSRIEACIACEGRLS 87 (218)
Q Consensus 20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F----------LP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~ 87 (218)
+-..+.+-||.. .+++.||++|--|..-|.- -.| ..++ ..-+|+++..||+.-+-.+..+.
T Consensus 36 ssqdirdiiksm-kdngkplvvfvngasqndv---nefqneakkegvsydvl---kstdpeeltqrvreflktagsle 106 (112)
T 2lnd_A 36 SSQDIRDIIKSM-KDNGKPLVVFVNGASQNDV---NEFQNEAKKEGVSYDVL---KSTDPEELTQRVREFLKTAGSLE 106 (112)
T ss_dssp SHHHHHHHHHHH-TTCCSCEEEEECSCCHHHH---HHHHHHHHHHTCEEEEE---ECCCHHHHHHHHHHHHHHTTSCC
T ss_pred chhhHHHHHHHH-HhcCCeEEEEecCcccccH---HHHHHHHHhcCcchhhh---ccCCHHHHHHHHHHHHHhcccch
Confidence 444444444443 6677999999988776642 223 1111 24688999999999888776654
No 57
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=21.48 E-value=1.5e+02 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354 122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160 (218)
Q Consensus 122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~ 160 (218)
..++.++.+| -+|...+.+.|+.++++++..++-|++
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHH
Done!