RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15354
         (218 letters)



>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex
           subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 28.5 bits (64), Expect = 0.100
 Identities = 6/43 (13%), Positives = 21/43 (48%)

Query: 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162
            + +   +++++ P++    I+  L   H + E  I+ ++ + 
Sbjct: 5   ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 47


>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 59

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 126 QRIREIFPNIPLNAIVRELGRSHGNAELTISRL--IADSSFQNLS 168
           + I+++FPN+    I   L    GN +  I+ L  + +      S
Sbjct: 14  KAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58


>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 28.2 bits (61), Expect = 0.65
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 69  DEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL-VRALA-TQNSGARRYDSRMYAEAQ 126
             +L+      +    R         E  E  K   V+ +     S   RY  ++ +  +
Sbjct: 201 GTELLIHECTFLDARDRRYKNHAAIDEVMESVKAAGVKKVILYHIS--TRYIRQLKSVIK 258

Query: 127 RIREIFPNIPL 137
           + RE  P++ +
Sbjct: 259 KYREEMPDVEI 269


>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
           {Escherichia coli [TaxId: 562]}
          Length = 103

 Score = 27.1 bits (59), Expect = 0.66
 Identities = 9/81 (11%), Positives = 20/81 (24%)

Query: 127 RIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQSPSPSSPST 186
            +  I   +P N    ++  +   A   + +    + F  L+   S+             
Sbjct: 4   NLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWG 63

Query: 187 PQFNASPHNRMSAFAEKKAQF 207
                      +    KK   
Sbjct: 64  RIQELPGIFAQALSTAKKGDI 84


>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein
           vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 54

 Score = 24.3 bits (53), Expect = 3.0
 Identities = 5/48 (10%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 114 ARRYDSRMYAEA-QRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA 160
            ++ +     +    ++ +FP++  + I           E  +  L++
Sbjct: 4   IKKIEENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS 51


>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
           {Escherichia coli [TaxId: 562]}
          Length = 405

 Score = 25.6 bits (55), Expect = 4.8
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 188 QFNASPHNRMSAFAEKKAQFIAEARRRAATL 218
              A+ H  +   + +  + +   R+RA+  
Sbjct: 48  HGYAAVHRGIHTLSAQATEKMENVRKRASLF 78


>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
           {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 408

 Score = 25.3 bits (54), Expect = 6.9
 Identities = 5/31 (16%), Positives = 9/31 (29%)

Query: 188 QFNASPHNRMSAFAEKKAQFIAEARRRAATL 218
             NA+ H      + +        R + A  
Sbjct: 48  NDNANVHRGAHQLSVRATDAYEAVRNKVAKF 78


>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487
          {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 179

 Score = 24.3 bits (53), Expect = 9.5
 Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 3/32 (9%)

Query: 67 ETDEDLMSRIEA--CIACEG-RLSPTLCTPSE 95
          ET+E +  R+ A      E       L    E
Sbjct: 34 ETEERMTVRLLAYAFWYNEQLAFGRGLSDVDE 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,937
Number of extensions: 32727
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)