BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15359
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GW3|A Chain A, Human Urod Mutant K297n
Length = 367
Score = 332 bits (851), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|3GW0|A Chain A, Urod Mutant G318r
Length = 367
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase
pdb|1R3Q|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-I
pdb|1R3Y|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-Iii
pdb|3GVQ|A Chain A, Urod Single-Chain Dimer
pdb|3GVR|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
Length = 367
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
pdb|3GVW|A Chain A, Single-Chain Urod F217y (Yf) Mutation
Length = 367
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQL+ES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLYESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex
With Coproporphyrinogen-Iii
Length = 367
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM++M+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTFMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In
Complex With Coproporphyrinogen-I
Length = 367
Score = 330 bits (846), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFS+ILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSEILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 330 bits (846), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 32 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 91
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 92 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 151
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 152 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 211
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 212 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 271
Query: 251 MN-NDVPMTIFAK 262
VPM FAK
Sbjct: 272 AGLAPVPMITFAK 284
>pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n
Length = 367
Score = 330 bits (846), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFS+ILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSNILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-I
pdb|1R3T|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-Iii
Length = 367
Score = 329 bits (844), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 11 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFS ILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 71 QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 32 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 91
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 92 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 151
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 152 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 211
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF + ALPYI + ++VKA+L++
Sbjct: 212 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKLALPYIRDVAKQVKARLRE 271
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 272 AGLAPVPMIIFAK 284
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 32 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 91
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 92 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 151
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+ APWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 152 LGYVFQAITLTRQRLAGRVPLIGFADAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 211
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 212 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 271
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 272 AGLAPVPMIIFAK 284
>pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme
In Complex With Coproporphyrinogen-Iii
pdb|2Q6Z|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Apo-
Enzyme
Length = 356
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/253 (62%), Positives = 193/253 (76%), Gaps = 1/253 (0%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 60
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RRF LDA+IIFSDILV+PQALGM V M P GP PEPL +DL++L+ P V E
Sbjct: 61 QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+E GGS TM+++K WLY+ P+ S +
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVERGGSSTMAQAKRWLYQRPQASHQ 180
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI + ++VKA+L++
Sbjct: 181 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240
Query: 251 MN-NDVPMTIFAK 262
VPM IFAK
Sbjct: 241 AGLAPVPMIIFAK 253
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Shigella Flexineri: New Insights Into Its Catalytic
Mechanism
Length = 354
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 161/253 (63%), Gaps = 6/253 (2%)
Query: 14 LKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQP 72
LKNDR LRA + VD P+W+MRQAGRYLPE++ R++ DF ++C+ ELA E+TLQP
Sbjct: 4 LKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQP 63
Query: 73 IRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELN 132
+RR+ LDA+I+FSDIL +P A+G+ + + GP P+ D+ KL P D EL
Sbjct: 64 LRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIP-DPEDELG 122
Query: 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 192
YV A+ RH+L+G+VPLIGFSG+PWTL +YM+EGG SK + K +Y P+ LL
Sbjct: 123 YVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALL 182
Query: 193 EILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMN 252
+ L + YL Q KAGAQ + +F++ L +++F+L Y++ I V L++ +
Sbjct: 183 DKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKI---VDGLLREND 239
Query: 253 N-DVPMTIFAKGA 264
VP+T+F KG
Sbjct: 240 GRRVPVTLFTKGG 252
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 148/259 (57%), Gaps = 13/259 (5%)
Query: 14 LKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQP 72
L ND LRA E D PIW+MRQAGRYLPE+ R++ F + + P+ A E+TLQP
Sbjct: 9 LINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQP 68
Query: 73 IRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELN 132
+ RF LDA+I+FSDIL IP A+G+ ++ GP P+ D+ KL P D+ L
Sbjct: 69 LERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVP-DIGATLG 127
Query: 133 YVFEAITLTRHKL---EGK--VPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEE 187
YV +A+ R L EG+ VPLIGFSG+PWTL YM+EGGGS K Y P+
Sbjct: 128 YVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDL 187
Query: 188 SKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQ 247
++L++ + YL Q +AGAQ + +F++ L ++ F+L YI +V AQ
Sbjct: 188 MHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYI----RRVVAQ 243
Query: 248 LKQMNND--VPMTIFAKGA 264
LK+ ++ VP F KG
Sbjct: 244 LKREHDGARVPAIAFTKGG 262
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
pdb|2EJA|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
Length = 338
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 165/268 (61%), Gaps = 13/268 (4%)
Query: 15 KNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQPI 73
KND LLR+ RGE + + P+W+MRQAGRY+PE+R++R++ +F +C+ +LA EI+L P+
Sbjct: 3 KNDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPL 62
Query: 74 RRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
+ +DA IIFSDILV + LG+ VE GP L + DLKK + Y
Sbjct: 63 KILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSGKV-SDLKKYDPSQNAY----- 116
Query: 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLE 193
V+E I + + +VP+IGF+GAP+TL+SY+IEGG SK +K ++++ P+E K+L++
Sbjct: 117 VYEIIKRVKEA-QDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMD 175
Query: 194 ILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNN 253
ILT ++ YL Q KAGA ++Q+F+S L L+ + E+ PY+N + ++LK +
Sbjct: 176 ILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYL----ISELKDF-S 230
Query: 254 DVPMTIFAKGAPKQGHNCYNYSNPMLST 281
D P+ F +G+ +Y LS
Sbjct: 231 DTPVIYFFRGSSSFIDLAVDYRADALSV 258
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 156/249 (62%), Gaps = 8/249 (3%)
Query: 16 NDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRR 75
N+ L+AARGE+ D P+W MRQAGR PE+R+L+ K+ F I PEL A +T P+ +
Sbjct: 14 NETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYVTRLPVEQ 73
Query: 76 FNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVF 135
+ +DA+I++ DI+ ++G+ VE+K +GPV+ +P+ D++KL +D +++ YV
Sbjct: 74 YGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQ-IDPEQDVPYVL 132
Query: 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEIL 195
E I L ++ + VPLIGFSGAP+TL SYM EGG SK +K+K ++Y P+ L+ L
Sbjct: 133 ETIKLLVNE-QLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKL 191
Query: 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDV 255
++I+ Y+ Q KAGA+ +Q+F+S L+ ++ + P +N I ++ + +V
Sbjct: 192 ADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE------NV 245
Query: 256 PMTIFAKGA 264
P+ +F GA
Sbjct: 246 PLIMFGVGA 254
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 146/247 (59%), Gaps = 6/247 (2%)
Query: 19 LLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFF-TICQTPELAAEITLQPIRRFN 77
LL A RG+EV++ P+W+MRQAGRY+ ++ L K+ F + +L EI+LQP + F
Sbjct: 15 LLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFR 74
Query: 78 LDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEA 137
D I+FSDIL + + ++ GPV+ +PL D++K++ + K + YV EA
Sbjct: 75 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIP-EKSVPYVGEA 133
Query: 138 ITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+T+ R ++ + ++GF GAP+TL SY++EGG SK +K K + P+ LL+
Sbjct: 134 LTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFAT 193
Query: 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM 257
+ Y+ QA +GAQ +Q+F+S A L F+EF+LPY+ I + VK + ++P+
Sbjct: 194 SMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKL----THPNLPL 249
Query: 258 TIFAKGA 264
++A G+
Sbjct: 250 ILYASGS 256
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei
pdb|4AY7|B Chain B, Methyltransferase From Methanosarcina Mazei
Length = 348
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 124/272 (45%), Gaps = 42/272 (15%)
Query: 18 RLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFN 77
RLL A +GE VDK+P+ + Q G + E ++ + PEL A++ L
Sbjct: 18 RLLAALKGEPVDKVPVCSVTQTG--IVELMDVVGAP-WPEAHTNPELMAKLALANHELSG 74
Query: 78 LDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVI----PEDLKKLKTPVDVYK--EL 131
L+A + + V+ +A+G + M G +P V P+DL+ P D+ + +
Sbjct: 75 LEAVRLPYXLTVLVEAMGCEINM----GTKNRQPSVTGHPYPKDLEGAAVPADLLQRGRI 130
Query: 132 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKL 191
V EAI + R K+ VP++G P T+ S ++ ++ W K + ++
Sbjct: 131 PVVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLV------SVKSFMKWSIKKTDLLEQA 184
Query: 192 LEILTNVIVDYLVGQAKAGAQLLQLFE--SNAEYLDLDLFKEFALPYINTINEKVKAQLK 249
L+I T + Y +AGA ++ + + ++ + + D F++F +K++L+
Sbjct: 185 LDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQF-----------LKSRLQ 233
Query: 250 QMNNDV-PMTIFAKGAPKQGHNCYNYSNPMLS 280
+ + V +T+ H C N NP+LS
Sbjct: 234 KFASSVNSVTVL--------HICGNV-NPILS 256
>pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei
pdb|4AY8|B Chain B, Semet-Derivative Of A Methyltransferase From M. Mazei
Length = 348
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 42/272 (15%)
Query: 18 RLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFN 77
RLL A +GE VDK+P+ + Q G + E ++ + PEL A++ L
Sbjct: 18 RLLAALKGEPVDKVPVCSVTQTG--IVELXDVVGAP-WPEAHTNPELXAKLALANHELSG 74
Query: 78 LDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVI----PEDLKKLKTPVDVYK--EL 131
L+A + + V+ +A G + G +P V P+DL+ P D+ + +
Sbjct: 75 LEAVRLPYXLTVLVEAXGCEINX----GTKNRQPSVTGHPYPKDLEGAAVPADLLQRGRI 130
Query: 132 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKL 191
V EAI + R K+ VP++G P T+ S ++ ++ W K + ++
Sbjct: 131 PVVLEAIKIIREKVGPDVPIVGGXEGPVTVASDLV------SVKSFXKWSIKKTDLLEQA 184
Query: 192 LEILTNVIVDYLVGQAKAGAQLLQLFE--SNAEYLDLDLFKEFALPYINTINEKVKAQLK 249
L+I T + Y +AGA ++ + + ++ + D F++F +K++L+
Sbjct: 185 LDIATEASIIYANAXVEAGADVIAIADPVASPDLXSPDSFRQF-----------LKSRLQ 233
Query: 250 QMNNDV-PMTIFAKGAPKQGHNCYNYSNPMLS 280
+ + V +T+ H C N NP+LS
Sbjct: 234 KFASSVNSVTVL--------HICGNV-NPILS 256
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 207 AKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNND 254
A GA+ L++ +S A+YL LD+ +P I + V++ KQ+ D
Sbjct: 17 ANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 207 AKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNND 254
A GA+ L+ +S A+YL LD+ +P I + V++ KQ+ D
Sbjct: 18 ANLGAECLRXLDSGADYLHLDVXDGHFVPNITFGHPVVESLRKQLGQD 65
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 108 LPEPLVIPEDLKKLKTPV-DVYKELNYVFEAITLTRHKLEGKVP--LIGFSGAPWTLMSY 164
LP + I D ++ + D Y + +F ++T++R++L GK+P + A L
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 165 MIEGGGSKTMSKSKH 179
M+EG S K+
Sbjct: 208 MLEGDASVLFGSDKN 222
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 87 ILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLK 122
ILV P G V E+KPA + EP+V+ ED +LK
Sbjct: 147 ILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELK 182
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 87 ILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLK 122
ILV P G V E+KPA + EP+V+ ED +LK
Sbjct: 147 ILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,416,565
Number of Sequences: 62578
Number of extensions: 352515
Number of successful extensions: 867
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 28
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)