Query psy15359
Match_columns 281
No_of_seqs 161 out of 1161
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:52:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00115 hemE uroporphyrinogen 100.0 2.1E-54 4.6E-59 393.5 28.7 263 12-280 1-265 (346)
2 PLN02433 uroporphyrinogen deca 100.0 4E-53 8.8E-58 384.7 27.3 257 19-280 1-258 (345)
3 TIGR01464 hemE uroporphyrinoge 100.0 5.1E-52 1.1E-56 377.1 27.8 257 18-280 1-259 (338)
4 cd00717 URO-D Uroporphyrinogen 100.0 3.9E-51 8.5E-56 370.9 26.8 254 21-280 2-256 (335)
5 PF01208 URO-D: Uroporphyrinog 100.0 9.2E-51 2E-55 369.7 22.4 256 15-280 2-261 (343)
6 COG0407 HemE Uroporphyrinogen- 100.0 1.4E-49 3E-54 355.4 26.3 262 14-280 5-268 (352)
7 TIGR01463 mtaA_cmuA methyltran 100.0 1E-48 2.3E-53 355.7 25.6 253 10-280 2-260 (340)
8 PRK06252 methylcobalamin:coenz 100.0 1.5E-48 3.3E-53 354.5 24.6 252 9-280 1-258 (339)
9 cd03307 Mta_CmuA_like MtaA_Cmu 100.0 8.5E-47 1.9E-51 341.2 24.1 242 21-280 2-249 (326)
10 KOG2872|consensus 100.0 1E-46 2.2E-51 318.7 15.2 269 11-280 7-277 (359)
11 cd03465 URO-D_like The URO-D _ 100.0 1.6E-43 3.6E-48 320.3 25.4 242 21-280 2-248 (330)
12 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 1E-42 2.2E-47 319.7 21.9 247 13-277 3-292 (378)
13 cd00465 URO-D_CIMS_like The UR 100.0 7.2E-30 1.6E-34 228.8 19.2 220 32-280 1-226 (306)
14 cd03309 CmuC_like CmuC_like. P 99.9 2.3E-23 5E-28 186.9 17.0 121 149-280 113-239 (321)
15 PRK04326 methionine synthase; 99.2 2.3E-11 4.9E-16 110.4 8.2 174 65-280 47-235 (330)
16 cd03310 CIMS_like CIMS - Cobal 99.0 6.2E-09 1.4E-13 94.0 11.2 125 133-280 100-226 (321)
17 PRK00957 methionine synthase; 98.7 7E-08 1.5E-12 86.6 9.5 110 146-280 105-217 (305)
18 cd03311 CIMS_C_terminal_like C 98.3 6.7E-07 1.4E-11 81.2 5.3 114 149-279 119-245 (332)
19 PRK06233 hypothetical protein; 96.3 0.029 6.4E-07 51.8 9.4 117 135-266 120-249 (372)
20 PRK01207 methionine synthase; 96.1 0.056 1.2E-06 49.2 10.2 117 135-279 107-233 (343)
21 PRK08575 5-methyltetrahydropte 95.9 0.067 1.5E-06 48.5 9.8 105 149-279 128-237 (326)
22 PRK09121 5-methyltetrahydropte 95.9 0.09 1.9E-06 48.0 10.6 103 135-265 111-215 (339)
23 PRK06520 5-methyltetrahydropte 95.8 0.092 2E-06 48.4 10.3 83 135-228 119-202 (368)
24 PRK06052 5-methyltetrahydropte 95.7 0.11 2.3E-06 47.0 10.0 76 134-222 96-171 (344)
25 cd03312 CIMS_N_terminal_like C 95.1 0.24 5.1E-06 45.6 10.5 121 133-279 135-258 (360)
26 PLN02475 5-methyltetrahydropte 94.8 0.18 3.9E-06 50.9 9.5 121 134-278 137-263 (766)
27 TIGR01371 met_syn_B12ind 5-met 94.7 0.25 5.3E-06 49.9 10.1 125 135-280 530-659 (750)
28 TIGR01371 met_syn_B12ind 5-met 94.6 0.19 4.2E-06 50.6 9.2 121 133-279 131-254 (750)
29 PLN02475 5-methyltetrahydropte 94.1 0.46 1E-05 48.0 10.7 110 148-279 552-669 (766)
30 PRK05222 5-methyltetrahydropte 93.9 0.29 6.3E-06 49.5 8.8 120 136-279 537-664 (758)
31 PF01717 Meth_synt_2: Cobalami 92.1 0.86 1.9E-05 41.1 8.5 110 149-278 121-236 (324)
32 COG0620 MetE Methionine syntha 91.8 0.65 1.4E-05 42.2 7.3 115 139-277 117-237 (330)
33 PRK05222 5-methyltetrahydropte 91.2 2.2 4.8E-05 43.2 11.0 120 133-278 137-259 (758)
34 COG5016 Pyruvate/oxaloacetate 89.6 1.7 3.6E-05 40.3 7.6 57 197-267 156-212 (472)
35 PRK12330 oxaloacetate decarbox 87.1 2.8 6.1E-05 40.2 7.9 59 195-266 153-212 (499)
36 cd07938 DRE_TIM_HMGL 3-hydroxy 86.4 3.6 7.7E-05 36.4 7.7 57 197-266 149-205 (274)
37 PF00682 HMGL-like: HMGL-like 86.1 3.8 8.2E-05 35.0 7.7 56 198-266 138-193 (237)
38 PRK05692 hydroxymethylglutaryl 85.5 3.3 7.2E-05 36.8 7.1 57 197-266 155-211 (287)
39 cd00951 KDGDH 5-dehydro-4-deox 85.3 3.2 7E-05 36.8 7.0 56 199-265 23-80 (289)
40 PRK12331 oxaloacetate decarbox 84.5 4.6 0.0001 38.3 7.9 56 197-266 154-209 (448)
41 cd07945 DRE_TIM_CMS Leptospira 84.2 5.3 0.00011 35.4 7.8 56 198-266 148-203 (280)
42 cd03174 DRE_TIM_metallolyase D 83.3 5.3 0.00012 34.5 7.4 55 199-266 148-202 (265)
43 cd07943 DRE_TIM_HOA 4-hydroxy- 83.1 6.3 0.00014 34.4 7.8 57 197-266 141-197 (263)
44 PRK14041 oxaloacetate decarbox 83.0 5.4 0.00012 38.0 7.7 57 196-266 152-208 (467)
45 PRK03620 5-dehydro-4-deoxygluc 82.7 4.3 9.4E-05 36.3 6.7 55 200-265 31-87 (303)
46 PRK12581 oxaloacetate decarbox 82.4 6.1 0.00013 37.6 7.8 58 195-266 161-218 (468)
47 COG0329 DapA Dihydrodipicolina 81.9 5.8 0.00013 35.5 7.2 58 198-266 26-85 (299)
48 TIGR00674 dapA dihydrodipicoli 81.7 5.4 0.00012 35.3 6.9 58 198-266 20-79 (285)
49 PLN02801 beta-amylase 81.6 2 4.3E-05 40.9 4.2 54 201-264 41-101 (517)
50 PRK14042 pyruvate carboxylase 81.1 6.6 0.00014 38.6 7.8 57 196-266 153-209 (596)
51 cd00952 CHBPH_aldolase Trans-o 81.0 6.1 0.00013 35.5 7.0 57 199-266 31-89 (309)
52 PRK03170 dihydrodipicolinate s 80.8 5.7 0.00012 35.3 6.8 58 198-266 23-82 (292)
53 cd07941 DRE_TIM_LeuA3 Desulfob 80.8 8.5 0.00018 33.9 7.8 56 198-266 152-207 (273)
54 TIGR01108 oadA oxaloacetate de 80.1 7.4 0.00016 38.3 7.7 56 197-266 149-204 (582)
55 PLN02905 beta-amylase 79.4 2.3 5E-05 41.4 3.9 54 201-264 290-350 (702)
56 PRK09282 pyruvate carboxylase 79.3 8 0.00017 38.1 7.7 57 196-266 153-209 (592)
57 PF07745 Glyco_hydro_53: Glyco 79.0 9.6 0.00021 34.7 7.6 73 188-265 101-180 (332)
58 cd07937 DRE_TIM_PC_TC_5S Pyruv 78.9 10 0.00023 33.4 7.7 56 197-266 149-204 (275)
59 cd07944 DRE_TIM_HOA_like 4-hyd 78.7 11 0.00023 33.1 7.7 57 197-266 138-195 (266)
60 PLN02746 hydroxymethylglutaryl 78.5 10 0.00022 34.7 7.7 57 197-266 197-253 (347)
61 cd00408 DHDPS-like Dihydrodipi 78.3 8.5 0.00018 33.8 7.0 59 197-266 18-78 (281)
62 PLN02705 beta-amylase 77.2 2.6 5.5E-05 41.0 3.5 54 201-264 272-332 (681)
63 cd07939 DRE_TIM_NifV Streptomy 76.6 14 0.00029 32.3 7.7 56 197-266 139-194 (259)
64 PRK14040 oxaloacetate decarbox 76.2 11 0.00024 37.1 7.7 57 196-266 154-210 (593)
65 TIGR03217 4OH_2_O_val_ald 4-hy 75.6 13 0.00028 33.8 7.6 57 197-266 143-200 (333)
66 PLN02803 beta-amylase 75.4 3 6.4E-05 40.0 3.3 54 201-264 111-171 (548)
67 cd00950 DHDPS Dihydrodipicolin 74.7 10 0.00022 33.4 6.6 58 198-266 22-81 (284)
68 PF00701 DHDPS: Dihydrodipicol 74.4 12 0.00027 33.0 7.0 59 197-266 22-82 (289)
69 PLN00197 beta-amylase; Provisi 74.1 3.3 7.1E-05 39.9 3.3 54 201-264 131-191 (573)
70 cd07940 DRE_TIM_IPMS 2-isoprop 73.5 17 0.00037 31.8 7.6 58 198-266 144-201 (268)
71 TIGR00683 nanA N-acetylneurami 73.4 14 0.0003 32.9 7.0 58 197-265 21-81 (290)
72 PLN02161 beta-amylase 73.1 3.6 7.8E-05 39.2 3.3 54 201-264 121-181 (531)
73 PRK08195 4-hyroxy-2-oxovalerat 72.7 14 0.0003 33.7 7.0 57 197-266 144-201 (337)
74 TIGR03249 KdgD 5-dehydro-4-deo 72.2 14 0.0003 32.9 6.8 54 200-264 29-84 (296)
75 TIGR02660 nifV_homocitr homoci 72.0 18 0.00039 33.3 7.7 56 197-266 142-197 (365)
76 cd07948 DRE_TIM_HCS Saccharomy 72.0 21 0.00045 31.3 7.7 55 198-266 142-196 (262)
77 TIGR02313 HpaI-NOT-DapA 2,4-di 71.3 15 0.00033 32.7 6.8 57 199-266 23-81 (294)
78 TIGR01235 pyruv_carbox pyruvat 70.4 17 0.00038 38.7 7.9 57 196-266 688-744 (1143)
79 PLN02417 dihydrodipicolinate s 69.8 18 0.0004 31.9 7.0 57 199-266 24-82 (280)
80 PRK12999 pyruvate carboxylase; 67.8 21 0.00045 38.1 7.9 57 196-266 690-746 (1146)
81 PRK12344 putative alpha-isopro 67.4 22 0.00048 34.5 7.5 56 197-266 158-213 (524)
82 cd02940 DHPD_FMN Dihydropyrimi 67.0 20 0.00042 32.0 6.6 42 179-220 147-203 (299)
83 PF01261 AP_endonuc_2: Xylose 66.4 69 0.0015 25.9 10.0 63 198-266 72-137 (213)
84 PRK04452 acetyl-CoA decarbonyl 66.0 30 0.00065 31.3 7.5 67 185-264 63-134 (319)
85 TIGR00977 LeuA_rel 2-isopropyl 65.2 28 0.00061 33.8 7.7 57 197-266 154-210 (526)
86 PRK11858 aksA trans-homoaconit 64.7 28 0.00062 32.2 7.4 56 197-266 145-200 (378)
87 TIGR02090 LEU1_arch isopropylm 64.1 29 0.00063 31.9 7.3 56 197-266 141-196 (363)
88 PLN03228 methylthioalkylmalate 63.3 30 0.00065 33.4 7.4 60 197-266 239-298 (503)
89 PRK09389 (R)-citramalate synth 62.7 33 0.00071 33.0 7.6 56 197-266 143-198 (488)
90 COG2513 PrpB PEP phosphonomuta 62.5 15 0.00032 32.6 4.8 35 196-234 165-199 (289)
91 COG0329 DapA Dihydrodipicolina 61.3 97 0.0021 27.7 10.0 69 136-244 61-129 (299)
92 KOG2335|consensus 61.0 62 0.0013 29.7 8.5 109 133-269 87-216 (358)
93 cd00377 ICL_PEPM Members of th 60.9 18 0.0004 31.3 5.1 63 195-278 158-222 (243)
94 PRK04147 N-acetylneuraminate l 60.2 33 0.00071 30.4 6.8 56 198-264 25-83 (293)
95 TIGR01496 DHPS dihydropteroate 60.2 35 0.00076 29.8 6.8 45 197-241 23-71 (257)
96 TIGR01769 GGGP geranylgeranylg 59.6 36 0.00078 28.7 6.5 60 183-266 5-64 (205)
97 PRK13753 dihydropteroate synth 59.4 39 0.00084 30.0 6.9 46 197-242 25-74 (279)
98 cd00954 NAL N-Acetylneuraminic 58.9 35 0.00075 30.2 6.7 56 198-264 22-80 (288)
99 TIGR00973 leuA_bact 2-isopropy 57.0 33 0.00072 33.0 6.6 60 197-266 146-205 (494)
100 PF10126 Nit_Regul_Hom: Unchar 56.7 26 0.00055 26.3 4.4 48 199-248 16-64 (110)
101 TIGR00677 fadh2_euk methylenet 56.2 85 0.0018 27.8 8.6 82 136-218 178-261 (281)
102 TIGR00381 cdhD CO dehydrogenas 55.6 49 0.0011 30.7 7.0 69 185-266 127-200 (389)
103 cd00739 DHPS DHPS subgroup of 54.4 54 0.0012 28.6 7.0 46 197-242 24-73 (257)
104 PLN02495 oxidoreductase, actin 54.3 1.4E+02 0.003 27.8 10.0 42 179-220 161-217 (385)
105 PRK10415 tRNA-dihydrouridine s 54.0 63 0.0014 29.2 7.6 74 133-218 78-170 (321)
106 PRK09432 metF 5,10-methylenete 53.8 1.1E+02 0.0023 27.4 8.9 73 146-218 202-276 (296)
107 PRK10605 N-ethylmaleimide redu 53.1 72 0.0016 29.4 7.9 70 189-263 151-234 (362)
108 PRK11613 folP dihydropteroate 52.8 53 0.0012 29.2 6.7 45 197-241 38-86 (282)
109 PLN02321 2-isopropylmalate syn 52.6 63 0.0014 32.2 7.8 60 197-266 240-299 (632)
110 cd00423 Pterin_binding Pterin 52.5 57 0.0012 28.3 6.9 47 196-242 23-73 (258)
111 cd07947 DRE_TIM_Re_CS Clostrid 51.1 52 0.0011 29.1 6.4 64 197-266 149-215 (279)
112 PF00701 DHDPS: Dihydrodipicol 50.7 59 0.0013 28.6 6.8 54 196-262 82-135 (289)
113 cd04740 DHOD_1B_like Dihydroor 50.5 44 0.00096 29.5 6.0 38 181-218 135-187 (296)
114 PF09505 Dimeth_Pyl: Dimethyla 50.4 67 0.0015 29.1 6.8 80 154-250 158-237 (466)
115 cd00019 AP2Ec AP endonuclease 50.4 1.6E+02 0.0034 25.5 9.5 64 196-265 84-147 (279)
116 PRK06843 inosine 5-monophospha 49.7 55 0.0012 30.7 6.6 66 197-277 152-217 (404)
117 TIGR00676 fadh2 5,10-methylene 48.2 98 0.0021 27.1 7.7 73 146-218 183-257 (272)
118 cd00381 IMPDH IMPDH: The catal 48.1 57 0.0012 29.5 6.3 67 198-279 94-160 (325)
119 TIGR02319 CPEP_Pphonmut carbox 47.3 52 0.0011 29.4 5.8 33 197-233 165-197 (294)
120 cd01299 Met_dep_hydrolase_A Me 46.6 90 0.002 27.9 7.5 51 200-264 123-183 (342)
121 PF00809 Pterin_bind: Pterin b 46.1 1.1E+02 0.0024 25.7 7.4 41 202-242 24-68 (210)
122 TIGR02320 PEP_mutase phosphoen 45.9 49 0.0011 29.4 5.4 36 196-234 168-203 (285)
123 TIGR00736 nifR3_rel_arch TIM-b 45.4 1.5E+02 0.0033 25.5 8.2 85 179-279 114-217 (231)
124 cd00950 DHDPS Dihydrodipicolin 44.8 82 0.0018 27.6 6.8 41 199-243 84-124 (284)
125 PRK13209 L-xylulose 5-phosphat 44.3 2.1E+02 0.0046 24.7 10.6 64 196-265 98-162 (283)
126 PF02219 MTHFR: Methylenetetra 43.6 1.1E+02 0.0024 27.0 7.4 26 193-218 247-272 (287)
127 TIGR00742 yjbN tRNA dihydrouri 43.5 1.1E+02 0.0023 27.7 7.3 119 134-271 69-210 (318)
128 PRK11320 prpB 2-methylisocitra 43.0 52 0.0011 29.4 5.2 35 196-234 165-199 (292)
129 PLN02540 methylenetetrahydrofo 43.0 1.7E+02 0.0036 28.9 8.9 76 136-218 186-269 (565)
130 COG3589 Uncharacterized conser 42.5 61 0.0013 29.5 5.4 58 197-265 16-73 (360)
131 PF08267 Meth_synt_1: Cobalami 42.5 1.5E+02 0.0032 26.8 7.9 89 134-241 136-225 (310)
132 TIGR01304 IMP_DH_rel_2 IMP deh 42.5 1.7E+02 0.0037 27.1 8.6 35 184-218 117-163 (369)
133 PLN02411 12-oxophytodienoate r 41.9 1.2E+02 0.0026 28.3 7.5 70 189-263 157-240 (391)
134 PF01729 QRPTase_C: Quinolinat 41.6 62 0.0013 26.4 5.0 61 201-280 91-153 (169)
135 TIGR00674 dapA dihydrodipicoli 40.8 2.5E+02 0.0054 24.7 9.2 20 138-157 57-76 (285)
136 PF01373 Glyco_hydro_14: Glyco 40.4 8.5 0.00019 35.8 -0.2 56 199-264 18-80 (402)
137 PF13714 PEP_mutase: Phosphoen 40.2 66 0.0014 27.8 5.2 66 193-279 151-216 (238)
138 cd00945 Aldolase_Class_I Class 40.1 70 0.0015 25.8 5.3 23 136-158 35-58 (201)
139 TIGR00737 nifR3_yhdG putative 40.1 1.5E+02 0.0032 26.6 7.8 109 133-268 76-204 (319)
140 PRK00915 2-isopropylmalate syn 40.0 68 0.0015 31.1 5.8 60 197-266 149-208 (513)
141 cd00953 KDG_aldolase KDG (2-ke 39.9 91 0.002 27.4 6.3 37 198-234 21-59 (279)
142 cd00537 MTHFR Methylenetetrahy 39.0 2.3E+02 0.005 24.6 8.7 78 136-220 177-262 (274)
143 cd02933 OYE_like_FMN Old yello 38.8 1.8E+02 0.0038 26.5 8.1 71 189-264 144-228 (338)
144 PTZ00380 microtubule-associate 38.6 14 0.00031 28.3 0.8 32 5-36 2-33 (121)
145 PRK05286 dihydroorotate dehydr 38.1 2.3E+02 0.0051 25.7 8.8 38 182-219 188-247 (344)
146 PF08053 Tna_leader: Tryptopha 37.9 16 0.00035 18.8 0.7 10 257-266 2-11 (24)
147 PTZ00151 translationally contr 37.7 45 0.00097 27.3 3.5 26 222-247 81-106 (172)
148 TIGR01362 KDO8P_synth 3-deoxy- 37.5 1.4E+02 0.0031 26.1 6.7 46 199-245 203-257 (258)
149 PHA02902 putative IMV membrane 37.1 20 0.00044 24.1 1.2 17 3-22 46-62 (70)
150 PRK08385 nicotinate-nucleotide 36.8 89 0.0019 27.7 5.6 65 200-281 192-258 (278)
151 TIGR02321 Pphn_pyruv_hyd phosp 36.7 77 0.0017 28.3 5.2 35 197-234 166-200 (290)
152 cd04738 DHOD_2_like Dihydrooro 36.6 2.3E+02 0.0049 25.6 8.4 37 182-218 179-237 (327)
153 cd02810 DHOD_DHPD_FMN Dihydroo 35.1 1.8E+02 0.0038 25.5 7.4 38 181-218 143-197 (289)
154 KOG2544|consensus 34.6 68 0.0015 30.6 4.6 122 129-276 450-578 (711)
155 PRK09806 tryptophanase leader 34.2 20 0.00044 18.8 0.7 10 257-266 2-11 (26)
156 cd00740 MeTr MeTr subgroup of 34.0 1.7E+02 0.0037 25.4 6.9 49 190-239 19-67 (252)
157 COG1038 PycA Pyruvate carboxyl 33.2 1.5E+02 0.0032 30.6 6.8 57 196-266 693-749 (1149)
158 PRK07535 methyltetrahydrofolat 32.8 2.8E+02 0.006 24.2 8.0 33 187-219 15-47 (261)
159 COG5599 PTP2 Protein tyrosine 32.5 45 0.00097 29.4 2.9 51 228-279 192-249 (302)
160 COG3867 Arabinogalactan endo-1 32.2 2.2E+02 0.0049 25.7 7.1 68 191-263 150-224 (403)
161 PF09370 TIM-br_sig_trns: TIM- 31.9 1.1E+02 0.0024 26.9 5.2 52 199-250 159-214 (268)
162 PRK04147 N-acetylneuraminate l 31.6 1.9E+02 0.0042 25.5 7.0 20 138-157 63-82 (293)
163 PF13653 GDPD_2: Glycerophosph 31.6 52 0.0011 18.6 2.2 14 201-214 11-24 (30)
164 TIGR01037 pyrD_sub1_fam dihydr 31.3 2.7E+02 0.0059 24.5 8.0 87 181-278 138-259 (300)
165 PHA02681 ORF089 virion membran 31.2 28 0.00061 24.7 1.2 12 3-14 44-55 (92)
166 PRK12457 2-dehydro-3-deoxyphos 31.1 2E+02 0.0044 25.5 6.8 47 199-246 219-274 (281)
167 TIGR00433 bioB biotin syntheta 29.9 2E+02 0.0044 25.1 6.9 70 198-279 66-137 (296)
168 PRK06096 molybdenum transport 29.9 1.6E+02 0.0034 26.3 6.0 77 186-281 174-263 (284)
169 TIGR01036 pyrD_sub2 dihydrooro 29.8 3.5E+02 0.0077 24.5 8.5 79 183-270 186-302 (335)
170 COG0646 MetH Methionine syntha 29.7 2.9E+02 0.0062 24.9 7.4 74 200-276 56-132 (311)
171 PF00478 IMPDH: IMP dehydrogen 29.4 1.5E+02 0.0033 27.2 6.0 64 200-278 110-173 (352)
172 cd02911 arch_FMN Archeal FMN-b 28.7 1.3E+02 0.0027 25.8 5.1 38 179-216 119-171 (233)
173 PLN02389 biotin synthase 28.6 2.5E+02 0.0054 26.1 7.4 72 196-278 118-191 (379)
174 TIGR02317 prpB methylisocitrat 28.3 1.3E+02 0.0028 26.8 5.2 34 196-233 160-193 (285)
175 COG0826 Collagenase and relate 27.9 1.2E+02 0.0026 27.8 5.1 45 200-247 16-61 (347)
176 TIGR00343 pyridoxal 5'-phospha 27.9 1.2E+02 0.0025 27.1 4.7 76 183-280 54-139 (287)
177 COG0167 PyrD Dihydroorotate de 27.6 1.8E+02 0.0039 26.3 6.0 67 131-200 224-293 (310)
178 cd04735 OYE_like_4_FMN Old yel 27.6 2.8E+02 0.006 25.3 7.5 73 192-264 139-225 (353)
179 PRK13523 NADPH dehydrogenase N 27.5 2.9E+02 0.0064 25.1 7.6 66 192-263 137-216 (337)
180 COG2876 AroA 3-deoxy-D-arabino 27.3 1.4E+02 0.0031 26.3 5.0 39 197-235 229-276 (286)
181 PRK08318 dihydropyrimidine deh 27.3 2.3E+02 0.0051 26.4 7.1 41 179-219 147-202 (420)
182 PRK05286 dihydroorotate dehydr 27.3 4.8E+02 0.01 23.7 9.0 65 132-199 273-340 (344)
183 PRK11613 folP dihydropteroate 27.0 1.6E+02 0.0035 26.1 5.6 46 201-266 101-146 (282)
184 cd01473 vWA_CTRP CTRP for CS 26.5 1E+02 0.0022 25.3 4.1 33 212-245 2-34 (192)
185 PRK05632 phosphate acetyltrans 26.4 5.2E+02 0.011 26.1 9.7 90 148-266 298-388 (684)
186 PRK09856 fructoselysine 3-epim 26.4 4.1E+02 0.009 22.7 9.9 62 196-263 89-151 (275)
187 PRK05198 2-dehydro-3-deoxyphos 26.3 2.3E+02 0.0051 24.9 6.3 41 199-240 211-260 (264)
188 PRK13210 putative L-xylulose 5 26.1 4.2E+02 0.0092 22.7 9.2 62 197-265 94-157 (284)
189 TIGR01334 modD putative molybd 25.9 1.3E+02 0.0029 26.6 4.8 77 186-281 173-262 (277)
190 PLN03033 2-dehydro-3-deoxyphos 25.8 3E+02 0.0066 24.5 6.9 48 198-246 221-277 (290)
191 PF05705 DUF829: Eukaryotic pr 25.6 1.4E+02 0.0031 25.2 5.0 64 198-266 15-78 (240)
192 COG1902 NemA NADH:flavin oxido 25.5 2.9E+02 0.0062 25.5 7.1 74 189-266 141-228 (363)
193 cd01292 metallo-dependent_hydr 25.2 3E+02 0.0065 22.8 7.0 50 203-266 108-158 (275)
194 COG2089 SpsE Sialic acid synth 25.1 1.9E+02 0.004 26.4 5.5 71 200-278 33-126 (347)
195 COG0119 LeuA Isopropylmalate/h 25.0 2.2E+02 0.0048 26.8 6.3 56 198-266 147-203 (409)
196 KOG0369|consensus 24.9 2.4E+02 0.0051 28.6 6.5 72 194-278 715-790 (1176)
197 KOG1654|consensus 24.7 39 0.00083 25.5 1.0 33 4-36 2-34 (116)
198 cd08205 RuBisCO_IV_RLP Ribulos 24.6 3.6E+02 0.0079 24.9 7.6 31 128-158 178-208 (367)
199 PRK07259 dihydroorotate dehydr 24.5 1.5E+02 0.0033 26.2 5.1 38 181-218 138-190 (301)
200 cd01306 PhnM PhnM is believed 24.2 2.4E+02 0.0052 25.6 6.3 75 193-273 91-195 (325)
201 PRK08649 inosine 5-monophospha 24.1 3E+02 0.0066 25.4 7.0 34 184-217 116-161 (368)
202 PRK08508 biotin synthase; Prov 24.0 3.6E+02 0.0078 23.6 7.3 69 199-279 45-116 (279)
203 PF00724 Oxidored_FMN: NADH:fl 24.0 1.6E+02 0.0035 26.7 5.2 64 197-266 36-107 (341)
204 TIGR00542 hxl6Piso_put hexulos 23.9 4.7E+02 0.01 22.5 9.7 60 197-263 94-155 (279)
205 cd02932 OYE_YqiM_FMN Old yello 23.3 1.8E+02 0.004 26.2 5.4 66 195-266 31-104 (336)
206 PF07745 Glyco_hydro_53: Glyco 23.0 4.3E+02 0.0092 24.1 7.6 64 197-266 58-135 (332)
207 cd02801 DUS_like_FMN Dihydrour 23.0 1.6E+02 0.0035 24.6 4.8 75 132-218 67-159 (231)
208 PRK05718 keto-hydroxyglutarate 22.9 1.2E+02 0.0027 25.6 3.9 95 133-236 52-153 (212)
209 COG0434 SgcQ Predicted TIM-bar 22.9 3.2E+02 0.0069 23.8 6.3 55 191-247 28-83 (263)
210 PF11333 DUF3135: Protein of u 22.6 1.8E+02 0.0039 20.7 4.1 31 173-203 5-35 (83)
211 PF00838 TCTP: Translationally 22.5 1.1E+02 0.0023 24.9 3.3 25 223-247 78-102 (165)
212 PRK06559 nicotinate-nucleotide 22.5 1.5E+02 0.0032 26.5 4.5 60 200-281 207-268 (290)
213 PRK04180 pyridoxal biosynthesi 22.5 2.7E+02 0.0058 24.9 6.0 79 181-281 59-147 (293)
214 cd07586 nitrilase_8 Uncharacte 22.5 3.7E+02 0.0079 23.0 7.0 55 193-247 15-70 (269)
215 PRK07807 inosine 5-monophospha 22.4 2.3E+02 0.005 27.3 6.1 67 195-279 224-293 (479)
216 PRK14847 hypothetical protein; 22.3 2.4E+02 0.0051 25.8 5.8 60 197-266 187-252 (333)
217 cd04734 OYE_like_3_FMN Old yel 22.1 2.4E+02 0.0053 25.6 6.0 66 195-266 31-104 (343)
218 COG0502 BioB Biotin synthase a 21.8 2E+02 0.0042 26.3 5.1 66 197-278 87-157 (335)
219 cd03151 CD81_like_LEL Tetraspa 21.8 96 0.0021 21.7 2.6 13 258-270 40-52 (84)
220 PF02548 Pantoate_transf: Keto 21.6 5.4E+02 0.012 22.6 7.6 62 194-261 59-138 (261)
221 COG3139 Uncharacterized protei 21.6 40 0.00088 23.9 0.6 30 6-35 5-35 (90)
222 PRK13523 NADPH dehydrogenase N 21.4 1.7E+02 0.0036 26.7 4.7 66 195-266 35-108 (337)
223 COG4075 Uncharacterized conser 21.3 1.1E+02 0.0024 22.5 2.8 43 204-248 21-64 (110)
224 cd04741 DHOD_1A_like Dihydroor 21.2 3.5E+02 0.0076 23.9 6.7 63 132-197 227-292 (294)
225 cd00408 DHDPS-like Dihydrodipi 21.1 2.4E+02 0.0053 24.5 5.6 23 136-158 54-76 (281)
226 PRK05848 nicotinate-nucleotide 21.0 1.2E+02 0.0026 26.8 3.6 63 200-281 192-256 (273)
227 PRK08444 hypothetical protein; 20.9 3.4E+02 0.0074 24.9 6.7 48 195-250 81-128 (353)
228 PRK13207 ureC urease subunit a 20.8 2.9E+02 0.0063 27.2 6.4 47 200-262 203-249 (568)
229 cd00951 KDGDH 5-dehydro-4-deox 20.8 2.6E+02 0.0057 24.6 5.8 19 138-156 59-77 (289)
230 PF01207 Dus: Dihydrouridine s 20.7 2.1E+02 0.0045 25.6 5.2 40 179-218 101-159 (309)
231 PRK13397 3-deoxy-7-phosphohept 20.7 2E+02 0.0044 25.1 4.8 52 201-259 33-84 (250)
232 PF04909 Amidohydro_2: Amidohy 20.5 2.5E+02 0.0054 23.6 5.5 41 207-261 95-137 (273)
233 PF00724 Oxidored_FMN: NADH:fl 20.5 3.6E+02 0.0078 24.4 6.8 71 192-266 144-228 (341)
234 COG0042 tRNA-dihydrouridine sy 20.5 6.4E+02 0.014 22.8 10.2 75 132-218 78-173 (323)
235 cd07940 DRE_TIM_IPMS 2-isoprop 20.5 4.3E+02 0.0094 22.9 7.1 65 195-275 18-82 (268)
236 PRK02506 dihydroorotate dehydr 20.4 6.2E+02 0.013 22.6 9.2 66 132-200 225-293 (310)
237 TIGR01303 IMP_DH_rel_1 IMP deh 20.4 2.5E+02 0.0053 27.0 5.8 69 195-278 222-290 (475)
238 cd00954 NAL N-Acetylneuraminic 20.3 3.2E+02 0.007 24.0 6.2 20 138-157 60-79 (288)
239 COG1646 Predicted phosphate-bi 20.1 2.7E+02 0.0058 24.1 5.3 60 183-265 22-81 (240)
240 TIGR03249 KdgD 5-dehydro-4-deo 20.1 2.7E+02 0.0059 24.6 5.8 19 139-157 65-83 (296)
241 PRK11081 tRNA guanosine-2'-O-m 20.0 1.6E+02 0.0035 25.2 4.1 50 11-83 1-50 (229)
242 PF03437 BtpA: BtpA family; I 20.0 2.6E+02 0.0056 24.5 5.4 51 192-247 24-78 (254)
No 1
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=100.00 E-value=2.1e-54 Score=393.53 Aligned_cols=263 Identities=45% Similarity=0.791 Sum_probs=246.0
Q ss_pred CCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccc
Q psy15359 12 PPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI 90 (281)
Q Consensus 12 ~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~ 90 (281)
|.+|+||++++++||++||||+++|.++|+|+++|+.++.|+ ++.|++.|++++++++++.+++||+|++++++|+.++
T Consensus 1 ~~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~ 80 (346)
T PRK00115 1 TELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTP 80 (346)
T ss_pred CCcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhh
Confidence 456799999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCC
Q psy15359 91 PQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGG 170 (281)
Q Consensus 91 ~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~ 170 (281)
+++||+++.|+++.+|.+.+++++++|+++++. ++++++++.++++++++++++++++|++++++||||+|++|++|++
T Consensus 81 ~ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~-~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~ 159 (346)
T PRK00115 81 PDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPV-PDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGG 159 (346)
T ss_pred HHHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCC-CCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCC
Confidence 999999999998888988778999999999987 7878899999999999999999999999999999999999998777
Q ss_pred CCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhcc
Q psy15359 171 SKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250 (281)
Q Consensus 171 ~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~ 250 (281)
++++++++++++++||.+|++|+++++.+++|+++++++|+|+|+++|+++++|||++|+||++||+|+|++.+++..|+
T Consensus 160 ~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~ 239 (346)
T PRK00115 160 SKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPD 239 (346)
T ss_pred CccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999986323
Q ss_pred CCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 251 MNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 251 ~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
..++|+||++. .++++.+++.+.+|
T Consensus 240 -----~~ilh~cg~~~~~~~~~~~~~~~~is 265 (346)
T PRK00115 240 -----VPVILFGKGAGELLEAMAETGADVVG 265 (346)
T ss_pred -----CCEEEEcCCcHHHHHHHHhcCCCEEe
Confidence 35777777765 79999999988764
No 2
>PLN02433 uroporphyrinogen decarboxylase
Probab=100.00 E-value=4e-53 Score=384.70 Aligned_cols=257 Identities=40% Similarity=0.690 Sum_probs=240.9
Q ss_pred HHHHHcCCCCCccccccchhhhhchHHHHHHhc-CCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcCCCE
Q psy15359 19 LLRAARGEEVDKIPIWIMRQAGRYLPEFRELRS-KHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMV 97 (281)
Q Consensus 19 v~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~-~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~G~~ 97 (281)
++++++||++||+|+++|.++|+|.++|+.++. |.++.+++.||+++++++++++++||+|++++++|+.+++++||++
T Consensus 1 ~~~~~~g~~~dr~Pv~~~~q~g~~~~ey~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~di~~~~ea~G~~ 80 (345)
T PLN02433 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVILFSDILTPLPAMGIP 80 (345)
T ss_pred ChHHHCCCCCCCCCeeeeecchhccHHHHHHHHhcCCHHHHhCCHHHHHHHHHHHHHHhCCCeEEecCCCCcCHHHcCCe
Confidence 468999999999999999999999999986654 6789999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHH
Q psy15359 98 VEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKS 177 (281)
Q Consensus 98 ~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~ 177 (281)
+.|+++.+|.+..|+++++|++++.. +++++|++.++++++++++++++++|++++++||||+|++|++|+++++++++
T Consensus 81 i~~~~~~~P~~~~~i~~~~d~~~l~~-~~~~~~l~~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~ 159 (345)
T PLN02433 81 FDIVKGKGPVIPNPIRSEEDVKRLHP-LDPEEKLPFVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVI 159 (345)
T ss_pred EEECCCCCCccCCCCCCHHHHHhccC-CCchhhhHHHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHH
Confidence 99988777866779999999999987 77789999999999999999999999999999999999999988888889999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 178 KHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 178 ~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
+++++++||.+|++|+++|+.+++|+++++++|++.+.++|+|+++|||++|+||++||+|+|++.+++..++ .++
T Consensus 160 ~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~----~~~ 235 (345)
T PLN02433 160 KKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPD----VPL 235 (345)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC----CCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986444 789
Q ss_pred EEEecCCcccchhhhcCCCCCCC
Q psy15359 258 TIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 258 ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
++|+||+...++++.+++.+.+|
T Consensus 236 ilh~cG~~~~~~~~~~~~~~~i~ 258 (345)
T PLN02433 236 ILYANGSGGLLERLAGTGVDVIG 258 (345)
T ss_pred EEEeCCCHHHHHHHHhcCCCEEE
Confidence 99999998889999999988765
No 3
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=100.00 E-value=5.1e-52 Score=377.07 Aligned_cols=257 Identities=53% Similarity=0.885 Sum_probs=239.5
Q ss_pred HHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcCCC
Q psy15359 18 RLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGM 96 (281)
Q Consensus 18 Rv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~G~ 96 (281)
|++++++||++||||+++|.++|+|+++|++++.|+ ++.+++.|++++++++++.+++||+|++++++|+++++++||+
T Consensus 1 ~~~~~~~g~~~dr~Pv~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~d~~~~~ea~G~ 80 (338)
T TIGR01464 1 LFLRAAKGEEVDRPPVWLMRQAGRYLPEYRELRAKAPDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPLQALGL 80 (338)
T ss_pred ChhHHhCCCCCCCCCeeeehhcccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccccccHHHcCC
Confidence 578999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHH
Q psy15359 97 VVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSK 176 (281)
Q Consensus 97 ~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~ 176 (281)
++.|+++.+|++.+++++.+|+++++. +++++|++.++++++++++++++++|++++++||||+|++|++|+.++++++
T Consensus 81 ~i~~~~~~~P~~~~~i~~~~d~~~l~~-~~~~~~~~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~ 159 (338)
T TIGR01464 81 DVDFVEGKGPVIPEPIRTPEDVERLKE-FDPESELPYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAK 159 (338)
T ss_pred eeEecCCCCCccCCCCCCHHHHHhcCC-CChhhchHHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHH
Confidence 999998878977778999999999988 7777899999999999999999999999999999999999997666677999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc
Q psy15359 177 SKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP 256 (281)
Q Consensus 177 ~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~ 256 (281)
++++++++||.+|++|+++++.+++|+++++++|+|+++++|+++++|||++|+||++||++++++.+++..++ .
T Consensus 160 ~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~-----~ 234 (338)
T TIGR01464 160 AKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN-----V 234 (338)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986433 4
Q ss_pred EEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 257 MTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 257 ~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
.++|+||++. .++++.+++.+.+|
T Consensus 235 ~ilh~cg~~~~~~~~~~~~~~~~~s 259 (338)
T TIGR01464 235 PVILFAKGAGHLLEELAETGADVVG 259 (338)
T ss_pred CEEEEeCCcHHHHHHHHhcCCCEEE
Confidence 5677777665 69999999987764
No 4
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00 E-value=3.9e-51 Score=370.90 Aligned_cols=254 Identities=52% Similarity=0.862 Sum_probs=233.7
Q ss_pred HHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcCCCEEEe
Q psy15359 21 RAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEM 100 (281)
Q Consensus 21 aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~G~~~~~ 100 (281)
++++|+++||||+++|.++|+|+++|+.++.|+++.+++.||+++++++++++++||+|++++++|+.+++|+||+++.|
T Consensus 2 ~a~~g~~~DriPv~~~~~~g~~~~~~~~~~~~~~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~~ 81 (335)
T cd00717 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKYSFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDVEF 81 (335)
T ss_pred ccccCCCCCCCCeeeehhcccccHHHHHHHccCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHcCCeEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHH
Q psy15359 101 KPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHW 180 (281)
Q Consensus 101 ~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~ 180 (281)
+++.+|.+.+++++++|+++++. ++++++++.++++++++++++++++|++++++||||+|++|++|+.++++++++++
T Consensus 82 ~~~~~p~~~~~i~~~~d~~~~~~-~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~ 160 (335)
T cd00717 82 VEGKGPVIPNPIRTEADVDRLLV-PDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKM 160 (335)
T ss_pred CCCCCCcCCCCCCCHHHHHhccC-CChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHH
Confidence 98878877778999999999877 77778999999999999999999999999999999999999965555678999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEE
Q psy15359 181 LYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIF 260 (281)
Q Consensus 181 l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH 260 (281)
++++||.+|++|+++++.+++++++++++|+|+|+++|+++++|||++|+||++||+|+|++.+++..++ .+ ++|
T Consensus 161 l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~----~~-ilh 235 (335)
T cd00717 161 MYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPG----VP-VIL 235 (335)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCC----CC-EEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987434 45 455
Q ss_pred ecC-CcccchhhhcCCCCCCC
Q psy15359 261 AKG-APKQGHNCYNYSNPMLS 280 (281)
Q Consensus 261 ~cG-~~~~~~~~~~~~~~~~~ 280 (281)
+|| +...++++.+++.+.+|
T Consensus 236 ~cg~~~~~~~~~~~~~~~~~s 256 (335)
T cd00717 236 FAKGAGGLLEDLAQLGADVVG 256 (335)
T ss_pred EcCCCHHHHHHHHhcCCCEEE
Confidence 555 44579999999887654
No 5
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=100.00 E-value=9.2e-51 Score=369.67 Aligned_cols=256 Identities=35% Similarity=0.580 Sum_probs=214.5
Q ss_pred hHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcC
Q psy15359 15 KNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQAL 94 (281)
Q Consensus 15 ~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~ 94 (281)
||||++++++||++||||+++++++|++...+.....|+++.+++.|++++++++++++++||+|++.+++|..+++++|
T Consensus 2 ~~er~~~~~~~~~~DrvPv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~~d~~~~aea~ 81 (343)
T PF01208_consen 2 SRERVLAALNGEPVDRVPVWPMRQAGRYLPEYAAEKTGISFPEYCRDPEKMAEAQIKAYEKFGPDFIKIPFDLTVEAEAL 81 (343)
T ss_dssp S--HHHHHHTT---SS--B--TTSSSTTSHHHHHHHHHSSHHHHCTSHHHHHHHHHHHHHHC--SEEE-S--TTHHHHGC
T ss_pred chhHHHHHHcCCCCCCcCeEccccccccChHHHHHhcCcchHHHhcCHHHHHHHHHHHHHhcCCCEEEecCceeehHHHc
Confidence 39999999999999999999988888888888777789999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCcCCCCCCChHHHhcCCCCCCc--ccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCC
Q psy15359 95 GMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDV--YKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSK 172 (281)
Q Consensus 95 G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~--~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~ 172 (281)
|+++.++++.+|.+..++.+++|+++++. +++ +++++.++++++++++++++++|++++++|||+++++|+.|+
T Consensus 82 G~~v~~~~~~~P~~~~~~~~~eD~~~l~~-~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~--- 157 (343)
T PF01208_consen 82 GCEVEFPEDDGPSVEEPIISPEDLDKLKI-PDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGR--- 157 (343)
T ss_dssp TTEEEEETTTEEEESS---SHHHHHTS---GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSS---
T ss_pred CCeEEecCCCCCccccCcCCHHHHhhhcc-cCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCC---
Confidence 99999999888998765449999999999 876 479999999999999999999999999999999999999654
Q ss_pred chHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCC
Q psy15359 173 TMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMN 252 (281)
Q Consensus 173 g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~ 252 (281)
|+++++++++++||.++++|+++++.+++++++++++|+|+|+++|+++++|||++|++|++||+||+++.+|+. |
T Consensus 158 g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~--g-- 233 (343)
T PF01208_consen 158 GFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEA--G-- 233 (343)
T ss_dssp S-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHH--E--
T ss_pred CHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHh--C--
Confidence 699999999999999999999999999999999999999999999977789999999999999999999999998 6
Q ss_pred CCC-cEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 253 NDV-PMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 253 ~~~-~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
. ++++|+||++. .++++.++|.+.++
T Consensus 234 --~~~~~lH~cG~~~~~~~~l~~~g~d~~~ 261 (343)
T PF01208_consen 234 --KDPVILHICGNTTPILDDLADLGADVLS 261 (343)
T ss_dssp --TE-EEEEETTHG-GGHHHHHTSS-SEEE
T ss_pred --CCceEEEECCchHHHHHHHHhcCCCEEE
Confidence 7 99999999995 79999999987654
No 6
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-49 Score=355.44 Aligned_cols=262 Identities=47% Similarity=0.772 Sum_probs=241.2
Q ss_pred ChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchh
Q psy15359 14 LKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQ 92 (281)
Q Consensus 14 ~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~e 92 (281)
++++|+++|++||++||+|||+++|||+|++.|+..+... ++.|+|.|||++++++++..+++|+|++.+++|+.++++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred chHHHHHHHHcCCCCCCCCeEeeecccccccHHHHHHHhcCCHHHHhcCHHHHHHHHhhhHHHhCCCeeeeehhhcccHH
Confidence 4499999999999999999999999999999999888654 999999999999999999999999999999999999999
Q ss_pred cCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCC
Q psy15359 93 ALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSK 172 (281)
Q Consensus 93 a~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~ 172 (281)
++|++++|.++.+|.+..|+.+.++.+.+...+++.++++.++++++.+++++++++|++++++||||+|++|++|++++
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HcCCeeecCCCCCCccCCCCCchhhhhhccCCcCcccchHHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcc
Confidence 99999999999999998899999987655411577789999999999999999989999999999999999999999999
Q ss_pred chHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCC
Q psy15359 173 TMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMN 252 (281)
Q Consensus 173 g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~ 252 (281)
.+.+++.+|+++||.+|++|++++|.+++|+++|+++|||.|+++|+|++.+++..|++|+.||.+++++.+++..++
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-- 242 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-- 242 (352)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987433
Q ss_pred CCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 253 NDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 253 ~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
+.++|.|++.. .++.+...+.+.+|
T Consensus 243 ---~pii~f~~ga~~~l~~m~~~g~d~l~ 268 (352)
T COG0407 243 ---VPVIHFCKGAGHLLEDMAKTGFDVLG 268 (352)
T ss_pred ---CcEEEECCCcHHHHHHHHhcCCcEEe
Confidence 45778887776 57778887776554
No 7
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=100.00 E-value=1e-48 Score=355.72 Aligned_cols=253 Identities=21% Similarity=0.307 Sum_probs=225.6
Q ss_pred CCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccccc
Q psy15359 10 TFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 89 (281)
Q Consensus 10 ~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~ 89 (281)
+||| +||++++++||++||+|+....+.+.. +...+.|.+++||+.||+++++++++.+++||+|++.+++|+.+
T Consensus 2 ~mt~--~er~~~~~~g~~~dr~Pv~~~~~~~~~---~~~~~~G~~~~e~~~~~~~~a~~~~~~~~~~~~D~~~~~~d~~~ 76 (340)
T TIGR01463 2 EMTP--KERLFAAVTGQTVDDVPPCVPTQTLTT---ELMRECGATWPEAHRDGEAMAHLAIAAYEKFGGEAVRPPFDLTT 76 (340)
T ss_pred CCCH--HHHHHHHhcCCCCCcCCcccchHHHHH---HHHHHhCCcchhhcCCHHHHHHHHHHHHHHhCCCeeecCCCcch
Confidence 6999 999999999999999997432111110 01123577888999999999999999999999999999999999
Q ss_pred chhcCCCEEEecCCCCCcCCC-C-CCChHHHhcCCCCCC-cccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHH
Q psy15359 90 IPQALGMVVEMKPAVGPVLPE-P-LVIPEDLKKLKTPVD-VYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMI 166 (281)
Q Consensus 90 ~~ea~G~~~~~~~~~~p~~~~-~-i~~~eD~~~l~~~~d-~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~ 166 (281)
++||||+++.|+++.+|.+.. | +++++|++++.. ++ .++|++.++++++++++++++++|++++++||||++++|+
T Consensus 77 ~aea~G~~i~~~~~~~P~v~~~~~i~~~~d~~~l~~-~~~~~~~~~~~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~ 155 (340)
T TIGR01463 77 EAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPEN-YLLKPGRIPVVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMI 155 (340)
T ss_pred HHHhcCCeecCCCCCCCccccCCCCCCHHHhccccc-cCcCCcchhhHHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHH
Confidence 999999999999987898864 7 599999999987 64 4689999999999999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHH
Q psy15359 167 EGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 167 ~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i 244 (281)
|.++++++++++||.++++++++++.+++++++++++|+|+|+++|++++ ++||++|++|++||++++++.+
T Consensus 156 ------g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i 229 (340)
T TIGR01463 156 ------GVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYI 229 (340)
T ss_pred ------CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998864 7999999999999999999999
Q ss_pred HHhhccCCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 245 KAQLKQMNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 245 ~~~~~~~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
|+. + .++++|+||++. .++.+.+++.+.+|
T Consensus 230 ~~~--g----~~~ilH~CG~~~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 230 KEI--G----GITVLHICGFTQPILRDIANNGCFGFS 260 (340)
T ss_pred Hhc--C----CceEEEECCCchhhHHHHHHhCCCEEe
Confidence 986 4 578999999997 68999999988765
No 8
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=100.00 E-value=1.5e-48 Score=354.52 Aligned_cols=252 Identities=25% Similarity=0.404 Sum_probs=228.7
Q ss_pred cCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccc
Q psy15359 9 MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL 88 (281)
Q Consensus 9 ~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~ 88 (281)
.+||| +||++++++|+++||+|++++.++|++ .|+.+ .|.++.|+|.||+++++++++.+++||+|++.+++|+.
T Consensus 1 ~~mt~--~er~~~~~~g~~~dr~Pv~~~~~~g~~--e~~~~-~g~~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~ 75 (339)
T PRK06252 1 SELTP--KERLLNALKGKEVDRVPVICVTQTGTV--ELMDI-TGAYWPEAHSDPEKMADLAIAGYEVAGFEAVRVPFCMT 75 (339)
T ss_pred CCCCH--HHHHHHHHCCCCCCccCccchhhhHHH--HHHHH-cCCCchhccCCHHHHHHHHHHHHHhcCCCeeccCcchH
Confidence 47999 999999999999999999999888875 44333 47899999999999999999999999999999999999
Q ss_pred cchhcCCCEEEecCC-CCCcC-CCCCCChHHHhcCCCCCCc-ccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHH
Q psy15359 89 VIPQALGMVVEMKPA-VGPVL-PEPLVIPEDLKKLKTPVDV-YKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYM 165 (281)
Q Consensus 89 ~~~ea~G~~~~~~~~-~~p~~-~~~i~~~eD~~~l~~~~d~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l 165 (281)
+++++||+++.|+++ .+|.+ .+++++.+|+.+++. ++. ++|++.++++++.+++++++++|++++++||||+++++
T Consensus 76 ~~aea~G~~v~~~~~~~~P~v~~~~i~~~~d~~~l~~-~~~~~~~~~~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l 154 (339)
T PRK06252 76 VEAEAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPD-DLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSL 154 (339)
T ss_pred HHHHHhCCeecCCCCCCCCcccccccccChhhhhccc-chhhCccHhHHHHHHHHHHHHcCCcCceeCccCChHHHHHHH
Confidence 999999999999744 67875 568989999999876 443 58999999999999999998999999999999999999
Q ss_pred HhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHH
Q psy15359 166 IEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEK 243 (281)
Q Consensus 166 ~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~ 243 (281)
+ |.++++++++++||.+|++|+++++.+++++++++++|+|+|+++|++++ ++||++|+||++||++++++.
T Consensus 155 ~------g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~ 228 (339)
T PRK06252 155 M------GPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDE 228 (339)
T ss_pred H------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 9 68999999999999999999999999999999999999999999999875 799999999999999999999
Q ss_pred HHHhhccCCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 244 VKAQLKQMNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 244 i~~~~~~~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
+++. ++++|+||++. .++++.+++.+.+|
T Consensus 229 i~~~--------~~ilH~cG~~~~~l~~~~~~g~d~~~ 258 (339)
T PRK06252 229 VKGL--------PTILHICGDLTSILEEMADCGFDGIS 258 (339)
T ss_pred hccC--------CcEEEECCCchHHHHHHHhcCCCeec
Confidence 9853 46899999986 68999999887664
No 9
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00 E-value=8.5e-47 Score=341.23 Aligned_cols=242 Identities=25% Similarity=0.359 Sum_probs=220.8
Q ss_pred HHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcCCCEEEe
Q psy15359 21 RAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEM 100 (281)
Q Consensus 21 aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~G~~~~~ 100 (281)
++++||++||+|++++.++|+ +.|+.+ .|.++.|++.||+++++++++.+++||+|++.+++|+.++++|||+++.|
T Consensus 2 ~~~~g~~~dr~Pv~~~~~~~~--~e~~~~-~g~~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~~ea~G~~v~~ 78 (326)
T cd03307 2 AALNGQPVDRVPVICPTQTGT--VELMEA-TGAYWPEAHSDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEALGCEVDW 78 (326)
T ss_pred ccccCCCCCccCcccchhhHH--HHHHHH-hCCcchhhhcCHHHHHHHHHHHHHHhCCCeeecCCccchHHHhcCCeecc
Confidence 689999999999999888777 555543 57889999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCcC-CCCCCChHHHhcCCCCCC-cccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHH
Q psy15359 101 KPA-VGPVL-PEPLVIPEDLKKLKTPVD-VYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKS 177 (281)
Q Consensus 101 ~~~-~~p~~-~~~i~~~eD~~~l~~~~d-~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~ 177 (281)
+++ .+|.+ .+|+++.+|+++++. .+ .+++++.++++++++++++++++|++++++||||+|++++ |.+++
T Consensus 79 ~~~~~~P~v~~~~i~~~~d~~~l~~-~~~~~~~~~~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~------g~~~~ 151 (326)
T cd03307 79 GTKDIQPSVTSHPFKKLEDVEKLPD-DFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLA------GVENF 151 (326)
T ss_pred CCCCCCccccCCCCCCHHHHhhccc-cccccccHHHHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHH------hHHHH
Confidence 865 47988 578999999998865 33 4689999999999999999989999999999999999999 68999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCC
Q psy15359 178 KHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDV 255 (281)
Q Consensus 178 ~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~ 255 (281)
+++++++||.+|++|+++++.+++|+++++++|+|+|+++|++++ ++||++|++|++||+|++++.+++ .
T Consensus 152 ~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--------~ 223 (326)
T cd03307 152 LKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG--------C 223 (326)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 999999999999999999999999999999999999999999874 589999999999999999999986 2
Q ss_pred cEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 256 PMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 256 ~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
++++|+||++. .++.+.+++.+.+|
T Consensus 224 ~~ilh~cG~~~~~l~~~~~~g~d~~~ 249 (326)
T cd03307 224 PTILHICGNTTPILEYIAQCGFDGIS 249 (326)
T ss_pred CcEEEECCCChhHHHHHHHcCCCeec
Confidence 68999999986 68899999887764
No 10
>KOG2872|consensus
Probab=100.00 E-value=1e-46 Score=318.73 Aligned_cols=269 Identities=62% Similarity=1.028 Sum_probs=253.6
Q ss_pred CCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccc
Q psy15359 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI 90 (281)
Q Consensus 11 ~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~ 90 (281)
++.+|..-+++|.+||++||.|+|+|++||+|+++|++++...++.+-|.+||...|..+++.++|..|++.+++|+.++
T Consensus 7 fp~~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILvi 86 (359)
T KOG2872|consen 7 FPALKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQDFFETCRNPELACEITLQPLRRFRLDAAIIFSDILVI 86 (359)
T ss_pred CCCCCchHHHHHhcCcccCCCchHHHHHhhcccHHHHHHHHhccHHHhcCCccceeeEecchhhccCCceeEEeeccccC
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcc-cchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCC
Q psy15359 91 PQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVY-KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGG 169 (281)
Q Consensus 91 ~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~-~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~ 169 (281)
..|+|..+.+-++.+|.+..|+.+++|++++.. +.+. .+++.+.+++..+|.++++++|++|++++|||+++++++|+
T Consensus 87 pqalgm~v~m~egkGP~~p~Plr~~eDl~rl~~-~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGG 165 (359)
T KOG2872|consen 87 PQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRD-PEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGG 165 (359)
T ss_pred chhcCceEEEeeccCCCCCCCCCCHHHHHHhcc-CcchhhhcchHHHHHHHHHHHhcCccceeeecCCchhhheeeecCC
Confidence 999999999999999999999999999999987 6553 36899999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc
Q psy15359 170 GSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK 249 (281)
Q Consensus 170 ~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~ 249 (281)
||+.+.+.-.|+++.||..|++|.++|+.+++|...|+.+||..+.++|+|++.+||++|++|.+||+++|.+++++..+
T Consensus 166 gSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~ 245 (359)
T KOG2872|consen 166 GSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLP 245 (359)
T ss_pred CchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCC-CCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 250 QMN-NDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 250 ~~~-~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
..+ .-+|+|+++-|++.+++.+...|-+.++
T Consensus 246 ~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvg 277 (359)
T KOG2872|consen 246 ELGLAPVPMILFAKGSGGALEELAQTGYDVVG 277 (359)
T ss_pred hhcCCCCceEEEEcCcchHHHHHHhcCCcEEe
Confidence 522 2249999999999999999999988764
No 11
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=100.00 E-value=1.6e-43 Score=320.33 Aligned_cols=242 Identities=29% Similarity=0.379 Sum_probs=219.3
Q ss_pred HHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccchhcCCCEEEe
Q psy15359 21 RAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEM 100 (281)
Q Consensus 21 aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~~ea~G~~~~~ 100 (281)
++++|+++||||+++|.+.+. .. ..|.++.|+++|++++++++++.+++||+|++++++|+.+++++||+++.+
T Consensus 2 ~a~~g~~~drvPv~~~~~~~~--~~----~~g~~~~e~~~d~e~~~e~~~~~~~~~~~D~~~~~~d~~~~~ealG~~i~~ 75 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGGA--AE----FIGISLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIRY 75 (330)
T ss_pred chhcCCCCCccceeeeecccc--hh----hcCccHHHHhcCHHHHHHHHHHHHHHcCCCeEEeccCccchHHhcCCeEee
Confidence 689999999999999965443 22 358899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCC-CCCChHHHhcCCC-CCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHH
Q psy15359 101 KPAVGPVLPE-PLVIPEDLKKLKT-PVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSK 178 (281)
Q Consensus 101 ~~~~~p~~~~-~i~~~eD~~~l~~-~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~ 178 (281)
+++.+|.+.. ++++.+|++++.. .+..++|++.++++++++++++++++|+++.+.||||++++|+ |.++++
T Consensus 76 ~~~~~p~v~~~~~~~~~d~~~~~~~~~~~~~r~~~~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~------g~~~~~ 149 (330)
T cd03465 76 PEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLM------GASKFL 149 (330)
T ss_pred cCCCCCccccccCCCHHHHhhccCCCcCccchHHHHHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHH------hHHHHH
Confidence 9888899864 5899999997654 1333689999999999999999988999999999999999999 689999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc
Q psy15359 179 HWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP 256 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~ 256 (281)
++++++||.++++++++++.+++++++++++|+++|+++|++++ ++||++|++|++||+|++++.+++. | .+
T Consensus 150 ~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g----~~ 223 (330)
T cd03465 150 MLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--G----GP 223 (330)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--C----Cc
Confidence 99999999999999999999999999999999999999998874 5799999999999999999999986 5 79
Q ss_pred EEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 257 MTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 257 ~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
+++|+||++. .++.+.+++.+.+|
T Consensus 224 ~~lH~cG~~~~~~~~l~~~~~d~~~ 248 (330)
T cd03465 224 VIHHNCGDTAPILELMADLGADVFS 248 (330)
T ss_pred eEEEECCCchhHHHHHHHhCCCeEe
Confidence 9999999994 79999999988765
No 12
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=100.00 E-value=1e-42 Score=319.74 Aligned_cols=247 Identities=14% Similarity=0.088 Sum_probs=210.3
Q ss_pred CChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccccc--c
Q psy15359 13 PLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV--I 90 (281)
Q Consensus 13 ~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~--~ 90 (281)
.++.||+.++++||++||||+.+. ++.+... ..|++++|+++|++++++++.+.+++||+|++.+++++.. +
T Consensus 3 ~er~eR~~~~~~g~~~DRvP~~~~--~~~~~~~----~~G~~~~e~~~d~~~~a~~~~~~~~~~g~D~~~~~~~l~~~~~ 76 (378)
T cd03308 3 QERVQRLKDAIEGKKPDRVPILSQ--FTEWFIQ----YAGMTLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPPSF 76 (378)
T ss_pred HHHHHHHHHHHcCCCCCceeecch--hhHHHHH----HcCccHHHHhcCHHHHHHHHHHHHHHcCccccccccccCCchH
Confidence 457999999999999999999875 2333322 3699999999999999999999999999999999999888 7
Q ss_pred hhcCCCEEEecCC--CCCcCC-CCCCChHHHhcCCCCCCc---c------------c---chHHHHHH------------
Q psy15359 91 PQALGMVVEMKPA--VGPVLP-EPLVIPEDLKKLKTPVDV---Y------------K---ELNYVFEA------------ 137 (281)
Q Consensus 91 ~ea~G~~~~~~~~--~~p~~~-~~i~~~eD~~~l~~~~d~---~------------~---~~~~~~~~------------ 137 (281)
+++|||++.+... ..|.+. +++++++||+++..++.. + + +++.++++
T Consensus 77 aealG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~lpr~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~ 156 (378)
T cd03308 77 YQALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIADPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNTNG 156 (378)
T ss_pred HHHhcccceecCCCCccCcchhhccCCHHHHHHHHhCHHHHHHHhHhhhhhhhhcccchhhHHHHHHHHHHHHHHHhhHH
Confidence 9999999986432 234443 478999999954332211 1 3 66677788
Q ss_pred --HHHHH-HHcCCCccEEEecCcHHH-HHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 138 --ITLTR-HKLEGKVPLIGFSGAPWT-LMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 138 --~~~l~-~~~~~~~~i~~~~~gPf~-~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
+++++ +++|+.+|+.+.+.|||+ +|++|+ |+++++++++++||.+|++|+++++.+++|+++++++|+++
T Consensus 157 ~~~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~------g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~ 230 (378)
T cd03308 157 PIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLR------GFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPG 230 (378)
T ss_pred HHHHHHHhhccCCccccceeEeCChHHHHHHHh------CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888 888989999999999997 888998 79999999999999999999999999999999999999995
Q ss_pred -EEEe--cCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc-cchhhhcCCCC
Q psy15359 214 -LQLF--ESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK-QGHNCYNYSNP 277 (281)
Q Consensus 214 -i~i~--d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~-~~~~~~~~~~~ 277 (281)
|.+. ++|+++|||++|++|++||+|++++.+++. | .++++|+||++. .++++.+++.+
T Consensus 231 ~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~--g----~~~ilh~cG~~~~~l~~l~~~g~~ 292 (378)
T cd03308 231 PVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR--G----QRIFLFFEGDWERYLEYLQELPKG 292 (378)
T ss_pred ceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc--C----CCEEEEcCCCcHHHHHHHHhcCCC
Confidence 4444 567889999999999999999999999986 5 799999999998 59999998876
No 13
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.97 E-value=7.2e-30 Score=228.84 Aligned_cols=220 Identities=24% Similarity=0.261 Sum_probs=189.5
Q ss_pred ccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeec-cccccchhcCCCEEEecCCCCCcCCC
Q psy15359 32 PIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIF-SDILVIPQALGMVVEMKPAVGPVLPE 110 (281)
Q Consensus 32 Pv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~-~d~~~~~ea~G~~~~~~~~~~p~~~~ 110 (281)
|++++++++++.+.++.+ +.++.+.+.+++.++++....+ +|+|++..+ +++..+++++|+.+.+.++.+|.+..
T Consensus 1 Pv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~g~D~~~~~~~~~~~~~ealg~~~~~~~~~~p~v~~ 76 (306)
T cd00465 1 PVQCEGQTGIMEASETMA--ISEEPGETSKAEWGITLVEPEE--IPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVPE 76 (306)
T ss_pred CeEEEccCccccHHHHhh--cCCchhhhCCchhhceeecccc--CCCCeeeecCcceeehhhhcCceEEecCCCCCCCCC
Confidence 788888888888766432 7889999999999999888776 999999999 99999999999999777666666543
Q ss_pred CCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHH
Q psy15359 111 PLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190 (281)
Q Consensus 111 ~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~ 190 (281)
++.+. .+.+++..+++++.++++. ++|+.+.+.||||++++++ +.+.++++++++|+.+++
T Consensus 77 ~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~GP~Tla~~l~------~~~~~~~~~~~~p~~~~~ 137 (306)
T cd00465 77 IDEEE-----------DPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSM------SMGDALMALYERPEAMHE 137 (306)
T ss_pred cccCC-----------ChhhHHHHHHHHHHHHhcc--ccceEeecCCHHHHHHHHH------cccHHHHHHHHChHHHHH
Confidence 32211 1257888999999998885 7899999999999999999 577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAE----YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 191 lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~----~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+++.+++.+++++++++++|+++|++.|++++ ++||++|++|++|++|++++.++.. + .++++|+||+..
T Consensus 138 ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~--~----~~~~lH~cg~~~ 211 (306)
T cd00465 138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAG--E----VPIVHHSCYDAA 211 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhc--C----CceEEEECCCHH
Confidence 99999999999999999999999999998864 2799999999999999999999875 5 789999999965
Q ss_pred -cchhhhcCCCCCCC
Q psy15359 267 -QGHNCYNYSNPMLS 280 (281)
Q Consensus 267 -~~~~~~~~~~~~~~ 280 (281)
.++++.+++.+.+|
T Consensus 212 ~~~~~l~~~~~d~~~ 226 (306)
T cd00465 212 DLLEEMIQLGVDVIS 226 (306)
T ss_pred HHHHHHHHhCcceEe
Confidence 69999999887765
No 14
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.91 E-value=2.3e-23 Score=186.94 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=109.4
Q ss_pred ccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEecCCCC----C
Q psy15359 149 VPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKA-GAQLLQLFESNAE----Y 223 (281)
Q Consensus 149 ~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~-G~d~i~i~d~~~~----~ 223 (281)
++......|||+++++|+ |+++++++|+++||.+|++|+++++.+++|+++++++ |+|+|+++|+|++ +
T Consensus 113 ~~~~~~~~Gpf~~a~~l~------g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~ 186 (321)
T cd03309 113 VIDVPLPGGVFERFRLRM------SMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF 186 (321)
T ss_pred eeccCCCCCHHHHHHHHH------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc
Confidence 334456689999999999 7999999999999999999999999999999999998 9999999998875 4
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc-ccchhhhcCCCCCCC
Q psy15359 224 LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP-KQGHNCYNYSNPMLS 280 (281)
Q Consensus 224 iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~-~~~~~~~~~~~~~~~ 280 (281)
|||++|+||++||+|||++.+|+.. + .++++|+||++ ..++++.+++.+.++
T Consensus 187 LSpe~f~efv~P~~krIi~~ik~~~-g----~piilH~cG~~~~~l~~~~e~g~dvl~ 239 (321)
T cd03309 187 ISPATFREFILPRMQRIFDFLRSNT-S----ALIVHHSCGAAASLVPSMAEMGVDSWN 239 (321)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcc-C----CceEEEeCCCcHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999863 4 79999999998 579999999887765
No 15
>PRK04326 methionine synthase; Provisional
Probab=99.23 E-value=2.3e-11 Score=110.37 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=118.2
Q ss_pred HHHHHHhHHHHcCCCee----------eeccccccchhcCCCEEEecCCCC---CcCCCCCCChHHHhcCCCCCCcccch
Q psy15359 65 AAEITLQPIRRFNLDAS----------IIFSDILVIPQALGMVVEMKPAVG---PVLPEPLVIPEDLKKLKTPVDVYKEL 131 (281)
Q Consensus 65 ~a~~~~~~~~~~~~D~~----------~~~~d~~~~~ea~G~~~~~~~~~~---p~~~~~i~~~eD~~~l~~~~d~~~~~ 131 (281)
.++..++.++++|+|.+ ...+....++.++|+.+++..... |.+..++ .. .+
T Consensus 47 a~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~~~~~~~~~~~~~~~P~v~g~~---------~~-~~----- 111 (330)
T PRK04326 47 AVRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGNNYFRKPSVVGKI---------EY-KE----- 111 (330)
T ss_pred HHHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCceeccCceeccccccccCCeEEEec---------cC-CC-----
Confidence 36777788999999998 334444455566777766532211 2221111 11 11
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15359 132 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGA 211 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~ 211 (281)
+..+++++.+++..++ .++.+.+.||+|++..+.. ++ ..+++|.++++ ++.+.++++++.++|+
T Consensus 112 ~~~l~~~~~~~~~~~~-~~vk~~l~GP~Tla~~~~~--------~~---y~~~~e~~~~l----~~~~~~~i~~l~~~G~ 175 (330)
T PRK04326 112 PMLVDEFEFAKSVTYT-RPVKVPITGPYTIAEWSFN--------EY---YKDKEELVFDL----AKVINEEIKNLVEAGA 175 (330)
T ss_pred CCcHHHHHHHHhcccC-CCceEeccCHHHHHhhccc--------cc---CCCHHHHHHHH----HHHHHHHHHHHHHCCC
Confidence 2345666777776544 7899999999999976541 11 12345555544 4778888889999999
Q ss_pred CEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCCC
Q psy15359 212 QLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 212 d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~~ 280 (281)
+.|++-||.... +|+.+ +++.++++++++.++ ..+.+|+| |+.. .++.|.+.+.+.+|
T Consensus 176 ~~iqidEP~l~~-~~~~~-~~~~~~l~~~~~~~~---------~~v~lH~C~G~~~~~~~~l~~~~vd~i~ 235 (330)
T PRK04326 176 KYIQIDEPALAT-HPEDV-EIAVEALNRIVKGIN---------AKLGLHVCYGDYSRIAPYILEFPVDQFD 235 (330)
T ss_pred CEEEecCchhhc-CHHHH-HHHHHHHHHHHhCCC---------CEEEEEEeCCCcHHHHHHHHhCCCCEEE
Confidence 988888876543 67877 888899999998662 46899999 8877 58888888887664
No 16
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=98.95 E-value=6.2e-09 Score=93.96 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
...++++.+++..++..++.+.+.||+|++..+.+ .+. .|+..+++++.+++.+.++++++.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~------~~~-------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~ 166 (321)
T cd03310 100 LELDYLEEVAEAYKEALKVKVVVTGPLTLALLAFL------PNG-------EPDAYEDLAKSLAEFLREQVKELKNRGIV 166 (321)
T ss_pred ccHHHHHHHHHhcCCCCceEEEecCHHhHhHhhcc------ccC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34566677777766668889999999999988872 221 17789999999999999999999999999
Q ss_pred EEEEecCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 213 LLQLFESNA--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 213 ~i~i~d~~~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
.|++.||.. ...| .++..++.+++++.+++.. + ..+.+|+||+ ..++.+.+.+.+.||
T Consensus 167 ~iqidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~-~----~~~~lHic~~-~~~~~l~~~~vd~l~ 226 (321)
T cd03310 167 VVQIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKS-G----GDVEVHLCAP-LDYEALLELGVDVIG 226 (321)
T ss_pred EEEeCCCcccccccc----ccchHHHHHHHHHHHhhcc-C----CceEEEECCC-CCHHHHHhCCCCEEE
Confidence 998888754 3455 6778899999999998622 3 4678999999 668888888877664
No 17
>PRK00957 methionine synthase; Provisional
Probab=98.71 E-value=7e-08 Score=86.63 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CC
Q psy15359 146 EGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA--EY 223 (281)
Q Consensus 146 ~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~--~~ 223 (281)
+++.++-+.+.||+|++..+. + ++++.++ .+++.+ ..+++...+.++++.++|++.|++-||.. +.
T Consensus 105 ~~~~~vK~~i~GP~Tla~~~~------~-~~~y~~~-~~~~~~----~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~ 172 (305)
T PRK00957 105 DPNKGVKGIITGPSTLAYSLR------V-EPFYSDN-KDEELI----YDLARALRKEAEALEKAGVAMIQIDEPILSTGA 172 (305)
T ss_pred CCCCceeEEecCHHHHHhhcc------c-ccccCCc-cHHHHH----HHHHHHHHHHHHHHHHcCCCEEEecChhhhcCC
Confidence 356789999999999998775 2 3344443 345554 44477888888888899999888888743 34
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc-chhhhcCCCCCCC
Q psy15359 224 LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ-GHNCYNYSNPMLS 280 (281)
Q Consensus 224 iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~-~~~~~~~~~~~~~ 280 (281)
.++ +++.++++++++.++ ..+.+|+||++.. ++.+.+.+.+.++
T Consensus 173 ~~~----~~~~~~~~~~~~~i~---------~~v~lH~CG~~~~i~~~l~~~~vd~i~ 217 (305)
T PRK00957 173 YDL----EVAKKAIDIITKGLN---------VPVAMHVCGDVSNIIDDLLKFNVDILD 217 (305)
T ss_pred chH----HHHHHHHHHHHHhhC---------CceEEEECCCcHHHHHHHHhCCCCEEE
Confidence 443 466788888888773 4678999999984 8888887776654
No 18
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=98.32 E-value=6.7e-07 Score=81.22 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=86.2
Q ss_pred ccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCHH
Q psy15359 149 VPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESN-AEYLDLD 227 (281)
Q Consensus 149 ~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~-~~~iSp~ 227 (281)
.++-+.+.||+|+++.+. +.... .+ ...+++++.+++.+.+.++++.++|++.|++-+|. +..++++
T Consensus 119 ~~lk~~l~GP~Tla~~~~------~~~~~---~y---~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSF------VRFRG---YY---PSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred ccccccCCCCeeECCchh------hcccc---cC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc
Confidence 567778899999988776 12111 22 33567999999999999999999999999888874 4457777
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCc----------c-cchhhhcCCCCCC
Q psy15359 228 LFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAP----------K-QGHNCYNYSNPML 279 (281)
Q Consensus 228 ~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~----------~-~~~~~~~~~~~~~ 279 (281)
++++..++.+++++.+.+...+ .++.+|+| |+. . .++.+.+.+.+.+
T Consensus 187 -~~~~~~~~~~~~~~~l~~~~~~----~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~ 245 (332)
T cd03311 187 -PDDLAADYLKWANEALADRPDD----TQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVF 245 (332)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCC----CEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEE
Confidence 8999999999999999863123 68899999 776 2 4666666555443
No 19
>PRK06233 hypothetical protein; Provisional
Probab=96.25 E-value=0.029 Score=51.80 Aligned_cols=117 Identities=18% Similarity=0.127 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
++..+.+++..+...++-.++.||.+++.... . ......|.+. .++++-+++...+-++++.++|++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~-------~-~~~~~~Y~~~---eel~~dlA~a~~~Ei~~L~~aG~~~I 188 (372)
T PRK06233 120 FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNR-------S-DNWPKFYDSW---DDYLDDLAQAYHDTIQHFYDLGARYI 188 (372)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcHHhccCcc-------c-ccccccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 45566666654445567788999998863111 1 1112345443 45677778888888889999999999
Q ss_pred EEecCC-CCCCC---H--------HHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc
Q psy15359 215 QLFESN-AEYLD---L--------DLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK 266 (281)
Q Consensus 215 ~i~d~~-~~~iS---p--------~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~ 266 (281)
++-|+. +.+.+ + +.+.++..-+.+-+...++.. | .+..+.+|+| ||..
T Consensus 189 QiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~-p---~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 189 QLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADL-P---EDLTVTTHICRGNFK 249 (372)
T ss_pred EEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCC-C---cCCEEEEEeeCCCCC
Confidence 888765 32211 1 124444444443333444332 1 1256788999 8763
No 20
>PRK01207 methionine synthase; Provisional
Probab=96.12 E-value=0.056 Score=49.19 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKA----- 209 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~----- 209 (281)
.+.++..++.. +.|+=+.+.||+|++.+.. ...|.+. .+++..+++.+.+-++.+.++
T Consensus 107 v~e~~~a~~~t--~kpvK~~ltGP~Ti~~~S~------------~~~Y~~~---~el~~~iA~al~~Ev~~L~~a~~~~~ 169 (343)
T PRK01207 107 LDEVEFVADNT--KKPIKVPITGPYTMMDWSF------------NDFYRDR---YDLAMEFARIINEELKDIKSAWDRKS 169 (343)
T ss_pred HHHHHHHHHcc--CCCcEEEecCHHHHHHHhc------------ccccCCH---HHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34444444442 4788899999999987654 1133333 234455556666667777788
Q ss_pred -CCC-EEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-C-Ccc-cchhhhcCCCCCC
Q psy15359 210 -GAQ-LLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-G-APK-QGHNCYNYSNPML 279 (281)
Q Consensus 210 -G~d-~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G-~~~-~~~~~~~~~~~~~ 279 (281)
|+. .|++-+|.-. ....+.++..-.++..++.+. ..+.+|+| | +.. .++.+.+...+.+
T Consensus 170 ~G~~~~IQiDEPal~--~~~~~l~~av~a~n~~~~gv~---------~~i~~H~C~g~~~~~i~~~i~~~~~d~~ 233 (343)
T PRK01207 170 PGRKLEIQIDEPATT--THPDEMDIVVDSINKSVYGID---------NEFSIHVCYSSDYRLLYDRIPELNIDGY 233 (343)
T ss_pred cCCceEEEEeCCCcC--CChHHHHHHHHHHHHHHhCCC---------CcEEEEEEcCCChHHHHHHHHhCCCCEE
Confidence 887 6888777632 122344443333333333332 35788999 6 343 5777777776654
No 21
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=95.89 E-value=0.067 Score=48.51 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=69.7
Q ss_pred ccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-C-CCCH
Q psy15359 149 VPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA-E-YLDL 226 (281)
Q Consensus 149 ~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~-~-~iSp 226 (281)
.++-..+.||+|.+.... .+ .|. ...+++..+++.+.+.++++.+ |++.|++-+|.- . .++.
T Consensus 128 ~~~K~vl~GP~T~~~~s~--------~~----~Y~---~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~ 191 (326)
T PRK08575 128 SKLKAVLPGPLTYAVLSD--------NE----YYK---NLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKR 191 (326)
T ss_pred CCccEEEecHHHHHHHhc--------cc----cCC---CHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCH
Confidence 356677899999875332 11 122 2456777778888888888778 999998888764 3 2433
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCc--ccchhhhcCCCCCC
Q psy15359 227 DLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAP--KQGHNCYNYSNPML 279 (281)
Q Consensus 227 ~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~--~~~~~~~~~~~~~~ 279 (281)
.+.+.+...++++.+.+ + .++.+|.| |.. ..++.+.+.+.+.|
T Consensus 192 -~~~~~~~~a~~~~~~~~-----~----~~i~l~tyfg~~~~~~~~~l~~~~vd~l 237 (326)
T PRK08575 192 -DTLEKLPEVYKTMAKNV-----N----IEKHLMTYFEINNLKRLDILFSLPVTYF 237 (326)
T ss_pred -HHHHHHHHHHHHHHhcC-----C----CCEEEECCCCCccccHHHHHhcCCCcEE
Confidence 34455555555555554 2 57899999 752 46888888877655
No 22
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=95.88 E-value=0.09 Score=47.97 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
++..+.+++.. +.++=+.+.||.+++..+. ...|.+. .++++-+++...+-++++.++|++.|
T Consensus 111 ~~~~~~~~~~~--~~~vK~~ipgP~tl~~~~~------------~~~Y~~~---~el~~dlA~al~~Ei~~L~~aG~~~I 173 (339)
T PRK09121 111 VEDAKFLRQQT--TQPIKWALPGPMTMIDTLY------------DDHYKSR---EKLAWEFAKILNQEAKELEAAGVDII 173 (339)
T ss_pred HHHHHHHHhcc--CCCceEEeCcHHHHHHHhc------------cccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34455555542 3467778899999986554 1235443 44566667777778888899999999
Q ss_pred EEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCc
Q psy15359 215 QLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAP 265 (281)
Q Consensus 215 ~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~ 265 (281)
++-|+.-. ..+ +. .....++++.+-+..+ ..+.+|+| |+.
T Consensus 174 QiDeP~l~~~~~-----~~-~~~~v~~~n~~~~g~~-----~~v~~HvC~G~~ 215 (339)
T PRK09121 174 QFDEPAFNVFFD-----EV-NDWGVAALERAIEGLK-----CETAVHICYGYG 215 (339)
T ss_pred EecccHHhhhhH-----HH-HHHHHHHHHHHHcCCC-----CceEEEEeCCCC
Confidence 88776532 221 11 2222333333322222 56889999 753
No 23
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=95.78 E-value=0.092 Score=48.44 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
++..+.+++.. +..++-..+.||.+++.... ........|.+. .++++-+++...+-++++.++|+..|
T Consensus 119 ~~~~~~l~~~~-~~~~~K~~ipgP~~l~~~~~-------~~~~~~~~Y~~~---~~~~~dlA~al~~Ei~~L~~aG~~~I 187 (368)
T PRK06520 119 LEDFRFLKSIS-GDATPKMTIPSPSVLHFRGG-------RKAIDATVYPDL---DDYFDDLAKTWRDAIKAFYDAGCRYL 187 (368)
T ss_pred HHHHHHHHhhc-cCCCCCEEcCcHHHHHhhcc-------ccccchhcCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34555555543 34466778899999874321 001112245543 45677777788888889999999999
Q ss_pred EEecCC-CCCCCHHH
Q psy15359 215 QLFESN-AEYLDLDL 228 (281)
Q Consensus 215 ~i~d~~-~~~iSp~~ 228 (281)
++-++. +.++++++
T Consensus 188 QiDep~l~~~~~~~~ 202 (368)
T PRK06520 188 QLDDTVWAYLCSDDQ 202 (368)
T ss_pred EecCcchhhccChhh
Confidence 888864 44566543
No 24
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=95.70 E-value=0.11 Score=46.98 Aligned_cols=76 Identities=8% Similarity=-0.009 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
+-+..+..+++.|...+|=+.+.||+|++.+...+ .++.+. .+.+..-+..++.+-++.+.++|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~-------~~Y~d~------~~~la~~ia~~l~~e~~~l~~~gv~~ 162 (344)
T PRK06052 96 IEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGG-------TIYTDI------LLILAKSVERFVENAIKSAKNFKIKT 162 (344)
T ss_pred HHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCC-------ccccch------HHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 33445566788888888999999999999998732 122332 24555666667777778888899999
Q ss_pred EEEecCCCC
Q psy15359 214 LQLFESNAE 222 (281)
Q Consensus 214 i~i~d~~~~ 222 (281)
|++-+|+-+
T Consensus 163 IqIDEP~l~ 171 (344)
T PRK06052 163 ISIDEPSLG 171 (344)
T ss_pred EEecCcccc
Confidence 988777643
No 25
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=95.08 E-value=0.24 Score=45.61 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
..++..+.+++. + .++-..+.||+|.+.... .+. -|.+ ..++++.++....+.++.+.++|++
T Consensus 135 ~~l~~~~~a~~~-~--~~~K~~i~GP~T~~~ls~-------~~~----~Y~~---~~el~~dla~~y~~el~~L~~aG~~ 197 (360)
T cd03312 135 KLLDEYLEAKAL-G--INTKPVLLGPVTFLKLSK-------AKG----GGFD---RLSLLDKLLPVYKELLKKLAAAGAE 197 (360)
T ss_pred hHHHHHHHHHhc-C--CCCcEEEECHHHHHHHhc-------ccc----cCCC---HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 345555555443 2 456667799999983332 000 0222 3466777888888888899999999
Q ss_pred EEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCC
Q psy15359 213 LLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPML 279 (281)
Q Consensus 213 ~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~ 279 (281)
.|++-+|.- ..++.+ +.+ ..+++++.+.+..|+ ..+.+|.| |+.. .++.+.+.+.+-+
T Consensus 198 ~IQiDEP~l~~~~~~~-~~~----~~~~~~~~l~~~~~~----~~l~l~tyfg~~~~~~~~l~~l~Vd~l 258 (360)
T cd03312 198 WVQIDEPALVLDLPEE-WLA----AFKRAYEELAKAAPG----LKLLLATYFGSLGENLDLLASLPVDGL 258 (360)
T ss_pred EEEeeCChhhcCCCHH-HHH----HHHHHHHHHhcCCCC----CcEEEEecccchHHHHHHHHcCCCCEE
Confidence 999988753 345543 222 234455555433223 57899999 7764 4677777776543
No 26
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=94.81 E-value=0.18 Score=50.90 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcC-CCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 134 VFEAITLTRHKLE-GKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 134 ~~~~~~~l~~~~~-~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
.++.++..++. | ...|| +.||+|.+..... + ...+.+ ..-.++++.++....+.++.+.++|++
T Consensus 137 ~l~e~~eA~~~-g~~~kpV---l~GP~T~l~Lsk~-------~---~~~~~~-~~~~~ll~~L~~~y~~~l~~L~~~Gv~ 201 (766)
T PLN02475 137 AVNEYKEAKAL-GVDTVPV---LVGPVSYLLLSKP-------A---KGVDKS-FDLLSLLDKILPVYKEVIAELKAAGAS 201 (766)
T ss_pred hHHHHHHHHHc-CCCCCcE---EECHHHHHHHhcc-------c---ccccCC-CCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34444444433 3 23566 6899998765431 0 001111 114467788888888899999999999
Q ss_pred EEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc--cchhhhcCC-CCC
Q psy15359 213 LLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK--QGHNCYNYS-NPM 278 (281)
Q Consensus 213 ~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~--~~~~~~~~~-~~~ 278 (281)
.|++-+|.-. -+++ .+.+.+...++++.+.+. + .++++|.| |+.. .++.+.+.| .+-
T Consensus 202 ~IQiDEP~L~~d~~~-~~~~~~~~ay~~l~~~~~----~----~~i~l~TyFg~~~~~~~~~l~~lp~Vd~ 263 (766)
T PLN02475 202 WIQFDEPALVMDLES-HKLQAFKTAYAELESTLS----G----LNVLVETYFADVPAEAYKTLTSLKGVTA 263 (766)
T ss_pred EEEEeCchhhcCCCH-HHHHHHHHHHHHHHhccC----C----CeEEEEccCCCCCHHHHHHHHcCCCCCE
Confidence 9988887643 3544 455655555566555442 3 58899999 8876 488888887 554
No 27
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=94.65 E-value=0.25 Score=49.90 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
++..+..++ ++ +.++-+.+.||+|++.... . ++ + -.-.++++.++....+.++.+.++|+..|
T Consensus 530 v~~~~~aq~-lt-~~~vK~~LtGPvT~l~~s~--------~---r~---d-~~~~~~~~~la~a~~~ev~~L~~aG~~~I 592 (750)
T TIGR01371 530 VKWSVYAQS-LT-SKPVKGMLTGPVTILNWSF--------V---RD---D-IPRKEIAYQIALAIRDEVLDLEEAGIKII 592 (750)
T ss_pred hHHHHHHHh-cc-CCCCceEEechHHHHhhhh--------h---cc---C-CCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 344444433 33 3577888899999874322 0 10 1 12456778888888888888899999999
Q ss_pred EEecCCC--CC-CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCCC
Q psy15359 215 QLFESNA--EY-LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 215 ~i~d~~~--~~-iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~~ 280 (281)
++-+|.- ++ +..+.+.++..-..+.+...+.....+ ..+.+|+| |+.. .++.+.+.+.+.++
T Consensus 593 QIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~----~~I~~H~C~g~~~~i~~~l~~l~vD~i~ 659 (750)
T TIGR01371 593 QIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDE----TQIHTHMCYSEFNEIIESIADLDADVIS 659 (750)
T ss_pred EEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCC----CEEEEEEECCCcHHHHHHHHhCCCCEEE
Confidence 8877652 21 333444444433333222222211102 46789999 5654 46777776666543
No 28
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=94.57 E-value=0.19 Score=50.62 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
..++.++..++. | .++-..+.||+|.+...... + -+.+ -.++++.++....+.++.+.++|++
T Consensus 131 ~~~~e~~~A~~~-g--~~~Kpvl~GP~T~l~lsk~~----~-------~y~~---~~~ll~~L~~~y~~~l~~L~~~G~~ 193 (750)
T TIGR01371 131 KPLEEYLEAKEL-G--IETKPVLLGPITFLKLSKAV----E-------EPFE---PLSLLEKLLPVYKEVLKKLAEAGAT 193 (750)
T ss_pred hHHHHHHHHHhc-C--CCCeEEEECHHHHHHHhCcc----C-------CCCC---HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344555555432 3 45556678999987654210 0 1222 3356777788888888888999999
Q ss_pred EEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCC
Q psy15359 213 LLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPML 279 (281)
Q Consensus 213 ~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~ 279 (281)
.|++-+|.-. -++++ +.+.+...++++...+ ++ .++++|+| |+.. .++.+.+.|.+.|
T Consensus 194 ~IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~~~----~~----~ki~l~tyFg~~~~~~~~l~~lpvd~l 254 (750)
T TIGR01371 194 WVQIDEPALVTDLSKE-DLAAFKEAYTELSEAL----SG----LKLLLQTYFDSVGDALEALVSLPVKGI 254 (750)
T ss_pred EEEeeCchhcCCCCHH-HHHHHHHHHHHHHhcc----CC----ceEEEECCCCchHHHHHHHHcCCCCEE
Confidence 9988887643 35444 4443333334443322 23 57899999 8876 4888888877654
No 29
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=94.14 E-value=0.46 Score=48.00 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred CccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CC--
Q psy15359 148 KVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA--EY-- 223 (281)
Q Consensus 148 ~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~--~~-- 223 (281)
+.|+=+.+.||.|++.+.. . ++ +.+ -.+++..++..+.+-++.+.++|+..|++-++.- ++
T Consensus 552 ~~~vK~~ltGP~Ti~~~s~-------~----r~-~~~---~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~ 616 (766)
T PLN02475 552 KRPMKGMLTGPVTILNWSF-------V----RN-DQP---RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 616 (766)
T ss_pred CCccceEEecHHHHHhhhh-------c----cc-CCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCc
Confidence 3478889999999875443 1 10 111 4566777777788888888999999999877642 21
Q ss_pred --CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCC
Q psy15359 224 --LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPML 279 (281)
Q Consensus 224 --iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~ 279 (281)
...+.|.+++...++...+.++. + ..+.+|+| |+.. .++.+.+...+.+
T Consensus 617 ~~~~~~~~l~~av~af~~~~~~v~~---~----~~I~~H~C~gnf~~I~~~i~~l~~D~~ 669 (766)
T PLN02475 617 RKSEHAFYLDWAVHSFRITNCGVQD---T----TQIHTHMCYSNFNDIIHSIIDMDADVI 669 (766)
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCC---C----CEEEEEEecCCcHHHHHHHHhCCCCEE
Confidence 22344444443333333333321 2 45778999 8765 4666766665554
No 30
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=93.87 E-value=0.29 Score=49.48 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+..+.+++.. +.++=+.+.||.|++.... . + .+ . ...+++..++..+.+-++.+.++|+..|+
T Consensus 537 ~~~~~aq~~t--~~~vK~~ltGP~T~~~~s~-~-------r--~~-~----~~~e~~~dlA~al~~Ev~~L~~aG~~~IQ 599 (758)
T PRK05222 537 EWIKYAQSLT--DKPVKGMLTGPVTILNWSF-V-------R--DD-Q----PREETARQIALAIRDEVLDLEAAGIKIIQ 599 (758)
T ss_pred HHHHHHHhcc--CCCCcEEEecHHHHHHHHh-c-------c--cC-C----CHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4444444432 3577788999999875433 0 0 00 1 23556777777788888888999999999
Q ss_pred EecCCC--CC-C---CHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCC
Q psy15359 216 LFESNA--EY-L---DLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPML 279 (281)
Q Consensus 216 i~d~~~--~~-i---Sp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~ 279 (281)
+-++.- ++ + ..+.|.++....++..++.+.. + ..+.+|+| |+.. .++.+.+...+.+
T Consensus 600 iDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~---~----~~i~tH~C~g~~~~i~~~i~~l~vD~~ 664 (758)
T PRK05222 600 IDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKD---E----TQIHTHMCYSEFNDIIDAIAALDADVI 664 (758)
T ss_pred eeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCC---C----CEEEEEEeccChHHHHHHHHhCCCCEE
Confidence 877642 22 2 3444555554444433333321 2 56789999 8765 5676766665554
No 31
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=92.08 E-value=0.86 Score=41.14 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=59.1
Q ss_pred ccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCHH
Q psy15359 149 VPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA-EYLDLD 227 (281)
Q Consensus 149 ~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~-~~iSp~ 227 (281)
.++-..+.||+|++.... .+ ......+++.-+.+...+-++++.++|+..|++=+|.- ..++..
T Consensus 121 ~~vK~~i~gP~tl~~~~~-------~~--------~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~ 185 (324)
T PF01717_consen 121 KPVKGTITGPSTLADPSA-------NR--------YYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDA 185 (324)
T ss_dssp SSBEEEEE-HHHHHHTSE-------ES--------SSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSS
T ss_pred cccccccCHHHHhhchhc-------cc--------cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhh
Confidence 457778889999876554 11 12234556666667777778888999999988877742 221111
Q ss_pred H--HHH-HhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc--chhhhcCCCCC
Q psy15359 228 L--FKE-FALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ--GHNCYNYSNPM 278 (281)
Q Consensus 228 ~--f~e-f~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~--~~~~~~~~~~~ 278 (281)
. -.+ +-.....+.++.+-+ +.+..+.+|+|+.... +..+.+.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~~H~C~~~~~~~~~~l~~~~vd~ 236 (324)
T PF01717_consen 186 SFDRDEYLDEAVAAEALNRAVK-----GEDATVGVHVCRGNYPSILPLLADLNVDA 236 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-----TTTSEEEEEESSSCHCTTHHHHHCSS-SE
T ss_pred cccHHHHHHHHHHHHHHHhccC-----CCCCEEEEEecCccchhhHHHHhhcccce
Confidence 1 111 111122233332221 1237899999998653 24555555443
No 32
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=91.82 E-value=0.65 Score=42.18 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred HHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q psy15359 139 TLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 139 ~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d 218 (281)
...++ +.. .|+-+.+.||.|++.+-. .+ +...-+++...++..+-+-++.+.++|+..|++-+
T Consensus 117 ~~a~~-~~~-~~~K~~ltGP~ti~~~s~--------~~-------~~~~~~el~~~iA~al~~ev~~l~~agi~~iQiDE 179 (330)
T COG0620 117 LYAQS-LTE-KPVKGMLTGPVTILLWSF--------NR-------YYISREELAKDIALALRDEVKDLEDAGIKIIQIDE 179 (330)
T ss_pred hhhhh-ccC-ccceeeeccHHhhHhhhc--------cc-------cCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEeech
Confidence 33444 344 788888999999655433 11 12234566677777777888888999999998877
Q ss_pred CC-CCCCCH---HHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCC
Q psy15359 219 SN-AEYLDL---DLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNP 277 (281)
Q Consensus 219 ~~-~~~iSp---~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~ 277 (281)
+. +..+.. +.|.+.+.......+..... + ..+-+|+|.+.. .++.+-+|..+
T Consensus 180 pal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d----~~i~~HiCy~e~~~~~~~i~~ld~d 237 (330)
T COG0620 180 PALREGLPLRRDDDYLEWAVEAINLAAAGVGA---D----TQIHLHICYSEFNDIPDAIEALDAD 237 (330)
T ss_pred hhhhcCCccccchHHHHHHHHHHHHHHhcCCC---C----cEEEEEEECCcccchhHHHhhcCCc
Confidence 54 221222 22334333333333332221 2 678899998842 23444444443
No 33
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=91.19 E-value=2.2 Score=43.23 Aligned_cols=120 Identities=15% Similarity=0.028 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
..++..+.+++. +.++-..+.||+|.+.... . ..-+.+ -.++++.++....+.++.+.++|++
T Consensus 137 ~~l~e~~~ak~~---g~~~K~vl~GP~T~l~ls~------~-----~~~~~~---~~ell~dl~~~y~~~l~~L~~aG~~ 199 (758)
T PRK05222 137 KLLDEFEEAKAL---GINTKPVLLGPVTFLWLSK------S-----KGEGFD---RLDLLDDLLPVYAELLAELAAAGAE 199 (758)
T ss_pred cHHHHHHHHHhC---CCCceEEEccHHHHHHHhc------c-----cccCCC---HHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 455666666554 3566678899999983332 1 001112 3567788888888889999999999
Q ss_pred EEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCC
Q psy15359 213 LLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPM 278 (281)
Q Consensus 213 ~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~ 278 (281)
.|++-+|.- ..++++ +.+.+ ++.+..+.+..++ ..+++|+| |+.. .++.+.+.+.+-
T Consensus 200 ~IQiDEP~l~~~~~~~-~~~~~----~~~y~~l~~~~~~----~~i~l~tyfg~~~~~~~~l~~l~Vd~ 259 (758)
T PRK05222 200 WVQIDEPALVLDLPQE-WLEAF----KRAYEALAAAKPR----PKLLLATYFGSLNDALDLLASLPVDG 259 (758)
T ss_pred EEEeeCchhhcCCCHH-HHHHH----HHHHHHHhcCCCC----CCEEEEeeccchhhHHHHHHcCCCCE
Confidence 999988753 446654 22322 3333334332112 57889999 6654 366666666553
No 34
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.55 E-value=1.7 Score=40.26 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ 267 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~ 267 (281)
+...++++.+.+.|+|-|+|-| .+|.++|..- .+++..+|+.. + +|+.+|++-..+.
T Consensus 156 e~yv~~akel~~~g~DSIciKD-maGlltP~~a--------yelVk~iK~~~-~----~pv~lHtH~TsG~ 212 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKD-MAGLLTPYEA--------YELVKAIKKEL-P----VPVELHTHATSGM 212 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeec-ccccCChHHH--------HHHHHHHHHhc-C----CeeEEecccccch
Confidence 3455778889999999987765 4557888753 46778888876 4 8999999988763
No 35
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=87.12 E-value=2.8 Score=40.21 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCCcEEEEecCCcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK-QMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~-~~~~~~~~ilH~cG~~~ 266 (281)
-.+..+++++.+.++|+|.|.+.|..| .+.|+... +++..+++..| + +++-+|++-+.+
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkDtaG-ll~P~~~~--------~LV~~Lk~~~~~~----ipI~~H~Hnt~G 212 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKDMAA-LLKPQPAY--------DIVKGIKEACGED----TRINLHCHSTTG 212 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcc-CCCHHHHH--------HHHHHHHHhCCCC----CeEEEEeCCCCC
Confidence 345667788888899999998877655 68888744 45556666543 4 789999987765
No 36
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=86.39 E-value=3.6 Score=36.36 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+..+++++.+.+.|++.|.+.|..| .++|....++ ++.+++..|+ +++-+|++-+.+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~----~~i~~H~Hnd~G 205 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIG-VATPAQVRRL--------LEAVLERFPD----EKLALHFHDTRG 205 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-ccCHHHHHHH--------HHHHHHHCCC----CeEEEEECCCCC
Confidence 4566777777789999988877766 4788876555 4445554445 788999988765
No 37
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=86.09 E-value=3.8 Score=35.03 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++++.++|++.|.+.|+.| .++|.... +++..+++..|+ +++-+|++-+..
T Consensus 138 ~~~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~--------~lv~~~~~~~~~----~~l~~H~Hnd~G 193 (237)
T PF00682_consen 138 ELLELAEALAEAGADIIYLADTVG-IMTPEDVA--------ELVRALREALPD----IPLGFHAHNDLG 193 (237)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTS--S-HHHHH--------HHHHHHHHHSTT----SEEEEEEBBTTS
T ss_pred HHHHHHHHHHHcCCeEEEeeCccC-CcCHHHHH--------HHHHHHHHhccC----CeEEEEecCCcc
Confidence 344556667778999998888776 47887644 556667766554 678899988765
No 38
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=85.50 E-value=3.3 Score=36.85 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+..++.++.+.++|+|.|.+.|..| .++|....+. +..+++..++ +++-+|++-+.+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~----~~i~~H~Hn~~G 211 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIG-VGTPGQVRAV--------LEAVLAEFPA----ERLAGHFHDTYG 211 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccC-ccCHHHHHHH--------HHHHHHhCCC----CeEEEEecCCCC
Confidence 4667778888899999988877765 5788876554 4445444444 688999998765
No 39
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.31 E-value=3.2 Score=36.84 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+.++++.+++.|++++++..+.+. .||.+..++++ +.+++.+.. . +|++.|++.++
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~----~~~~~~~~~---~----~pvi~gv~~~t 80 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVV----RAAVEETAG---R----VPVLAGAGYGT 80 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---C----CCEEEecCCCH
Confidence 445566677899999988887774 49999988774 344444432 3 78999987644
No 40
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=84.51 E-value=4.6 Score=38.31 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+..++.++.+.++|+|.|.+.|..| .+.|....+ ++..+++.. + +++-+|++-+.+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------lv~alk~~~-~----~pi~~H~Hnt~G 209 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAG-ILTPYVAYE--------LVKRIKEAV-T----VPLEVHTHATSG 209 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhc-C----CeEEEEecCCCC
Confidence 4456777778899999998877665 688887544 666676654 4 789999987765
No 41
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.16 E-value=5.3 Score=35.41 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.+++++.+.++|++.|.+.|..| .++|.... ++++.+++..|+ .++-+|++-+.+
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~--------~l~~~l~~~~~~----~~i~~H~Hnd~G 203 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLG-ILSPFETY--------TYISDMVKRYPN----LHFDFHAHNDYD 203 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CCCHHHHH--------HHHHHHHhhCCC----CeEEEEeCCCCC
Confidence 556677778889999998888766 57887644 445555554445 678889887665
No 42
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.32 E-value=5.3 Score=34.54 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
..+.++.+.++|++.|.+.|..+ .++|+.++++ ++.+++..++ +++-+|++-+..
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~l--------i~~l~~~~~~----~~~~~H~Hn~~g 202 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVG-LATPEEVAEL--------VKALREALPD----VPLGLHTHNTLG 202 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcC-CcCHHHHHHH--------HHHHHHhCCC----CeEEEEeCCCCC
Confidence 45566677889999998877755 5999887666 4444444333 678889887765
No 43
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=83.05 E-value=6.3 Score=34.44 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+..++.++++.++|+|.|.+.|+.| .+.|+...+ ++..+++..+. +++-+|++-+.+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~--------lv~~l~~~~~~----~~l~~H~Hn~~G 197 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAG-AMLPDDVRE--------RVRALREALDP----TPVGFHGHNNLG 197 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CcCHHHHHH--------HHHHHHHhCCC----ceEEEEecCCcc
Confidence 4456667777889999998877776 588887554 44455554422 378899987765
No 44
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=82.97 E-value=5.4 Score=38.04 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+..++.++.+.++|+|.|.+.|..| .+.|.... +++..+++.. + +++-+|++-+.+
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~--------~Lv~~lk~~~-~----vpI~~H~Hnt~G 208 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAG-LLTPKRAY--------ELVKALKKKF-G----VPVEVHSHCTTG 208 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccC-CcCHHHHH--------HHHHHHHHhc-C----CceEEEecCCCC
Confidence 35566777888899999998877665 57887754 4556666654 3 789999988765
No 45
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=82.74 E-value=4.3 Score=36.33 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
.+.++.+++.|++++++..+.+. .+|++..++++ +.+.+.+.. . +|++.|+++++
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~----~pvi~gv~~~t 87 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVV----RAAVETTAG---R----VPVIAGAGGGT 87 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---C----CcEEEecCCCH
Confidence 34555667889999988887764 49999987763 334444432 3 78999997644
No 46
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.37 E-value=6.1 Score=37.64 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
-.++.++.++.+.++|+|.|.+.|..| .++|+...+ ++..+++. ++ +++-+|++-+.+
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG-~l~P~~v~~--------Lv~alk~~-~~----~pi~~H~Hnt~G 218 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAG-ILTPKAAKE--------LVSGIKAM-TN----LPLIVHTHATSG 218 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHH--------HHHHHHhc-cC----CeEEEEeCCCCc
Confidence 456677888888899999988877655 688887544 44555553 35 789999988765
No 47
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=81.85 E-value=5.8 Score=35.48 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...+.++.+++.|+|+|++..+.|. .+|.+...+. .+.+++.++.. +|+|.+..++.+
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~gr-------vpviaG~g~~~t 85 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGGR-------VPVIAGVGSNST 85 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCCC-------CcEEEecCCCcH
Confidence 3445566778999999988887774 4999987665 23444444432 789999998865
No 48
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=81.71 E-value=5.4 Score=35.29 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.|. .||.+.+++.+ +.+.+.++. . ++++.|++.+..
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~----~~vi~gv~~~s~ 79 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVI----EFVVDLVNG---R----VPVIAGTGSNAT 79 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHH----HHHHHHhCC---C----CeEEEeCCCccH
Confidence 3445666777899999988777764 49999988874 444555543 2 788888877543
No 49
>PLN02801 beta-amylase
Probab=81.60 E-value=2 Score=40.88 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| +.|-|=+. -+|+ +|-|-+++++++.+++. | .+ ..+|-||.
T Consensus 41 ~~L~~LK~~GVdGV-mvDVWWGiVE~~~P~---~YdWsgY~~l~~mvr~~--G----LKlq~vmSFHqCGG 101 (517)
T PLN02801 41 KQLKRLKEAGVDGV-MVDVWWGIVESKGPK---QYDWSAYRSLFELVQSF--G----LKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHcCCCEE-EEeeeeeeeccCCCC---ccCcHHHHHHHHHHHHc--C----CeEEEEEEecccCC
Confidence 34566778999997 55654332 3454 56799999999999987 4 43 46787875
No 50
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=81.08 E-value=6.6 Score=38.63 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+..+++++.+.++|+|.|.+.|..| .+.|+... +++..+++.. + +++-+|++-+.+
T Consensus 153 ~e~~~~~ak~l~~~Gad~I~IkDtaG-~l~P~~v~--------~lv~alk~~~-~----ipi~~H~Hnt~G 209 (596)
T PRK14042 153 LDNFLELGKKLAEMGCDSIAIKDMAG-LLTPTVTV--------ELYAGLKQAT-G----LPVHLHSHSTSG 209 (596)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCccc-CCCHHHHH--------HHHHHHHhhc-C----CEEEEEeCCCCC
Confidence 34566778888899999988877654 68888754 4555555543 4 789999998765
No 51
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.00 E-value=6.1 Score=35.51 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|+++|++..+.|. .||.+..++++. ...+.+.. . +|++.|+.++.+
T Consensus 31 l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~----~~~~~~~g---r----vpvi~Gv~~~~t 89 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVA----TVVETVAG---R----VPVFVGATTLNT 89 (309)
T ss_pred HHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHH----HHHHHhCC---C----CCEEEEeccCCH
Confidence 345566778899999988888774 499999887654 33333432 3 788888876543
No 52
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=80.81 E-value=5.7 Score=35.25 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+++.|++++++..+.+. .+|++.+.+++ +.+.+.++. . ++++.|+++..+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~----~~~~~~~~~---~----~~vi~gv~~~~~ 82 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELI----RAVVEAVNG---R----VPVIAGTGSNST 82 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHH----HHHHHHhCC---C----CcEEeecCCchH
Confidence 3445566677899999988777764 49999988773 344444432 3 789999988543
No 53
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=80.77 E-value=8.5 Score=33.90 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
..+++++.+.++|++.|.+.|..| .++|+...+++ +.+++..|+ +++-+|++-+..
T Consensus 152 ~~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~----~~l~~H~Hnd~G 207 (273)
T cd07941 152 YALATLKAAAEAGADWLVLCDTNG-GTLPHEIAEIV--------KEVRERLPG----VPLGIHAHNDSG 207 (273)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHH--------HHHHHhCCC----CeeEEEecCCCC
Confidence 344555666778999988877776 58888765554 455554444 678889887654
No 54
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.12 E-value=7.4 Score=38.26 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|+|.|.+.|..| .++|.. ..+++..+++.. + +++-+|++-+..
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G-~~~P~~--------v~~lv~~lk~~~-~----~pi~~H~Hnt~G 204 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAG-ILTPKA--------AYELVSALKKRF-G----LPVHLHSHATTG 204 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-CcCHHH--------HHHHHHHHHHhC-C----CceEEEecCCCC
Confidence 5566777888899999998877665 577876 345566666654 3 688899887765
No 55
>PLN02905 beta-amylase
Probab=79.45 E-value=2.3 Score=41.43 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| +.|-|=+. =+| .+|-|-+++++++.+++. | .+ ..+|-||-
T Consensus 290 a~L~aLK~aGVdGV-mvDVWWGiVE~~gP---~~YdWsgY~~L~~mvr~~--G----LKlqvVMSFHqCGG 350 (702)
T PLN02905 290 KQLRILKSINVDGV-KVDCWWGIVEAHAP---QEYNWNGYKRLFQMVREL--K----LKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHcCCCEE-EEeeeeeeeecCCC---CcCCcHHHHHHHHHHHHc--C----CeEEEEEEecccCC
Confidence 44566778999997 55655333 345 456799999999999987 4 33 56787775
No 56
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=79.26 E-value=8 Score=38.09 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+..++.++.+.++|+|.|.+.|..| .+.|... .+++..+++.. + +++-+|++-+.+
T Consensus 153 ~~~~~~~a~~l~~~Gad~I~i~Dt~G-~~~P~~~--------~~lv~~lk~~~-~----~pi~~H~Hnt~G 209 (592)
T PRK09282 153 IEKYVELAKELEEMGCDSICIKDMAG-LLTPYAA--------YELVKALKEEV-D----LPVQLHSHCTSG 209 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCC-CcCHHHH--------HHHHHHHHHhC-C----CeEEEEEcCCCC
Confidence 35667788888899999998887766 4777765 55666666654 3 788899988765
No 57
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=78.97 E-value=9.6 Score=34.69 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCEEEEecCC-CCCCC----HHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEE
Q psy15359 188 SKKLLEILTNVIVDYLVGQAKAG--AQLLQLFESN-AEYLD----LDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIF 260 (281)
Q Consensus 188 v~~lle~i~d~~i~~~~~~~e~G--~d~i~i~d~~-~~~iS----p~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH 260 (281)
+.++.+.+.+++...++++.++| .+.|.+..-. .++|. +..|..+.. +++.-++++++..|+ +++++|
T Consensus 101 ~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~-ll~ag~~AVr~~~p~----~kV~lH 175 (332)
T PF07745_consen 101 FDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAK-LLNAGIKAVREVDPN----IKVMLH 175 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHH-HHHHHHHHHHTHSST----SEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHH-HHHHHHHHHHhcCCC----CcEEEE
Confidence 45566778888888999999999 4777777532 23443 566766555 778888999987777 899999
Q ss_pred ecCCc
Q psy15359 261 AKGAP 265 (281)
Q Consensus 261 ~cG~~ 265 (281)
+.+-.
T Consensus 176 ~~~~~ 180 (332)
T PF07745_consen 176 LANGG 180 (332)
T ss_dssp ES-TT
T ss_pred ECCCC
Confidence 87543
No 58
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=78.91 E-value=10 Score=33.38 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++..++++.+.++|++.|.+.|+.| .+.|+...+ +++.+++.. + +++-+|++-+..
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~--------lv~~l~~~~-~----~~l~~H~Hnd~G 204 (275)
T cd07937 149 EYYVKLAKELEDMGADSICIKDMAG-LLTPYAAYE--------LVKALKKEV-G----LPIHLHTHDTSG 204 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhC-C----CeEEEEecCCCC
Confidence 3445566677789999998888776 477876544 444555543 3 578888887664
No 59
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=78.71 E-value=11 Score=33.13 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK-QMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~-~~~~~~~~ilH~cG~~~ 266 (281)
+...++++.+.++|++.|.+.|+.| .+.|+...+++. .+++..+ + +++-+|++-+..
T Consensus 138 ~~~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~~~~----~~i~~H~Hn~~G 195 (266)
T cd07944 138 EELLELLELVNEIKPDVFYIVDSFG-SMYPEDIKRIIS--------LLRSNLDKD----IKLGFHAHNNLQ 195 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHH--------HHHHhcCCC----ceEEEEeCCCcc
Confidence 4455667777889999998888776 588887665543 3433321 3 678899987764
No 60
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=78.52 E-value=10 Score=34.74 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+..+++++.+.++|++.|.+.|..| ...|....+++ +.+++..+. .++-+|++-+..
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G-~a~P~~v~~lv--------~~l~~~~~~----~~i~~H~Hnd~G 253 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIG-VGTPGTVVPML--------EAVMAVVPV----DKLAVHFHDTYG 253 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcC-CcCHHHHHHHH--------HHHHHhCCC----CeEEEEECCCCC
Confidence 4567778888999999998888766 47787755544 344443332 467889887765
No 61
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=78.28 E-value=8.5 Score=33.80 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.+.++++.+++.|++++++..+.+. .+|.+..++.+. .+.+.++. . ++++.|+.+..+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~----~~~~~~~~---~----~~vi~gv~~~~~ 78 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIE----AVVEAVAG---R----VPVIAGVGANST 78 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHH----HHHHHhCC---C----CeEEEecCCccH
Confidence 34556667778889999988887764 499998877643 33444432 3 789999988654
No 62
>PLN02705 beta-amylase
Probab=77.24 E-value=2.6 Score=41.02 Aligned_cols=54 Identities=6% Similarity=0.058 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| +.|-|=+. =+|+ +|-|-+++++++.+++. | .+ ..+|-||-
T Consensus 272 a~L~aLK~aGVdGV-mvDVWWGiVE~~~P~---~YdWsgY~~L~~mvr~~--G----LKlqvVmSFHqCGG 332 (681)
T PLN02705 272 QELSHMKSLNVDGV-VVDCWWGIVEGWNPQ---KYVWSGYRELFNIIREF--K----LKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHcCCCEE-EEeeeeeEeecCCCC---cCCcHHHHHHHHHHHHc--C----CeEEEEEEeeccCC
Confidence 34566778999997 55755333 3454 56799999999999987 4 33 55786764
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=76.55 E-value=14 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+...+.++++.++|++.|.+.|+.| .+.|+...++ +..+++.. + +++-+|++-+..
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~-~----~~l~~H~Hn~~G 194 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVG-ILDPFTTYEL--------IRRLRAAT-D----LPLEFHAHNDLG 194 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCC-CCCHHHHHHH--------HHHHHHhc-C----CeEEEEecCCCC
Confidence 3455666777788999998888776 4778776554 44444443 2 678889887765
No 64
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.24 E-value=11 Score=37.08 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++..+.++.+.++|+|.|.+.|..| .+.|....+ ++..+++.. + +++-+|++-+.+
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G-~l~P~~~~~--------lv~~lk~~~-~----~pi~~H~Hnt~G 210 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAG-LLKPYAAYE--------LVSRIKKRV-D----VPLHLHCHATTG 210 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHH--------HHHHHHHhc-C----CeEEEEECCCCc
Confidence 56777888888899999998877665 577877544 445555543 4 788899988765
No 65
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=75.60 E-value=13 Score=33.82 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh-ccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-KQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~-~~~~~~~~~ilH~cG~~~ 266 (281)
+..++.++.+.++|++.|.+.|+.| .+.|+...+.+ ..+++.. ++ +++-+|++-+..
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G-~~~P~~v~~~v--------~~l~~~l~~~----i~ig~H~HnnlG 200 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAG-AMLPDDVRDRV--------RALKAVLKPE----TQVGFHAHHNLS 200 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCC-CCCHHHHHHHH--------HHHHHhCCCC----ceEEEEeCCCCc
Confidence 4566778888899999988877766 47888755544 4444432 23 678999987765
No 66
>PLN02803 beta-amylase
Probab=75.37 E-value=3 Score=39.97 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| +.|-|=+. =+| .+|-|-+++++++.+++. | .+ .-+|-||-
T Consensus 111 ~~L~~LK~~GVdGV-mvDVWWGiVE~~~p---~~YdWsgY~~l~~mvr~~--G----LKlq~vmSFHqCGG 171 (548)
T PLN02803 111 ASLMALRSAGVEGV-MVDAWWGLVEKDGP---MKYNWEGYAELVQMVQKH--G----LKLQVVMSFHQCGG 171 (548)
T ss_pred HHHHHHHHcCCCEE-EEEeeeeeeccCCC---CcCCcHHHHHHHHHHHHc--C----CeEEEEEEecccCC
Confidence 34566778999997 55654333 345 456799999999999987 4 43 55787775
No 67
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.67 E-value=10 Score=33.36 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.+. .+|.+.+++++. .+.+.+.. . ++++.++++...
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~----~~~~~~~~---~----~~vi~gv~~~~~ 81 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIE----AVVEAVNG---R----VPVIAGTGSNNT 81 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHH----HHHHHhCC---C----CcEEeccCCccH
Confidence 4455666778899999988777664 499999887743 33333322 3 688888888543
No 68
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=74.39 E-value=12 Score=33.01 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+...++++.+++.|++++.+..+.+. .||.+.+++++ +.+.+.++. . ++++.++.+..+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~----~~~~~~~~~---~----~~vi~gv~~~st 82 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELL----EIVVEAAAG---R----VPVIAGVGANST 82 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHH----HHHHHHHTT---S----SEEEEEEESSSH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHccC---c----eEEEecCcchhH
Confidence 44556677778999999988877764 39999987663 334444432 3 788888776543
No 69
>PLN00197 beta-amylase; Provisional
Probab=74.15 E-value=3.3 Score=39.85 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| +.|-|=+. =+| .+|-|-+++++++.+++. | .+ ..+|-||-
T Consensus 131 ~~L~~LK~~GVdGV-mvDvWWGiVE~~~p---~~YdWsgY~~L~~mvr~~--G----LKlq~VmSFHqCGG 191 (573)
T PLN00197 131 ASLQALKSAGVEGI-MMDVWWGLVERESP---GVYNWGGYNELLEMAKRH--G----LKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHcCCCEE-EEeeeeeeeccCCC---CcCCcHHHHHHHHHHHHc--C----CeEEEEEEecccCC
Confidence 34566778999997 55654333 345 456799999999999987 4 33 55787775
No 70
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=73.45 E-value=17 Score=31.80 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...+.++.+.++|++.|.+.|..| .++|+...+++ ..+++..++ ..+++-+|++-+..
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~--~~i~l~~H~Hn~~G 201 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVG-YLTPEEFGELI--------KKLKENVPN--IKVPISVHCHNDLG 201 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC-CCCHHHHHHHH--------HHHHHhCCC--CceeEEEEecCCcc
Confidence 345566677788999998888776 47888766644 344443220 00467788887654
No 71
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=73.44 E-value=14 Score=32.90 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 197 NVIVDYLVGQAKAG-AQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 197 d~~i~~~~~~~e~G-~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+.+.++++.+++.| ++++++..+.|. .||.+..++++ +.+++.++. . +|++.|+.+..
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~----~pvi~gv~~~~ 81 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIF----RIAKDEAKD---Q----IALIAQVGSVN 81 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHH----HHHHHHhCC---C----CcEEEecCCCC
Confidence 34456677778999 999988887774 49999887764 334444432 2 68888875544
No 72
>PLN02161 beta-amylase
Probab=73.05 E-value=3.6 Score=39.19 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEY---LDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~---iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
...+++..+|+|+| ..|-|=+. -+|+ +|-|-+++++++.+++. | .+ ..+|-||-
T Consensus 121 ~~L~~LK~~GVdGV-mvDVWWGiVE~~~p~---~YdWsgY~~l~~mvr~~--G----LKlq~vmSFHqCGG 181 (531)
T PLN02161 121 VSLKALKLAGVHGI-AVEVWWGIVERFSPL---EFKWSLYEELFRLISEA--G----LKLHVALCFHSNMH 181 (531)
T ss_pred HHHHHHHHcCCCEE-EEEeeeeeeecCCCC---cCCcHHHHHHHHHHHHc--C----CeEEEEEEecccCC
Confidence 34566778999997 55654332 3454 56799999999999987 4 33 55787763
No 73
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.68 E-value=14 Score=33.67 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh-ccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-KQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~-~~~~~~~~~ilH~cG~~~ 266 (281)
+..++.++.+.++|++.|.+.|+.|. +.|+...+ ++..+++.. |+ +++-+|++-+..
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~--------~v~~l~~~l~~~----i~ig~H~HnnlG 201 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGA-LLPEDVRD--------RVRALRAALKPD----TQVGFHGHNNLG 201 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCC-CCHHHHHH--------HHHHHHHhcCCC----CeEEEEeCCCcc
Confidence 45566778888999999888777764 77776444 444444443 34 788999987765
No 74
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=72.22 E-value=14 Score=32.93 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGA 264 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~ 264 (281)
.+.++.+++.|++++++..+.+. .||.+..++++. .+.+.++. . +|++.|+..+
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~----~~~~~~~g---~----~pvi~gv~~~ 84 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVE----IAVSTAKG---K----VPVYTGVGGN 84 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCcc
Confidence 34455667899999988877774 499998776554 23333332 2 7888888653
No 75
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=72.04 E-value=18 Score=33.31 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++++++..++|++.|.+.|..| .++|..+.+++. .+++.. + +++-+|++-+.+
T Consensus 142 ~~l~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~-~----v~l~~H~HNd~G 197 (365)
T TIGR02660 142 DFLVELAEVAAEAGADRFRFADTVG-ILDPFSTYELVR--------ALRQAV-D----LPLEMHAHNDLG 197 (365)
T ss_pred HHHHHHHHHHHHcCcCEEEEcccCC-CCCHHHHHHHHH--------HHHHhc-C----CeEEEEecCCCC
Confidence 4455666666788999998888776 588888776553 333332 3 678889887654
No 76
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=71.99 E-value=21 Score=31.30 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+.++|++.+.+.|..| .++|+...+ ++..+++.. + +++-+|++-+.+
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~--------~~~~~~~~~-~----~~i~~H~Hn~~G 196 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTVG-IATPRQVYE--------LVRTLRGVV-S----CDIEFHGHNDTG 196 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCC-CCCHHHHHH--------HHHHHHHhc-C----CeEEEEECCCCC
Confidence 344666777788999988877766 578876444 444455543 3 678899987765
No 77
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=71.25 E-value=15 Score=32.67 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+...+++. .+++.++. . +|++.|..++.+
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~----~~~~~~~g---~----~pvi~gv~~~~t 81 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIE----NAIDQIAG---R----IPFAPGTGALNH 81 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHH----HHHHHhCC---C----CcEEEECCcchH
Confidence 335566677899999988887764 499998776654 33343432 3 788888887654
No 78
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=70.39 E-value=17 Score=38.66 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++.++.++.+.++|+|.|.+.|..| .+.|... .+++..+++.. + +++-+|++-+.+
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~G-ll~P~~~--------~~Lv~~lk~~~-~----~pi~~H~Hdt~G 744 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAG-LLKPAAA--------KLLIKALREKT-D----LPIHFHTHDTSG 744 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcC-CcCHHHH--------HHHHHHHHHhc-C----CeEEEEECCCCC
Confidence 46677888888999999987776554 6888864 45566666654 4 799999988765
No 79
>PLN02417 dihydrodipicolinate synthase
Probab=69.80 E-value=18 Score=31.87 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|+++|++..+.|. .+|.+..++.+ +.+.+.+.+ . +|++.|+.++.+
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~----~~~~~~~~~---~----~pvi~gv~~~~t 82 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGG---K----IKVIGNTGSNST 82 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHH----HHHHHHhCC---C----CcEEEECCCccH
Confidence 445566778899999988887774 49999887753 233333332 2 788888776543
No 80
>PRK12999 pyruvate carboxylase; Reviewed
Probab=67.76 E-value=21 Score=38.15 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++.+++++.+.++|+|.|.+.|..| .++|... .+++..+++.. + +++-+|++-+.+
T Consensus 690 ~~~~~~~a~~l~~~Ga~~i~ikDt~G-~l~P~~~--------~~lv~~lk~~~-~----ipi~~H~Hnt~G 746 (1146)
T PRK12999 690 LDYYVDLAKELEKAGAHILAIKDMAG-LLKPAAA--------YELVSALKEEV-D----LPIHLHTHDTSG 746 (1146)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccC-CCCHHHH--------HHHHHHHHHHc-C----CeEEEEeCCCCc
Confidence 45667888888999999987777654 6888764 45566666654 4 789999988765
No 81
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.44 E-value=22 Score=34.52 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..+ .+.|..+.+++.-.. +.. + +++-+|++-+.+
T Consensus 158 ~~l~~~~~~~~~~Gad~i~l~DTvG-~~~P~~v~~li~~l~--------~~~-~----v~i~~H~HND~G 213 (524)
T PRK12344 158 EYALATLKAAAEAGADWVVLCDTNG-GTLPHEVAEIVAEVR--------AAP-G----VPLGIHAHNDSG 213 (524)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCCC-CcCHHHHHHHHHHHH--------Hhc-C----CeEEEEECCCCC
Confidence 3445555666799999988877765 588988877664332 221 3 688899987754
No 82
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=67.00 E-value=20 Score=32.02 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCC
Q psy15359 179 HWLYKYPEESKKLLEILTNV---------------IVDYLVGQAKAGAQLLQLFESN 220 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d~---------------~i~~~~~~~e~G~d~i~i~d~~ 220 (281)
..+.++||.+.++++.+.+. ..+.++++.++|+|+|.+....
T Consensus 147 ~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (299)
T cd02940 147 AAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred hhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccc
Confidence 45678999999999888653 3467888889999999776544
No 83
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=66.36 E-value=69 Score=25.93 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecC---CCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFES---NAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~---~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.+.++...+.|+..+.+.-. .....+.+.-.+.+...++++.+.+++. | +.+.++.++...
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~i~lE~~~~~~ 137 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY--G----VRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH--T----SEEEEE-SSSSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh--c----ceEEEecccCcc
Confidence 3344445555669998766633 3344666666677777999999999987 7 889999888764
No 84
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=66.01 E-value=30 Score=31.31 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCCC----CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 185 PEESKKLLEILTNVIVDYLVGQA-KAGAQLLQLFESNAEY----LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 185 Pe~v~~lle~i~d~~i~~~~~~~-e~G~d~i~i~d~~~~~----iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
|+.+.+-++.+.+.-.++++++. ++|+|.|.+...+.+. -+++.|.+ +++.+.+.. + +|.++
T Consensus 63 ~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~--------~Vk~V~eav-d----~PL~I 129 (319)
T PRK04452 63 PEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAK--------TVEEVLQAV-D----VPLII 129 (319)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHH--------HHHHHHHhC-C----CCEEE
Confidence 45677777777666688999887 9999999887433322 35555543 334444333 4 89999
Q ss_pred EecCC
Q psy15359 260 FAKGA 264 (281)
Q Consensus 260 H~cG~ 264 (281)
-+|||
T Consensus 130 d~s~n 134 (319)
T PRK04452 130 GGSGN 134 (319)
T ss_pred ecCCC
Confidence 99995
No 85
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=65.19 E-value=28 Score=33.80 Aligned_cols=57 Identities=28% Similarity=0.271 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.+++..++|++.|.+.|..| ...|..+.+++ +.+++..+. .++-+|++-+.+
T Consensus 154 ~~l~~~~~~a~~aGad~i~i~DTvG-~~~P~~v~~li--------~~l~~~~~~----~~i~vH~HND~G 210 (526)
T TIGR00977 154 EYALATLATAQQAGADWLVLCDTNG-GTLPHEISEIT--------TKVKRSLKQ----PQLGIHAHNDSG 210 (526)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCC-CcCHHHHHHHH--------HHHHHhCCC----CEEEEEECCCCC
Confidence 3444555566699999998887776 57888877653 344443322 347888886654
No 86
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=64.68 E-value=28 Score=32.18 Aligned_cols=56 Identities=13% Similarity=0.304 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++...++|++.|.+.|..| .+.|..+.+++. .+++.. + +++-+|++-+.+
T Consensus 145 ~~l~~~~~~~~~~Ga~~I~l~DT~G-~~~P~~v~~lv~--------~l~~~~-~----~~l~~H~Hnd~G 200 (378)
T PRK11858 145 DFLIEFAKAAEEAGADRVRFCDTVG-ILDPFTMYELVK--------ELVEAV-D----IPIEVHCHNDFG 200 (378)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHH--------HHHHhc-C----CeEEEEecCCcC
Confidence 4455666677789999998888775 588888776554 333332 3 678889887765
No 87
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=64.07 E-value=29 Score=31.94 Aligned_cols=56 Identities=14% Similarity=0.325 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++.+.++|++.|.+.|..| .+.|+...+++. .+++.. + +++-+|++-+..
T Consensus 141 ~~l~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~li~--------~l~~~~-~----~~l~~H~Hnd~G 196 (363)
T TIGR02090 141 DFLIKVFKRAEEAGADRINIADTVG-VLTPQKMEELIK--------KLKENV-K----LPISVHCHNDFG 196 (363)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCC-ccCHHHHHHHHH--------HHhccc-C----ceEEEEecCCCC
Confidence 3445556677789999998888775 588887655544 344432 2 577788887654
No 88
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=63.30 E-value=30 Score=33.40 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.+++++++.++|++.|.+.|..| .+.|..+.+++. .+++..++ .+++++-+|++-+.+
T Consensus 239 efl~~~~~~a~~~Gad~I~l~DTvG-~~tP~~v~~lV~--------~l~~~~~~-~~~i~I~~H~HND~G 298 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIADTVG-INMPHEFGELVT--------YVKANTPG-IDDIVFSVHCHNDLG 298 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHH--------HHHHHhcc-ccCceeEecccCCcC
Confidence 4556777888899999998888766 578887666553 33332211 001568888887654
No 89
>PRK09389 (R)-citramalate synthase; Provisional
Probab=62.72 E-value=33 Score=33.04 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.+++..++|++.|.+.|..+ .+.|..+.+++ ..+++.. + +++-+|++-+..
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG-~~~P~~~~~lv--------~~l~~~~-~----v~l~~H~HND~G 198 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVG-ILTPEKTYELF--------KRLSELV-K----GPVSIHCHNDFG 198 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCC-CcCHHHHHHHH--------HHHHhhc-C----CeEEEEecCCcc
Confidence 4445556666789999998888776 47888877653 3333332 3 678899886654
No 90
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=62.52 E-value=15 Score=32.59 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
.|..|+.++++.|+|+|+|+. .. +-|+++|++|..
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~-~a---l~~~e~i~~f~~ 199 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP-EA---LTDLEEIRAFAE 199 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEcc-cc---CCCHHHHHHHHH
Confidence 688899999999999999732 22 346899888865
No 91
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=61.32 E-value=97 Score=27.67 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+.++..++..++++|+++.+++.- |+..+++++...+.|+|++.
T Consensus 61 ~v~~~~v~~~~grvpviaG~g~~~------------------------------------t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 61 EVLEAVVEAVGGRVPVIAGVGSNS------------------------------------TAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHCCCCcEEEecCCCc------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 344555666677788887766552 22345666666777777776
Q ss_pred EecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 216 LFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 216 i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+.-|.-...+ .+-..-|+++|.+..
T Consensus 105 ~v~PyY~k~~----~~gl~~hf~~ia~a~ 129 (299)
T COG0329 105 VVPPYYNKPS----QEGLYAHFKAIAEAV 129 (299)
T ss_pred EeCCCCcCCC----hHHHHHHHHHHHHhc
Confidence 6555433233 333444556666666
No 92
>KOG2335|consensus
Probab=61.02 E-value=62 Score=29.68 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHH----------------
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILT---------------- 196 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~---------------- 196 (281)
.+++|++++ +-+.|. |-.+++.|=..|. . | |+- ..|..+||+|++++..+.
T Consensus 87 ~ll~Aa~lv-~~y~D~--idlNcGCPq~~a~--~-g----~yG---a~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d 153 (358)
T KOG2335|consen 87 NLLKAARLV-QPYCDG--IDLNCGCPQKVAK--R-G----GYG---AFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVD 153 (358)
T ss_pred HHHHHHHHh-hhhcCc--ccccCCCCHHHHh--c-C----Ccc---ceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCc
Confidence 445565554 545554 3447888944432 2 3 343 567789999999999986
Q ss_pred -HHHHHHHHHHHHhCCCEEEEecCC---CCC-CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccch
Q psy15359 197 -NVIVDYLVGQAKAGAQLLQLFESN---AEY-LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGH 269 (281)
Q Consensus 197 -d~~i~~~~~~~e~G~d~i~i~d~~---~~~-iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~ 269 (281)
+..++|++.+.++|+..+.+..=. .+. ..|-.| +-+.++++..+. +-+-+=|++..+.
T Consensus 154 ~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~---------~~i~~v~~~~~~------ipviaNGnI~~~~ 216 (358)
T KOG2335|consen 154 LEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADW---------EAIKAVRENVPD------IPVIANGNILSLE 216 (358)
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCH---------HHHHHHHHhCcC------CcEEeeCCcCcHH
Confidence 457899999999999998776522 222 333333 334445554222 4466778887433
No 93
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=60.94 E-value=18 Score=31.25 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc--ccchhhh
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP--KQGHNCY 272 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~--~~~~~~~ 272 (281)
-.+..++.++++.++|||++++..+. +++.++++.. . . + .|+++..-.+. ...++|.
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~----~~~~~~~~~~--------~----~-~----~Pl~~~~~~~~~~~~~~~l~ 216 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK----DPEEIRAFAE--------A----P-D----VPLNVNMTPGGNLLTVAELA 216 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC----CHHHHHHHHh--------c----C-C----CCEEEEecCCCCCCCHHHHH
Confidence 35668889999999999998765433 5555555433 2 1 3 56666544433 3455555
Q ss_pred cCCCCC
Q psy15359 273 NYSNPM 278 (281)
Q Consensus 273 ~~~~~~ 278 (281)
+.|..+
T Consensus 217 ~lG~~~ 222 (243)
T cd00377 217 ELGVRR 222 (243)
T ss_pred HCCCeE
Confidence 555443
No 94
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=60.24 E-value=33 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH-hCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q psy15359 198 VIVDYLVGQAK-AGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGA 264 (281)
Q Consensus 198 ~~i~~~~~~~e-~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~ 264 (281)
.+.++++.+++ .|++++++..+.+. .||.+..++++ +.+++.+.. . ++++.++..+
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~----~~~~~~~~~---~----~~viagvg~~ 83 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVL----EIVAEEAKG---K----VKLIAQVGSV 83 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHH----HHHHHHhCC---C----CCEEecCCCC
Confidence 34455666778 99999988877764 39999877763 344444432 2 6888888543
No 95
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=60.20 E-value=35 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~ 241 (281)
+..++.++.++++||+.|-+.. +. ...+|++.=.+-+.|..+.+-
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~ 71 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALR 71 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566788899999999998864 22 235888854445555555443
No 96
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=59.58 E-value=36 Score=28.71 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=39.1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 183 KYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 183 ~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
-||++. +...+.++++.++|+|+|.+..+.+ ++++. ..++++.+|+.+ + +|++++ -
T Consensus 5 iDP~k~--------e~~~~ia~~v~~~gtDaI~VGGS~g--vt~~~--------~~~~v~~ik~~~-~----lPvilf-p 60 (205)
T TIGR01769 5 IDPEKS--------DEIEKIAKNAKDAGTDAIMVGGSLG--IVESN--------LDQTVKKIKKIT-N----LPVILF-P 60 (205)
T ss_pred cCCCcH--------HHHHHHHHHHHhcCCCEEEEcCcCC--CCHHH--------HHHHHHHHHhhc-C----CCEEEE-C
Confidence 478777 3344577788899999997765533 44443 345566777753 4 899986 4
Q ss_pred CCcc
Q psy15359 263 GAPK 266 (281)
Q Consensus 263 G~~~ 266 (281)
|+..
T Consensus 61 ~~~~ 64 (205)
T TIGR01769 61 GNVN 64 (205)
T ss_pred CCcc
Confidence 4443
No 97
>PRK13753 dihydropteroate synthase; Provisional
Probab=59.39 E-value=39 Score=29.98 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||+|.+...+ +..+|++.=.+-+.|..+.+.+
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~ 74 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD 74 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 556777888899999999888633 3469999877788888887764
No 98
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=58.93 E-value=35 Score=30.20 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHh-CCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q psy15359 198 VIVDYLVGQAKA-GAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGA 264 (281)
Q Consensus 198 ~~i~~~~~~~e~-G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~ 264 (281)
...++++.+++. |++++++..+.+. .+|.+..++++ +...+.+.. . +++|.++.+.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~----~~~~~~~~~---~----~~viagv~~~ 80 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIA----EIVAEAAKG---K----VTLIAHVGSL 80 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---C----CeEEeccCCC
Confidence 344566677888 9999988887764 49999887764 333444432 2 6788877543
No 99
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=56.97 E-value=33 Score=33.03 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.+++..++|++.|.+.|..+ ...|..+.+++.-.. +.+... +. +++-+|++-+..
T Consensus 146 ~~l~~~~~~~~~~Ga~~i~l~DTvG-~~~P~~~~~~i~~l~----~~~~~~-~~----v~l~~H~HND~G 205 (494)
T TIGR00973 146 PFLARIVEAAINAGATTINIPDTVG-YALPAEYGNLIKGLR----ENVPNI-DK----AILSVHCHNDLG 205 (494)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCC-CCCHHHHHHHHHHHH----Hhhccc-cC----ceEEEEeCCCCC
Confidence 4566777788889999988888776 488888777665332 222211 12 568888886654
No 100
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=56.71 E-value=26 Score=26.25 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHh-HHHHHHHHHHHHHhh
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFA-LPYINTINEKVKAQL 248 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~-~Py~k~l~~~i~~~~ 248 (281)
.-+.+.++-+.|..++++.+-.| +||+.|..|. .-=-...++.+++.+
T Consensus 16 lGKaINaLte~GITGFyl~eYkG--mSP~~wkgf~l~EDpe~ai~~I~d~s 64 (110)
T PF10126_consen 16 LGKAINALTEGGITGFYLHEYKG--MSPQDWKGFLLDEDPEMAIKAINDLS 64 (110)
T ss_pred HHHHHHHHHhcCccEEEeEeecC--CChHHhcCcccccCHHHHHHHHHHhc
Confidence 33445566689999976665444 9999999994 444456778888763
No 101
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=56.25 E-value=85 Score=27.79 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHH--HHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMS--YMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~--~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
+.++++++. |-++||+.++...-+... .+..-.|.+=-+.+...|..-.+.-.++-+.-.+.+.+.++.+++.|+++
T Consensus 178 ~f~~~~~~~-gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~g 256 (281)
T TIGR00677 178 KFVNDCRAI-GIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKG 256 (281)
T ss_pred HHHHHHHHc-CCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 334444433 447899877654433221 11110011101233333332111123344556777788888888889999
Q ss_pred EEEec
Q psy15359 214 LQLFE 218 (281)
Q Consensus 214 i~i~d 218 (281)
|.++.
T Consensus 257 iH~~t 261 (281)
T TIGR00677 257 LHFYT 261 (281)
T ss_pred eEEec
Confidence 98875
No 102
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=55.57 E-value=49 Score=30.72 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCCC----CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 185 PEESKKLLEILTNVIVDYLVGQA-KAGAQLLQLFESNAEY----LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 185 Pe~v~~lle~i~d~~i~~~~~~~-e~G~d~i~i~d~~~~~----iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
|+.+.+-++.+.+.-.++++..+ +.|+|.|.+-..+++. =||+.|.+. ++.+-+.. + +|+++
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~--------vk~V~~av-~----vPLIL 193 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKV--------LEDVLQAV-D----VPIVI 193 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHH--------HHHHHHhC-C----CCEEE
Confidence 46677777777766678888886 7899999887654432 577776543 33333322 4 89999
Q ss_pred EecCCcc
Q psy15359 260 FAKGAPK 266 (281)
Q Consensus 260 H~cG~~~ 266 (281)
-+||+..
T Consensus 194 ~gsg~~~ 200 (389)
T TIGR00381 194 GGSGNPE 200 (389)
T ss_pred eCCCCCc
Confidence 9998754
No 103
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=54.43 E-value=54 Score=28.63 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-C---CCCCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-S---NAEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~---~~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||+|-+.. + ....+|++.=.+-+.|..+.+-+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~ 73 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRG 73 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5567788899999999998874 2 23468998877777778777654
No 104
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=54.33 E-value=1.4e+02 Score=27.84 Aligned_cols=42 Identities=7% Similarity=-0.072 Sum_probs=31.7
Q ss_pred HHHhhCHHHHHHHHHHHHH---------------HHHHHHHHHHHhCCCEEEEecCC
Q psy15359 179 HWLYKYPEESKKLLEILTN---------------VIVDYLVGQAKAGAQLLQLFESN 220 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d---------------~~i~~~~~~~e~G~d~i~i~d~~ 220 (281)
..+.++||.+.++++.+.. .+.+.++++.++|+|+|......
T Consensus 161 ~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 161 AAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred hhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 3456789999999888865 34456777889999999876643
No 105
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=54.02 E-value=63 Score=29.17 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHH--------------
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNV-------------- 198 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~-------------- 198 (281)
...++++.+.+ .+-+ .|=-+++.|-.....- |.| ..+.++|+.+.++++.+.+.
T Consensus 78 ~~~~aa~~~~~-~g~d-~IdlN~gCP~~~v~~~--g~G--------s~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~ 145 (321)
T PRK10415 78 EMADAARINVE-SGAQ-IIDINMGCPAKKVNRK--LAG--------SALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA 145 (321)
T ss_pred HHHHHHHHHHH-CCCC-EEEEeCCCCHHHHcCC--Ccc--------cHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc
Confidence 34556665543 3322 2334677786533211 111 45678999999999988652
Q ss_pred -----HHHHHHHHHHhCCCEEEEec
Q psy15359 199 -----IVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 199 -----~i~~~~~~~e~G~d~i~i~d 218 (281)
.+++++.+.++|++.|.+..
T Consensus 146 ~~~~~~~~~a~~le~~G~d~i~vh~ 170 (321)
T PRK10415 146 PEHRNCVEIAQLAEDCGIQALTIHG 170 (321)
T ss_pred CCcchHHHHHHHHHHhCCCEEEEec
Confidence 45677778899999987654
No 106
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=53.83 E-value=1.1e+02 Score=27.42 Aligned_cols=73 Identities=4% Similarity=-0.008 Sum_probs=40.5
Q ss_pred CCCccEEEecCcHHHHHH--HHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q psy15359 146 EGKVPLIGFSGAPWTLMS--YMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 146 ~~~~~i~~~~~gPf~~a~--~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d 218 (281)
|-++||+.++.++.+.-. .+..-.|..=-+.+..-|.+-.+.-.+..+.-.+...+.++.+++.|+++|.++.
T Consensus 202 Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~yt 276 (296)
T PRK09432 202 GIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFYT 276 (296)
T ss_pred CCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 557899988776654432 1211001100123333333322222334455667778888888889999998875
No 107
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=53.10 E-value=72 Score=29.36 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLD----------LFKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 189 ~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
.+=++.+.+...+-++...++|.|+|-+....+ .++||. .++.- .-+..+|++.+++..|.
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR-~Rf~~Eiv~aVr~~vg~---- 225 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENR-ARLVLEVVDAGIAEWGA---- 225 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHH-HHHHHHHHHHHHHHcCC----
Confidence 344566667777788888999999998865433 246663 22333 34778999999987532
Q ss_pred CcEEEEecC
Q psy15359 255 VPMTIFAKG 263 (281)
Q Consensus 255 ~~~ilH~cG 263 (281)
-.+.+.+++
T Consensus 226 ~~igvRis~ 234 (362)
T PRK10605 226 DRIGIRISP 234 (362)
T ss_pred CeEEEEECC
Confidence 235665554
No 108
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=52.79 E-value=53 Score=29.17 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~ 241 (281)
+..++.++.+++.|||+|.+...+ +..+|++.-.+-+.|..+.+-
T Consensus 38 ~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~ 86 (282)
T PRK11613 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIA 86 (282)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 445677888899999999888532 246999887777888887765
No 109
>PLN02321 2-isopropylmalate synthase
Probab=52.59 E-value=63 Score=32.20 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++++++..++|++.|.+.|..| ...|..+.+++ +.+++..++ -..+++-+|++-+.+
T Consensus 240 d~l~~~~~~a~~aGa~~I~L~DTvG-~~~P~~v~~li--------~~l~~~~~~-~~~v~i~vH~HND~G 299 (632)
T PLN02321 240 EFLYRILGEVIKAGATTLNIPDTVG-YTLPSEFGQLI--------ADIKANTPG-IENVIISTHCQNDLG 299 (632)
T ss_pred HHHHHHHHHHHHcCCCEEEeccccc-CCCHHHHHHHH--------HHHHHhcCC-CCCceEEEEeCCCCC
Confidence 5666788888999999998888776 47787765544 334333221 001457888876544
No 110
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=52.49 E-value=57 Score=28.34 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
.+..++.++.+++.|||+|.+...+ +..+|++.=.+-+.|..+.+.+
T Consensus 23 ~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~ 73 (258)
T cd00423 23 LDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAG 73 (258)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 3566788899999999999887422 3468888766667777777653
No 111
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=51.09 E-value=52 Score=29.15 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCC-EEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh--ccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQ-LLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL--KQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d-~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~--~~~~~~~~~ilH~cG~~~ 266 (281)
++..++++...++|++ .|.+.|..| ..+|..|-.+ -.-..++++.+++.. |+ .++-+|++-+.+
T Consensus 149 ~~~~~~~~~~~~~G~~~~i~l~DTvG-~a~P~~~~~~-p~~v~~l~~~l~~~~~~p~----~~l~~H~Hn~~G 215 (279)
T cd07947 149 PFVNKLMKLSKESGIPVKIRLCDTLG-YGVPYPGASL-PRSVPKIIYGLRKDCGVPS----ENLEWHGHNDFY 215 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccccc-hHHHHHHHHHHHHhcCCCC----ceEEEEecCCCC
Confidence 3444555555679999 688888766 2344222111 011244555555442 23 458899887765
No 112
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=50.66 E-value=59 Score=28.61 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
++..++.++...+.|+|++.+.-|.-...|++...+ |++.|.+.. + .|++++..
T Consensus 82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~----y~~~ia~~~-----~----~pi~iYn~ 135 (289)
T PF00701_consen 82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELID----YFRAIADAT-----D----LPIIIYNN 135 (289)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHH----HHHHHHHHS-----S----SEEEEEEB
T ss_pred HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHH----HHHHHHhhc-----C----CCEEEEEC
Confidence 344567777788999999877777655567665333 555555332 3 67777665
No 113
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=50.52 E-value=44 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=28.0
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEec
Q psy15359 181 LYKYPEESKKLLEILTNV---------------IVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 181 l~~~Pe~v~~lle~i~d~---------------~i~~~~~~~e~G~d~i~i~d 218 (281)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+..
T Consensus 135 ~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred ccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 446777777777777655 45667788899999987654
No 114
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=50.40 E-value=67 Score=29.06 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=55.6
Q ss_pred ecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHh
Q psy15359 154 FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFA 233 (281)
Q Consensus 154 ~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~ 233 (281)
.-.|||.--+.|+. . --+.+-.|..+.+.+.+|...+...+.+.+.|+|++ =+|..+.-=.+++|..
T Consensus 158 ~PDGpfeNp~dLm~------~----~Ki~eA~e~~E~aa~h~t~Dmv~v~~km~~sgaDGv-NFDttgaaGd~Df~at-- 224 (466)
T PF09505_consen 158 TPDGPFENPGDLMK------M----FKIKEAQESMEHAAEHLTRDMVWVMQKMYESGADGV-NFDTTGAAGDGDFYAT-- 224 (466)
T ss_pred CCCCCCCCHHHHHH------H----hhHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCcc-cccccccCCChhHHHH--
Confidence 34588887777761 1 122334467788888888889999999999999997 5576654456677654
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy15359 234 LPYINTINEKVKAQLKQ 250 (281)
Q Consensus 234 ~Py~k~l~~~i~~~~~~ 250 (281)
.+.++++++..|+
T Consensus 225 ----L~AvE~Lr~~fP~ 237 (466)
T PF09505_consen 225 ----LKAVEALRKKFPN 237 (466)
T ss_pred ----HHHHHHHHHhCcc
Confidence 3567777776444
No 115
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=50.36 E-value=1.6e+02 Score=25.54 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
.+.+.+.++...+.|++.+.+.-.....-+.+...+.+...++++.+.+++. | +.+.++.++..
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----i~l~lEn~~~~ 147 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETK--G----VVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCC--C----CEEEEeCCCCC
Confidence 3455556666678899987553322222456666677778889999998876 6 88899887665
No 116
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.73 E-value=55 Score=30.66 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCC
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSN 276 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~ 276 (281)
+...+.+++++++|+|.|.+ |...+. |. ...+++..+++..|+ .+++...|.+.....++.+.+.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~i-D~a~g~-~~---------~~~~~v~~ik~~~p~----~~vi~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVI-DSAHGH-ST---------RIIELVKKIKTKYPN----LDLIAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEE-ECCCCC-Ch---------hHHHHHHHHHhhCCC----CcEEEEecCCHHHHHHHHHcCC
Confidence 55778899999999998744 644421 21 334556667766555 5666666666655555555544
Q ss_pred C
Q psy15359 277 P 277 (281)
Q Consensus 277 ~ 277 (281)
+
T Consensus 217 D 217 (404)
T PRK06843 217 D 217 (404)
T ss_pred C
Confidence 4
No 117
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=48.24 E-value=98 Score=27.13 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCCccEEEecCcHHHHHHH--HHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q psy15359 146 EGKVPLIGFSGAPWTLMSY--MIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 146 ~~~~~i~~~~~gPf~~a~~--l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d 218 (281)
|-++||+.++..+.+.-+. +..-.|..=.+.+...+.+-.+.-.++-+.-.+.+.+.++.+++.|+++|.++.
T Consensus 183 gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t 257 (272)
T TIGR00676 183 GIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYT 257 (272)
T ss_pred CCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 4468988776655443321 111101110133333333211222333445677777888888889999987765
No 118
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=48.06 E-value=57 Score=29.54 Aligned_cols=67 Identities=7% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCC
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNP 277 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~ 277 (281)
...+.++.++++|++.|.+.-..+. + +...++++.+++..|+ ++++...+.+......+.+.+.+
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~---~--------~~~~~~i~~ik~~~p~----v~Vi~G~v~t~~~A~~l~~aGaD 158 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGH---S--------VYVIEMIKFIKKKYPN----VDVIAGNVVTAEAARDLIDAGAD 158 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCC---c--------HHHHHHHHHHHHHCCC----ceEEECCCCCHHHHHHHHhcCCC
Confidence 3467788889999998754322221 1 2335566666665433 56666555555555566666655
Q ss_pred CC
Q psy15359 278 ML 279 (281)
Q Consensus 278 ~~ 279 (281)
-+
T Consensus 159 ~I 160 (325)
T cd00381 159 GV 160 (325)
T ss_pred EE
Confidence 43
No 119
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=47.30 E-value=52 Score=29.42 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHh
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFA 233 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~ 233 (281)
+..++.++++.++|+|+|++.. .-|++..+++.
T Consensus 165 deaI~Ra~aY~eAGAD~ifi~~----~~~~~ei~~~~ 197 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFLEA----MLDVEEMKRVR 197 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEecC----CCCHHHHHHHH
Confidence 5677889999999999986632 35666644443
No 120
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=46.59 E-value=90 Score=27.89 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCC----------CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNA----------EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGA 264 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~----------~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~ 264 (281)
.+.++.+++.|++.|-++-+.+ ..++++. ++++++.+++. | .++..|+++.
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~--------l~~~~~~A~~~--g----~~v~~H~~~~ 183 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEE--------LRAIVDEAHKA--G----LYVAAHAYGA 183 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHH--------HHHHHHHHHHc--C----CEEEEEeCCH
Confidence 3455567788999886553211 1355554 45677888887 6 8999999875
No 121
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=46.11 E-value=1.1e+02 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 202 YLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 202 ~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
.++.++++|||+|-+...+ +..+|++.=.+.+.|.++.+.+
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~ 68 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIRE 68 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhc
Confidence 3889999999999887533 3458888767778888877775
No 122
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=45.86 E-value=49 Score=29.45 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
++..++.++++.++|||+|++. +..-|++..++++.
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~~~ 203 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIH---SRKKDPDEILEFAR 203 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHHHH
Confidence 5677888999999999998764 22356666555443
No 123
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=45.43 E-value=1.5e+02 Score=25.47 Aligned_cols=85 Identities=8% Similarity=-0.014 Sum_probs=51.1
Q ss_pred HHHhhCHHHHHHHHHHHHH----------------HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHH
Q psy15359 179 HWLYKYPEESKKLLEILTN----------------VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d----------------~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
..|.++|+.+.++++.+.+ ..++.++++.++|++++.+..-..+. ++ -.-+.+.
T Consensus 114 ~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-~~---------a~~~~I~ 183 (231)
T TIGR00736 114 QELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-PY---------ADMDLLK 183 (231)
T ss_pred hhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-ch---------hhHHHHH
Confidence 4567799999999998863 45678888899999998773211110 00 2234444
Q ss_pred HHHHhhccCCCCCcEEEEecCCcccch---hhhcCCCCCC
Q psy15359 243 KVKAQLKQMNNDVPMTIFAKGAPKQGH---NCYNYSNPML 279 (281)
Q Consensus 243 ~i~~~~~~~~~~~~~ilH~cG~~~~~~---~~~~~~~~~~ 279 (281)
.+++..++ +| +-..|.+.-.+ +++.|+.+.+
T Consensus 184 ~i~~~~~~----ip--IIgNGgI~s~eda~e~l~~GAd~V 217 (231)
T TIGR00736 184 ILSEEFND----KI--IIGNNSIDDIESAKEMLKAGADFV 217 (231)
T ss_pred HHHHhcCC----Cc--EEEECCcCCHHHHHHHHHhCCCeE
Confidence 44443112 34 55577776444 4556777654
No 124
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=44.76 E-value=82 Score=27.59 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHH
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEK 243 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~ 243 (281)
.++.++...++|+|+|.+.-|.-...++ +=+..|+++|.+.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~----~~l~~~~~~ia~~ 124 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQ----EGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCH----HHHHHHHHHHHhc
Confidence 3667777778888887666554322343 2244566777765
No 125
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.32 E-value=2.1e+02 Score=24.74 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESN-AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
.+.+.+.++...+.|+..|.+.... ..-.+.+...+.+...++++.+.++++ | +.+.+|.+++.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~--G----V~i~iE~~~~~ 162 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRA--S----VTLAFEIMDTP 162 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHh--C----CEEEEeecCCc
Confidence 3344455566668899987654211 111333555566667999999999887 7 89999987644
No 126
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=43.61 E-value=1.1e+02 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEec
Q psy15359 193 EILTNVIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 193 e~i~d~~i~~~~~~~e~G~d~i~i~d 218 (281)
+.-.+..++.++.+++.|++++.++.
T Consensus 247 ~~gi~~a~e~~~~l~~~gv~GvH~~t 272 (287)
T PF02219_consen 247 EIGIEIAVELIRELLAEGVPGVHLYT 272 (287)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHhHHHHHHHHHHHHHcCCCeEEEEc
Confidence 44556677778888889999998774
No 127
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.49 E-value=1.1e+02 Score=27.68 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHH---------------
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNV--------------- 198 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~--------------- 198 (281)
..++.+.+.+ .|-+ .|=-+++.|...... +|.| ..|.++|+.+.++++.+.+.
T Consensus 69 ~~~aA~~~~~-~g~d-~IDlN~GCP~~~v~~--~g~G--------s~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~ 136 (318)
T TIGR00742 69 LAKCAKIAEK-RGYD-EINLNVGCPSDRVQN--GNFG--------ACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP 136 (318)
T ss_pred HHHHHHHHHh-CCCC-EEEEECCCCHHHhCC--CCee--------hHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3455555543 3311 233466778765421 1111 45667888888888877653
Q ss_pred ------HHHHHHHHHHhCCCEEEEecCC--CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchh
Q psy15359 199 ------IVDYLVGQAKAGAQLLQLFESN--AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHN 270 (281)
Q Consensus 199 ------~i~~~~~~~e~G~d~i~i~d~~--~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~ 270 (281)
.+++++.+.++|++.|.+..-. ...+|++.=+ ...|..-+.+..+++..+. +|+| ..|.+.-.++
T Consensus 137 ~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~-~~~~~~~~~i~~vk~~~~~----ipVi--~NGdI~s~~d 209 (318)
T TIGR00742 137 LDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENR-EIPPLRYERVYQLKKDFPH----LTIE--INGGIKNSEQ 209 (318)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccc-cCCchhHHHHHHHHHhCCC----CcEE--EECCcCCHHH
Confidence 3466777789999998776532 1224443210 1122222233345543223 6655 5788765554
Q ss_pred h
Q psy15359 271 C 271 (281)
Q Consensus 271 ~ 271 (281)
.
T Consensus 210 a 210 (318)
T TIGR00742 210 I 210 (318)
T ss_pred H
Confidence 3
No 128
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=43.02 E-value=52 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
.|..++.++++.++|||+|++.. .-+++..++|..
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~----~~~~~~i~~~~~ 199 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEA----MTELEMYRRFAD 199 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC----CCCHHHHHHHHH
Confidence 46678889999999999986643 235666665544
No 129
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.96 E-value=1.7e+02 Score=28.86 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHH-----HHHHhCCCCCchHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLM-----SYMIEGGGSKTMSKSKHWL---YKYPEESKKLLEILTNVIVDYLVGQA 207 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a-----~~l~~G~~~~g~e~~~~~l---~~~Pe~v~~lle~i~d~~i~~~~~~~ 207 (281)
+-++++++. |-++||+.++..+-+.. ..++ | .+=-+.++..| ..++|. +.+.-.+.+.+.++.++
T Consensus 186 ~f~~~~r~~-Gi~vPIipGImPI~S~k~l~r~~~l~-G--i~IP~~i~~rLe~~kddde~---v~~~Gieia~e~~~~L~ 258 (565)
T PLN02540 186 KFVNDCRQI-GITCPIVPGIMPINNYKGFLRMTGFC-K--TKIPAEITAALEPIKDNDEA---VKAYGIHLGTEMCKKIL 258 (565)
T ss_pred HHHHHHHhc-CCCCCEEeeecccCCHHHHHHHHhcc-C--CcCCHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHH
Confidence 344444443 54789988766444332 2233 1 10012333333 234443 34457777888888999
Q ss_pred HhCCCEEEEec
Q psy15359 208 KAGAQLLQLFE 218 (281)
Q Consensus 208 e~G~d~i~i~d 218 (281)
+.|++++.++.
T Consensus 259 ~~Gv~GiHfYT 269 (565)
T PLN02540 259 AHGIKGLHLYT 269 (565)
T ss_pred HcCCCEEEECc
Confidence 99999998874
No 130
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=42.52 E-value=61 Score=29.52 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+..+.|++.+.++|...|+. +++.|+.+++..+-++++|++.+++. | ..+|.-+-.+.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFt-----sl~~~~~~~~~~~~~~~ell~~Ankl--g----~~vivDvnPsi 73 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFT-----SLLIPEEDAELYFHRFKELLKEANKL--G----LRVIVDVNPSI 73 (360)
T ss_pred hhHHHHHHHHHHcCccceee-----ecccCCchHHHHHHHHHHHHHHHHhc--C----cEEEEEcCHHH
Confidence 45678889999999998743 35788888888999999999999998 7 88998887763
No 131
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=42.51 E-value=1.5e+02 Score=26.81 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
.++.++.. ++.| ...-..+-||+|.+..-- . - +.....++++.+++...+..+.+.++|+.-
T Consensus 136 ~~~~~~eA-~~~G--~~~kpvL~GP~TfL~Lsk-~-----~---------~~~~~~~ll~~l~~vY~~ll~~L~~~G~~~ 197 (310)
T PF08267_consen 136 LLDEFREA-KALG--INTKPVLPGPVTFLLLSK-N-----E---------DGSDPLDLLDDLLPVYAELLKELAAAGVEW 197 (310)
T ss_dssp HHHHHHHH-HHTT--GGEEEEEE-HHHHHHTSE-E-----T---------TCCHHHHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHH-Hhhh--cCCeeEEEcHHHHHHHcC-c-----C---------CCCCHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 34444443 3333 455556689999865321 0 0 001345688999999999999999999999
Q ss_pred EEEecCCCC-CCCHHHHHHHhHHHHHHHH
Q psy15359 214 LQLFESNAE-YLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 214 i~i~d~~~~-~iSp~~f~ef~~Py~k~l~ 241 (281)
|++-+|.-. -++++ +.+-+..-++++.
T Consensus 198 VQldEP~Lv~d~~~~-~~~~~~~aY~~L~ 225 (310)
T PF08267_consen 198 VQLDEPALVLDLPEE-WLEAFEEAYEELA 225 (310)
T ss_dssp EEEE-GGGGSSGCHH-HHHHHHHHHHHHC
T ss_pred EEecCCeeecCCCHH-HHHHHHHHHHHHh
Confidence 999887632 24444 4444444444444
No 132
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=42.49 E-value=1.7e+02 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHhCCCEEEEec
Q psy15359 184 YPEESKKLLEILTN------------VIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 184 ~Pe~v~~lle~i~d------------~~i~~~~~~~e~G~d~i~i~d 218 (281)
+|+++.+++..+.+ ...++++.++++|+|.|++..
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihg 163 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQG 163 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEec
Confidence 68888877777775 467889999999999987764
No 133
>PLN02411 12-oxophytodienoate reductase
Probab=41.87 E-value=1.2e+02 Score=28.29 Aligned_cols=70 Identities=6% Similarity=0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHH------H----HHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLD------L----FKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 189 ~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~------~----f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
.+=++.+.+...+-++...++|.|+|-+....+ .||||- . ++.- .-+..+|++++++..|.
T Consensus 157 ~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR-~RF~lEIi~aVr~~vg~---- 231 (391)
T PLN02411 157 TSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENR-CRFLMQVVQAVVSAIGA---- 231 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHH-hHHHHHHHHHHHHHcCC----
Confidence 344566666777788888899999998765333 246661 1 2333 34788999999987532
Q ss_pred CcEEEEecC
Q psy15359 255 VPMTIFAKG 263 (281)
Q Consensus 255 ~~~ilH~cG 263 (281)
-.+.+-+.+
T Consensus 232 d~vgvRiS~ 240 (391)
T PLN02411 232 DRVGVRVSP 240 (391)
T ss_pred CeEEEEEcc
Confidence 236666654
No 134
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=41.56 E-value=62 Score=26.35 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCCC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNPM 278 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~~ 278 (281)
+.++..+++|+|+| ..|.+ ||+. ++++++.+++. + ..+.+-.+|.++ .+..+...+.|.
T Consensus 91 ee~~ea~~~g~d~I-~lD~~----~~~~--------~~~~v~~l~~~--~----~~v~ie~SGGI~~~ni~~ya~~gvD~ 151 (169)
T PF01729_consen 91 EEAEEALEAGADII-MLDNM----SPED--------LKEAVEELREL--N----PRVKIEASGGITLENIAEYAKTGVDV 151 (169)
T ss_dssp HHHHHHHHTT-SEE-EEES-----CHHH--------HHHHHHHHHHH--T----TTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred HHHHHHHHhCCCEE-EecCc----CHHH--------HHHHHHHHhhc--C----CcEEEEEECCCCHHHHHHHHhcCCCE
Confidence 34555677999987 44543 6654 56677777766 3 357888899887 477888888877
Q ss_pred CC
Q psy15359 279 LS 280 (281)
Q Consensus 279 ~~ 280 (281)
+|
T Consensus 152 is 153 (169)
T PF01729_consen 152 IS 153 (169)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 135
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=40.85 E-value=2.5e+02 Score=24.65 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=11.7
Q ss_pred HHHHHHHcCCCccEEEecCc
Q psy15359 138 ITLTRHKLEGKVPLIGFSGA 157 (281)
Q Consensus 138 ~~~l~~~~~~~~~i~~~~~g 157 (281)
++...+..++++||+..+.+
T Consensus 57 ~~~~~~~~~~~~~vi~gv~~ 76 (285)
T TIGR00674 57 IEFVVDLVNGRVPVIAGTGS 76 (285)
T ss_pred HHHHHHHhCCCCeEEEeCCC
Confidence 33344445567888877643
No 136
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=40.39 E-value=8.5 Score=35.78 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCC-CC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESN-AE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~-~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
+....+++..+|+++| ..|-| +- .-+| .+|-|-+++++++.+++. | .+ ..+|-||.
T Consensus 18 ~~~~L~~LK~~GV~GV-mvdvWWGiVE~~~p---~~ydWs~Y~~l~~~vr~~--G----Lk~~~vmsfH~cGg 80 (402)
T PF01373_consen 18 LEAQLRALKSAGVDGV-MVDVWWGIVEGEGP---QQYDWSGYRELFEMVRDA--G----LKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHHHTTEEEE-EEEEEHHHHTGSST---TB---HHHHHHHHHHHHT--T-----EEEEEEE-S-BSS
T ss_pred HHHHHHHHHHcCCcEE-EEEeEeeeeccCCC---CccCcHHHHHHHHHHHHc--C----CeEEEEEeeecCCC
Confidence 3345667788999997 44533 21 1334 567799999999999987 4 43 45699974
No 137
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=40.15 E-value=66 Score=27.75 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhh
Q psy15359 193 EILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCY 272 (281)
Q Consensus 193 e~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~ 272 (281)
..-.+..++.++++.++|+|.|++... -+.+..+++ .+.+ + +|+.+..-+.....++|.
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~----~~~~~i~~~--------~~~~-----~----~Pl~v~~~~~~~~~~eL~ 209 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGL----QSEEEIERI--------VKAV-----D----GPLNVNPGPGTLSAEELA 209 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTS----SSHHHHHHH--------HHHH-----S----SEEEEETTSSSS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC----CCHHHHHHH--------HHhc-----C----CCEEEEcCCCCCCHHHHH
Confidence 344566778889999999999865432 344444333 3333 2 465555434344566666
Q ss_pred cCCCCCC
Q psy15359 273 NYSNPML 279 (281)
Q Consensus 273 ~~~~~~~ 279 (281)
+.|..++
T Consensus 210 ~lGv~~v 216 (238)
T PF13714_consen 210 ELGVKRV 216 (238)
T ss_dssp HTTESEE
T ss_pred HCCCcEE
Confidence 6555443
No 138
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=40.09 E-value=70 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCC-CccEEEecCcH
Q psy15359 136 EAITLTRHKLEG-KVPLIGFSGAP 158 (281)
Q Consensus 136 ~~~~~l~~~~~~-~~~i~~~~~gP 158 (281)
+.++.+++..++ ++|++..+.++
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~ 58 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFP 58 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCC
Confidence 344445555555 67777665544
No 139
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=40.06 E-value=1.5e+02 Score=26.56 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHH--------------
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNV-------------- 198 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~-------------- 198 (281)
...++++++++ .|-+ .|=.+++.|...... .|.| ..+.++|+.+.++++.+.+.
T Consensus 76 ~~~~aa~~~~~-~G~d-~IelN~gcP~~~~~~--~~~G--------s~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~ 143 (319)
T TIGR00737 76 TMAEAAKINEE-LGAD-IIDINMGCPVPKITK--KGAG--------SALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD 143 (319)
T ss_pred HHHHHHHHHHh-CCCC-EEEEECCCCHHHhcC--CCcc--------chHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC
Confidence 44556666544 3322 233466778432211 1111 34556888888888877542
Q ss_pred -----HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccc
Q psy15359 199 -----IVDYLVGQAKAGAQLLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQG 268 (281)
Q Consensus 199 -----~i~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~ 268 (281)
.+++++.+.++|+|.|.+..-.. ...+. |...+.+..+++.. + +| +..+|.+...
T Consensus 144 ~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~--------~~~~~~i~~i~~~~-~----ip--vi~nGgI~~~ 204 (319)
T TIGR00737 144 DAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSG--------EANWDIIARVKQAV-R----IP--VIGNGDIFSP 204 (319)
T ss_pred CCcchHHHHHHHHHHhCCCEEEEEcccccccCCC--------chhHHHHHHHHHcC-C----Cc--EEEeCCCCCH
Confidence 45777778889999987753211 11221 23344555555542 2 44 5568877643
No 140
>PRK00915 2-isopropylmalate synthase; Validated
Probab=40.04 E-value=68 Score=31.07 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++++++..++|++.|.+.|..|. +.|..+.+++.-.. +.+... .+ +++-+|++-+.+
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~~~i~~l~----~~~~~~-~~----v~l~~H~HND~G 208 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGY-TTPEEFGELIKTLR----ERVPNI-DK----AIISVHCHNDLG 208 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCC-CCHHHHHHHHHHHH----HhCCCc-cc----ceEEEEecCCCC
Confidence 55667777778999999988887764 77888766554322 222211 12 578888887654
No 141
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.94 E-value=91 Score=27.42 Aligned_cols=37 Identities=8% Similarity=-0.050 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhH
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFAL 234 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~ 234 (281)
.+.+.++.+++.|++++++..+.|. .||.+..++.+.
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~ 59 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLK 59 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHH
Confidence 3445666778899999988887774 499998766544
No 142
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=39.00 E-value=2.3e+02 Score=24.64 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHH--HHHHH---HhCCCCCchHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWT--LMSYM---IEGGGSKTMSKSKHWLY---KYPEESKKLLEILTNVIVDYLVGQA 207 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~--~a~~l---~~G~~~~g~e~~~~~l~---~~Pe~v~~lle~i~d~~i~~~~~~~ 207 (281)
+.++.+++. |-++||+.++..+.+ .+..+ + |- .=-+.++..+. .+++.. .+.-.+...+.++.+.
T Consensus 177 ~~~~~~~~~-gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv--~vP~~~~~~l~~~~~~~~~~---~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 177 RFVDRCRAA-GITVPIIPGIMPLTSYKQAKRFAKLC-GV--EIPDWLLERLEKLKDDAEAV---RAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHHHHc-CCCCCEEeeccccCCHHHHHHHHHhh-CC--CCCHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH
Confidence 334444443 446899887765543 22222 3 21 01133444443 344433 3456666777777777
Q ss_pred HhCCCEEEEecCC
Q psy15359 208 KAGAQLLQLFESN 220 (281)
Q Consensus 208 e~G~d~i~i~d~~ 220 (281)
+.|++++.++...
T Consensus 250 ~~~~~giH~~t~n 262 (274)
T cd00537 250 EHGVPGIHFYTLN 262 (274)
T ss_pred HcCCCEEEEcCCC
Confidence 7799998776543
No 143
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.78 E-value=1.8e+02 Score=26.48 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLD----------LFKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 189 ~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
.+-++.+.+...+-++...++|.|+|.+.-..+ .++||. ..++- .-+..+|++.+++..|.
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR-~rf~~eii~air~~vg~---- 218 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENR-ARFLLEVVDAVAEAIGA---- 218 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHh-hhHHHHHHHHHHHHhCC----
Confidence 444666777777888888999999998764322 246661 12222 25778999999987532
Q ss_pred CcEEEEecCC
Q psy15359 255 VPMTIFAKGA 264 (281)
Q Consensus 255 ~~~ilH~cG~ 264 (281)
-++.+-+.+.
T Consensus 219 d~v~vRis~~ 228 (338)
T cd02933 219 DRVGIRLSPF 228 (338)
T ss_pred CceEEEECcc
Confidence 2567766543
No 144
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=38.56 E-value=14 Score=28.32 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=23.6
Q ss_pred cccccCCCCChHHHHHHHHcCCCCCccccccc
Q psy15359 5 SEEKMTFPPLKNDRLLRAARGEEVDKIPIWIM 36 (281)
Q Consensus 5 ~~~~~~~~~~~~ERv~aal~~~~~DRVPv~~~ 36 (281)
|+++++-|=.+|..--+-++.+-||||||..-
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvE 33 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVE 33 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEe
Confidence 56788888754444445566789999999986
No 145
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.07 E-value=2.3e+02 Score=25.75 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=27.5
Q ss_pred hhCHHHHHHHHHHHHHH----------------------HHHHHHHHHHhCCCEEEEecC
Q psy15359 182 YKYPEESKKLLEILTNV----------------------IVDYLVGQAKAGAQLLQLFES 219 (281)
Q Consensus 182 ~~~Pe~v~~lle~i~d~----------------------~i~~~~~~~e~G~d~i~i~d~ 219 (281)
.++|+.+.++++.+.+. ..+.++++.++|+|+|.+...
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 45777777777766553 456677778999999987753
No 146
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=37.90 E-value=16 Score=18.76 Aligned_cols=10 Identities=10% Similarity=-0.090 Sum_probs=7.8
Q ss_pred EEEEecCCcc
Q psy15359 257 MTIFAKGAPK 266 (281)
Q Consensus 257 ~ilH~cG~~~ 266 (281)
+|+|+|=...
T Consensus 2 nilhicvtsk 11 (24)
T PF08053_consen 2 NILHICVTSK 11 (24)
T ss_pred ceEEEEEeee
Confidence 6899997654
No 147
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=37.70 E-value=45 Score=27.29 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 222 EYLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 222 ~~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
..++.+.|..+++.|.|+|.+.+++.
T Consensus 81 t~f~Kk~Y~~yiK~YmK~vk~~L~e~ 106 (172)
T PTZ00151 81 TPFTKKEYSTYIKKYMQRIKAYLEEK 106 (172)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 34799999999999999999999864
No 148
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=37.53 E-value=1.4e+02 Score=26.12 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCEEEEe---cC---CC---CCCCHHHHHHHhHHHHHHHHHHHH
Q psy15359 199 IVDYLVGQAKAGAQLLQLF---ES---NA---EYLDLDLFKEFALPYINTINEKVK 245 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~---d~---~~---~~iSp~~f~ef~~Py~k~l~~~i~ 245 (281)
+...+++.+.+|+|++++- || ++ ..|+|+.|++++.. ++++.+.++
T Consensus 203 v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~-l~~i~~~~~ 257 (258)
T TIGR01362 203 VPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEK-LLAIDALTK 257 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHH-HHHHHHHhh
Confidence 4456778899999998663 32 22 24999999998874 355555443
No 149
>PHA02902 putative IMV membrane protein; Provisional
Probab=37.08 E-value=20 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=12.8
Q ss_pred cccccccCCCCChHHHHHHH
Q psy15359 3 SVSEEKMTFPPLKNDRLLRA 22 (281)
Q Consensus 3 ~~~~~~~~~~~~~~ERv~aa 22 (281)
+-++|+|+||| .-++|.
T Consensus 46 ~d~~F~D~lTp---DQirAl 62 (70)
T PHA02902 46 DDPLFKDSLTP---DQIKAL 62 (70)
T ss_pred CCchhhccCCH---HHHHHH
Confidence 45889999999 555553
No 150
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.83 E-value=89 Score=27.70 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNP 277 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~ 277 (281)
++-++..+++|+|+| ..|. +||++-+ ++++.+++...+ ..+.+-..|.++ .+..+..++.|
T Consensus 192 leea~~a~~agaDiI-~LDn----~~~e~l~--------~~v~~l~~~~~~----~~~~leaSGGI~~~ni~~yA~tGvD 254 (278)
T PRK08385 192 LEDALKAAKAGADII-MLDN----MTPEEIR--------EVIEALKREGLR----ERVKIEVSGGITPENIEEYAKLDVD 254 (278)
T ss_pred HHHHHHHHHcCcCEE-EECC----CCHHHHH--------HHHHHHHhcCcC----CCEEEEEECCCCHHHHHHHHHcCCC
Confidence 455667788999976 4454 4777644 444556553111 246788999987 47788888888
Q ss_pred CCCC
Q psy15359 278 MLST 281 (281)
Q Consensus 278 ~~~~ 281 (281)
.+|+
T Consensus 255 ~Is~ 258 (278)
T PRK08385 255 VISL 258 (278)
T ss_pred EEEe
Confidence 8774
No 151
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=36.66 E-value=77 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
|..++.++++.++|||+|++.. ..-|++..++++.
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~---~~~~~~ei~~~~~ 200 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHS---RQKTPDEILAFVK 200 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecC---CCCCHHHHHHHHH
Confidence 6778889999999999986632 1255666555443
No 152
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=36.63 E-value=2.3e+02 Score=25.56 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=26.1
Q ss_pred hhCHHHHHHHHHHHHH----------------------HHHHHHHHHHHhCCCEEEEec
Q psy15359 182 YKYPEESKKLLEILTN----------------------VIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 182 ~~~Pe~v~~lle~i~d----------------------~~i~~~~~~~e~G~d~i~i~d 218 (281)
.++|+.+.++++.+.+ .+.+.++++.++|+|+|.+..
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 4567777777666544 345667777899999987665
No 153
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.10 E-value=1.8e+02 Score=25.49 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=28.8
Q ss_pred HhhCHHHHHHHHHHHHHH-----------------HHHHHHHHHHhCCCEEEEec
Q psy15359 181 LYKYPEESKKLLEILTNV-----------------IVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 181 l~~~Pe~v~~lle~i~d~-----------------~i~~~~~~~e~G~d~i~i~d 218 (281)
+.++|+.+.++++.+.+. ..+.++.+.++|+|+|.+..
T Consensus 143 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 143 LGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred cccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 456788888888777653 46778888899999987754
No 154
>KOG2544|consensus
Probab=34.55 E-value=68 Score=30.64 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHHcCCCccEEE--e-cCcH----HHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy15359 129 KELNYVFEAITLTRHKLEGKVPLIG--F-SGAP----WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVD 201 (281)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~i~~--~-~~gP----f~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~ 201 (281)
+.+..+-.++.+++...+++.-|+- . ..-| .+.-.-++ ..-.++..++..+|.-..++. +-.+.-+
T Consensus 450 Gkf~~ids~l~~v~smi~dga~IiDiGgqSTrP~a~~iS~eEEir------R~iP~ikavR~~~e~~~v~iS-iDTy~S~ 522 (711)
T KOG2544|consen 450 GKFQSIDSALSRVRSMISDGADIIDIGGQSTRPMASRISSEEEIR------RLIPVIKAVRGMTEMPQVLIS-IDTYNSE 522 (711)
T ss_pred CccccHHHHHHHHHHHhcCCceEEeecCccCCCCccccchHHHHH------HHhHHHHHHhcccccCceeEE-EechhhH
Confidence 4566566677777777776654431 1 1122 22111121 011233333333333222222 2335567
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCC
Q psy15359 202 YLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSN 276 (281)
Q Consensus 202 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~ 276 (281)
.++..+++|||++ .|-++|.+.+.|+. + +.+. + ....+.|.-|+.-....+.+|..
T Consensus 523 VAkeAI~~GadIi--NDvsgG~~D~nM~~---------v---vAe~--~---vpy~imHmRGdp~TM~~l~~ye~ 578 (711)
T KOG2544|consen 523 VAKEAIKNGADII--NDVSGGLLDENMHK---------V---VAES--E---VPYMIMHMRGDPCTMQNLENYEY 578 (711)
T ss_pred HHHHHHhccchhe--eccccccCchhhHH---------H---Hhhc--C---CCEEEEeccCChHHHHHHhhhhH
Confidence 8889999999974 78788889998863 2 2222 2 13588999999887777777764
No 155
>PRK09806 tryptophanase leader peptide; Provisional
Probab=34.21 E-value=20 Score=18.77 Aligned_cols=10 Identities=10% Similarity=-0.090 Sum_probs=7.8
Q ss_pred EEEEecCCcc
Q psy15359 257 MTIFAKGAPK 266 (281)
Q Consensus 257 ~ilH~cG~~~ 266 (281)
+|+|+|=...
T Consensus 2 nilhicvtsk 11 (26)
T PRK09806 2 NILHICVTSK 11 (26)
T ss_pred cEEEEEEeee
Confidence 6899997654
No 156
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=34.04 E-value=1.7e+02 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.114 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHH
Q psy15359 190 KLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINT 239 (281)
Q Consensus 190 ~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~ 239 (281)
++.+.-.+..++.++.+++.|||+|.+....+ .++++.=.+.+.|..++
T Consensus 19 ~~~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~~ee~~r~v~~i~~ 67 (252)
T cd00740 19 LIKAEDYDEALDVARQQVEGGAQILDLNVDYG-GLDGVSAMKWLLNLLAT 67 (252)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHHHHHHHHHHHHH
Confidence 33445557778899999999999998865332 46654433344444443
No 157
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=33.17 E-value=1.5e+02 Score=30.62 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++..+.++.+.++|++++.+- +.+++|-|.- .++|+.++++.. + .|+-+|.+.+.+
T Consensus 693 L~YY~~lA~el~~~GaHIlaIK-DMAGLLKP~A--------A~~Li~aLr~~~-d----lPIHlHTHDTsG 749 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAIK-DMAGLLKPAA--------AYRLISALRETV-D----LPIHLHTHDTSG 749 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEeh-hhhhccCHHH--------HHHHHHHHHHhc-C----CceEEeccCCCc
Confidence 4455666777777888876554 4455666654 467888999876 5 899999988754
No 158
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.83 E-value=2.8e+02 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Q psy15359 187 ESKKLLEILTNVIVDYLVGQAKAGAQLLQLFES 219 (281)
Q Consensus 187 ~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~ 219 (281)
.-.++.+.=.+..++.++.+++.|||+|.+...
T Consensus 15 ~~~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~ 47 (261)
T PRK07535 15 IAEAIEAKDAAFIQKLALKQAEAGADYLDVNAG 47 (261)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 334555666778889999999999999877643
No 159
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=32.52 E-value=45 Score=29.37 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccC-CCCCcEEEEe---cCCcc---cchhhhcCCCCCC
Q psy15359 228 LFKEFALPYINTINEKVKAQLKQM-NNDVPMTIFA---KGAPK---QGHNCYNYSNPML 279 (281)
Q Consensus 228 ~f~ef~~Py~k~l~~~i~~~~~~~-~~~~~~ilH~---cG~~~---~~~~~~~~~~~~~ 279 (281)
.|-.|..|-.+++.+.+|... .+ .|+.|+++|| ||-++ ++|.++..+.+-+
T Consensus 192 nW~D~~~p~i~sl~~~~~sl~-~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~ 249 (302)
T COG5599 192 NWVDFNVPDIRSLTEVIHSLN-DSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTL 249 (302)
T ss_pred CccccCCcCHHHHHHHHHHhh-cCcCCCCCEEEEeccCCCCcceeeeHHHHHhcccccc
Confidence 355566667788888888763 22 2568999998 55553 6888888777654
No 160
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.21 E-value=2.2e+02 Score=25.68 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CEEEEec-CCCCCC---CHH-HHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 191 LLEILTNVIVDYLVGQAKAGA--QLLQLFE-SNAEYL---DLD-LFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 191 lle~i~d~~i~~~~~~~e~G~--d~i~i~d-~~~~~i---Sp~-~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
+-..+-++....+..+.+.|+ |.+++.. ..++++ ..- .|.++.. .+++-+.++++-.|. +++++|..-
T Consensus 150 lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~-L~n~g~~avrev~p~----ikv~lHla~ 224 (403)
T COG3867 150 LKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA-LLNAGIRAVREVSPT----IKVALHLAE 224 (403)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHH-HHHHHhhhhhhcCCC----ceEEEEecC
Confidence 334456666677778888995 5677765 445666 222 6777665 556777788877676 888888653
No 161
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=31.95 E-value=1.1e+02 Score=26.91 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCC--CCCCCHH--HHHHHhHHHHHHHHHHHHHhhcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESN--AEYLDLD--LFKEFALPYINTINEKVKAQLKQ 250 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~--~~~iSp~--~f~ef~~Py~k~l~~~i~~~~~~ 250 (281)
..+-++++.++|+|.|+..-.+ ++.+.-+ .=-+-.....+++++++++..|+
T Consensus 159 ~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 159 NEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT
T ss_pred CHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4566788889999998665332 2322221 12344566788999999887554
No 162
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=31.65 E-value=1.9e+02 Score=25.47 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=11.6
Q ss_pred HHHHHHHcCCCccEEEecCc
Q psy15359 138 ITLTRHKLEGKVPLIGFSGA 157 (281)
Q Consensus 138 ~~~l~~~~~~~~~i~~~~~g 157 (281)
++...+..++++||++.+++
T Consensus 63 ~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 63 LEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred HHHHHHHhCCCCCEEecCCC
Confidence 34444555566788776654
No 163
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=31.64 E-value=52 Score=18.58 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=10.4
Q ss_pred HHHHHHHHhCCCEE
Q psy15359 201 DYLVGQAKAGAQLL 214 (281)
Q Consensus 201 ~~~~~~~e~G~d~i 214 (281)
+..+.++++|+|+|
T Consensus 11 ~~~~~~l~~GVDgI 24 (30)
T PF13653_consen 11 ASWRELLDLGVDGI 24 (30)
T ss_dssp HHHHHHHHHT-SEE
T ss_pred HHHHHHHHcCCCEe
Confidence 34578899999997
No 164
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=31.33 E-value=2.7e+02 Score=24.52 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=48.9
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCC-----------------CCCHHH
Q psy15359 181 LYKYPEESKKLLEILTNV---------------IVDYLVGQAKAGAQLLQLFESNAE-----------------YLDLDL 228 (281)
Q Consensus 181 l~~~Pe~v~~lle~i~d~---------------~i~~~~~~~e~G~d~i~i~d~~~~-----------------~iSp~~ 228 (281)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+.....+ .+|..
T Consensus 138 l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~- 216 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP- 216 (300)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch-
Confidence 445666666666665543 466778888999999977532211 12322
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc---chhhhcCCCCC
Q psy15359 229 FKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ---GHNCYNYSNPM 278 (281)
Q Consensus 229 f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~---~~~~~~~~~~~ 278 (281)
-.+|...+.+..+++.. + +|+| .+|.+.. ..+++..+.+.
T Consensus 217 ---~~~~~~l~~v~~i~~~~-~----ipvi--~~GGI~s~~da~~~l~~GAd~ 259 (300)
T TIGR01037 217 ---AIKPIALRMVYDVYKMV-D----IPII--GVGGITSFEDALEFLMAGASA 259 (300)
T ss_pred ---hhhHHHHHHHHHHHhcC-C----CCEE--EECCCCCHHHHHHHHHcCCCc
Confidence 23444456666666643 3 5643 5777753 33454555543
No 165
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=31.18 E-value=28 Score=24.66 Aligned_cols=12 Identities=8% Similarity=-0.155 Sum_probs=10.0
Q ss_pred cccccccCCCCC
Q psy15359 3 SVSEEKMTFPPL 14 (281)
Q Consensus 3 ~~~~~~~~~~~~ 14 (281)
+-|+|+|+|||-
T Consensus 44 ~ds~F~D~lTpD 55 (92)
T PHA02681 44 GASSFEDKMTDD 55 (92)
T ss_pred CCchhhccCCHH
Confidence 458999999993
No 166
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.05 E-value=2e+02 Score=25.48 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCEEEEe---cC---CC---CCCCHHHHHHHhHHHHHHHHHHHHH
Q psy15359 199 IVDYLVGQAKAGAQLLQLF---ES---NA---EYLDLDLFKEFALPYINTINEKVKA 246 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~---d~---~~---~~iSp~~f~ef~~Py~k~l~~~i~~ 246 (281)
+...+++.+.+|+|++++- || ++ ..|+++.|++++.. ++++.+.+++
T Consensus 219 v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~-l~~i~~~~~~ 274 (281)
T PRK12457 219 VLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQ-VKALDDLVKS 274 (281)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHH-HHHHHHHHcc
Confidence 3445788899999998663 32 22 25999999998774 4666555543
No 167
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.88 E-value=2e+02 Score=25.09 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCC
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYS 275 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~ 275 (281)
.+++.++.+.+.|+..+++...... ..++.+ ..+.+++.+.+++. + +++..+ .|... .+..|.+.|
T Consensus 66 ei~~~~~~~~~~g~~~~~l~~~g~~-~~~~~~----~~~~~~i~~~~~~~--~----i~~~~~-~g~~~~e~l~~Lk~aG 133 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCLVASGRG-PKDREF----MEYVEAMVQIVEEM--G----LKTCAT-LGLLDPEQAKRLKDAG 133 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEEEecCC-CChHHH----HHHHHHHHHHHHhC--C----CeEEec-CCCCCHHHHHHHHHcC
Confidence 3355565666778887655543333 344443 45677777777654 5 655444 35443 466677777
Q ss_pred CCCC
Q psy15359 276 NPML 279 (281)
Q Consensus 276 ~~~~ 279 (281)
.+.+
T Consensus 134 ~~~v 137 (296)
T TIGR00433 134 LDYY 137 (296)
T ss_pred CCEE
Confidence 6543
No 168
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.85 E-value=1.6e+02 Score=26.28 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 186 EESKKLLEILTNV-----------IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 186 e~v~~lle~i~d~-----------~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
+.+.+.++.+-.. .++-++..+++|+|.|.+ | -+||++-++.+. .+++..
T Consensus 174 ~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~L-D----n~~~e~l~~av~--------~~~~~~------ 234 (284)
T PRK06096 174 QDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQL-D----KFSPQQATEIAQ--------IAPSLA------ 234 (284)
T ss_pred ccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEE-C----CCCHHHHHHHHH--------HhhccC------
Confidence 3455555555554 556677788999998744 3 478988777553 334321
Q ss_pred CcEEEEecCCccc--chhhhcCCCCCCCC
Q psy15359 255 VPMTIFAKGAPKQ--GHNCYNYSNPMLST 281 (281)
Q Consensus 255 ~~~ilH~cG~~~~--~~~~~~~~~~~~~~ 281 (281)
..+.+=..|.++. +..+...+.|.+|+
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 2467888888873 66777777776653
No 169
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=29.76 E-value=3.5e+02 Score=24.52 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=46.9
Q ss_pred hCHHHHHHHHHHHHH------------------------HHHHHHHHHHHhCCCEEEEecCCCC--------------CC
Q psy15359 183 KYPEESKKLLEILTN------------------------VIVDYLVGQAKAGAQLLQLFESNAE--------------YL 224 (281)
Q Consensus 183 ~~Pe~v~~lle~i~d------------------------~~i~~~~~~~e~G~d~i~i~d~~~~--------------~i 224 (281)
.+|+.+.++++.+.+ .+.+.++++.++|+|+|.......+ -+
T Consensus 186 ~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGl 265 (335)
T TIGR01036 186 QYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGL 265 (335)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcc
Confidence 467777777766643 3455677778999999977654321 12
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchh
Q psy15359 225 DLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHN 270 (281)
Q Consensus 225 Sp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~ 270 (281)
|- .-++|.-.+.+..+++..++ .+-+-.||-+.-.++
T Consensus 266 SG----~~i~p~al~~v~~~~~~~~~-----~ipiig~GGI~~~~d 302 (335)
T TIGR01036 266 SG----KPLQDKSTEIIRRLYAELQG-----RLPIIGVGGISSAQD 302 (335)
T ss_pred cC----HHHHHHHHHHHHHHHHHhCC-----CCCEEEECCCCCHHH
Confidence 22 23456666777777665322 234556777654443
No 170
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=29.66 E-value=2.9e+02 Score=24.86 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCEEEEecCC-CCCCCHHHH--HHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESN-AEYLDLDLF--KEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSN 276 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f--~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~ 276 (281)
.+.-++++++|+|.|. -..+ ++.++-+.| +.-++.-.++-.+..++.....++ . -=-++-|+++..+.......
T Consensus 56 ~~IH~aY~eAGADiIe-TNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~-~-k~rfVaGsiGPt~k~~~~~~ 132 (311)
T COG0646 56 EAIHRAYIEAGADIIE-TNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGD-P-KPRFVAGSIGPTNKTLSISP 132 (311)
T ss_pred HHHHHHHHhccCcEEE-ecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCC-C-CceEEEEeccCcCCcCCcCC
Confidence 3456788999999863 3444 356777766 556677777666655554211000 1 12344566665555444433
No 171
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=29.37 E-value=1.5e+02 Score=27.20 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPM 278 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~ 278 (281)
.+.+++++++|+|.+++ |...+ -|. +..+.+..+++..|. +++|-=.+.+.....+|.+.+.+-
T Consensus 110 ~er~~~L~~agvD~ivI-D~a~g-~s~---------~~~~~ik~ik~~~~~----~~viaGNV~T~e~a~~L~~aGad~ 173 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVI-DSAHG-HSE---------HVIDMIKKIKKKFPD----VPVIAGNVVTYEGAKDLIDAGADA 173 (352)
T ss_dssp HHHHHHHHHTT-SEEEE-E-SST-TSH---------HHHHHHHHHHHHSTT----SEEEEEEE-SHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHcCCCEEEc-cccCc-cHH---------HHHHHHHHHHHhCCC----ceEEecccCCHHHHHHHHHcCCCE
Confidence 46677888999998744 53322 121 122345567776555 677766666666777888877653
No 172
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=28.68 E-value=1.3e+02 Score=25.84 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.4
Q ss_pred HHHhhCHHHHHHHHHHHHH---------------HHHHHHHHHHHhCCCEEEE
Q psy15359 179 HWLYKYPEESKKLLEILTN---------------VIVDYLVGQAKAGAQLLQL 216 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d---------------~~i~~~~~~~e~G~d~i~i 216 (281)
..|.++||.+.++++.+.+ ..++.++.+.++|+|.+.+
T Consensus 119 ~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv 171 (233)
T cd02911 119 EALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEKAGADIIHV 171 (233)
T ss_pred hHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEE
Confidence 4567799999999998775 3567788888999998755
No 173
>PLN02389 biotin synthase
Probab=28.63 E-value=2.5e+02 Score=26.06 Aligned_cols=72 Identities=7% Similarity=0.023 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYN 273 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~ 273 (281)
.+.+++.++...+.|+..+.+..++.+...++. ..+++.++++.+++. + .. +.-+.|... .+..|.+
T Consensus 118 ~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~----~~e~i~eiir~ik~~--~----l~-i~~s~G~l~~E~l~~Lke 186 (379)
T PLN02389 118 KDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKT----NFNQILEYVKEIRGM--G----ME-VCCTLGMLEKEQAAQLKE 186 (379)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCCChh----HHHHHHHHHHHHhcC--C----cE-EEECCCCCCHHHHHHHHH
Confidence 344455666667889998877655544444433 237778888888854 3 33 444556443 4666777
Q ss_pred CCCCC
Q psy15359 274 YSNPM 278 (281)
Q Consensus 274 ~~~~~ 278 (281)
.|.+.
T Consensus 187 AGld~ 191 (379)
T PLN02389 187 AGLTA 191 (379)
T ss_pred cCCCE
Confidence 77664
No 174
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=28.32 E-value=1.3e+02 Score=26.79 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHh
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFA 233 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~ 233 (281)
.+..++.++++.++|||.|++.. .-|+++.++|.
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g----~~~~e~i~~~~ 193 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEA----LTSLEEFRQFA 193 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC----CCCHHHHHHHH
Confidence 45678889999999999986642 23566555443
No 175
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=1.2e+02 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCEEEEecC-CCCCCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 200 VDYLVGQAKAGAQLLQLFES-NAEYLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~-~~~~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
++-.+.++++|||.|.+... .+. =++. .+|...-+++.++.+|+.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~-R~~a--~nfs~~~l~e~i~~ah~~ 61 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGL-RRRA--LNFSVEDLAEAVELAHSA 61 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCccccc-cccc--ccCCHHHHHHHHHHHHHc
Confidence 34566778999999977765 221 1111 456666689999999997
No 176
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=27.91 E-value=1.2e+02 Score=27.09 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=46.1
Q ss_pred hCHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 183 KYPEESKKLLEILT--------NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 183 ~~Pe~v~~lle~i~--------d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
.+|+.+.++.+.+. .....-++.+.++|+|+| | -...++| ...++..+|..
T Consensus 54 ~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiI---D-eTe~lrP----------ade~~~~~K~~------- 112 (287)
T TIGR00343 54 SDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYI---D-ESEVLTP----------ADWTFHIDKKK------- 112 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEE---E-ccCCCCc----------HHHHHHHHHHH-------
Confidence 48888888887642 223455667789999987 4 2224777 35666667664
Q ss_pred CcEEEEecCCcccch--hhhcCCCCCCC
Q psy15359 255 VPMTIFAKGAPKQGH--NCYNYSNPMLS 280 (281)
Q Consensus 255 ~~~ilH~cG~~~~~~--~~~~~~~~~~~ 280 (281)
...++.||..+.-+ .-.+-|.++++
T Consensus 113 -f~vpfmad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 113 -FKVPFVCGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred -cCCCEEccCCCHHHHHHHHHCCCCEEe
Confidence 24567777766433 23344444444
No 177
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=27.62 E-value=1.8e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHcCCCccEEEe--cCcHHHHHHHHHhCCCCCchHHHHHHHhhC-HHHHHHHHHHHHHHHH
Q psy15359 131 LNYVFEAITLTRHKLEGKVPLIGF--SGAPWTLMSYMIEGGGSKTMSKSKHWLYKY-PEESKKLLEILTNVIV 200 (281)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~i~~~--~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~-Pe~v~~lle~i~d~~i 200 (281)
.+.-++.++++++++++++||++. +.+.=+....++-|- ..-++...++.+ |..++++.+-+...+-
T Consensus 224 kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA---~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 224 KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGA---SAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCC---chheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 466788899999999889999864 345555566666442 356777777777 9888887776655543
No 178
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.60 E-value=2.8e+02 Score=25.31 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------H---HHHhHHHHHHHHHHHHHhhcc-CCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLDL------F---KEFALPYINTINEKVKAQLKQ-MNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~~------f---~ef~~Py~k~l~~~i~~~~~~-~~~~~~~ 257 (281)
++.+.+...+-++.+.++|.|+|.+....+ .|+||-. | -+-=..+..+|++.+++..|. .+.+.++
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 445555666777778899999997753222 2344411 1 011234677899999886530 0012667
Q ss_pred EEEecCC
Q psy15359 258 TIFAKGA 264 (281)
Q Consensus 258 ilH~cG~ 264 (281)
.+.+.+.
T Consensus 219 ~~R~s~~ 225 (353)
T cd04735 219 GYRFSPE 225 (353)
T ss_pred EEEECcc
Confidence 7766653
No 179
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.52 E-value=2.9e+02 Score=25.06 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH----------HHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLDL----------FKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~~----------f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++.+.++|.|+|.+....+ .||||-. .+.- .-+..+|++.+++.. + .++
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR-~Rf~~eii~~ir~~~-~----~~v 210 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENR-YRFLREIIDAVKEVW-D----GPL 210 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHH-HHHHHHHHHHHHHhc-C----CCe
Confidence 445556666778888899999997764322 2455521 2222 346778899998864 3 567
Q ss_pred EEEecC
Q psy15359 258 TIFAKG 263 (281)
Q Consensus 258 ilH~cG 263 (281)
.+-+..
T Consensus 211 ~vRis~ 216 (337)
T PRK13523 211 FVRISA 216 (337)
T ss_pred EEEecc
Confidence 776664
No 180
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.32 E-value=1.4e+02 Score=26.33 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEe---cCC---C---CCCCHHHHHHHhHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLF---ESN---A---EYLDLDLFKEFALP 235 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~---d~~---~---~~iSp~~f~ef~~P 235 (281)
+...-.+++.+.+|+|++.+- +|- + -.|+|+.|++|+.-
T Consensus 229 ~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~ 276 (286)
T COG2876 229 DLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKE 276 (286)
T ss_pred hhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHH
Confidence 345567788899999998542 332 2 24999999998753
No 181
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=27.30 E-value=2.3e+02 Score=26.42 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecC
Q psy15359 179 HWLYKYPEESKKLLEILTNV---------------IVDYLVGQAKAGAQLLQLFES 219 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d~---------------~i~~~~~~~e~G~d~i~i~d~ 219 (281)
..+.++|+.+.++++.+.+. +.+.++++.++|+|++.+...
T Consensus 147 ~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt 202 (420)
T PRK08318 147 SAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINT 202 (420)
T ss_pred ccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecc
Confidence 34668999999999988653 456777788999999876543
No 182
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.26 E-value=4.8e+02 Score=23.71 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCccEEE--ecCcHHHHHHHHHhCCCCCchHHHHHHHhh-CHHHHHHHHHHHHHHH
Q psy15359 132 NYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHWLYK-YPEESKKLLEILTNVI 199 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~~--~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~-~Pe~v~~lle~i~d~~ 199 (281)
+..++.++.+++.+++++||++ .+..+=.....+..| . +.-.+.+.++. .|..+.++.+-+.+.+
T Consensus 273 ~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG--A-d~V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 273 ERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG--A-SLVQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC--C-CHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4566788888888876788875 455776767666633 2 34566676654 6999988877666554
No 183
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=27.04 E-value=1.6e+02 Score=26.10 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.+++.+++|++.| -|-++ +-.|++++. ++++ +. ..+++|.+|...
T Consensus 101 ~va~~AL~~GadiI--NDI~g-~~d~~~~~~------------~a~~-~~----~vVlmh~~g~p~ 146 (282)
T PRK11613 101 EVIRESAKAGAHII--NDIRS-LSEPGALEA------------AAET-GL----PVCLMHMQGNPK 146 (282)
T ss_pred HHHHHHHHcCCCEE--EECCC-CCCHHHHHH------------HHHc-CC----CEEEEcCCCCCC
Confidence 34566778899964 55443 335666554 2343 12 457789988543
No 184
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.45 E-value=1e+02 Score=25.35 Aligned_cols=33 Identities=12% Similarity=0.386 Sum_probs=27.1
Q ss_pred CEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHH
Q psy15359 212 QLLQLFESNAEYLDLDLFKEFALPYINTINEKVK 245 (281)
Q Consensus 212 d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~ 245 (281)
|.+++.|.+++ ++.+.|++.++++.+++++.+.
T Consensus 2 Di~fllD~S~S-i~~~~f~~~~~~f~~~lv~~l~ 34 (192)
T cd01473 2 DLTLILDESAS-IGYSNWRKDVIPFTEKIINNLN 34 (192)
T ss_pred cEEEEEeCCCc-ccHHHHHHHHHHHHHHHHHhCc
Confidence 66667777665 7889999889999999999875
No 185
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=26.43 E-value=5.2e+02 Score=26.05 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=57.4
Q ss_pred CccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHHHHhCCCEEEEecCCCCCCCH
Q psy15359 148 KVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNV-IVDYLVGQAKAGAQLLQLFESNAEYLDL 226 (281)
Q Consensus 148 ~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~-~i~~~~~~~e~G~d~i~i~d~~~~~iSp 226 (281)
++||+..-...|+++..+-+ +. -.--.+|++++..+++.+.++ -.+.+...+ +.. .+....+||
T Consensus 298 ~ipVl~t~~dT~~ta~~i~~------~~--~~i~~~d~~ki~~~~~~~~~~vD~~~l~~~l--~~~-----~~~~~~~~p 362 (684)
T PRK05632 298 GLPVLSVDTNTYQTALRLQS------FN--GEVPVDDHERIETVLELVASHVDTDELLERL--TAT-----SERSRRLSP 362 (684)
T ss_pred CCCEEEecCCHHHHHHHHHH------hc--CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHh--ccC-----CCCCCCcCH
Confidence 68999887888998887651 21 123356889999888887776 333333322 111 112245999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 227 DLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 227 ~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+|.+ ++++.+++. .+.|...+|...
T Consensus 363 ~~~~~-------~l~~~a~~~-------~~~i~~~e~~d~ 388 (684)
T PRK05632 363 PAFRY-------QLTERARAA-------KKRIVLPEGDEP 388 (684)
T ss_pred HHHHH-------HHHHHHhcC-------CCEEEEeCCCCH
Confidence 98766 677777653 357888888754
No 186
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.38 E-value=4.1e+02 Score=22.71 Aligned_cols=62 Identities=5% Similarity=-0.072 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESN-AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
.+.+.+.++.....|+..+.+.-.. +..-+.+...+.+.-.++++.+.++++ | +.+.+|..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~iE~~~ 151 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI--G----MDLILEPLT 151 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C----CEEEEecCC
Confidence 4444555666678899987554321 122355555556667999999999987 7 888888765
No 187
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.30 E-value=2.3e+02 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCEEEEe---cC---CC---CCCCHHHHHHHhHHHHHHH
Q psy15359 199 IVDYLVGQAKAGAQLLQLF---ES---NA---EYLDLDLFKEFALPYINTI 240 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~---d~---~~---~~iSp~~f~ef~~Py~k~l 240 (281)
+...+++.+.+|+|++++- || ++ ..|+|+.|++++. .++++
T Consensus 211 v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~-~l~~i 260 (264)
T PRK05198 211 VPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLE-QLKAI 260 (264)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHH-HHHHH
Confidence 4456778899999998653 32 22 2599999998876 33444
No 188
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.09 E-value=4.2e+02 Score=22.72 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC--CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN--AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~--~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+...+.++...+.|++.+.+.... ...-+++.+ +.+...++++.+.+++. | +.+.+|.+++.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~--g----v~l~lE~~~~~ 157 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAA--Q----VMLAVEIMDTP 157 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHh--C----CEEEEEecCcc
Confidence 344555666678899988664211 111233444 55557889999999887 7 89999887643
No 189
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=25.88 E-value=1.3e+02 Score=26.60 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 186 EESKKLLEILTNV-----------IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 186 e~v~~lle~i~d~-----------~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
+.+.++++.+-.. ..+-++..+++|+|.| ..| -+||+.-++ .++.+++. +
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI-~lD----n~~~e~l~~--------~v~~l~~~--~---- 233 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDIL-QLD----KFTPQQLHH--------LHERLKFF--D---- 233 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEE-EEC----CCCHHHHHH--------HHHHHhcc--C----
Confidence 3455555555544 3456677789999987 555 377777544 44455543 2
Q ss_pred CcEEEEecCCccc--chhhhcCCCCCCCC
Q psy15359 255 VPMTIFAKGAPKQ--GHNCYNYSNPMLST 281 (281)
Q Consensus 255 ~~~ilH~cG~~~~--~~~~~~~~~~~~~~ 281 (281)
..+.+=..|.++. +..+...+.+.+|+
T Consensus 234 ~~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 3567889999873 77788888887764
No 190
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.79 E-value=3e+02 Score=24.50 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCEEEEe---cC---CC---CCCCHHHHHHHhHHHHHHHHHHHHH
Q psy15359 198 VIVDYLVGQAKAGAQLLQLF---ES---NA---EYLDLDLFKEFALPYINTINEKVKA 246 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~---d~---~~---~~iSp~~f~ef~~Py~k~l~~~i~~ 246 (281)
++-..+++.+.+|+|++++- || ++ ..|.|+.|++++.. ++++.+.+++
T Consensus 221 ~V~~larAAvA~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~-l~~i~~~~~~ 277 (290)
T PLN03033 221 LIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEE-LIAIARVTKG 277 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHH-HHHHHHHHhc
Confidence 44456788899999998764 32 22 25999999998774 3666666654
No 191
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=25.62 E-value=1.4e+02 Score=25.16 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.+|++.+.+.|.+.+.+.-+...++.|. +-+.|...++++.+.+.... +..++++|+.-+.+
T Consensus 15 hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~--~~~~il~H~FSnGG 78 (240)
T PF05705_consen 15 HLAKYSDLYQDPGFDILLVTSPPADFFWPS---KRLAPAADKLLELLSDSQSA--SPPPILFHSFSNGG 78 (240)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHeeec---cchHHHHHHHHHHhhhhccC--CCCCEEEEEEECch
Confidence 455777777789999887766655556555 77778888888888765211 11279999987754
No 192
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=25.50 E-value=2.9e+02 Score=25.53 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCH------HHH----HHHhHHHHHHHHHHHHHhhccCCCC
Q psy15359 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDL------DLF----KEFALPYINTINEKVKAQLKQMNND 254 (281)
Q Consensus 189 ~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp------~~f----~ef~~Py~k~l~~~i~~~~~~~~~~ 254 (281)
++=++.+.+...+-++..+++|.|+|-+....+ .|+|| +.| +.- .-+..+|++++++..+. .
T Consensus 141 ~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR-~Rf~~EVv~aVr~~vg~---~ 216 (363)
T COG1902 141 EEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENR-ARFLLEVVDAVREAVGA---D 216 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHH-HHHHHHHHHHHHHHhCC---C
Confidence 444555566666778888899999998765332 23554 223 332 34778999999987643 1
Q ss_pred CcEEEEecCCcc
Q psy15359 255 VPMTIFAKGAPK 266 (281)
Q Consensus 255 ~~~ilH~cG~~~ 266 (281)
.++.+-++....
T Consensus 217 ~~vg~Rls~~d~ 228 (363)
T COG1902 217 FPVGVRLSPDDF 228 (363)
T ss_pred ceEEEEECcccc
Confidence 457777766433
No 193
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=25.17 E-value=3e+02 Score=22.78 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHHHhCCCEEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 203 LVGQAKAGAQLLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 203 ~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++...+.|+.++.+..+... ..++ +.++++++.+++. + .++..|+.+...
T Consensus 108 i~~~~~~~~~gi~~~~~~~~~~~~~--------~~~~~~~~~a~~~--~----~~i~~H~~~~~~ 158 (275)
T cd01292 108 LRRGLELGAVGLKLAGPYTATGLSD--------ESLRRVLEEARKL--G----LPVVIHAGELPD 158 (275)
T ss_pred HHHHHhcCCeeEeeCCCCCCCCCCc--------HHHHHHHHHHHHc--C----CeEEEeeCCccc
Confidence 33333357777655444332 1333 3566777778876 6 899999887764
No 194
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.10 E-value=1.9e+02 Score=26.38 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCEEEEecC-CCCCCC-------------------HHHHHHHhHH--HHHHHHHHHHHhhccCCCCCcE
Q psy15359 200 VDYLVGQAKAGAQLLQLFES-NAEYLD-------------------LDLFKEFALP--YINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~-~~~~iS-------------------p~~f~ef~~P--y~k~l~~~i~~~~~~~~~~~~~ 257 (281)
.+.+++..++|||+|=+..- ..+.|| =++|++...| ++.++.+.+.+. | +
T Consensus 33 ~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~--G------i 104 (347)
T COG2089 33 KELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKR--G------I 104 (347)
T ss_pred HHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHc--C------e
Confidence 44556667889998754321 111122 2567665555 577899999886 5 3
Q ss_pred EEEecCCc-ccchhhhcCCCCC
Q psy15359 258 TIFAKGAP-KQGHNCYNYSNPM 278 (281)
Q Consensus 258 ilH~cG~~-~~~~~~~~~~~~~ 278 (281)
++.+.=.. ...+.+..+++|.
T Consensus 105 ~~~SSPfd~~svd~l~~~~~~a 126 (347)
T COG2089 105 IFFSSPFDLTAVDLLESLNPPA 126 (347)
T ss_pred EEEecCCCHHHHHHHHhcCCCe
Confidence 34433332 3455555555543
No 195
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=24.98 E-value=2.2e+02 Score=26.77 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK-QMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~-~~~~~~~~ilH~cG~~~ 266 (281)
+.++.+++..+.|++.|.+.|..+ ...|..|.+.+. .+++..+ . .++-+|++-+.+
T Consensus 147 ~l~~~~~~~~~~ga~~i~l~DTvG-~~~P~~~~~~i~--------~l~~~v~~~----~~l~~H~HnD~G 203 (409)
T COG0119 147 FLAEVVKAAIEAGADRINLPDTVG-VATPNEVADIIE--------ALKANVPNK----VILSVHCHNDLG 203 (409)
T ss_pred HHHHHHHHHHHcCCcEEEECCCcC-ccCHHHHHHHHH--------HHHHhCCCC----CeEEEEecCCcc
Confidence 445556666788899998888776 477887766543 3333211 1 577888877654
No 196
>KOG0369|consensus
Probab=24.87 E-value=2.4e+02 Score=28.56 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc----ch
Q psy15359 194 ILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ----GH 269 (281)
Q Consensus 194 ~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~----~~ 269 (281)
+-.+..++.++.++++|.++..|-| .++.+-|+. .+-++.++++..|+ .|+-+|.+.+.++ .-
T Consensus 715 Y~L~YY~nlad~lV~agtHiL~IKD-MAG~lKP~a--------a~lLi~alRdk~Pd----lPiHvHtHDtsGagVAsMl 781 (1176)
T KOG0369|consen 715 YNLDYYLNLADKLVKAGTHILGIKD-MAGVLKPEA--------AKLLIGALRDKFPD----LPIHVHTHDTSGAGVASML 781 (1176)
T ss_pred ccHHHHHHHHHHHHhccCeEEeehh-hhcccCHHH--------HHHHHHHHHhhCCC----CceEEeccCCccHHHHHHH
Confidence 3456677778888899988765544 555677764 35678899998898 9999999887653 23
Q ss_pred hhhcCCCCC
Q psy15359 270 NCYNYSNPM 278 (281)
Q Consensus 270 ~~~~~~~~~ 278 (281)
-|...+.+.
T Consensus 782 aca~AGADV 790 (1176)
T KOG0369|consen 782 ACALAGADV 790 (1176)
T ss_pred HHHHcCCce
Confidence 344555443
No 197
>KOG1654|consensus
Probab=24.75 E-value=39 Score=25.46 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=22.8
Q ss_pred ccccccCCCCChHHHHHHHHcCCCCCccccccc
Q psy15359 4 VSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIM 36 (281)
Q Consensus 4 ~~~~~~~~~~~~~ERv~aal~~~~~DRVPv~~~ 36 (281)
.++|+++-|=.+|.-=-.-++-+-||||||..-
T Consensus 2 ~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvE 34 (116)
T KOG1654|consen 2 KSSFKERHPFEKRKAEVRRIREKYPDRIPVIVE 34 (116)
T ss_pred cchhhccCCHHHHHHHHHHHHHHCCCCCcEEEE
Confidence 467788887744432233467888999999875
No 198
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=24.62 E-value=3.6e+02 Score=24.86 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHHHHcCCCccEEEecCcH
Q psy15359 128 YKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
++|.....++++...++.|+..++++++.++
T Consensus 178 eER~~~v~~av~~a~~~TG~~~~y~~nit~~ 208 (367)
T cd08205 178 EERVRACMEAVRRANEETGRKTLYAPNITGD 208 (367)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEcCCC
Confidence 3577777788888888887777777776655
No 199
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=24.46 E-value=1.5e+02 Score=26.21 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=26.9
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEec
Q psy15359 181 LYKYPEESKKLLEILTNV---------------IVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 181 l~~~Pe~v~~lle~i~d~---------------~i~~~~~~~e~G~d~i~i~d 218 (281)
+..+|+.+.++++.+.+. ..+.++.+.++|+|++.+..
T Consensus 138 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 138 FGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEc
Confidence 445777787777777553 34567777899999987643
No 200
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=24.19 E-value=2.4e+02 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhC-CCEEEEecCCCC---C---------------CCHHHHHHHh-----------HHHHHHHHH
Q psy15359 193 EILTNVIVDYLVGQAKAG-AQLLQLFESNAE---Y---------------LDLDLFKEFA-----------LPYINTINE 242 (281)
Q Consensus 193 e~i~d~~i~~~~~~~e~G-~d~i~i~d~~~~---~---------------iSp~~f~ef~-----------~Py~k~l~~ 242 (281)
|......++....+++.+ ++.|++.|..-+ + +|++.+.+++ .+..+++++
T Consensus 91 E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 170 (325)
T cd01306 91 ELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAA 170 (325)
T ss_pred eecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 334444555555666544 899988884311 2 6666666554 356777888
Q ss_pred HHHHhhccCCCCCcEEEEecCCcccchhhhc
Q psy15359 243 KVKAQLKQMNNDVPMTIFAKGAPKQGHNCYN 273 (281)
Q Consensus 243 ~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~ 273 (281)
..++. | +++..|...+.........
T Consensus 171 ~A~~~--g----l~vasH~d~~~~~v~~a~~ 195 (325)
T cd01306 171 LARAR--G----IPLASHDDDTPEHVAEAHE 195 (325)
T ss_pred HHHHC--C----CcEEEecCCChHHHHHHHH
Confidence 88877 6 9999999876554444443
No 201
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.05 E-value=3e+02 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHhCCCEEEEe
Q psy15359 184 YPEESKKLLEILTN------------VIVDYLVGQAKAGAQLLQLF 217 (281)
Q Consensus 184 ~Pe~v~~lle~i~d------------~~i~~~~~~~e~G~d~i~i~ 217 (281)
+|+.+.++++.+.+ ...+.++.++++|+|.|.+.
T Consensus 116 ~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vh 161 (368)
T PRK08649 116 KPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQ 161 (368)
T ss_pred CHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEe
Confidence 67777777766664 36688888999999998775
No 202
>PRK08508 biotin synthase; Provisional
Probab=24.03 E-value=3.6e+02 Score=23.63 Aligned_cols=69 Identities=22% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc--cchhhhcCC
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK--QGHNCYNYS 275 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~--~~~~~~~~~ 275 (281)
+++.++...+.|+..+.+.++..+ ++.. ...|+.++++.+++..+ .+.+|.| |... .+..|.+.+
T Consensus 45 I~~~a~~a~~~g~~~~~lv~sg~~-~~~~-----~~e~~~ei~~~ik~~~p------~l~i~~s~G~~~~e~l~~Lk~aG 112 (279)
T PRK08508 45 IVQEAKMAKANGALGFCLVTSGRG-LDDK-----KLEYVAEAAKAVKKEVP------GLHLIACNGTASVEQLKELKKAG 112 (279)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-CCcc-----cHHHHHHHHHHHHhhCC------CcEEEecCCCCCHHHHHHHHHcC
Confidence 334445555669888766543322 3322 34688889999987632 2334533 4433 466777777
Q ss_pred CCCC
Q psy15359 276 NPML 279 (281)
Q Consensus 276 ~~~~ 279 (281)
.+.+
T Consensus 113 ld~~ 116 (279)
T PRK08508 113 IFSY 116 (279)
T ss_pred CCEE
Confidence 6543
No 203
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=23.98 E-value=1.6e+02 Score=26.70 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE--EecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLF----ESNA--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI--FAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~----d~~~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il--H~cG~~~ 266 (281)
+..++|.++..+-|+..|... ++.+ ..-.+..|.+-..|.+|++.+.+|++ | .++++ +.+|...
T Consensus 36 ~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--G----a~i~~QL~H~G~~~ 107 (341)
T PF00724_consen 36 DRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--G----AKIIAQLWHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--T----SEEEEEEE--GGGS
T ss_pred HHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--C----ccceeecccccccc
Confidence 356677777777777765432 1221 12233344444578899999999997 5 45444 5567554
No 204
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.88 E-value=4.7e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC--CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN--AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~--~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
+.+.+.++...+.|++.|.+.... .+.-..+. .+.+.+.++++.+.+++. | +.+.+|..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~A~~~--G----v~l~lE~~~ 155 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEET-RRRFREGLKEAVELAARA--Q----VTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHH-HHHHHHHHHHHHHHHHHc--C----CEEEEeeCC
Confidence 444455566668899987664311 11233455 455567999999999987 7 888888653
No 205
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.33 E-value=1.8e+02 Score=26.20 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc--EEEEecCCcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLF----ESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP--MTIFAKGAPK 266 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~--~ilH~cG~~~ 266 (281)
.++..+.|.+...+.|+..|... ++.+. .-.+..|.+-..|.++++.+.+|+. | .+ .-|+.+|...
T Consensus 31 ~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G----~~~~~QL~H~G~~~ 104 (336)
T cd02932 31 ATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--G----AKIGIQLAHAGRKA 104 (336)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--C----CcEEEEccCCCcCC
Confidence 46666777777777777766332 12221 2334466677789999999999997 4 34 3345577654
No 206
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=23.01 E-value=4.3e+02 Score=24.11 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCEEE---EecCCCC-----------CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 197 NVIVDYLVGQAKAGAQLLQ---LFESNAE-----------YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~---i~d~~~~-----------~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
+..++.+++..++|-+... +.|.|++ -+|.+.-.+-+.-|.+.+++.+++. | +..=+--.
T Consensus 58 ~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~--G----~~pd~VQV 131 (332)
T PF07745_consen 58 EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA--G----VTPDMVQV 131 (332)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT--T------ESEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC--C----CCccEEEe
Confidence 3456778888899976532 3355542 2788999999999999999999987 5 55445555
Q ss_pred CCcc
Q psy15359 263 GAPK 266 (281)
Q Consensus 263 G~~~ 266 (281)
||..
T Consensus 132 GNEi 135 (332)
T PF07745_consen 132 GNEI 135 (332)
T ss_dssp SSSG
T ss_pred Cccc
Confidence 6643
No 207
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.01 E-value=1.6e+02 Score=24.56 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHH--------------
Q psy15359 132 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN-------------- 197 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d-------------- 197 (281)
....++.+++++. |-+ .|-.+++.|.+.... ++.| -.+..+|+.+.++++.+.+
T Consensus 67 ~~~~~aa~~~~~a-G~d-~ieln~g~p~~~~~~--~~~G--------~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~ 134 (231)
T cd02801 67 ETLAEAAKIVEEL-GAD-GIDLNMGCPSPKVTK--GGAG--------AALLKDPELVAEIVRAVREAVPIPVTVKIRLGW 134 (231)
T ss_pred HHHHHHHHHHHhc-CCC-EEEEeCCCCHHHHhC--CCee--------ehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 3445566666552 322 233355667543221 1111 2344466666666666543
Q ss_pred ----HHHHHHHHHHHhCCCEEEEec
Q psy15359 198 ----VIVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 198 ----~~i~~~~~~~e~G~d~i~i~d 218 (281)
...++++.+.++|++.+.+..
T Consensus 135 ~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 135 DDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred CCchHHHHHHHHHHHhCCCEEEECC
Confidence 455667777789999987654
No 208
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.87 E-value=1.2e+02 Score=25.61 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCCccE-EEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHH------HHHHHH
Q psy15359 133 YVFEAITLTRHKLEGKVPL-IGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVI------VDYLVG 205 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i-~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~------i~~~~~ 205 (281)
.-+++++.+++++++ ..| .+++..+ ..+....+- |. +|+.-.--+|+.+....+.-.+.+ -| +..
T Consensus 52 ~~~~~I~~l~~~~p~-~~IGAGTVl~~-~~a~~a~~a----GA-~FivsP~~~~~vi~~a~~~~i~~iPG~~TptE-i~~ 123 (212)
T PRK05718 52 AALEAIRLIAKEVPE-ALIGAGTVLNP-EQLAQAIEA----GA-QFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSE-LML 123 (212)
T ss_pred cHHHHHHHHHHHCCC-CEEEEeeccCH-HHHHHHHHc----CC-CEEECCCCCHHHHHHHHHcCCCEeCCCCCHHH-HHH
Confidence 456777888888764 434 3456666 334433322 22 333444445555555544333322 22 556
Q ss_pred HHHhCCCEEEEecCCCCCCCHHHHHHHhHHH
Q psy15359 206 QAKAGAQLLQLFESNAEYLDLDLFKEFALPY 236 (281)
Q Consensus 206 ~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py 236 (281)
..++|++.+-+++.... .+|+..+.+-.|+
T Consensus 124 a~~~Ga~~vKlFPa~~~-gg~~~lk~l~~p~ 153 (212)
T PRK05718 124 GMELGLRTFKFFPAEAS-GGVKMLKALAGPF 153 (212)
T ss_pred HHHCCCCEEEEccchhc-cCHHHHHHHhccC
Confidence 67999999888763211 2566655555553
No 209
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=22.86 E-value=3.2e+02 Score=23.83 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 191 lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
-|+.+.|..++-++++.+.|+|++ +.+..++ ++++ .-..-..-++-.+++.++..
T Consensus 28 ~~~~vid~A~~dA~~leegG~Dav-ivEN~gD~Pf~k-~v~~~tvaaMa~iv~~v~r~ 83 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAV-IVENYGDAPFLK-DVGPETVAAMAVIVREVVRE 83 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCC-CCChHHHHHHHHHHHHHHHh
Confidence 345566677778889999999997 4444433 2333 11222233556677777654
No 210
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=22.58 E-value=1.8e+02 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.9
Q ss_pred chHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q psy15359 173 TMSKSKHWLYKYPEESKKLLEILTNVIVDYL 203 (281)
Q Consensus 173 g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~ 203 (281)
+|+.+......|||.+.++-..+.+..|+.+
T Consensus 5 ~FD~L~~LA~~dPe~fe~lr~~~~ee~I~~a 35 (83)
T PF11333_consen 5 DFDELKELAQNDPEAFEQLRQELIEEMIESA 35 (83)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 5777878888899999999988888888764
No 211
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=22.54 E-value=1.1e+02 Score=24.91 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 223 YLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 223 ~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
.++.+.|..+++.|.|+|.+.+++.
T Consensus 78 ~f~Kk~y~~yiK~Y~K~i~~kL~e~ 102 (165)
T PF00838_consen 78 SFDKKSYKAYIKDYMKKIKEKLEEN 102 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4788899999999999999888765
No 212
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.51 E-value=1.5e+02 Score=26.48 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNP 277 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~ 277 (281)
++-++..+++|+|+| ..| -+||+.-++.+ +.+++ .+.+-..|.++ -+..+...+.|
T Consensus 207 leea~~a~~agaDiI-mLD----nmspe~l~~av--------~~~~~---------~~~leaSGGI~~~ni~~yA~tGVD 264 (290)
T PRK06559 207 LAAAEEAAAAGADII-MLD----NMSLEQIEQAI--------TLIAG---------RSRIECSGNIDMTTISRFRGLAID 264 (290)
T ss_pred HHHHHHHHHcCCCEE-EEC----CCCHHHHHHHH--------HHhcC---------ceEEEEECCCCHHHHHHHHhcCCC
Confidence 356667788999987 434 37888866554 33332 35788888887 36678888888
Q ss_pred CCCC
Q psy15359 278 MLST 281 (281)
Q Consensus 278 ~~~~ 281 (281)
.+|+
T Consensus 265 ~Is~ 268 (290)
T PRK06559 265 YVSS 268 (290)
T ss_pred EEEe
Confidence 7764
No 213
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=22.47 E-value=2.7e+02 Score=24.90 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=45.2
Q ss_pred HhhCHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCC
Q psy15359 181 LYKYPEESKKLLEIL--------TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMN 252 (281)
Q Consensus 181 l~~~Pe~v~~lle~i--------~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~ 252 (281)
...+|+.+.++.+.+ -.....-++.+.++|+|+| | -...++| .-.++..+|..
T Consensus 59 Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI---D-~Te~lrp----------ad~~~~~~K~~----- 119 (293)
T PRK04180 59 RMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI---D-ESEVLTP----------ADEEYHIDKWD----- 119 (293)
T ss_pred ecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE---e-ccCCCCc----------hHHHHHHHHHH-----
Confidence 345788888776643 2222455666779999987 4 2224777 23566666654
Q ss_pred CCCcEEEEecCCcccch--hhhcCCCCCCCC
Q psy15359 253 NDVPMTIFAKGAPKQGH--NCYNYSNPMLST 281 (281)
Q Consensus 253 ~~~~~ilH~cG~~~~~~--~~~~~~~~~~~~ 281 (281)
..+++.||..+.-+ .-..-|.++++|
T Consensus 120 ---f~~~fmad~~~l~EAlrai~~GadmI~T 147 (293)
T PRK04180 120 ---FTVPFVCGARNLGEALRRIAEGAAMIRT 147 (293)
T ss_pred ---cCCCEEccCCCHHHHHHHHHCCCCeeec
Confidence 24566777665433 233444555443
No 214
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=22.46 E-value=3.7e+02 Score=22.97 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 193 EILTNVIVDYLVGQAKAGAQLLQLFESN-AEYLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 193 e~i~d~~i~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
+...+.+.+.++...+.|++.|.+.+.+ .++...+.+.+...+.....++.+.+.
T Consensus 15 ~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (269)
T cd07586 15 EENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMHADDPRLQALAEA 70 (269)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcccchHHHHHHHHH
Confidence 3344455556666667899998777644 344333333333333333444444443
No 215
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.45 E-value=2.3e+02 Score=27.25 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc---cchhh
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK---QGHNC 271 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~---~~~~~ 271 (281)
+.+...+.++.++++|++.| ..|...+. .-+..+.++.+|+..| .+.-++||+. ...++
T Consensus 224 ~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~----------~~~~~~~i~~ik~~~p-------~~~v~agnv~t~~~a~~l 285 (479)
T PRK07807 224 INGDVAAKARALLEAGVDVL-VVDTAHGH----------QEKMLEALRAVRALDP-------GVPIVAGNVVTAEGTRDL 285 (479)
T ss_pred cChhHHHHHHHHHHhCCCEE-EEeccCCc----------cHHHHHHHHHHHHHCC-------CCeEEeeccCCHHHHHHH
Confidence 34567788999999999986 44654433 2355677778887644 4455566654 44566
Q ss_pred hcCCCCCC
Q psy15359 272 YNYSNPML 279 (281)
Q Consensus 272 ~~~~~~~~ 279 (281)
.+.|.+-+
T Consensus 286 ~~aGad~v 293 (479)
T PRK07807 286 VEAGADIV 293 (479)
T ss_pred HHcCCCEE
Confidence 66666543
No 216
>PRK14847 hypothetical protein; Provisional
Probab=22.35 E-value=2.4e+02 Score=25.78 Aligned_cols=60 Identities=2% Similarity=0.022 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHh------CCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKA------GAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~------G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.+++++...+. |++.|.+.|..| .+.|..+.+.+.-. .+.+... ++ +++-+|++-+.+
T Consensus 187 dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG-~~~P~~~~~~i~~l----~~~~~~~-~~----v~i~~H~HnD~G 252 (333)
T PRK14847 187 DFAREVCDAVSAIWGPTPQRKMIINLPATVE-SSTANVYADQIEWM----HRSLARR-DC----IVLSVHPHNDRG 252 (333)
T ss_pred HHHHHHHHHHHHHhCCCccCCcEEEeCCccc-cCCHHHHHHHHHHH----HHhcCCC-CC----cEEEEEeCCCCc
Confidence 4444555544433 467787877776 47888776665433 2333221 13 678889887654
No 217
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.13 E-value=2.4e+02 Score=25.61 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec----CCC--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcE--EEEecCCcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFE----SNA--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM--TIFAKGAPK 266 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d----~~~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~--ilH~cG~~~ 266 (281)
.++..+.|.+...+.|+..|.... +.+ ..-.+..|.+-..|-++++++.+|++ | .++ -++.+|...
T Consensus 31 ~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g----~~~~~Ql~H~G~~~ 104 (343)
T cd04734 31 PSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--G----AVIMIQLTHLGRRG 104 (343)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--C----CeEEEeccCCCcCc
Confidence 466777888887777877653321 221 12335566666779999999999997 4 343 344566543
No 218
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=21.83 E-value=2e+02 Score=26.33 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc-----cchhh
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK-----QGHNC 271 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~-----~~~~~ 271 (281)
+.+++.|++..+.|+-..++..+|.+ .+ .-.++..+++..+++.. | +..|.+.+ +..++
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~~aagr~--~~-----~~~~~i~~~v~~Vk~~~-~--------le~c~slG~l~~eq~~~L 150 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCMGAAGRG--PG-----RDMEEVVEAIKAVKEEL-G--------LEVCASLGMLTEEQAEKL 150 (335)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccC--CC-----ccHHHHHHHHHHHHHhc-C--------cHHhhccCCCCHHHHHHH
Confidence 44667888999999777667766654 22 44567788888888653 3 55555544 45567
Q ss_pred hcCCCCC
Q psy15359 272 YNYSNPM 278 (281)
Q Consensus 272 ~~~~~~~ 278 (281)
.+++.+.
T Consensus 151 ~~aGvd~ 157 (335)
T COG0502 151 ADAGVDR 157 (335)
T ss_pred HHcChhh
Confidence 7777653
No 219
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=21.80 E-value=96 Score=21.65 Aligned_cols=13 Identities=15% Similarity=-0.064 Sum_probs=9.9
Q ss_pred EEEecCCcccchh
Q psy15359 258 TIFAKGAPKQGHN 270 (281)
Q Consensus 258 ilH~cG~~~~~~~ 270 (281)
-||+||..+..+.
T Consensus 40 ~l~CCG~~~~~d~ 52 (84)
T cd03151 40 TLDCCGKGNLTAL 52 (84)
T ss_pred hcCCCCCCCCcch
Confidence 4999999876553
No 220
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=21.65 E-value=5.4e+02 Score=22.63 Aligned_cols=62 Identities=5% Similarity=0.018 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEec-CCCCC-CCHHHHHHHhHHHHH----------------HHHHHHHHhhccCCCCC
Q psy15359 194 ILTNVIVDYLVGQAKAGAQLLQLFE-SNAEY-LDLDLFKEFALPYIN----------------TINEKVKAQLKQMNNDV 255 (281)
Q Consensus 194 ~i~d~~i~~~~~~~e~G~d~i~i~d-~~~~~-iSp~~f~ef~~Py~k----------------~l~~~i~~~~~~~~~~~ 255 (281)
.-.|.++..+++..+.-.+.+.++| |++++ .|++.--+...-.+| .+++.+-+. | +
T Consensus 59 vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~--G----I 132 (261)
T PF02548_consen 59 VTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDA--G----I 132 (261)
T ss_dssp --HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHT--T-----
T ss_pred cCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHC--C----C
Confidence 3444455555544444345555777 88887 999998888888877 344555454 5 9
Q ss_pred cEEEEe
Q psy15359 256 PMTIFA 261 (281)
Q Consensus 256 ~~ilH~ 261 (281)
|++=|+
T Consensus 133 PV~gHi 138 (261)
T PF02548_consen 133 PVMGHI 138 (261)
T ss_dssp -EEEEE
T ss_pred cEEEEe
Confidence 999887
No 221
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=40 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=24.1
Q ss_pred ccccCCCCChHHHHHHHHc-CCCCCcccccc
Q psy15359 6 EEKMTFPPLKNDRLLRAAR-GEEVDKIPIWI 35 (281)
Q Consensus 6 ~~~~~~~~~~~ERv~aal~-~~~~DRVPv~~ 35 (281)
.+-+.|||+--+|+..|++ |+=||-+|..-
T Consensus 5 q~In~mtPEiYQrL~~AvElGKWPdG~~Ltq 35 (90)
T COG3139 5 QIINSMTPEIYQRLSTAVELGKWPDGVALTQ 35 (90)
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCCCcCCH
Confidence 3446799988999999997 77799988753
No 222
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.37 E-value=1.7e+02 Score=26.69 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec----CCC--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcE--EEEecCCcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFE----SNA--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM--TIFAKGAPK 266 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d----~~~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~--ilH~cG~~~ 266 (281)
+++..+.|.+...+.|+..|.... +.+ ..-.+..|.+-..|.++++.+.+|++ | .++ -|+.+|...
T Consensus 35 ~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G----~~i~~QL~H~G~~~ 108 (337)
T PRK13523 35 VTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--G----AKAAIQLAHAGRKA 108 (337)
T ss_pred CCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--C----CEEEEEccCCCCCC
Confidence 356667777777777777653321 211 12234456666689999999999997 4 343 455677654
No 223
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=21.31 E-value=1.1e+02 Score=22.52 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHH-HHHHHHHHhh
Q psy15359 204 VGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYIN-TINEKVKAQL 248 (281)
Q Consensus 204 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k-~l~~~i~~~~ 248 (281)
..+.++|+.++++.+=.| +||+.|.-|...-+- ..++++++.+
T Consensus 21 N~mad~GiTGFfl~eYrG--vsPd~wkgf~~~EDpE~aik~i~D~s 64 (110)
T COG4075 21 NIMADAGITGFFLHEYRG--VSPDKWKGFSKEEDPESAIKAIRDLS 64 (110)
T ss_pred HHHHhcCcceEEEEEecC--cChhHhcCcccccCHHHHHHHHHHhh
Confidence 344578999976655443 899999888775432 4556666653
No 224
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.16 E-value=3.5e+02 Score=23.94 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCccEEEe--cCcHHHHHHHHHhCCCCCchHHHHHHHh-hCHHHHHHHHHHHHH
Q psy15359 132 NYVFEAITLTRHKLEGKVPLIGF--SGAPWTLMSYMIEGGGSKTMSKSKHWLY-KYPEESKKLLEILTN 197 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~~~--~~gPf~~a~~l~~G~~~~g~e~~~~~l~-~~Pe~v~~lle~i~d 197 (281)
+..++.++.+++.+++++||++. +.++=+....+.-| .. .-.+...++ ..|..+.++.+.+.+
T Consensus 227 ~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aG--A~-~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 227 PLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAG--AS-AVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcC--CC-ceeEchhhhhcCchHHHHHHHHHHh
Confidence 45577788888888667899864 56777777777644 22 334555555 699999888776654
No 225
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.06 E-value=2.4e+02 Score=24.47 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCCccEEEecCcH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
+.++...+..++++|++..++++
T Consensus 54 ~l~~~~~~~~~~~~~vi~gv~~~ 76 (281)
T cd00408 54 EVIEAVVEAVAGRVPVIAGVGAN 76 (281)
T ss_pred HHHHHHHHHhCCCCeEEEecCCc
Confidence 33444555556678888877654
No 226
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.05 E-value=1.2e+02 Score=26.75 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNP 277 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~ 277 (281)
++-++..+++|+|+|. .|. +||+.-++ +++.++... ..+.+=..|.++ .+..+...|.+
T Consensus 192 leea~~A~~~GaDiI~-LDn----~~~e~l~~--------~v~~~~~~~------~~~~ieAsGgIt~~ni~~ya~~GvD 252 (273)
T PRK05848 192 LEEAKNAMNAGADIVM-CDN----MSVEEIKE--------VVAYRNANY------PHVLLEASGNITLENINAYAKSGVD 252 (273)
T ss_pred HHHHHHHHHcCCCEEE-ECC----CCHHHHHH--------HHHHhhccC------CCeEEEEECCCCHHHHHHHHHcCCC
Confidence 3456666789999874 332 56766544 444444321 246788889886 36677777877
Q ss_pred CCCC
Q psy15359 278 MLST 281 (281)
Q Consensus 278 ~~~~ 281 (281)
.+|+
T Consensus 253 ~Isv 256 (273)
T PRK05848 253 AISS 256 (273)
T ss_pred EEEe
Confidence 7663
No 227
>PRK08444 hypothetical protein; Provisional
Probab=20.94 E-value=3.4e+02 Score=24.87 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhcc
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~ 250 (281)
-.|.+++.++...+.|+.-+.+......... ..|+.++++.+|+..|+
T Consensus 81 s~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~--------~e~y~e~ir~Ik~~~p~ 128 (353)
T PRK08444 81 SHEEILEIVKNSVKRGIKEVHIVSAHNPNYG--------YEWYLEIFKKIKEAYPN 128 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCCCC--------HHHHHHHHHHHHHHCCC
Confidence 3455666777778999998877633222222 23677899999987443
No 228
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=20.81 E-value=2.9e+02 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
.+.++.++++|+.++-++.+++ .+++.+. ++++.+++. | +++++|+.
T Consensus 203 ~~~L~e~i~aGA~gfKi~~d~g--~t~~~l~--------~aL~~A~~~--g----v~V~iHa~ 249 (568)
T PRK13207 203 PEALEEQIEAGAIGLKLHEDWG--ATPAAID--------NCLSVADEY--D----VQVAIHTD 249 (568)
T ss_pred HHHHHHHHHcCCCEEeecCCCC--CCHHHHH--------HHHHHHHHh--C----CEEEEeCC
Confidence 4556677899999988776664 4665443 466777766 5 78888873
No 229
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.76 E-value=2.6e+02 Score=24.61 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHcCCCccEEEecC
Q psy15359 138 ITLTRHKLEGKVPLIGFSG 156 (281)
Q Consensus 138 ~~~l~~~~~~~~~i~~~~~ 156 (281)
++...+..++++||++.+.
T Consensus 59 ~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 59 VRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred HHHHHHHhCCCCCEEEecC
Confidence 3334444556788887764
No 230
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=20.74 E-value=2.1e+02 Score=25.63 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHhhCHHHHHHHHHHHHHH-------------------HHHHHHHHHHhCCCEEEEec
Q psy15359 179 HWLYKYPEESKKLLEILTNV-------------------IVDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d~-------------------~i~~~~~~~e~G~d~i~i~d 218 (281)
..|+++|+.+.++++.+.+. .+++++.+.++|++.|.+..
T Consensus 101 a~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 101 AALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp GGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred hhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 45678999999999988753 67888888999999987765
No 231
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.70 E-value=2e+02 Score=25.07 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
+.++...++|+..+ ....+-..=||..|+.+..--++.+.+..++. | ++++-
T Consensus 33 ~~a~~~~~~g~~~~-r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~--G----l~~~T 84 (250)
T PRK13397 33 LAASSAKKLGYNYF-RGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF--G----LLSVS 84 (250)
T ss_pred HHHHHHHHcCCCEE-EecccCCCCCCcccCCCCHHHHHHHHHHHHHc--C----CCEEE
Confidence 34444678898865 44444445678888888888888888888876 6 77554
No 232
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=20.54 E-value=2.5e+02 Score=23.65 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=26.8
Q ss_pred HHhCCCEEEEecCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 207 AKAGAQLLQLFESNA--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 207 ~e~G~d~i~i~d~~~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
.+.|..+|-+.-... ...++..+ +++++.+.+. | +++++|+
T Consensus 95 ~~~g~~Gv~l~~~~~~~~~~~~~~~--------~~~~~~~~~~--~----~pv~~H~ 137 (273)
T PF04909_consen 95 QELGFRGVKLHPDLGGFDPDDPRLD--------DPIFEAAEEL--G----LPVLIHT 137 (273)
T ss_dssp HTTTESEEEEESSETTCCTTSGHCH--------HHHHHHHHHH--T-----EEEEEE
T ss_pred cccceeeeEecCCCCccccccHHHH--------HHHHHHHHhh--c----cceeeec
Confidence 477877776655433 23555544 7888888887 6 8888884
No 233
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=20.54 E-value=3.6e+02 Score=24.40 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHH------H----HHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNA----EYLDLD------L----FKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~----~~iSp~------~----f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++...++|.|+|-+....+ .+|||- . ++.- .-+..+|++++++..|. +.++
T Consensus 144 I~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR-~Rf~~Eii~aIr~~vg~---d~~v 219 (341)
T PF00724_consen 144 IEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENR-ARFLLEIIEAIREAVGP---DFPV 219 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHH-HHHHHHHHHHHHHHHTG---GGEE
T ss_pred HHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchh-hHHHHHHHHHHHHHhcC---CceE
Confidence 455666777788888899999998865433 134442 1 2222 34778889988887532 2567
Q ss_pred EEEecCCcc
Q psy15359 258 TIFAKGAPK 266 (281)
Q Consensus 258 ilH~cG~~~ 266 (281)
.+-+++...
T Consensus 220 ~~Rls~~~~ 228 (341)
T PF00724_consen 220 GVRLSPDDF 228 (341)
T ss_dssp EEEEETTCS
T ss_pred EEEEeeecc
Confidence 887777643
No 234
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.52 E-value=6.4e+02 Score=22.76 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCccEE-EecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHH-----------
Q psy15359 132 NYVFEAITLTRHKLEGKVPLI-GFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVI----------- 199 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~-~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~----------- 199 (281)
|..+....++.++.| +-++ -+++.|-.-...-- . =..|+++|+.+.++++.+.+..
T Consensus 78 p~~l~eaA~~~~~~g--~~~IdlN~GCP~~~V~~~g-------~---Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 78 PELLAEAAKIAEELG--ADIIDLNCGCPSPKVVKGG-------A---GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred HHHHHHHHHHHHhcC--CCEEeeeCCCChHHhcCCC-------c---chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 344433333445544 2233 46777765543221 2 1678899999999999998887
Q ss_pred ---------HHHHHHHHHhCCCEEEEec
Q psy15359 200 ---------VDYLVGQAKAGAQLLQLFE 218 (281)
Q Consensus 200 ---------i~~~~~~~e~G~d~i~i~d 218 (281)
.++++.+.++|++.+.+..
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHg 173 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHG 173 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEec
Confidence 2466667789999987765
No 235
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.50 E-value=4.3e+02 Score=22.86 Aligned_cols=65 Identities=6% Similarity=0.008 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcC
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNY 274 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~ 274 (281)
-++..+++++.+.++|++.|-+.-+. .||+.| +.++.+.+..++ .++.-++-++...++...+.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~~~~~---------~~~~~l~~~~~~----~~~~~l~r~~~~~v~~a~~~ 81 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPA---ASPGDF---------EAVKRIAREVLN----AEICGLARAVKKDIDAAAEA 81 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHH---------HHHHHHHHhCCC----CEEEEEccCCHhhHHHHHHh
Confidence 46778889999999999998664222 477765 334444443223 45555553444444444444
Q ss_pred C
Q psy15359 275 S 275 (281)
Q Consensus 275 ~ 275 (281)
+
T Consensus 82 ~ 82 (268)
T cd07940 82 L 82 (268)
T ss_pred C
Confidence 3
No 236
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=20.42 E-value=6.2e+02 Score=22.59 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCCccEEEe--cCcHHHHHHHHHhCCCCCchHHHHHHHhh-CHHHHHHHHHHHHHHHH
Q psy15359 132 NYVFEAITLTRHKLEGKVPLIGF--SGAPWTLMSYMIEGGGSKTMSKSKHWLYK-YPEESKKLLEILTNVIV 200 (281)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~i~~~--~~gPf~~a~~l~~G~~~~g~e~~~~~l~~-~Pe~v~~lle~i~d~~i 200 (281)
+..++.+..+++.++.++||++. +...-..+..++-|- ..-++...++. .|+.+.++.+-+.+.+-
T Consensus 225 p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA---~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 225 PTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGA---SMVQVGTALHKEGPAVFERLTKELKAIMA 293 (310)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCC---CHHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 56677888888888767898864 557777777777542 24455565554 79988888877765443
No 237
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.36 E-value=2.5e+02 Score=27.02 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcC
Q psy15359 195 LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNY 274 (281)
Q Consensus 195 i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~ 274 (281)
+.+...+.++.++++|+|.| +.|...+ -| -+..++++.+|+..++ +++|.-.|.+.....++.+.
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i-~~D~a~g-~~---------~~~~~~i~~i~~~~~~----~~vi~g~~~t~~~~~~l~~~ 286 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVL-VIDTAHG-HQ---------VKMISAIKAVRALDLG----VPIVAGNVVSAEGVRDLLEA 286 (475)
T ss_pred eCccHHHHHHHHHHhCCCEE-EEeCCCC-Cc---------HHHHHHHHHHHHHCCC----CeEEEeccCCHHHHHHHHHh
Confidence 34566788999999999987 4464432 12 3556778888876555 67766444444455566666
Q ss_pred CCCC
Q psy15359 275 SNPM 278 (281)
Q Consensus 275 ~~~~ 278 (281)
|.+-
T Consensus 287 G~d~ 290 (475)
T TIGR01303 287 GANI 290 (475)
T ss_pred CCCE
Confidence 6553
No 238
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.26 E-value=3.2e+02 Score=23.98 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=11.8
Q ss_pred HHHHHHHcCCCccEEEecCc
Q psy15359 138 ITLTRHKLEGKVPLIGFSGA 157 (281)
Q Consensus 138 ~~~l~~~~~~~~~i~~~~~g 157 (281)
++...+..++++|+++.+.+
T Consensus 60 ~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 60 AEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred HHHHHHHhCCCCeEEeccCC
Confidence 33344444567888877654
No 239
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.15 E-value=2.7e+02 Score=24.09 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=40.0
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 183 KYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 183 ~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
-||++. +..-+.+++++++|.|+|.+..+.+ ++-+. ..++++.+++.+ + +|++++--
T Consensus 22 iDP~k~--------~~~~ei~~~~~~~GTDaImIGGS~g--vt~~~--------~~~~v~~ik~~~-~----lPvilfP~ 78 (240)
T COG1646 22 IDPDKT--------EEADEIAEAAAEAGTDAIMIGGSDG--VTEEN--------VDNVVEAIKERT-D----LPVILFPG 78 (240)
T ss_pred eCcccc--------cccHHHHHHHHHcCCCEEEECCccc--ccHHH--------HHHHHHHHHhhc-C----CCEEEecC
Confidence 367765 3344556777899999997776554 33332 356778888654 5 89999875
Q ss_pred CCc
Q psy15359 263 GAP 265 (281)
Q Consensus 263 G~~ 265 (281)
...
T Consensus 79 ~~~ 81 (240)
T COG1646 79 SPS 81 (240)
T ss_pred Chh
Confidence 543
No 240
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.06 E-value=2.7e+02 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=11.9
Q ss_pred HHHHHHcCCCccEEEecCc
Q psy15359 139 TLTRHKLEGKVPLIGFSGA 157 (281)
Q Consensus 139 ~~l~~~~~~~~~i~~~~~g 157 (281)
+...+..++++||+..+++
T Consensus 65 ~~~~~~~~g~~pvi~gv~~ 83 (296)
T TIGR03249 65 EIAVSTAKGKVPVYTGVGG 83 (296)
T ss_pred HHHHHHhCCCCcEEEecCc
Confidence 3344555667888877653
No 241
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=20.05 E-value=1.6e+02 Score=25.21 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeee
Q psy15359 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASII 83 (281)
Q Consensus 11 ~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~ 83 (281)
|||.+.+|+..+|+...+|.+-+ +- -.+||.. .-+.++....||++.+.+
T Consensus 1 ~~~~r~~ri~~~l~~r~~~l~vv-Ld---------------------~V~~p~N-lGAIiRta~AfGv~~V~~ 50 (229)
T PRK11081 1 MNPERYARICEMLARRQPDLTVC-ME---------------------QVHKPHN-VSAIIRTADAVGVHEVHA 50 (229)
T ss_pred CCchhHHhHHHHHhcCCCCeEEE-Ee---------------------CCCCcch-HHHHHHHHHHhCCCeEEE
Confidence 78999999999999887773322 11 0244442 345678888999987654
No 242
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=20.01 E-value=2.6e+02 Score=24.47 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEec----CCCCCCCHHHHHHHhHHHHHHHHHHHHHh
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFE----SNAEYLDLDLFKEFALPYINTINEKVKAQ 247 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~Py~k~l~~~i~~~ 247 (281)
++.+.|..++-++.+.+.|+|+|.+-+ |.....+|+. ...+-.+...+++.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~et-----vaaM~~i~~~v~~~ 78 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPET-----VAAMARIAREVRRE 78 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHH-----HHHHHHHHHHHHHh
Confidence 455666777888899999999986654 2222255554 34566777777765
Done!