Query psy15359
Match_columns 281
No_of_seqs 161 out of 1161
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:52:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4exq_A UPD, URO-D, uroporphyri 100.0 4.4E-58 1.5E-62 419.1 19.9 269 9-280 4-278 (368)
2 1r3s_A URO-D, uroporphyrinogen 100.0 1.3E-55 4.4E-60 403.6 24.8 268 8-280 8-281 (367)
3 3cyv_A URO-D, UPD, uroporphyri 100.0 3.3E-53 1.1E-57 386.0 22.5 265 11-280 1-268 (354)
4 2eja_A URO-D, UPD, uroporphyri 100.0 3.4E-52 1.2E-56 377.1 23.7 256 11-280 1-257 (338)
5 2inf_A URO-D, UPD, uroporphyri 100.0 4.9E-52 1.7E-56 378.9 23.8 262 9-280 9-270 (359)
6 1j93_A UROD, uroporphyrinogen 100.0 8E-52 2.7E-56 376.7 24.4 269 4-280 2-272 (353)
7 4ay7_A Methylcobalamin\: coenz 100.0 2.7E-49 9.1E-54 359.4 22.8 249 10-280 12-267 (348)
8 1u1j_A 5-methyltetrahydroptero 98.3 8.2E-07 2.8E-11 87.6 5.9 123 134-280 539-669 (765)
9 2nq5_A 5-methyltetrahydroptero 98.2 6.1E-07 2.1E-11 88.3 4.2 123 134-280 524-654 (755)
10 1ypx_A Putative vitamin-B12 in 98.1 3E-06 1E-10 77.0 6.0 126 134-279 116-269 (375)
11 2nq5_A 5-methyltetrahydroptero 97.8 6.1E-05 2.1E-09 74.1 8.8 118 134-279 137-256 (755)
12 1u1j_A 5-methyltetrahydroptero 97.2 0.00033 1.1E-08 69.1 6.0 122 133-279 136-264 (765)
13 3rpd_A Methionine synthase (B1 97.2 0.00038 1.3E-08 62.6 5.9 100 136-262 127-226 (357)
14 1t7l_A 5-methyltetrahydroptero 96.7 0.0012 4E-08 64.6 4.8 120 135-279 544-671 (766)
15 3ppg_A 5-methyltetrahydroptero 95.0 0.02 6.9E-07 56.2 4.8 115 136-275 572-694 (789)
16 4djd_D C/Fe-SP, corrinoid/iron 84.1 1 3.5E-05 39.5 4.5 69 185-266 68-141 (323)
17 2cw6_A Hydroxymethylglutaryl-C 82.5 4.7 0.00016 34.6 8.2 57 197-266 156-212 (298)
18 2ftp_A Hydroxymethylglutaryl-C 81.5 3.9 0.00013 35.3 7.3 56 198-266 160-215 (302)
19 3ble_A Citramalate synthase fr 80.7 5.3 0.00018 35.1 7.9 57 197-266 169-225 (337)
20 1ydn_A Hydroxymethylglutaryl-C 79.9 5.8 0.0002 34.0 7.8 53 200-265 158-210 (295)
21 3ewb_X 2-isopropylmalate synth 77.5 9.2 0.00031 32.8 8.3 60 197-266 150-209 (293)
22 1ydo_A HMG-COA lyase; TIM-barr 76.5 4.9 0.00017 34.8 6.3 56 198-266 158-213 (307)
23 3cpr_A Dihydrodipicolinate syn 76.5 7.9 0.00027 33.4 7.6 56 200-266 40-97 (304)
24 2ojp_A DHDPS, dihydrodipicolin 76.3 7.6 0.00026 33.2 7.5 58 198-266 23-82 (292)
25 3flu_A DHDPS, dihydrodipicolin 75.9 7.9 0.00027 33.3 7.4 57 199-266 30-88 (297)
26 3tak_A DHDPS, dihydrodipicolin 75.8 7.6 0.00026 33.2 7.3 57 199-266 24-82 (291)
27 2wkj_A N-acetylneuraminate lya 75.2 8.6 0.00029 33.1 7.5 57 199-266 34-92 (303)
28 1rqb_A Transcarboxylase 5S sub 75.1 8.4 0.00029 36.2 7.8 57 197-266 175-232 (539)
29 1xky_A Dihydrodipicolinate syn 74.9 9.1 0.00031 32.9 7.6 57 199-266 35-93 (301)
30 3bg3_A Pyruvate carboxylase, m 74.7 7.9 0.00027 37.7 7.8 57 197-266 261-317 (718)
31 2yxg_A DHDPS, dihydrodipicolin 74.3 9.1 0.00031 32.7 7.4 58 198-266 22-81 (289)
32 1ur4_A Galactanase; hydrolase, 73.5 18 0.00061 32.5 9.4 71 190-265 134-207 (399)
33 3a5f_A Dihydrodipicolinate syn 73.3 8.4 0.00029 33.0 6.9 58 198-266 23-82 (291)
34 1nvm_A HOA, 4-hydroxy-2-oxoval 73.1 10 0.00035 33.2 7.6 57 197-266 149-206 (345)
35 2r8w_A AGR_C_1641P; APC7498, d 72.9 10 0.00035 33.1 7.5 56 200-266 58-115 (332)
36 2ehh_A DHDPS, dihydrodipicolin 72.5 8.2 0.00028 33.1 6.7 58 198-266 22-81 (294)
37 3m5v_A DHDPS, dihydrodipicolin 72.4 8.7 0.0003 33.0 6.8 58 199-266 30-89 (301)
38 2nx9_A Oxaloacetate decarboxyl 72.3 10 0.00035 34.9 7.6 55 198-266 159-213 (464)
39 3rmj_A 2-isopropylmalate synth 72.1 14 0.00049 32.8 8.3 60 197-266 157-216 (370)
40 3l21_A DHDPS, dihydrodipicolin 72.1 11 0.00039 32.4 7.5 57 199-266 38-96 (304)
41 2v9d_A YAGE; dihydrodipicolini 71.9 10 0.00035 33.3 7.3 56 200-266 55-112 (343)
42 3qze_A DHDPS, dihydrodipicolin 71.8 9.1 0.00031 33.2 6.8 55 201-266 48-104 (314)
43 1f6k_A N-acetylneuraminate lya 71.3 8.8 0.0003 32.9 6.6 57 199-266 26-85 (293)
44 3flu_A DHDPS, dihydrodipicolin 70.9 48 0.0017 28.2 11.8 70 135-244 63-132 (297)
45 3b4u_A Dihydrodipicolinate syn 70.6 8 0.00027 33.1 6.2 58 198-266 25-84 (294)
46 1o5k_A DHDPS, dihydrodipicolin 70.1 11 0.00037 32.5 7.0 57 199-266 35-93 (306)
47 2rfg_A Dihydrodipicolinate syn 70.0 8.6 0.00029 33.0 6.2 58 198-266 22-81 (297)
48 3fkr_A L-2-keto-3-deoxyarabona 70.0 9.1 0.00031 33.1 6.4 57 199-266 31-89 (309)
49 3si9_A DHDPS, dihydrodipicolin 68.8 56 0.0019 28.1 11.4 70 135-244 78-147 (315)
50 4dpp_A DHDPS 2, dihydrodipicol 68.7 14 0.00047 32.8 7.3 55 201-266 84-140 (360)
51 3daq_A DHDPS, dihydrodipicolin 68.7 12 0.00041 32.0 6.9 58 198-266 24-83 (292)
52 2vc6_A MOSA, dihydrodipicolina 68.5 8.5 0.00029 32.9 5.9 58 198-266 22-81 (292)
53 3qze_A DHDPS, dihydrodipicolin 67.7 59 0.002 27.9 11.8 53 197-262 105-157 (314)
54 3si9_A DHDPS, dihydrodipicolin 67.6 12 0.00042 32.3 6.8 56 200-266 46-103 (315)
55 3qfe_A Putative dihydrodipicol 67.3 10 0.00034 33.0 6.1 57 199-266 34-92 (318)
56 3tak_A DHDPS, dihydrodipicolin 67.0 58 0.002 27.6 11.8 78 135-261 57-134 (291)
57 3eeg_A 2-isopropylmalate synth 66.6 18 0.0006 31.5 7.6 60 197-266 151-210 (325)
58 3na8_A Putative dihydrodipicol 66.3 11 0.00038 32.6 6.2 56 200-266 48-105 (315)
59 2hmc_A AGR_L_411P, dihydrodipi 65.6 13 0.00043 32.7 6.5 53 200-266 50-104 (344)
60 3na8_A Putative dihydrodipicol 64.8 68 0.0023 27.6 11.3 69 135-243 80-148 (315)
61 3h5d_A DHDPS, dihydrodipicolin 64.1 9.4 0.00032 33.0 5.3 57 199-266 30-88 (311)
62 3daq_A DHDPS, dihydrodipicolin 62.3 71 0.0024 27.0 12.6 69 136-244 59-127 (292)
63 3dz1_A Dihydrodipicolinate syn 62.0 15 0.00052 31.7 6.2 56 199-266 31-88 (313)
64 3ivs_A Homocitrate synthase, m 61.8 27 0.00094 31.6 8.1 54 199-266 182-235 (423)
65 2r8w_A AGR_C_1641P; APC7498, d 61.2 73 0.0025 27.6 10.6 24 135-158 90-113 (332)
66 3m5v_A DHDPS, dihydrodipicolin 59.9 81 0.0028 26.8 11.6 70 135-244 63-133 (301)
67 3d0c_A Dihydrodipicolinate syn 58.4 14 0.00048 31.9 5.4 53 200-263 36-90 (314)
68 3s5o_A 4-hydroxy-2-oxoglutarat 58.1 9.1 0.00031 33.0 4.1 55 200-266 38-95 (307)
69 3eb2_A Putative dihydrodipicol 57.9 9.9 0.00034 32.7 4.3 57 199-266 27-85 (300)
70 1eye_A DHPS 1, dihydropteroate 56.3 35 0.0012 29.0 7.4 45 197-241 29-77 (280)
71 4hb7_A Dihydropteroate synthas 55.9 36 0.0012 28.8 7.3 44 197-240 30-77 (270)
72 3hbl_A Pyruvate carboxylase; T 55.3 34 0.0012 35.2 8.3 56 197-266 692-747 (1150)
73 3e96_A Dihydrodipicolinate syn 53.9 15 0.00052 31.7 4.9 53 200-263 36-90 (316)
74 1tx2_A DHPS, dihydropteroate s 53.7 58 0.002 27.9 8.5 46 197-242 63-112 (297)
75 1aj0_A DHPS, dihydropteroate s 52.9 59 0.002 27.6 8.3 46 197-242 38-87 (282)
76 3h5d_A DHDPS, dihydrodipicolin 52.0 1.1E+02 0.0038 26.1 11.0 78 135-261 63-141 (311)
77 3l21_A DHDPS, dihydrodipicolin 48.8 1.2E+02 0.0042 25.7 9.8 77 136-261 72-148 (304)
78 1fa2_A Beta-amylase; TIM barre 48.0 2.4 8.2E-05 38.9 -1.3 53 202-264 39-98 (498)
79 1wdp_A Beta-amylase; (beta/alp 47.7 2.6 8.9E-05 38.7 -1.1 53 202-264 38-97 (495)
80 2xfr_A Beta-amylase; hydrolase 46.6 2.8 9.5E-05 38.8 -1.1 53 202-264 36-95 (535)
81 2v9d_A YAGE; dihydrodipicolini 46.3 1.4E+02 0.0048 25.9 9.9 24 135-158 87-110 (343)
82 3ayv_A Putative uncharacterize 45.1 1.2E+02 0.004 24.3 8.9 71 184-264 67-140 (254)
83 3e96_A Dihydrodipicolinate syn 44.8 1E+02 0.0035 26.4 8.7 54 199-265 95-148 (316)
84 2qf7_A Pyruvate carboxylase pr 44.8 49 0.0017 34.0 7.6 56 197-266 709-764 (1165)
85 2y5s_A DHPS, dihydropteroate s 43.8 54 0.0018 28.1 6.6 45 197-241 46-94 (294)
86 3l23_A Sugar phosphate isomera 43.3 1.4E+02 0.0049 24.8 10.1 57 199-263 110-168 (303)
87 3kws_A Putative sugar isomeras 43.0 1.4E+02 0.0047 24.5 9.8 70 184-263 95-168 (287)
88 3zwt_A Dihydroorotate dehydrog 42.3 80 0.0027 27.8 7.8 79 182-269 195-311 (367)
89 3eoo_A Methylisocitrate lyase; 42.0 40 0.0014 28.9 5.5 35 196-234 170-204 (298)
90 1fob_A Beta-1,4-galactanase; B 41.7 58 0.002 28.1 6.7 71 188-263 103-182 (334)
91 3d0c_A Dihydrodipicolinate syn 40.7 73 0.0025 27.3 7.1 49 200-261 96-144 (314)
92 1w3i_A EDA, 2-keto-3-deoxy glu 40.2 46 0.0016 28.3 5.7 55 198-266 21-77 (293)
93 1f6k_A N-acetylneuraminate lya 39.9 1.1E+02 0.0037 25.9 8.0 44 197-244 86-129 (293)
94 2nuw_A 2-keto-3-deoxygluconate 39.9 45 0.0015 28.2 5.6 55 198-266 21-77 (288)
95 3eb2_A Putative dihydrodipicol 39.8 99 0.0034 26.3 7.8 44 197-244 86-129 (300)
96 3fa4_A 2,3-dimethylmalate lyas 39.3 38 0.0013 29.1 5.0 35 196-234 169-203 (302)
97 2r91_A 2-keto-3-deoxy-(6-phosp 38.8 48 0.0016 28.0 5.6 55 198-266 20-76 (286)
98 1xky_A Dihydrodipicolinate syn 38.5 1.8E+02 0.0062 24.6 9.9 23 136-158 69-91 (301)
99 2ztj_A Homocitrate synthase; ( 38.3 86 0.003 27.7 7.4 55 198-266 146-201 (382)
100 4dpp_A DHDPS 2, dihydrodipicol 38.0 2.1E+02 0.0071 25.1 9.7 32 196-227 140-171 (360)
101 3tr9_A Dihydropteroate synthas 38.0 65 0.0022 27.9 6.2 45 197-241 49-101 (314)
102 3lye_A Oxaloacetate acetyl hyd 37.3 54 0.0019 28.2 5.6 35 196-234 177-211 (307)
103 4gbu_A NADPH dehydrogenase 1; 37.0 66 0.0022 28.7 6.4 67 192-263 167-247 (400)
104 1vli_A Spore coat polysacchari 36.7 21 0.00072 31.9 3.0 72 201-279 48-138 (385)
105 3r2g_A Inosine 5'-monophosphat 36.2 91 0.0031 27.5 7.0 66 198-278 100-165 (361)
106 2vp8_A Dihydropteroate synthas 35.1 88 0.003 27.1 6.6 46 197-242 65-113 (318)
107 2yxg_A DHDPS, dihydrodipicolin 34.0 1.5E+02 0.0051 24.9 7.9 68 136-243 57-124 (289)
108 3obe_A Sugar phosphate isomera 33.8 2.1E+02 0.0071 23.9 9.3 59 198-264 115-173 (305)
109 3gnh_A L-lysine, L-arginine ca 33.4 31 0.0011 29.9 3.6 62 200-276 170-241 (403)
110 3ngf_A AP endonuclease, family 33.3 1.9E+02 0.0064 23.4 8.4 68 184-261 84-151 (269)
111 1f6y_A 5-methyltetrahydrofolat 33.0 67 0.0023 26.9 5.4 43 185-228 12-55 (262)
112 2vef_A Dihydropteroate synthas 32.9 60 0.0021 28.0 5.3 46 197-242 33-82 (314)
113 3b4u_A Dihydrodipicolinate syn 32.2 1.9E+02 0.0067 24.2 8.4 70 135-244 59-129 (294)
114 3fst_A 5,10-methylenetetrahydr 32.1 2.4E+02 0.0081 24.0 9.0 76 136-218 193-276 (304)
115 4a3u_A NCR, NADH\:flavin oxido 32.1 88 0.003 27.3 6.3 67 192-263 147-227 (358)
116 3cpr_A Dihydrodipicolinate syn 31.8 1.7E+02 0.0057 24.9 7.9 44 197-244 98-141 (304)
117 1i60_A IOLI protein; beta barr 31.5 2E+02 0.0069 23.0 10.4 63 197-265 84-147 (278)
118 3apt_A Methylenetetrahydrofola 31.1 1.8E+02 0.0061 24.8 8.0 78 137-218 191-273 (310)
119 3fkr_A L-2-keto-3-deoxyarabona 30.6 2.5E+02 0.0085 23.8 9.4 23 136-158 65-87 (309)
120 3dz1_A Dihydrodipicolinate syn 30.4 1.6E+02 0.0056 25.0 7.7 44 197-245 89-132 (313)
121 1pv8_A Delta-aminolevulinic ac 30.2 2.2E+02 0.0075 24.6 8.1 69 133-218 100-169 (330)
122 4fo4_A Inosine 5'-monophosphat 30.2 81 0.0028 27.8 5.7 63 200-277 110-172 (366)
123 2hbv_A 2-amino-3-carboxymucona 29.8 1.2E+02 0.0042 25.6 6.9 47 203-263 133-180 (334)
124 4ab4_A Xenobiotic reductase B; 29.1 2.4E+02 0.0082 24.7 8.6 68 192-264 148-229 (362)
125 2vc6_A MOSA, dihydrodipicolina 28.7 2.4E+02 0.0081 23.6 8.3 29 199-227 84-112 (292)
126 3b0p_A TRNA-dihydrouridine syn 28.5 1.1E+02 0.0039 26.5 6.4 115 134-267 72-208 (350)
127 3gka_A N-ethylmaleimide reduct 28.2 2.5E+02 0.0086 24.5 8.6 68 192-264 156-237 (361)
128 1k77_A EC1530, hypothetical pr 28.0 2.3E+02 0.0077 22.5 8.6 61 197-263 85-146 (260)
129 3mcm_A 2-amino-4-hydroxy-6-hyd 27.7 1.1E+02 0.0037 27.8 6.2 45 198-242 213-261 (442)
130 2h9a_B CO dehydrogenase/acetyl 27.2 1.8E+02 0.006 25.0 7.2 53 197-262 74-130 (310)
131 3vk5_A MOEO5; TIM barrel, tran 27.2 2.3E+02 0.008 24.0 7.8 59 196-268 52-113 (286)
132 3hkx_A Amidase; alpha-beta-BET 26.9 2E+02 0.007 23.7 7.6 50 198-247 41-95 (283)
133 3tva_A Xylose isomerase domain 26.9 2.5E+02 0.0087 22.7 8.6 61 197-265 102-163 (290)
134 3ih1_A Methylisocitrate lyase; 26.7 96 0.0033 26.6 5.4 33 196-232 174-206 (305)
135 3vni_A Xylose isomerase domain 26.4 2.6E+02 0.0089 22.7 9.7 70 184-263 79-154 (294)
136 3khj_A Inosine-5-monophosphate 26.0 2.2E+02 0.0074 24.9 7.8 63 200-278 107-169 (361)
137 3l5l_A Xenobiotic reductase A; 26.0 1.1E+02 0.0039 26.6 6.0 59 192-259 153-230 (363)
138 1thf_D HISF protein; thermophI 25.7 1.9E+02 0.0064 23.2 7.0 63 200-277 33-98 (253)
139 1x7f_A Outer surface protein; 25.7 1E+02 0.0035 27.5 5.5 59 197-266 41-99 (385)
140 2r8c_A Putative amidohydrolase 25.2 63 0.0022 28.3 4.2 61 201-276 179-249 (426)
141 2wqp_A Polysialic acid capsule 25.0 28 0.00096 30.7 1.7 72 201-279 39-128 (349)
142 2p0o_A Hypothetical protein DU 24.9 1.4E+02 0.0049 26.3 6.3 57 198-265 18-74 (372)
143 1jcn_A Inosine monophosphate d 24.8 1.1E+02 0.0037 28.1 5.8 63 200-277 257-319 (514)
144 4i8i_A Hypothetical protein; 5 24.1 1.4E+02 0.0048 25.0 5.9 48 207-262 90-138 (271)
145 2xn2_A Alpha-galactosidase; hy 24.0 89 0.003 30.3 5.2 52 201-263 354-418 (732)
146 3qfe_A Putative dihydrodipicol 24.0 3.3E+02 0.011 23.1 9.0 24 135-158 67-90 (318)
147 2i5u_A DNAD domain protein; st 23.9 1.2E+02 0.0042 20.2 4.6 26 182-207 39-67 (83)
148 3a5v_A Alpha-galactosidase; be 23.9 77 0.0026 28.2 4.5 62 184-262 24-95 (397)
149 2q02_A Putative cytoplasmic pr 23.8 1.6E+02 0.0054 23.7 6.2 56 199-263 87-142 (272)
150 3hgj_A Chromate reductase; TIM 23.7 1.9E+02 0.0064 25.0 6.9 64 192-264 147-229 (349)
151 1h5y_A HISF; histidine biosynt 23.5 2E+02 0.0068 22.8 6.7 50 198-260 34-83 (253)
152 3feq_A Putative amidohydrolase 23.5 68 0.0023 27.9 4.0 60 201-275 176-245 (423)
153 3nvt_A 3-deoxy-D-arabino-heptu 23.3 66 0.0023 28.6 3.9 56 197-259 156-211 (385)
154 1r30_A Biotin synthase; SAM ra 23.2 1.8E+02 0.0061 25.1 6.7 61 206-279 111-173 (369)
155 2yci_X 5-methyltetrahydrofolat 23.1 96 0.0033 26.0 4.7 24 197-220 34-57 (271)
156 1hjs_A Beta-1,4-galactanase; 4 22.9 1.7E+02 0.0058 25.2 6.4 69 190-263 104-181 (332)
157 3vnd_A TSA, tryptophan synthas 22.0 2.8E+02 0.0096 23.1 7.4 24 199-222 34-57 (267)
158 2p10_A MLL9387 protein; putati 21.6 2.4E+02 0.0083 23.9 6.8 48 199-250 172-227 (286)
159 2pcq_A Putative dihydrodipicol 21.6 2.3E+02 0.0077 23.7 6.8 43 196-242 74-117 (283)
160 3k13_A 5-methyltetrahydrofolat 21.2 1.4E+02 0.0046 25.6 5.3 41 197-238 37-77 (300)
161 4avf_A Inosine-5'-monophosphat 20.7 1.5E+02 0.0052 27.1 5.9 65 198-277 229-293 (490)
162 1ass_A Thermosome; chaperonin, 20.7 1.4E+02 0.0048 22.7 4.8 38 179-216 41-78 (159)
163 1q7z_A 5-methyltetrahydrofolat 20.5 1.7E+02 0.0059 27.3 6.3 47 185-232 327-375 (566)
164 1uas_A Alpha-galactosidase; TI 20.5 1E+02 0.0034 26.9 4.5 45 207-262 41-95 (362)
165 3qc0_A Sugar isomerase; TIM ba 20.2 3.3E+02 0.011 21.6 9.9 69 184-262 74-144 (275)
No 1
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=4.4e-58 Score=419.15 Aligned_cols=269 Identities=37% Similarity=0.658 Sum_probs=249.5
Q ss_pred cCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccc
Q psy15359 9 MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDI 87 (281)
Q Consensus 9 ~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~ 87 (281)
..|+|+|+||+++|++||++||+|||+|.|||+|+++|+.++++. ++.++|.||++++|++++++++|++|++++++|+
T Consensus 4 ~~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi 83 (368)
T 4exq_A 4 SMAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDI 83 (368)
T ss_dssp CSSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred ccCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 358999999999999999999999999999999999999888887 9999999999999999999999999999999999
Q ss_pred ccchhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCC-----CccEEEecCcHHHHH
Q psy15359 88 LVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEG-----KVPLIGFSGAPWTLM 162 (281)
Q Consensus 88 ~~~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~-----~~~i~~~~~gPf~~a 162 (281)
.++++|||+++.|+++.+|++.+||++.+|+++|+. ++++++++.++++++++++++++ ++|++++++||||++
T Consensus 84 ~~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~-~~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla 162 (368)
T 4exq_A 84 LTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAV-PDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLA 162 (368)
T ss_dssp THHHHHTTTCEEC----CCEESSCCCSHHHHHTCCC-CCHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHH
T ss_pred chhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccC-CChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHH
Confidence 999999999999999989998889999999999988 88877899999999999999998 899999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHH
Q psy15359 163 SYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 163 ~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+++++|+|++++++++++|+++||.+|++|+++++.+++|+++++++|+|+|+++|+|+++|||++|++|++||+|+|++
T Consensus 163 ~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~ 242 (368)
T 4exq_A 163 CYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVA 242 (368)
T ss_dssp HHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHH
T ss_pred HHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 243 KVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 243 ~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
.+++..+ |+++++++|+||+...++++.+++.+.++
T Consensus 243 ~l~~~~~--g~~~pvi~f~~g~~~~l~~l~~~g~d~i~ 278 (368)
T 4exq_A 243 QLKREHD--GARVPAIAFTKGGGLWLEDLAATGVDAVG 278 (368)
T ss_dssp TSCCEET--TEECCEEEEETTCGGGHHHHHTSSCSEEE
T ss_pred HHHHhcC--CCCCcEEEEcCCcHHHHHHHHHhCCCEEe
Confidence 9987532 01179999999998789999999988754
No 2
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=100.00 E-value=1.3e-55 Score=403.57 Aligned_cols=268 Identities=57% Similarity=0.957 Sum_probs=251.6
Q ss_pred ccCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccc
Q psy15359 8 KMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDI 87 (281)
Q Consensus 8 ~~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~ 87 (281)
.++||++|+||+++|++||++||||+|++.++|+|+++|+.++.+.++.++|+||+++++++++++++|++|++.+++|+
T Consensus 8 ~~~Mt~~~~er~~~a~~ge~~dr~Pvw~mrqagr~lpey~~~~~~~~~~e~~~~pe~~~e~~l~~~~~~~~D~~~~~~di 87 (367)
T 1r3s_A 8 PQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGI 87 (367)
T ss_dssp ---CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred hhhcCcchhHHHHHHHcCCCCCCCceehhhhcCcccHHHHHHhcCCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCC-CcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHH
Q psy15359 88 LVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPV-DVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMI 166 (281)
Q Consensus 88 ~~~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~-d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~ 166 (281)
.+++++||+++.+.++.+|.+.+|+++.+|+++++. + +++++++.+.++++.+++++++++|++++++||||++++++
T Consensus 88 ~~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~-~~~~~~~l~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~ 166 (367)
T 1r3s_A 88 LVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRD-PEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMV 166 (367)
T ss_dssp THHHHHTTCCCEEETTTEEECSSCCCSGGGGGGSCC-GGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHH
T ss_pred cccHHHcCCeEEeCCCCCCCcCCCCCCHHHHHhccC-CCCchhhhhHHHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHH
Confidence 999999999999998888988889999999999987 6 77788999999999999999889999999999999999999
Q ss_pred hCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHH-
Q psy15359 167 EGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVK- 245 (281)
Q Consensus 167 ~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~- 245 (281)
+|++++++++++++++++||.+|++|+++++.+++|+++++++|+|+|+++|+|+++|||++|++|++||+|+|++.++
T Consensus 167 egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~ 246 (367)
T 1r3s_A 167 EGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246 (367)
T ss_dssp HSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc----cCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 246 AQLK----QMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 246 ~~~~----~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
+.++ + +++++|+||+...++++.++|.+.++
T Consensus 247 ~~~~~g~~~----~p~i~~~~G~~~~l~~l~~~g~d~i~ 281 (367)
T 1r3s_A 247 RLREAGLAP----VPMIIFAKDGHFALEELAQAGYEVVG 281 (367)
T ss_dssp HHHHTTCCC----CCEEEEETTCGGGHHHHTTSSCSEEE
T ss_pred hhccccCCC----CCeEEEcCCcHHHHHHHHhcCCCEEE
Confidence 7643 4 89999999997789999999988664
No 3
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=100.00 E-value=3.3e-53 Score=385.99 Aligned_cols=265 Identities=42% Similarity=0.739 Sum_probs=246.1
Q ss_pred CCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccccc
Q psy15359 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 89 (281)
Q Consensus 11 ~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~ 89 (281)
|+++|+||+++|++||++||||++++.++|+|+++|+.++.+. ++.++|+||+++++++++++++|++|++.+++|+.+
T Consensus 1 ~~~~~~er~~~a~~g~~~dr~Pv~~mrqagr~~pey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~ 80 (354)
T 3cyv_A 1 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT 80 (354)
T ss_dssp --CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTH
T ss_pred CCCCchHHHHHHHcCCCCCCCCeeehhhhccccHHHHHHHhccCCHHHHHcCHHHHHHHHHHHHHHhCCCEEeecccccc
Confidence 4566799999999999999999999999999999999999888 899999999999999999999999999999999999
Q ss_pred chhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCC
Q psy15359 90 IPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGG 169 (281)
Q Consensus 90 ~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~ 169 (281)
++++||+++.+.++.+|++.+|+++.+|+++++. ++++++++.+.++++.+++++++++|++++++||||+++++++|+
T Consensus 81 ~~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~-~~~~~~~~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~ 159 (354)
T 3cyv_A 81 VPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPI-PDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGG 159 (354)
T ss_dssp HHHTTTSCEEECSSSCEEESSCCCSHHHHHTCCC-CCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSS
T ss_pred cHHHcCCeEEeCCCCCCccCCCCCCHHHHHhcCC-CChhhhHHHHHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCC
Confidence 9999999999998888988789999999999986 777789999999999999999888999999999999999999998
Q ss_pred CCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh-
Q psy15359 170 GSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL- 248 (281)
Q Consensus 170 ~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~- 248 (281)
+++++++++++|+++||.+|++|+++++.+++++++++++|+|+|+++|+|++.|||++|++|++||+|++++.+++..
T Consensus 160 ~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~ 239 (354)
T 3cyv_A 160 SSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLREND 239 (354)
T ss_dssp CCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEET
T ss_pred CCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred -ccCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 249 -KQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 249 -~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
++ +++++||||+...++++.+++.+.++
T Consensus 240 ~~~----~~ii~~~~g~~~~l~~l~~~g~d~i~ 268 (354)
T 3cyv_A 240 GRR----VPVTLFTKGGGQWLEAMAETGCDALG 268 (354)
T ss_dssp TEE----CCEEEECTTTTTTHHHHHTTSCSEEE
T ss_pred CCC----CCEEEECCCHHHHHHHHHhcCCCEEE
Confidence 24 78777777776689999999988664
No 4
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=3.4e-52 Score=377.09 Aligned_cols=256 Identities=40% Similarity=0.752 Sum_probs=239.3
Q ss_pred CCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccccc
Q psy15359 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 89 (281)
Q Consensus 11 ~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~ 89 (281)
||+ +||+++|++||++||||++++.++|+|+++|+.++.+. ++.++|+||+.+++++++++++|++|++.+++|+.+
T Consensus 1 Mt~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpe~~~~~~~~~~~~~~~~~pe~~~e~~~~~~~~~~~D~~~~~~di~~ 78 (338)
T 2eja_A 1 MPK--NDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLKILGVDAIIIFSDILV 78 (338)
T ss_dssp -CC--CCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHTTSSSHHHHHHCHHHHHHHHHHHHHHHCCSCEECSCCTTG
T ss_pred CCc--hHHHHHHHcCCCCCCCCcchhhhhccccHHHHHHHhccccHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccCcce
Confidence 788 89999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred chhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCC
Q psy15359 90 IPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGG 169 (281)
Q Consensus 90 ~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~ 169 (281)
++++||+++.+.++.+|.+ ++.+|+++++. +++ ++++.+.++++.+++++ +++|++++++||||++++|++|+
T Consensus 79 ~~~a~G~~~~~~~~~gP~i----~~~~d~~~l~~-~~~-~~l~~v~eai~~l~~~~-~~~plig~~~~P~tla~~l~egg 151 (338)
T 2eja_A 79 PLEPLGVKVEFVEGEGPKL----SWSGKVSDLKK-YDP-SQNAYVYEIIKRVKEAQ-DEVPVIGFAGAPFTLLSYLIEGG 151 (338)
T ss_dssp GGGGGTCEEEEETTTEEEE----ECCSCGGGSCC-CCG-GGGHHHHHHHHHHHHHC-CSSCEEEEEECHHHHHHHHHHTS
T ss_pred eHHHcCCeEEeCCCCCCCC----CCHHHHHhcCC-CCh-hhhHHHHHHHHHHHHHh-cCccEEEecchHHHHHHHHHcCC
Confidence 9999999999988766755 77889999976 777 88999999999999998 67999999999999999999887
Q ss_pred CCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc
Q psy15359 170 GSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK 249 (281)
Q Consensus 170 ~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~ 249 (281)
+++++++++++++++||.+|++|+++++.+++|+++++++|+|+|+++|+|+++|||++|++|++||+|++++.+++. +
T Consensus 152 ~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~ 230 (338)
T 2eja_A 152 ASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-S 230 (338)
T ss_dssp CCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-C
T ss_pred CCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-C
Confidence 777799999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred cCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 250 QMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 250 ~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
| +++++|+||+...++++.++|.+.++
T Consensus 231 g----~~~i~~~~g~~~~l~~l~~~g~d~~~ 257 (338)
T 2eja_A 231 D----TPVIYFFRGSSSFIDLAVDYRADALS 257 (338)
T ss_dssp C----CCEEEEESSHHHHHHHHTTSCCSEEE
T ss_pred C----CCEEEEcCCcHHHHHHHHHcCCCEEE
Confidence 5 89999999997789999999887654
No 5
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=100.00 E-value=4.9e-52 Score=378.88 Aligned_cols=262 Identities=37% Similarity=0.658 Sum_probs=244.8
Q ss_pred cCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccc
Q psy15359 9 MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL 88 (281)
Q Consensus 9 ~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~ 88 (281)
..+|+ +||+++|++||++||||+|++.++|+|+++|+.++.+.++.++|.||+++++++++++++|++|++.+++|+.
T Consensus 9 ~~~t~--~er~~~al~g~~~dr~Pvw~mrqagr~lpey~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~ 86 (359)
T 2inf_A 9 KRETF--NETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIM 86 (359)
T ss_dssp ---CC--CCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSCEECCCCTT
T ss_pred ccCCh--HHHHHHHHcCCCCCcCCEeehhhhCcccHHHHHHHcCCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccccc
Confidence 35666 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhC
Q psy15359 89 VIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEG 168 (281)
Q Consensus 89 ~~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G 168 (281)
+++++||+++.+.++.+|.+.+|+++.+|+++++. ++++++++.++++++.+++++ +++|++++++||||+++++++|
T Consensus 87 ~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~-~~~~~~l~~~~ea~~~l~~~~-~~~~l~g~~~~P~tla~~l~~g 164 (359)
T 2inf_A 87 TPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQ-IDPEQDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEG 164 (359)
T ss_dssp TTGGGGTCCEECCSSSCCEESSCCCSHHHHHTCCC-CCHHHHSHHHHHHHHHHHHHT-CSSCEEEEEECHHHHHHHHHHC
T ss_pred ccHHHcCCEEEecCCCCCCcCCCCCCHHHHHhcCC-CCccchHHHHHHHHHHHHHHh-CCcceEEEcCcHHHHHHHHHcC
Confidence 99999999999998888988789999999999976 677788999999999999998 6789999999999999999987
Q ss_pred CCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh
Q psy15359 169 GGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL 248 (281)
Q Consensus 169 ~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~ 248 (281)
++++++++++++++++||.++++|+++++.+++++++++++|+++|+++|+|++++||++|++|++||++++++.+++.
T Consensus 165 g~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~- 243 (359)
T 2inf_A 165 GPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE- 243 (359)
T ss_dssp SCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGG-
T ss_pred CCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHc-
Confidence 7777899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359 249 KQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS 280 (281)
Q Consensus 249 ~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~ 280 (281)
| +++++|+||+...++.+.+++.+.++
T Consensus 244 -g----~~~i~~~~G~~~~l~~l~~~g~d~~~ 270 (359)
T 2inf_A 244 -N----VPLIMFGVGASHLAGDWHDLPLDVVG 270 (359)
T ss_dssp -C----SCEEEECTTCGGGHHHHHTSSCSEEE
T ss_pred -C----CcEEEEcCCcHHHHHHHHHhCCCEEE
Confidence 6 89999999997789999999987664
No 6
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=100.00 E-value=8e-52 Score=376.73 Aligned_cols=269 Identities=34% Similarity=0.538 Sum_probs=241.4
Q ss_pred ccccccCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeee
Q psy15359 4 VSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASI 82 (281)
Q Consensus 4 ~~~~~~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~ 82 (281)
|.+-|+.||+ +||+++|++||++||||+++|.++|+|+++|+.++.+. ++.++|+||+++++++++++++|++|++.
T Consensus 2 ~~~~~~~~t~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~ 79 (353)
T 1j93_A 2 VAEPKAINAT--QPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVI 79 (353)
T ss_dssp ---------C--CCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEE
T ss_pred CccccccCCh--hHHHHHHHCCCCCCcCCeeehHhhccchHHHHHHHhccccHHHHhcCHHHHHHHHHHHHHHhCCCEEE
Confidence 5677899999 89999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred eccccccchhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHH
Q psy15359 83 IFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLM 162 (281)
Q Consensus 83 ~~~d~~~~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a 162 (281)
+++|+.+++++||+++.+.++.+|.+.+|+++.+|+++++. +++.++++.+.++++.+++++++++|++++++||||++
T Consensus 80 ~~~di~~~~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~-~~~~~~~~~v~e~~~~l~~~~~~~~~~~g~~~~P~tla 158 (353)
T 1j93_A 80 LFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVRE-FIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLA 158 (353)
T ss_dssp CCCCTTTHHHHTTCCEEEETTTEEEESSCCCSHHHHHHCCC-CCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHH
T ss_pred ecCCcccCHHHcCCeEEecCCCCCeeCCCCCCHHHHHhcCC-CChhhhHHHHHHHHHHHHHHhCCCceEEEecChHHHHH
Confidence 99999999999999999998888887789999999999974 67667899999999999999988899999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHH
Q psy15359 163 SYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 163 ~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+++++|++++++++++++++++||.+|++|+++++.+++++++++++|+++|+++|+|+++|||++|++|++||++++++
T Consensus 159 ~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~ 238 (353)
T 1j93_A 159 SYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD 238 (353)
T ss_dssp HHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHH
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 243 KVKAQLKQMNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 243 ~i~~~~~~~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
.+++..++ ++++ |+||... .++.+.+.+.+.++
T Consensus 239 ~i~~~~~~----~~~i-h~c~g~~~~l~~l~~~g~d~~~ 272 (353)
T 1j93_A 239 SVKLTHPN----LPLI-LYASGSGGLLERLPLTGVDVVS 272 (353)
T ss_dssp HHHHHSTT----CCEE-EECSSCTTTGGGGGGGCCSEEE
T ss_pred HHHHhCCC----CCEE-EECCChHHHHHHHHhcCCCEEE
Confidence 99986434 6765 6666654 78999888877654
No 7
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=100.00 E-value=2.7e-49 Score=359.39 Aligned_cols=249 Identities=24% Similarity=0.346 Sum_probs=219.9
Q ss_pred CCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccccc
Q psy15359 10 TFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 89 (281)
Q Consensus 10 ~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~ 89 (281)
+||+ |||+++|++||++||||||+|.++|. ++|+..+ |.++.++|.||+++++++++++++||+|++.+++|+.+
T Consensus 12 ~MT~--kER~l~al~ge~~DR~Pvw~mrqag~--~e~~~~~-~~~f~e~~~~pe~~ae~tl~~~~~~~~Da~iifsDil~ 86 (348)
T 4ay7_A 12 EFTL--KTRLLAALKGEPVDKVPVCSVTQTGI--VELMDVV-GAPWPEAHTNPELMAKLALANHELSGLEAVRLPYCLTV 86 (348)
T ss_dssp CCCH--HHHHHHHHHTCCCSSCCBCCSSCCCC--HHHHHHH-TCCTTHHHHCHHHHHHHHHHHHHTTCCSSEEECSCSCH
T ss_pred cCCH--HHHHHHHHcCCCCCCCCEEechhhhH--HHHHHHh-CCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 5999 99999999999999999999988883 6666554 78999999999999999999999999999999999999
Q ss_pred chhcCCCEEEecC-CCCCcCC-CCCCChHHHhcCCCCCC--cccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHH
Q psy15359 90 IPQALGMVVEMKP-AVGPVLP-EPLVIPEDLKKLKTPVD--VYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYM 165 (281)
Q Consensus 90 ~~ea~G~~~~~~~-~~~p~~~-~~i~~~eD~~~l~~~~d--~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l 165 (281)
++++||+++.|.+ +.+|.+. .|+.+ |++.+..+.+ .+++++.++++++++++++++++|++++++||||+++++
T Consensus 87 ~~ea~G~~v~~~~~~~~P~v~~~~~~~--~~~~~~~~~~~~~~~~l~~v~eai~~l~~~l~~~~pligf~g~P~Tla~~l 164 (348)
T 4ay7_A 87 LVEAMGCEINMGTKNRQPSVTGHPYPK--DLEGAAVPADLLQRGRIPVVLEAIKIIREKVGPDVPIVGGMEGPVTVASDL 164 (348)
T ss_dssp HHHHTTCEEECCBTTBCCEEEECSCSS--CCTTCCCCTTGGGSTTHHHHHHHHHHHHHHHCTTSCEEEEEECHHHHHHHH
T ss_pred chHHcCCeEEecCCCCCCccccCCCcc--hHHHhhCCccccchhhHHHHHHHHHHHHHHhCCCeeEEEeccchHHHHHhc
Confidence 9999999999954 4567664 45543 3444433112 247899999999999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHH
Q psy15359 166 IEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEK 243 (281)
Q Consensus 166 ~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~ 243 (281)
+ |.++++++++++||.++++|+++++.+++|+++++++|+|+|+++|+|++ +|||++|++|++||+|++++.
T Consensus 165 ~------~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~ 238 (348)
T 4ay7_A 165 V------SVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASS 238 (348)
T ss_dssp H------CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred c------cchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhh
Confidence 9 68899999999999999999999999999999999999999999999986 699999999999999999998
Q ss_pred HHHhhccCCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359 244 VKAQLKQMNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 244 i~~~~~~~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~ 280 (281)
+++ ..++|+||++. .++++.+++.+.+|
T Consensus 239 ~~~---------~~iih~~g~~~~~l~~~~~~g~d~i~ 267 (348)
T 4ay7_A 239 VNS---------VTVLHICGNVNPILSDMADCGFEGLS 267 (348)
T ss_dssp SSS---------EEEEECCSCCHHHHHHHHTSCCSEEE
T ss_pred ccC---------CcEEEecCCcHHHHHHHHHhcccccc
Confidence 852 45899999987 68999999987664
No 8
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=98.25 E-value=8.2e-07 Score=87.61 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
..+.++.+++.. +.|+.+.+.||+|++.++. ++ ++...+++++.+++.+.+.++.+.++|++.
T Consensus 539 ~ve~~~~l~~~~--~~pvK~~l~GP~Tl~~~~~-~r--------------~~~~~~~l~~~lA~a~~~ev~~L~~aG~~~ 601 (765)
T 1u1j_A 539 TVFWSAMAQSMT--SRPMKGMLTGPVTILNWSF-VR--------------NDQPRHETCYQIALAIKDEVEDLEKGGIGV 601 (765)
T ss_dssp STHHHHHHTTSC--SSCBEEEEECHHHHHHTSE-EC--------------TTSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHh--cCCeEEEecCHHHHHHHHh-cc--------------CcCcHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 345666666654 2478889999999987776 21 223678899999999999999999999999
Q ss_pred EEEecCCCC--C----CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCCC
Q psy15359 214 LQLFESNAE--Y----LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 214 i~i~d~~~~--~----iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~~ 280 (281)
|++-|+... + ++++.|.+++.+.++++++.+.. + ..+.+|+| |+.. .++.|.+.+.+.+|
T Consensus 602 IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v~~---~----~~i~~HiC~G~~~~i~~~l~~~~~D~is 669 (765)
T 1u1j_A 602 IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD---S----TQIHTHMCYSHFNDIIHSIIDMDADVIT 669 (765)
T ss_dssp EEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTSCS---S----SEEEEECSCSCCTTTHHHHHTTCCSEEE
T ss_pred EEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---C----CeEEEEeccCCcHHHHHHHHhCCCCEEE
Confidence 988887532 2 67899999999999999987753 3 57899999 9876 47777777666553
No 9
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=98.22 E-value=6.1e-07 Score=88.32 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
..+.++.+++..+ .|+.+.+.||+|++.++. ++ ++...+++++.+++.+.+.++.+.++|++.
T Consensus 524 ~ve~~~~l~~~t~--~pvK~~l~GP~Tl~~~~~-~r--------------~~~~~~el~~~lA~a~~~ei~~L~~aG~~~ 586 (755)
T 2nq5_A 524 TVEETVYAQSLTD--RPVKGMLTGPITITNWSF-ER--------------TDIPRDQLFNQIGLAIKDEIKLLENAGIAI 586 (755)
T ss_dssp SHHHHHHHHHTCS--SCBEEEEECHHHHHHHSB-CC--------------SSSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcC--CCeEEEecCHHHHHHHHh-cc--------------CcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4567777777653 478899999999998776 21 223678899999999999999999999999
Q ss_pred EEEecCCCC--C----CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCCC
Q psy15359 214 LQLFESNAE--Y----LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPMLS 280 (281)
Q Consensus 214 i~i~d~~~~--~----iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~~ 280 (281)
|++-|+..+ + ++++.|.+++.+.++++++.+.. + ..+.+|+| |+.. .++.|.+.+.+.+|
T Consensus 587 IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~v~~---~----~~i~~HiC~G~~~~i~~~L~~~~aD~is 654 (755)
T 2nq5_A 587 IQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVKD---E----TQIHTHMCYSKFDEIIDAIRALDADVIS 654 (755)
T ss_dssp EEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSSSCT---T----SEEEEEECCSCCSTTHHHHHHHCCSEEE
T ss_pred EEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---C----CeEEEEeccCCcHHHHHHHHhCCCCEEE
Confidence 988887532 2 67789999999999999887753 3 57899999 9876 46666666655443
No 10
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=98.11 E-value=3e-06 Score=76.95 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCCcc-EEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15359 134 VFEAITLTRHKLEGKVP-LIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQ 212 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d 212 (281)
..+.++.+++..++ .| +-+.+.||+|++..+. ..+++ | ++.++++++.+++.+.+.++.+.++|++
T Consensus 116 ~~~~~~~l~~~~~~-~~~vK~~l~gP~tl~~~~~------~~~~~----Y--~~~~~~l~~~la~a~~~ei~~l~~aG~~ 182 (375)
T 1ypx_A 116 FIEDFIFLKEAVGD-NHVAKQTIPSPAMLHYRGD------IEYQP----Y--LDDAEKFANDLATAYQKAIQAFYDAGCR 182 (375)
T ss_dssp HHHHHHHHHHHHCS-SSEECEEEECTHHHHHHEE------ECSHH----H--HHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcC-CCceEEecCCHHHHHHHHh------cchhh----c--cChHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 56777777777653 46 5788899999998765 22233 2 2445889999999999999999999999
Q ss_pred EEEEecCC-CCC-------------CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-----------CCcc-
Q psy15359 213 LLQLFESN-AEY-------------LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-----------GAPK- 266 (281)
Q Consensus 213 ~i~i~d~~-~~~-------------iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-----------G~~~- 266 (281)
.|++-|+. +.. .+++.|.+++.+.++++++.+.+ + ..+.+|+| |...
T Consensus 183 ~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~---~----~~i~~HiC~gn~~s~~~~~g~~~~ 255 (375)
T 1ypx_A 183 YLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPA---D----MVITMHICRGNFRSTWIAEGGYGP 255 (375)
T ss_dssp EEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCT---T----CEEEEEECCC----------CCSG
T ss_pred EEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCC---C----CeEEEEEeccccCCccccccchHH
Confidence 99887764 222 36788889888888888877653 2 57999999 4443
Q ss_pred cchhhh-cCCCCCC
Q psy15359 267 QGHNCY-NYSNPML 279 (281)
Q Consensus 267 ~~~~~~-~~~~~~~ 279 (281)
.++.|. +.+.+.+
T Consensus 256 i~~~l~~~~~~d~i 269 (375)
T 1ypx_A 256 VAETLFGKLNIDGF 269 (375)
T ss_dssp GGHHHHTTCCCSEE
T ss_pred HHHHHHhhCCCCEE
Confidence 567776 6655544
No 11
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=97.77 E-value=6.1e-05 Score=74.12 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
.++.++..++.+ ++++-..+.||+|++.... + .+ .++++++.+++...++++.+.++|++.
T Consensus 137 ~l~~~~eA~~~~--g~~vK~vl~GP~Tla~l~k------~----------~~-~~~dll~~L~~~y~~~l~~L~~~Ga~~ 197 (755)
T 2nq5_A 137 LLDLYLEAREVV--GDKAKPVITGPITYVALST------G----------VE-DFTAAVKSLLPLYKQVFTELVKAGASY 197 (755)
T ss_dssp HHHHHHHHHHHH--GGGEEEEEECHHHHHHTCB------S----------CS-CHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhc--CCCcEEEEccHHHHHHHhc------C----------Cc-HHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 445555555444 4678888999999986322 1 12 356899999999999999999999999
Q ss_pred EEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe-cCCcccchhhhcCCCCCC
Q psy15359 214 LQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA-KGAPKQGHNCYNYSNPML 279 (281)
Q Consensus 214 i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~-cG~~~~~~~~~~~~~~~~ 279 (281)
|++-+|... -++++ +.+.+.+.++++.+.+. + .++++|+ ||+...++.+.+.|.+-|
T Consensus 198 VQiDEP~L~~dl~~~-~~~~~~~ay~~l~~~~~----~----~~v~lhtyfG~~~~~~~l~~l~vd~l 256 (755)
T 2nq5_A 198 IQVDEPIFVTDEGKD-YLQAAKAVYAYFAKEVP----D----AKFIFQTYFEGLIDSQVLSQLPVDAF 256 (755)
T ss_dssp EEEECGGGGSSGGGG-GHHHHHHHHHHHHHHST----T----CEEEEECCSSCCTTHHHHTTSSCSEE
T ss_pred EEEeCCcccCCCCHH-HHHHHHHHHHHHHhccc----C----CcEEEEEeCCChHHHHHHHhCCCCEE
Confidence 988887643 36655 88888888888764331 2 5677776 998767777777776544
No 12
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=97.23 E-value=0.00033 Score=69.12 Aligned_cols=122 Identities=10% Similarity=0.005 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCH-H-HHHHHHHHHHHHHHHHHHHHHHhC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYP-E-ESKKLLEILTNVIVDYLVGQAKAG 210 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~P-e-~v~~lle~i~d~~i~~~~~~~e~G 210 (281)
..++.++.+++. ++++...+.||+|++ ++ |+ .....+ + ..+++++.+++.+.+.++++.++|
T Consensus 136 ~~l~~~~~ak~~---g~~~K~~l~GP~Tll--~l-~k----------~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG 199 (765)
T 1u1j_A 136 KAVNEYKEAKAL---GVDTVPVLVGPVSYL--LL-SK----------AAKGVDKSFELLSLLPKILPIYKEVITELKAAG 199 (765)
T ss_dssp HHHHHHHHHHHT---TCCCEEEEECHHHHH--HT-CE----------ECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHhc---CCCceEEECCHHHHH--Hh-hh----------cccccCccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 366777777654 366777889999998 43 10 011122 2 357889999999999999999999
Q ss_pred CCEEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc--cchhhhcCC-CCCC
Q psy15359 211 AQLLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK--QGHNCYNYS-NPML 279 (281)
Q Consensus 211 ~d~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~--~~~~~~~~~-~~~~ 279 (281)
++.|++-+|.. ..++++. .+.+.+.+..+.+.+ ++ .++++|+| |+.. .++.+.+.+ .+-|
T Consensus 200 ~~~VQiDEP~L~~~l~~~~-~~~~~~a~~~l~~~~----~~----~~i~lhtc~G~~~~~~~~~l~~l~~vd~l 264 (765)
T 1u1j_A 200 ATWIQLDEPVLVMDLEGQK-LQAFTGAYAELESTL----SG----LNVLVETYFADIPAEAYKTLTSLKGVTAF 264 (765)
T ss_dssp CCEEEEECGGGGSCCCHHH-HHHHHHHHHHSTTTT----CS----SEEEEECCSSCCCHHHHHHHTTCTTCCEE
T ss_pred CCEEEEcCCccccCCCHHH-HHHHHHHHHHHHhhc----CC----CeEEEEeCCCCcchHHHHHHHcCCCCcEE
Confidence 99998888754 4577754 444444444333221 13 68999999 7775 477777777 5543
No 13
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=97.22 E-value=0.00038 Score=62.58 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+.++.+++.. +.|+-+.+.||.|++.... .+ .|.+ ..++++.+++.+.+.++.+.++|++.|+
T Consensus 127 ~~~~~~~~~t--~~~vK~~lpgP~t~~~~~~--------~~----~y~~---~~e~~~dlA~a~~~ei~~l~~aG~~~IQ 189 (357)
T 3rpd_A 127 EDAKFLRKQT--TQPIKWALPGPMTMIDTLY--------DD----HYKS---REKLAWEFAKILNEEAKELEAAGVDIIQ 189 (357)
T ss_dssp HHHHHHHHHC--SSCBEEEEECHHHHHTSSE--------ES----SSCC---HHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhhc--cCCceEEeCCHHHHHHHhh--------hc----cCCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4456666654 3588889999999864322 11 1222 3467788888888999999999999999
Q ss_pred EecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 216 LFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 216 i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
+-|+.-+. .++.|.++..+.++++++.++ ..+.+|+|
T Consensus 190 iDeP~l~~-~~~~~~~~~v~~~n~~~~~~~---------~~~~iHiC 226 (357)
T 3rpd_A 190 FDEPAFNV-FFDEVNDWGIACLERAIEGLK---------CETAVHIC 226 (357)
T ss_dssp EECGGGGT-CHHHHHHTHHHHHHHHHTTCC---------SEEEEEEC
T ss_pred ecCccccc-cHHHHHHHHHHHHHHHHhCCC---------CceEEEEe
Confidence 98875332 467777777766666665442 35678999
No 14
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=96.73 E-value=0.0012 Score=64.64 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
++.++.+++ +++ .|+-+.+.||+|++.... + .++....++++.+++.+.+.++.+.++|++.|
T Consensus 544 lde~~~Aks-l~~-~pvK~~LtGPvTlL~ls~-~--------------r~d~~r~ell~dLA~ayreeI~~L~~AGa~~I 606 (766)
T 1t7l_A 544 LKEITYAQS-LTE-KPVKGMLTGPVTIMSWSY-Y--------------REDIPEREIAYQIALAINEEVKDLEEAGIKIV 606 (766)
T ss_dssp HHHHHHHHH-TCS-SCBEEEEECHHHHHHTSE-E--------------CSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH-hcC-CCeEEEEeCHHHHHHHhh-c--------------cCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 556666654 444 467888999999886433 1 01124578889999999999999999999999
Q ss_pred EEecCCCC-CCCH-----HHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcc-cchhhhcCCCCCC
Q psy15359 215 QLFESNAE-YLDL-----DLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPK-QGHNCYNYSNPML 279 (281)
Q Consensus 215 ~i~d~~~~-~iSp-----~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~-~~~~~~~~~~~~~ 279 (281)
++-+|.-. .+++ +.+.+++.+.++.. +.+.. + ..+.+|+| |+.. .++.+.+.+.+.+
T Consensus 607 QIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a-~gv~~---~----~~I~lH~C~G~~~di~~~L~~l~VD~I 671 (766)
T 1t7l_A 607 QIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARP---E----TQIHAHMCYSDFNEIIEYIHQLEFDVI 671 (766)
T ss_dssp EEECTHHHHTSCSSGGGHHHHHHHHHHHHHHH-TCCCT---T----SEEEEECCCSCCTTTHHHHTTSCCSEE
T ss_pred EEcCCcccccCCCcchhHHHHHHHHHHHHHHh-hcCCC---C----ceEEEEEecCchHHHHHHHHcCCCCEE
Confidence 88877421 2332 33444443333333 32211 2 57899999 7765 5777777666544
No 15
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=94.99 E-value=0.02 Score=56.20 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+..+.+++..+ .|+-+.+.||.|++.... .+ . +. .-.++++-++..+.+.++.+.++|+..|+
T Consensus 572 ~~~~~~qs~t~--~pvK~~L~gP~ti~~~s~-~r---~----------~~-~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQ 634 (789)
T 3ppg_A 572 KESVYAQSITS--KPMKGMLTGPVTILRWSF-PR---D----------DV-SGKIQALQLGLALRDEVNDLEGAGITVIQ 634 (789)
T ss_dssp HHHHHHHHTCS--SCBEEEEECHHHHHHTSB-CC---S----------SS-CHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhhcc--CCCceeccchHhHhhhhc-cc---c----------CC-CHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44455555442 377778889999875432 00 0 11 12577788888888889999999999998
Q ss_pred EecCCCC--C-C----CHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec-CCcccchhhhcCC
Q psy15359 216 LFESNAE--Y-L----DLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK-GAPKQGHNCYNYS 275 (281)
Q Consensus 216 i~d~~~~--~-i----Sp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c-G~~~~~~~~~~~~ 275 (281)
+-|+.-. + . +++.|.++....++++++.+.. + ..+.+|+| |+... +.+.+..
T Consensus 635 iDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~p~---d----~~I~tHiC~Gnf~~-~~I~~l~ 694 (789)
T 3ppg_A 635 VDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVEN---S----TQIHSHFCYSDLDP-NHIKALD 694 (789)
T ss_dssp EECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSSCT---T----SEEEEECC---CCH-HHHHHHC
T ss_pred EcccchhhcccccccCCHHHHHHHHHHHHHHHHhcCCC---C----cEEEEeccCCCCCh-hHHHhCC
Confidence 8876531 1 2 2333333333333333322221 2 46789999 76543 4444333
No 16
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=84.05 E-value=1 Score=39.49 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 185 PEESKKLLEILTNVIVDYLVGQA-KAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 185 Pe~v~~lle~i~d~~i~~~~~~~-e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
|+.+.+.++...+...++++.++ +.|||+|.+.. +. +..+|++.+.+. ++.+.+.. + +|+++
T Consensus 68 ~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~--------V~~v~~~~-~----vPlsI 134 (323)
T 4djd_D 68 PDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVAT--------VKEVLQAV-G----VPLVV 134 (323)
T ss_dssp CHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHH--------HHHHHHHC-C----SCEEE
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHH--------HHHHHhhC-C----ceEEE
Confidence 45566666555566888999998 99999998863 32 345999886663 35554443 5 89999
Q ss_pred EecCCcc
Q psy15359 260 FAKGAPK 266 (281)
Q Consensus 260 H~cG~~~ 266 (281)
--||+.+
T Consensus 135 Dg~~~~T 141 (323)
T 4djd_D 135 VGCGDVE 141 (323)
T ss_dssp ECCSCHH
T ss_pred ECCCCCC
Confidence 9999865
No 17
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=82.52 E-value=4.7 Score=34.64 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+...+.++.+.++|++.|.+.|..+ .++|+.+.+++. .+++..|+ +++-+|++-+..
T Consensus 156 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv~--------~l~~~~~~----~~i~~H~Hn~~G 212 (298)
T 2cw6_A 156 AKVAEVTKKFYSMGCYEISLGDTIG-VGTPGIMKDMLS--------AVMQEVPL----AALAVHCHDTYG 212 (298)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTS-CCCHHHHHHHHH--------HHHHHSCG----GGEEEEEBCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCC-CcCHHHHHHHHH--------HHHHhCCC----CeEEEEECCCCc
Confidence 3555667777899999999988765 588988776654 33333334 678888876654
No 18
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.48 E-value=3.9 Score=35.26 Aligned_cols=56 Identities=7% Similarity=-0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
..+++++++.++|+|.|.+.|..|. ..|+...+. ++.+++..|+ +++.+|.+-+..
T Consensus 160 ~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~~~~l--------v~~l~~~~~~----~~l~~H~Hn~~G 215 (302)
T 2ftp_A 160 QVAWVARELQQMGCYEVSLGDTIGV-GTAGATRRL--------IEAVASEVPR----ERLAGHFHDTYG 215 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESSSC-CCHHHHHHH--------HHHHTTTSCG----GGEEEEEBCTTS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC-cCHHHHHHH--------HHHHHHhCCC----CeEEEEeCCCcc
Confidence 4556666777899999999977664 678776544 4455554444 789999866554
No 19
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=80.66 E-value=5.3 Score=35.07 Aligned_cols=57 Identities=5% Similarity=0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++.+.++|++.|.+.|..| .+.|....+++ +.+++..|+ +++-+|++-+..
T Consensus 169 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~p~----~~i~~H~Hnd~G 225 (337)
T 3ble_A 169 DYVKSLVEHLSKEHIERIFLPDTLG-VLSPEETFQGV--------DSLIQKYPD----IHFEFHGHNDYD 225 (337)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTC-CCCHHHHHHHH--------HHHHHHCTT----SCEEEECBCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCC-CcCHHHHHHHH--------HHHHHhcCC----CeEEEEecCCcc
Confidence 4566777788899999998888765 47887766554 445544444 788999887765
No 20
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=79.87 E-value=5.8 Score=33.96 Aligned_cols=53 Identities=9% Similarity=-0.070 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
.++++.+.++|+|.+.+.|..| ..+|+.+.++ ++.+++..++ +++.+|+.-+.
T Consensus 158 ~~~~~~~~~~G~d~i~l~Dt~G-~~~P~~~~~l--------v~~l~~~~~~----~~l~~H~Hn~~ 210 (295)
T 1ydn_A 158 ASVTEQLFSLGCHEVSLGDTIG-RGTPDTVAAM--------LDAVLAIAPA----HSLAGHYHDTG 210 (295)
T ss_dssp HHHHHHHHHHTCSEEEEEETTS-CCCHHHHHHH--------HHHHHTTSCG----GGEEEEEBCTT
T ss_pred HHHHHHHHhcCCCEEEecCCCC-CcCHHHHHHH--------HHHHHHhCCC----CeEEEEECCCc
Confidence 3445566788999999998655 4788876654 4455544333 67888985443
No 21
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=77.47 E-value=9.2 Score=32.81 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| ...|..+.+++ +.+++..|+ -+.+++-+|+.-+..
T Consensus 150 ~~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~-~~~~~l~~H~Hnd~G 209 (293)
T 3ewb_X 150 AFLIEAVQTAIDAGATVINIPDTVG-YTNPTEFGQLF--------QDLRREIKQ-FDDIIFASHCHDDLG 209 (293)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSS-CCCHHHHHHHH--------HHHHHHCTT-GGGSEEEEECBCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCC-CCCHHHHHHHH--------HHHHHhcCC-ccCceEEEEeCCCcC
Confidence 4556777788889999998888776 48888766543 444443321 000568899887765
No 22
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=76.55 E-value=4.9 Score=34.83 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++.++++.++|++.|.+.|..| .+.|+...+++ +.+++..|+ +++-+|+.-+.+
T Consensus 158 ~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~----~~l~~H~Hnd~G 213 (307)
T 1ydo_A 158 QVIRLSEALFEFGISELSLGDTIG-AANPAQVETVL--------EALLARFPA----NQIALHFHDTRG 213 (307)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSSC-CCCHHHHHHHH--------HHHHTTSCG----GGEEEECBGGGS
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCC-CcCHHHHHHHH--------HHHHHhCCC----CeEEEEECCCCc
Confidence 455666777889999998888766 57888766554 455544444 688899865543
No 23
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=76.52 E-value=7.9 Score=33.38 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.|. .||.+..++++. .+++.++. . +|++.++.++.+
T Consensus 40 ~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~st 97 (304)
T 3cpr_A 40 REVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLK----AVREEVGD---R----AKLIAGVGTNNT 97 (304)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHH----HHHHHHTT---T----SEEEEECCCSCH
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEecCCCCCH
Confidence 34556678899999988887764 499998766543 33344432 2 789988887654
No 24
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=76.33 E-value=7.6 Score=33.22 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+++.|++++++..+.+. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pviaGvg~~~t 82 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVM----MTLDLADG---R----IPVIAGTGANAT 82 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCccH
Confidence 3445667778899999988887774 499998766543 33344432 3 789999887654
No 25
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=75.89 E-value=7.9 Score=33.25 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.+. .+|.+..++++. .+++.++. . +|++.|+.++.+
T Consensus 30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 88 (297)
T 3flu_A 30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIE----AVVKHVAK---R----VPVIAGTGANNT 88 (297)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCcCH
Confidence 345556678999999988887774 499998766553 33344432 3 789998877654
No 26
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=75.84 E-value=7.6 Score=33.24 Aligned_cols=57 Identities=9% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.+. .||.+..++.+. .+++.++. . +|++.|+.++.+
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pviaGvg~~~t 82 (291)
T 3tak_A 24 LEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIK----EIIRVANK---R----IPIIAGTGANST 82 (291)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHH----HHHHHhCC---C----CeEEEeCCCCCH
Confidence 445566778999999988777764 399988755443 23333332 2 789999887654
No 27
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=75.19 E-value=8.6 Score=33.13 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++++. .+++.++. . +|++.++.++.+
T Consensus 34 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~~~~~~g---r----vpViaGvg~~~t 92 (303)
T 2wkj_A 34 LRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLE----IVAEEAKG---K----IKLIAHVGCVST 92 (303)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---T----SEEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCCCH
Confidence 345566778899999988887774 399998776553 33344432 3 789998877654
No 28
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=75.06 E-value=8.4 Score=36.16 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK-QMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~-~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| .+.|..+.+.+ +.+++..| + +++-+|++-+.+
T Consensus 175 e~~~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv--------~~l~~~~p~~----i~I~~H~Hnd~G 232 (539)
T 1rqb_A 175 EGYVKLAGQLLDMGADSIALKDMAA-LLKPQPAYDII--------KAIKDTYGQK----TQINLHCHSTTG 232 (539)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTC-CCCHHHHHHHH--------HHHHHHHCTT----CCEEEEEBCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCC-CcCHHHHHHHH--------HHHHHhcCCC----ceEEEEeCCCCC
Confidence 3556677777889999998888776 47787766554 44444433 4 789999887765
No 29
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=74.90 E-value=9.1 Score=32.94 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~----~~~~~~~g---r----vpViaGvg~~~t 93 (301)
T 1xky_A 35 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYR----HVVSVVDK---R----VPVIAGTGSNNT 93 (301)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSCH
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----ceEEeCCCCCCH
Confidence 345566778899999988887774 499998776653 33344432 3 789988887654
No 30
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=74.70 E-value=7.9 Score=37.69 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| .+.|..+.+ +++.+++..|+ +++-+|++-+..
T Consensus 261 e~~~~~a~~l~~~Ga~~I~l~DT~G-~~~P~~v~~--------lV~~lk~~~p~----~~I~~H~Hnd~G 317 (718)
T 3bg3_A 261 QYYMGLAEELVRAGTHILCIKDMAG-LLKPTACTM--------LVSSLRDRFPD----LPLHIHTHDTSG 317 (718)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTS-CCCHHHHHH--------HHHHHHHHSTT----CCEEEECCCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCC-CcCHHHHHH--------HHHHHHHhCCC----CeEEEEECCCcc
Confidence 4566778888899999998888766 577777554 44555555444 788999987765
No 31
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=74.29 E-value=9.1 Score=32.70 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+++.|++++++..+.|. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pviaGvg~~~t 81 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIE----KVVDVVNG---R----VQVIAGAGSNCT 81 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEECCCSSH
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCCCH
Confidence 3445667778999999988887774 399998766543 33333332 2 789988887654
No 32
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=73.48 E-value=18 Score=32.52 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC--EEEEec-CCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 190 KLLEILTNVIVDYLVGQAKAGAQ--LLQLFE-SNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 190 ~lle~i~d~~i~~~~~~~e~G~d--~i~i~d-~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
++.+.+.+.+...++.+.+.|+. .+.+.. ...++.+...|+++. -+++..++++++..|+ .++++|.|.-.
T Consensus 134 ~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la-~ll~ag~~aVR~v~p~----~~V~ih~~~~~ 207 (399)
T 1ur4_A 134 DKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMS-QLFNAGSQAVRETDSN----ILVALHFTNPE 207 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHH-HHHHHHHHHHHHHCTT----SEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHH-HHHHHHHHHHHHhCCC----CeEEEEeCCCc
Confidence 44455566666666777777754 444443 333444444455444 4778888999988776 78999998654
No 33
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=73.25 E-value=8.4 Score=32.96 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+++.|++++++..+.+. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pvi~Gvg~~~t 82 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIK----FVIDKVNK---R----IPVIAGTGSNNT 82 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCcccH
Confidence 3445667778999999988877764 499998766543 33344332 3 789999887654
No 34
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=73.14 E-value=10 Score=33.25 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK-QMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~-~~~~~~~~ilH~cG~~~ 266 (281)
+...+.++.+.++|++.|.+.|..|. ..|..+.++ ++.+++..| + +++-+|++-+..
T Consensus 149 e~~~~ia~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~----~pi~~H~Hn~~G 206 (345)
T 1nvm_A 149 EKLAEQGKLMESYGATCIYMADSGGA-MSMNDIRDR--------MRAFKAVLKPE----TQVGMHAHHNLS 206 (345)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTCC-CCHHHHHHH--------HHHHHHHSCTT----SEEEEECBCTTS
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCc-cCHHHHHHH--------HHHHHHhcCCC----ceEEEEECCCcc
Confidence 45566677777889999988887764 467765544 455555543 4 789999887654
No 35
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=72.87 E-value=10 Score=33.13 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 58 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---r----vpViaGvg~~st 115 (332)
T 2r8w_A 58 SALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIE----AAATILRG---R----RTLMAGIGALRT 115 (332)
T ss_dssp HHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEEECCSSH
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCCCH
Confidence 34556678899999988887774 499998776653 33344432 2 789998887654
No 36
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=72.53 E-value=8.2 Score=33.07 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.|. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 81 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIE----FAVKRAAG---R----IKVIAGTGGNAT 81 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEECCCSCH
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCCCH
Confidence 3445667778999999988887774 399998766543 33344432 2 788988877654
No 37
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=72.43 E-value=8.7 Score=33.05 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.+. .||.+..++.+. .+++.+... . +|++.|+.++.+
T Consensus 30 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g~--r----vpviaGvg~~~t 89 (301)
T 3m5v_A 30 YARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIE----IAVETCKGT--K----VKVLAGAGSNAT 89 (301)
T ss_dssp HHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTTS--S----CEEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCCC--C----CeEEEeCCCCCH
Confidence 345566678999999988777764 499988766543 333333320 2 789999877654
No 38
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=72.30 E-value=10 Score=34.86 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++.++++.++|++.|.+.|..|. +.|....+ ++..+++.. + +++-+|++-+.+
T Consensus 159 ~~~~~a~~l~~~Gad~I~l~DT~G~-~~P~~v~~--------lv~~l~~~~-~----~~i~~H~Hnd~G 213 (464)
T 2nx9_A 159 TWVDVAQQLAELGVDSIALKDMAGI-LTPYAAEE--------LVSTLKKQV-D----VELHLHCHSTAG 213 (464)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSC-CCHHHHHH--------HHHHHHHHC-C----SCEEEEECCTTS
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCC-cCHHHHHH--------HHHHHHHhc-C----CeEEEEECCCCC
Confidence 4556667778999999988887764 67776555 444555443 3 788999887765
No 39
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=72.13 E-value=14 Score=32.77 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| ...|..+.+++ +.+++..|+ ...+++-+|++-+..
T Consensus 157 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv--------~~l~~~~~~-~~~~~l~~H~Hnd~G 216 (370)
T 3rmj_A 157 DFLAEICGAVIEAGATTINIPDTVG-YSIPYKTEEFF--------RELIAKTPN-GGKVVWSAHCHNDLG 216 (370)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSS-CCCHHHHHHHH--------HHHHHHSTT-GGGSEEEEECBCTTS
T ss_pred HHHHHHHHHHHHcCCCEEEecCccC-CcCHHHHHHHH--------HHHHHhCCC-cCceEEEEEeCCCCC
Confidence 5667778888899999998888776 57888876654 344433221 000568889887764
No 40
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.07 E-value=11 Score=32.39 Aligned_cols=57 Identities=12% Similarity=-0.060 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.+. .||.+..++++. .+++.+.. . +|++.|+.++.+
T Consensus 38 l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 96 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLR----AVLEAVGD---R----ARVIAGAGTYDT 96 (304)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---T----SEEEEECCCSCH
T ss_pred HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---C----CeEEEeCCCCCH
Confidence 335556678899999988887774 399998776543 33344432 3 789988765543
No 41
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=71.85 E-value=10 Score=33.31 Aligned_cols=56 Identities=25% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.+. .||.+..++++. .+++.+.. . +|+|.++.++.+
T Consensus 55 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---r----vpViaGvg~~st 112 (343)
T 2v9d_A 55 AALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIAR----FAIDHVDR---R----VPVLIGTGGTNA 112 (343)
T ss_dssp HHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCSSCH
T ss_pred HHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCCCH
Confidence 34556678899999988887774 399998766553 33344432 3 789999887654
No 42
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=71.78 E-value=9.1 Score=33.19 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++++.+++.|++++++..+.+. .||.+..++++. .+++.++. . +|++.++.++.+
T Consensus 48 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---r----vpViaGvg~~st 104 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR----RVVDQVKG---R----IPVIAGTGANST 104 (314)
T ss_dssp HHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCcCH
Confidence 4455567899999988777764 499998776654 33333332 2 789998877654
No 43
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=71.31 E-value=8.8 Score=32.85 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHHHHH-hCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAK-AGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e-~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++ .|++++++..+.|. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 26 l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 85 (293)
T 1f6k_A 26 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR----IAKDEAKD---Q----IALIAQVGSVNL 85 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEECCCSCH
T ss_pred HHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---C----CeEEEecCCCCH
Confidence 3455667788 99999988877764 499998776653 33344432 3 789988887654
No 44
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=70.94 E-value=48 Score=28.19 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
.+.++...+..++++||+..+++.- |+..++.++...++|+|++
T Consensus 63 ~~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 106 (297)
T 3flu_A 63 TAVIEAVVKHVAKRVPVIAGTGANN------------------------------------TVEAIALSQAAEKAGADYT 106 (297)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCcC------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence 3444555566667899988776541 3344677777788899998
Q ss_pred EEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 215 QLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 215 ~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
.+.-|.-...|.+. +.-|+++|.+..
T Consensus 107 lv~~P~y~~~~~~~----l~~~f~~va~a~ 132 (297)
T 3flu_A 107 LSVVPYYNKPSQEG----IYQHFKTIAEAT 132 (297)
T ss_dssp EEECCCSSCCCHHH----HHHHHHHHHHHC
T ss_pred EECCCCCCCCCHHH----HHHHHHHHHHhC
Confidence 77666543345432 233566666654
No 45
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=70.60 E-value=8 Score=33.15 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pviaGvg~~~t 84 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILS----SFIAAGIA---P----SRIVTGVLVDSI 84 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHTTCC---G----GGEEEEECCSSH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCccH
Confidence 3445666778899999988887774 399998766543 22232221 2 789999887654
No 46
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=70.06 E-value=11 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.+. .||.+..++++. .+++.++. . +|++.++.++.+
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~----~~~~~~~g---r----vpViaGvg~~st 93 (306)
T 1o5k_A 35 YERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVS----RTLEIVDG---K----IPVIVGAGTNST 93 (306)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSCH
T ss_pred HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---C----CeEEEcCCCccH
Confidence 345566778999999988877764 499998766543 33344332 3 789998887654
No 47
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=70.04 E-value=8.6 Score=33.02 Aligned_cols=58 Identities=21% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.|. .+|.+..++++. .+++.++. . +|++.++.++.+
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 81 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVA----LVAEQAQG---R----VPVIAGAGSNNP 81 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCBEEECCCSSH
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHH----HHHHHhCC---C----CeEEEccCCCCH
Confidence 3445667778999999987777764 499998776553 33344432 2 789999887654
No 48
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=69.99 E-value=9.1 Score=33.07 Aligned_cols=57 Identities=19% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++.+. .+++.+.. . +|++.++.++.+
T Consensus 31 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 89 (309)
T 3fkr_A 31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTR----TILEHVAG---R----VPVIVTTSHYST 89 (309)
T ss_dssp HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCchH
Confidence 345566778999999988877764 499998766553 23333332 3 799999877654
No 49
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=68.79 E-value=56 Score=28.10 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
.+.++...+..++++||+..+++.- |+..++.++...++|+|++
T Consensus 78 ~~v~~~~v~~~~grvpViaGvg~~s------------------------------------t~~ai~la~~A~~~Gadav 121 (315)
T 3si9_A 78 KRIIELCVEQVAKRVPVVAGAGSNS------------------------------------TSEAVELAKHAEKAGADAV 121 (315)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3444555566667788887766541 3334566777778888887
Q ss_pred EEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 215 QLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 215 ~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
.+.-|.-...|++. +.-|++.|.+..
T Consensus 122 lv~~P~y~~~~~~~----l~~~f~~va~a~ 147 (315)
T 3si9_A 122 LVVTPYYNRPNQRG----LYTHFSSIAKAI 147 (315)
T ss_dssp EEECCCSSCCCHHH----HHHHHHHHHHHC
T ss_pred EECCCCCCCCCHHH----HHHHHHHHHHcC
Confidence 66666543345432 233555555544
No 50
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=68.72 E-value=14 Score=32.83 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 201 DYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++.+++.|++++++..+.|. .+|.+..++.+. .+++.+.. . +|++.++.++.+
T Consensus 84 ~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~----~~ve~~~g---r----vpViaGvg~~st 140 (360)
T 4dpp_A 84 DLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIG----HTVNCFGG---S----IKVIGNTGSNST 140 (360)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---T----SEEEEECCCSSH
T ss_pred HHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHH----HHHHHhCC---C----CeEEEecCCCCH
Confidence 4455667899999988887774 499998776543 33333332 2 788888766543
No 51
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=68.69 E-value=12 Score=31.96 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.+. .||.+..++++. .+++.+.. . +|++.|+.++.+
T Consensus 24 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 83 (292)
T 3daq_A 24 ALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILK----TVIDLVDK---R----VPVIAGTGTNDT 83 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCEEEECCCSCH
T ss_pred HHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCcccH
Confidence 3445566678899999988877764 499998777654 23333332 3 789998766543
No 52
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=68.48 E-value=8.5 Score=32.93 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.+. .+|.+..++.+. .+++.++. . +|++.++.++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----~pviaGvg~~~t 81 (292)
T 2vc6_A 22 ALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVE----ITIKTANG---R----VPVIAGAGSNST 81 (292)
T ss_dssp HHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCBEEECCCSSH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCccH
Confidence 3455677788999999877777664 499998766543 33333332 3 789999887654
No 53
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=67.74 E-value=59 Score=27.94 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
+..++.++...++|+|++.+.-|.-...|++. +.-|+++|.+.. + .|++++.+
T Consensus 105 ~eai~la~~A~~~Gadavlv~~P~y~~~s~~~----l~~~f~~va~a~-----~----lPiilYn~ 157 (314)
T 3qze_A 105 REAVALTEAAKSGGADACLLVTPYYNKPTQEG----MYQHFRHIAEAV-----A----IPQILYNV 157 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH----HHHHHHHHHHHS-----C----SCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH----HHHHHHHHHHhc-----C----CCEEEEeC
Confidence 34467777778889998877766543345433 333566666554 2 56666543
No 54
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=67.55 E-value=12 Score=32.34 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 46 ~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---r----vpViaGvg~~st 103 (315)
T 3si9_A 46 CNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIE----LCVEQVAK---R----VPVVAGAGSNST 103 (315)
T ss_dssp HHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTT---S----SCBEEECCCSSH
T ss_pred HHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCCCH
Confidence 34555678899999988777764 399998766553 33333332 3 789998777654
No 55
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=67.27 E-value=10 Score=32.97 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|+|++++..+.|. .||.+..++++. .+++.+.. . +|++.|+.++.+
T Consensus 34 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 92 (318)
T 3qfe_A 34 QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIA----TARKAVGP---D----FPIMAGVGAHST 92 (318)
T ss_dssp HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHCT---T----SCEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCCCH
Confidence 345566778899999988877764 499998766553 33333332 3 789998877654
No 56
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=67.01 E-value=58 Score=27.57 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
.+.++...+..++++||+..+++.- ++..++.++...++|+|++
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 100 (291)
T 3tak_A 57 TQVIKEIIRVANKRIPIIAGTGANS------------------------------------TREAIELTKAAKDLGADAA 100 (291)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3444555566667899988776541 2334567777788899998
Q ss_pred EEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 215 QLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 215 ~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
.+.-|.-...|.+. +.-|+++|.+.. + .|++++.
T Consensus 101 lv~~P~y~~~~~~~----l~~~f~~ia~a~-----~----lPiilYn 134 (291)
T 3tak_A 101 LLVTPYYNKPTQEG----LYQHYKAIAEAV-----E----LPLILYN 134 (291)
T ss_dssp EEECCCSSCCCHHH----HHHHHHHHHHHC-----C----SCEEEEE
T ss_pred EEcCCCCCCCCHHH----HHHHHHHHHHhc-----C----CCEEEEe
Confidence 77666543345432 234556666554 2 5666654
No 57
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=66.61 E-value=18 Score=31.53 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| ...|..+.++ ++.+++..|+ ...+++-+|+.-+..
T Consensus 151 ~~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~-~~~~~i~~H~Hnd~G 210 (325)
T 3eeg_A 151 AFLARMVEAVIEAGADVVNIPDTTG-YMLPWQYGER--------IKYLMDNVSN-IDKAILSAHCHNDLG 210 (325)
T ss_dssp HHHHHHHHHHHHHTCSEEECCBSSS-CCCHHHHHHH--------HHHHHHHCSC-GGGSEEEECBCCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEecCccC-CcCHHHHHHH--------HHHHHHhCCC-CCceEEEEEeCCCCC
Confidence 4556667778889999988877766 4888876554 4444444321 000567888877654
No 58
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=66.30 E-value=11 Score=32.60 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.+. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 48 ~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---r----vpViaGvg~~~t 105 (315)
T 3na8_A 48 GRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVD----FTLKTVAH---R----VPTIVSVSDLTT 105 (315)
T ss_dssp HHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SCBEEECCCSSH
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---C----CcEEEecCCCCH
Confidence 34556677899999988777764 499998766543 33343432 3 789998876654
No 59
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=65.62 E-value=13 Score=32.75 Aligned_cols=53 Identities=17% Similarity=0.027 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.+. .||.+..++++.= .+.. . +|+|.++.++.+
T Consensus 50 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~-------~~~g---r----vpViaGvg~~st 104 (344)
T 2hmc_A 50 VRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER-------LVKA---G----IPVIVGTGAVNT 104 (344)
T ss_dssp HHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH-------HHHT---T----CCEEEECCCSSH
T ss_pred HHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH-------HhCC---C----CcEEEecCCCCH
Confidence 34556677899999988777764 4999998887654 2222 3 799999887654
No 60
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=64.76 E-value=68 Score=27.56 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
.+.++...+..++++||++.+++.- |+..++.++...++|+|++
T Consensus 80 ~~v~~~~v~~~~grvpViaGvg~~~------------------------------------t~~ai~la~~A~~~Gadav 123 (315)
T 3na8_A 80 DEVVDFTLKTVAHRVPTIVSVSDLT------------------------------------TAKTVRRAQFAESLGAEAV 123 (315)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3444555566666788887765541 2333566666667777777
Q ss_pred EEecCCCCCCCHHHHHHHhHHHHHHHHHH
Q psy15359 215 QLFESNAEYLDLDLFKEFALPYINTINEK 243 (281)
Q Consensus 215 ~i~d~~~~~iSp~~f~ef~~Py~k~l~~~ 243 (281)
.+.-|.-...|++. +.-|+++|.+.
T Consensus 124 lv~~P~y~~~s~~~----l~~~f~~va~a 148 (315)
T 3na8_A 124 MVLPISYWKLNEAE----VFQHYRAVGEA 148 (315)
T ss_dssp EECCCCSSCCCHHH----HHHHHHHHHHH
T ss_pred EECCCCCCCCCHHH----HHHHHHHHHHh
Confidence 66555433344432 22344555444
No 61
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=64.13 E-value=9.4 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++.+. .+++.++ +. +|++.|+.++.+
T Consensus 30 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~---gr----vpViaGvg~~~t 88 (311)
T 3h5d_A 30 IPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFA----AVQKVVN---GR----VPLIAGVGTNDT 88 (311)
T ss_dssp HHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHH----HHHHHSC---SS----SCEEEECCCSSH
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhC---CC----CcEEEeCCCcCH
Confidence 345566778999999988887774 399988665443 2222222 23 799999877654
No 62
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=62.34 E-value=71 Score=27.01 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+.++...+..++++||+..+++.- |+..++.++...++|+|++.
T Consensus 59 ~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 102 (292)
T 3daq_A 59 LILKTVIDLVDKRVPVIAGTGTND------------------------------------TEKSIQASIQAKALGADAIM 102 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEECCCSC------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCcEEEeCCccc------------------------------------HHHHHHHHHHHHHcCCCEEE
Confidence 344445555567899988766541 23345666666777888876
Q ss_pred EecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 216 LFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 216 i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+.-|.-...|.+. +.-|+++|.+..
T Consensus 103 v~~P~y~~~~~~~----l~~~f~~ia~a~ 127 (292)
T 3daq_A 103 LITPYYNKTNQRG----LVKHFEAIADAV 127 (292)
T ss_dssp EECCCSSCCCHHH----HHHHHHHHHHHH
T ss_pred ECCCCCCCCCHHH----HHHHHHHHHHhC
Confidence 6665533344432 333566666655
No 63
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=61.96 E-value=15 Score=31.72 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++++. .+++.+ . . +|+|.++.++.+
T Consensus 31 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~----~~v~~~-g---r----vpViaGvg~~~t 88 (313)
T 3dz1_A 31 IDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVAT----RFIKRA-K---S----MQVIVGVSAPGF 88 (313)
T ss_dssp HHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHH----HHHHHC-T---T----SEEEEECCCSSH
T ss_pred HHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHH----HHHHHc-C---C----CcEEEecCCCCH
Confidence 345566678999999988877764 499998766543 233333 2 3 788888776554
No 64
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=61.77 E-value=27 Score=31.57 Aligned_cols=54 Identities=4% Similarity=0.085 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.++.++++.++|++.|.+.|..+ ...|..+.+++ +.+++.. + +++-+|++-+..
T Consensus 182 ~~~v~~~~~~~Ga~~i~l~DTvG-~~~P~~v~~lv--------~~l~~~~-~----~~i~~H~Hnd~G 235 (423)
T 3ivs_A 182 LLSLYKAVDKIGVNRVGIADTVG-CATPRQVYDLI--------RTLRGVV-S----CDIECHFHNDTG 235 (423)
T ss_dssp HHHHHHHHHHHCCSEEEEEETTS-CCCHHHHHHHH--------HHHHHHC-S----SEEEEEEBCTTS
T ss_pred HHHHHHHHHHhCCCccccCCccC-cCCHHHHHHHH--------HHHHhhc-C----CeEEEEECCCCc
Confidence 35667777789999998888776 57888766654 3444432 4 688899887764
No 65
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=61.22 E-value=73 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCccEEEecCcH
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
.+.++...+..++++||++.+++.
T Consensus 90 ~~vi~~~ve~~~grvpViaGvg~~ 113 (332)
T 2r8w_A 90 RRAIEAAATILRGRRTLMAGIGAL 113 (332)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECCS
T ss_pred HHHHHHHHHHhCCCCcEEEecCCC
Confidence 344444555556678888776653
No 66
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=59.86 E-value=81 Score=26.81 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCC-CccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q psy15359 135 FEAITLTRHKLEG-KVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQL 213 (281)
Q Consensus 135 ~~~~~~l~~~~~~-~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~ 213 (281)
.+.++...+..++ ++||+..+++.- |+..++.++...++|+|+
T Consensus 63 ~~v~~~~~~~~~g~rvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gada 106 (301)
T 3m5v_A 63 RTCIEIAVETCKGTKVKVLAGAGSNA------------------------------------THEAVGLAKFAKEHGADG 106 (301)
T ss_dssp HHHHHHHHHHHTTSSCEEEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHHcCCCE
Confidence 3444555666667 799998776541 233456666667777777
Q ss_pred EEEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 214 LQLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 214 i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+.+.-|.-...|++. +.-|+++|.+..
T Consensus 107 vlv~~P~y~~~s~~~----l~~~f~~va~a~ 133 (301)
T 3m5v_A 107 ILSVAPYYNKPTQQG----LYEHYKAIAQSV 133 (301)
T ss_dssp EEEECCCSSCCCHHH----HHHHHHHHHHHC
T ss_pred EEEcCCCCCCCCHHH----HHHHHHHHHHhC
Confidence 766655433334422 223455555544
No 67
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=58.40 E-value=14 Score=31.92 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
.++++.+++.|++++++..+.|. .||.+..++++. .+++.++. . +|++.++.+
T Consensus 36 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~----~~~~~~~g---r----vpViaGvg~ 90 (314)
T 3d0c_A 36 DDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVAT----RVTELVNG---R----ATVVAGIGY 90 (314)
T ss_dssp HHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHH----HHHHHhCC---C----CeEEecCCc
Confidence 34556678899999877777663 499998776553 33344432 3 789998877
No 68
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=58.11 E-value=9.1 Score=33.03 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhh-ccCCCCCcEEEEecCCcc
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQL-KQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~-~~~~~~~~~ilH~cG~~~ 266 (281)
.++++.+++.|++++++..+.+. .+|.+..++.+ +.+.+.. +. +|++.|+.++.+
T Consensus 38 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~--------~~~~~~~~gr----~pviaGvg~~~t 95 (307)
T 3s5o_A 38 EENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVV--------SRVRQAMPKN----RLLLAGSGCEST 95 (307)
T ss_dssp HHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHH--------HHHHHTSCTT----SEEEEECCCSSH
T ss_pred HHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHH--------HHHHHHcCCC----CcEEEecCCCCH
Confidence 34556678899999988877764 49998866553 3333321 13 788888877554
No 69
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=57.89 E-value=9.9 Score=32.68 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++.++.+
T Consensus 27 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r----vpviaGvg~~~t 85 (300)
T 3eb2_A 27 MGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVR----ATIEAAQR---R----VPVVAGVASTSV 85 (300)
T ss_dssp HHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHH----HHHHHHTT---S----SCBEEEEEESSH
T ss_pred HHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHH----HHHHHhCC---C----CcEEEeCCCCCH
Confidence 345566678899999877776663 499998776554 33344432 3 788998877654
No 70
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=56.35 E-value=35 Score=29.01 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~ 241 (281)
+..++.++.+++.|||+|-+.. +. +..+|++.=-+-+.|..+.+.
T Consensus 29 ~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~ 77 (280)
T 1eye_A 29 DDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELA 77 (280)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 4566788899999999998886 32 234776665555667777664
No 71
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=55.87 E-value=36 Score=28.78 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTI 240 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l 240 (281)
+..++.++.+++.|||+|.+.. ++ +..+|++.=.+-+.|..+.|
T Consensus 30 ~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l 77 (270)
T 4hb7_A 30 ETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAI 77 (270)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHh
Confidence 5567888899999999999986 33 34699988777778877776
No 72
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=55.27 E-value=34 Score=35.21 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| .+.|....+ +++.+++.. + +++-+|++-+..
T Consensus 692 ~~~~~~a~~~~~~Ga~~i~l~Dt~G-~~~P~~~~~--------lv~~l~~~~-~----~~i~~H~Hnt~G 747 (1150)
T 3hbl_A 692 EYYVKLAKELEREGFHILAIKDMAG-LLKPKAAYE--------LIGELKSAV-D----LPIHLHTHDTSG 747 (1150)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTC-CCCHHHHHH--------HHHHHHHHC-C----SCEEEEECBTTS
T ss_pred HHHHHHHHHHHHcCCCeeeEcCccC-CCCHHHHHH--------HHHHHHHhc-C----CeEEEEeCCCCc
Confidence 5667788888999999998888765 578887544 445555543 4 789999988765
No 73
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=53.86 E-value=15 Score=31.73 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
.++++.+++.|++++++..+.|. .||.+..++++. .+++.+.. . +|++.++..
T Consensus 36 ~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~v~~~~g---r----vpViaGvg~ 90 (316)
T 3e96_A 36 KETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVR----RTVEYVHG---R----ALVVAGIGY 90 (316)
T ss_dssp HHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---S----SEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---C----CcEEEEeCc
Confidence 34556677899999877777663 499998776653 33444432 3 789998853
No 74
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=53.74 E-value=58 Score=27.87 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||+|.+...+ +..+|++.=-+-+.|..+.+.+
T Consensus 63 ~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~ 112 (297)
T 1tx2_A 63 DAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSK 112 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 556778889999999999888532 3458887666666777666654
No 75
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=52.93 E-value=59 Score=27.60 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||.|-+.. +. +..+|++.=.+-+.|..+.+.+
T Consensus 38 ~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~ 87 (282)
T 1aj0_A 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQ 87 (282)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 5567788899999999998886 33 2468887766667777776654
No 76
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=52.01 E-value=1.1e+02 Score=26.08 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC-CE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGA-QL 213 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~-d~ 213 (281)
.+.++...+..++++||++.+++.- ++..++.++...++|+ |+
T Consensus 63 ~~v~~~~~~~~~grvpViaGvg~~~------------------------------------t~~ai~la~~A~~~Ga~da 106 (311)
T 3h5d_A 63 LELFAAVQKVVNGRVPLIAGVGTND------------------------------------TRDSIEFVKEVAEFGGFAA 106 (311)
T ss_dssp HHHHHHHHHHSCSSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHSCCCSE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCcC------------------------------------HHHHHHHHHHHHhcCCCcE
Confidence 4455556677677899988766541 2334577777778886 99
Q ss_pred EEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 214 LQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 214 i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
+.+.-|.-...|++. +.-|+++|.+.. + .|++++.
T Consensus 107 vlv~~P~y~~~s~~~----l~~~f~~va~a~-----~----lPiilYn 141 (311)
T 3h5d_A 107 GLAIVPYYNKPSQEG----MYQHFKAIADAS-----D----LPIIIYN 141 (311)
T ss_dssp EEEECCCSSCCCHHH----HHHHHHHHHHSC-----S----SCEEEEE
T ss_pred EEEcCCCCCCCCHHH----HHHHHHHHHHhC-----C----CCEEEEe
Confidence 877766543345443 233556666554 2 6766664
No 77
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=48.79 E-value=1.2e+02 Score=25.72 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+.++...+..++++||+..+++.- |+..++.++...++|+|++.
T Consensus 72 ~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 115 (304)
T 3l21_A 72 ELLRAVLEAVGDRARVIAGAGTYD------------------------------------TAHSIRLAKACAAEGAHGLL 115 (304)
T ss_dssp HHHHHHHHHHTTTSEEEEECCCSC------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHHcCCCEEE
Confidence 444555566667899998876541 23346777777888999987
Q ss_pred EecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 216 LFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 216 i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
+.-|.-...|++. +.-|+++|.+.. + .|++++.
T Consensus 116 v~~P~y~~~s~~~----l~~~f~~va~a~-----~----lPiilYn 148 (304)
T 3l21_A 116 VVTPYYSKPPQRG----LQAHFTAVADAT-----E----LPMLLYD 148 (304)
T ss_dssp EECCCSSCCCHHH----HHHHHHHHHTSC-----S----SCEEEEE
T ss_pred ECCCCCCCCCHHH----HHHHHHHHHHhc-----C----CCEEEEe
Confidence 7666543345433 223445555444 2 5666654
No 78
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=47.97 E-value=2.4 Score=38.94 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCEEEEecCC-C--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 202 YLVGQAKAGAQLLQLFESN-A--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 202 ~~~~~~e~G~d~i~i~d~~-~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
..+++..+|+++| ..|-| + ..-+| .+|-|-++++|++.+++. | .+ ..+|-||.
T Consensus 39 ~L~~LK~~GVdGV-mvDVWWGiVE~~~P---~~YdWsgY~~L~~mv~~~--G----LKlq~vmSFHqCGg 98 (498)
T 1fa2_A 39 ELKQVKAGGCDGV-MVDVWWGIIEAKGP---KQYDWSAYRELFQLVKKC--G----LKIQAIMSFHQCGG 98 (498)
T ss_dssp HHHHHHHTTCCEE-EEEEEHHHHTCSBT---TBCCCHHHHHHHHHHHHT--T----CEEEEEEECSCBCC
T ss_pred HHHHHHHcCCCEE-EEEeEeeeeccCCC---CccCcHHHHHHHHHHHHc--C----CeEEEEEEeeecCC
Confidence 3456778999998 44533 2 11334 456788999999999987 4 44 45799975
No 79
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=47.67 E-value=2.6 Score=38.73 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCEEEEecCC-C--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 202 YLVGQAKAGAQLLQLFESN-A--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 202 ~~~~~~e~G~d~i~i~d~~-~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
..+++..+|+++| ..|-| + ..-+| .+|-|-++++|++.+++. | .+ ..+|-||.
T Consensus 38 ~L~~LK~~GVdGV-mvDVWWGiVE~~~P---~~YdWsgY~~l~~mv~~~--G----LKlq~vmSFHqCGg 97 (495)
T 1wdp_A 38 QLLQLRAAGVDGV-MVDVWWGIIELKGP---KQYDWRAYRSLLQLVQEC--G----LTLQAIMSFHQCGG 97 (495)
T ss_dssp HHHHHHHTTCCEE-EEEEEHHHHTCSST---TCCCCHHHHHHHHHHHHT--T----CEEEEEEECSCBCC
T ss_pred HHHHHHHcCCCEE-EEEeEeeeeccCCC---CccCcHHHHHHHHHHHHc--C----CeEEEEEEeeecCC
Confidence 3456778999998 44533 2 11334 456788999999999987 4 44 45799975
No 80
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=46.55 E-value=2.8 Score=38.83 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCEEEEecCC-C--CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc----EEEEecCC
Q psy15359 202 YLVGQAKAGAQLLQLFESN-A--EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP----MTIFAKGA 264 (281)
Q Consensus 202 ~~~~~~e~G~d~i~i~d~~-~--~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~----~ilH~cG~ 264 (281)
..+++..+|+++| ..|-| + ..-+| .+|-|-++++|++.+++. | .+ ..+|-||.
T Consensus 36 ~L~~LK~~GVdGV-mvDVWWGiVE~~~P---~~YdWsgY~~L~~mvr~~--G----LKlq~vmSFHqCGg 95 (535)
T 2xfr_A 36 QLRKLVEAGVDGV-MVDVWWGLVEGKGP---KAYDWSAYKQLFELVQKA--G----LKLQAIMSFHQCGG 95 (535)
T ss_dssp HHHHHHHTTCCEE-EEEEEHHHHTCSST---TCCCCHHHHHHHHHHHHT--T----CEEEEEEECSCBCC
T ss_pred HHHHHHHcCCCEE-EEEeEeeeeccCCC---CccCcHHHHHHHHHHHHc--C----CeEEEEEEeeecCC
Confidence 3456778999997 44533 3 11345 456789999999999987 4 44 45799975
No 81
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=46.28 E-value=1.4e+02 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCCccEEEecCcH
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
.+.++...+..++++||++.+++.
T Consensus 87 ~~vi~~~ve~~~grvpViaGvg~~ 110 (343)
T 2v9d_A 87 KAIARFAIDHVDRRVPVLIGTGGT 110 (343)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCSS
T ss_pred HHHHHHHHHHhCCCCcEEEecCCC
Confidence 344444555556678888777654
No 82
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=45.09 E-value=1.2e+02 Score=24.34 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCC---CHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEE
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYL---DLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIF 260 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~i---Sp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH 260 (281)
+|+...+.+ +.+.+.++...+.|+..|.+.-...... +++...+.+...++++.+.+++. | +.+.+|
T Consensus 67 ~~~~r~~~~----~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~lE 136 (254)
T 3ayv_A 67 DPEVRGLTL----RRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTL--G----VRLLLE 136 (254)
T ss_dssp SHHHHHHHH----HHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHH--T----CEEEEE
T ss_pred CHHHHHHHH----HHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhc--C----CEEEEc
Confidence 455444443 3344555555688999886653332222 23444455666888999988887 6 899999
Q ss_pred ecCC
Q psy15359 261 AKGA 264 (281)
Q Consensus 261 ~cG~ 264 (281)
.++.
T Consensus 137 n~~~ 140 (254)
T 3ayv_A 137 NSHE 140 (254)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8874
No 83
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=44.81 E-value=1e+02 Score=26.38 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
.++.++...++|+|++.+.-|.-...|++. +.-|+++|.+.. + .|+++...|..
T Consensus 95 ai~la~~A~~~Gadavlv~~P~y~~~s~~~----l~~~f~~va~a~-----~----lPiilYn~g~~ 148 (316)
T 3e96_A 95 AIELGNAAKAAGADAVMIHMPIHPYVTAGG----VYAYFRDIIEAL-----D----FPSLVYFKDPE 148 (316)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCCSCCCHHH----HHHHHHHHHHHH-----T----SCEEEEECCTT
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCHHH----HHHHHHHHHHhC-----C----CCEEEEeCCCC
Confidence 356677778899999877666544445543 334666776665 2 57777665543
No 84
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=44.77 E-value=49 Score=34.04 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
++.++.++++.++|++.|.+.|..| .+.|....+ +++.+++.. + +++-+|++-+..
T Consensus 709 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~--------lv~~l~~~~-~----~~i~~H~Hnd~G 764 (1165)
T 2qf7_A 709 KYYTNLAVELEKAGAHIIAVKDMAG-LLKPAAAKV--------LFKALREAT-G----LPIHFHTHDTSG 764 (1165)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTC-CCCHHHHHH--------HHHHHHHHC-S----SCEEEEECBTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCccC-CcCHHHHHH--------HHHHHHHhc-C----CeEEEEECCCCC
Confidence 4567778888899999998888766 477777554 444555443 3 788999987765
No 85
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=43.80 E-value=54 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~ 241 (281)
+..++.++.+++.|||+|.+.. +. +..+|++.=-+-+.|..+.+.
T Consensus 46 ~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~ 94 (294)
T 2y5s_A 46 DDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALR 94 (294)
T ss_dssp THHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4456788899999999999886 32 235888877677778777764
No 86
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=43.28 E-value=1.4e+02 Score=24.82 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCc--EEEEecC
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVP--MTIFAKG 263 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~--~ilH~cG 263 (281)
+.+.++...+.|+..|.+.. ....-+++.|+.+ ...++++.+.++++ | +. +.+|.+.
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~-~~~~~~~~~~~~~-~~~l~~l~~~a~~~--G----v~~~l~~En~~ 168 (303)
T 3l23_A 110 WKATAADHAKLGCKYLIQPM-MPTITTHDEAKLV-CDIFNQASDVIKAE--G----IATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECS-CCCCCSHHHHHHH-HHHHHHHHHHHHHT--T----CTTCEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEECC-CCCCCCHHHHHHH-HHHHHHHHHHHHHC--C----CcceEEEccCc
Confidence 34445555688999886642 1112567777554 56889999999987 7 99 9999876
No 87
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=43.02 E-value=1.4e+02 Score=24.46 Aligned_cols=70 Identities=9% Similarity=0.103 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCC---C-CHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEY---L-DLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~---i-Sp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
+|+...+.++ .+.+.++...+.|+..|.+...++.. . +.+...+.+...++++.+.+++. | +.+.+
T Consensus 95 d~~~r~~~~~----~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~--G----v~l~l 164 (287)
T 3kws_A 95 DPAIRKECMD----TMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQH--G----TSVIF 164 (287)
T ss_dssp SHHHHHHHHH----HHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHT--T----CCEEE
T ss_pred CHHHHHHHHH----HHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C----CEEEE
Confidence 5555554444 34445555568899987664333221 1 44555566677889999999887 7 89999
Q ss_pred EecC
Q psy15359 260 FAKG 263 (281)
Q Consensus 260 H~cG 263 (281)
|.+.
T Consensus 165 E~~~ 168 (287)
T 3kws_A 165 EPLN 168 (287)
T ss_dssp CCCC
T ss_pred EecC
Confidence 9774
No 88
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=42.27 E-value=80 Score=27.81 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=50.9
Q ss_pred hhCHHHHHHHHHHHHH------------------------HHHHHHHHHHHhCCCEEEEecCCC--------------CC
Q psy15359 182 YKYPEESKKLLEILTN------------------------VIVDYLVGQAKAGAQLLQLFESNA--------------EY 223 (281)
Q Consensus 182 ~~~Pe~v~~lle~i~d------------------------~~i~~~~~~~e~G~d~i~i~d~~~--------------~~ 223 (281)
..+|+.+.++++.+.+ .+.+.++.+.++|+|+|.+..... +-
T Consensus 195 l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gG 274 (367)
T 3zwt_A 195 LQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGG 274 (367)
T ss_dssp GGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSE
T ss_pred cCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCC
Confidence 5789999999888754 456778888899999987764321 11
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccch
Q psy15359 224 LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGH 269 (281)
Q Consensus 224 iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~ 269 (281)
+|.. -++|...+++..+++..++. +| +-.+|.+...+
T Consensus 275 lSG~----~i~p~a~~~v~~i~~~v~~~---ip--vI~~GGI~s~~ 311 (367)
T 3zwt_A 275 LSGK----PLRDLSTQTIREMYALTQGR---VP--IIGVGGVSSGQ 311 (367)
T ss_dssp EEEG----GGHHHHHHHHHHHHHHTTTC---SC--EEEESSCCSHH
T ss_pred cCCc----ccchhHHHHHHHHHHHcCCC---ce--EEEECCCCCHH
Confidence 3433 24566667777777764320 45 44667665433
No 89
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=41.97 E-value=40 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
.+..|+.++++.++|+|.|++... -|++.+++|..
T Consensus 170 ldeai~Ra~ay~~AGAD~if~~~~----~~~ee~~~~~~ 204 (298)
T 3eoo_A 170 IDAAIERAIAYVEAGADMIFPEAM----KTLDDYRRFKE 204 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCC----CSHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcCCCEEEeCCC----CCHHHHHHHHH
Confidence 567788999999999999865322 37777777655
No 90
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=41.71 E-value=58 Score=28.15 Aligned_cols=71 Identities=13% Similarity=-0.022 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCEEEEec-CCCCCCCHH----HHHHHhHHHHHHHHHHHHHhh--ccCCCCCcEE
Q psy15359 188 SKKLLEILTNVIVDYLVGQAKAG--AQLLQLFE-SNAEYLDLD----LFKEFALPYINTINEKVKAQL--KQMNNDVPMT 258 (281)
Q Consensus 188 v~~lle~i~d~~i~~~~~~~e~G--~d~i~i~d-~~~~~iSp~----~f~ef~~Py~k~l~~~i~~~~--~~~~~~~~~i 258 (281)
..++.+.+.+++...++.+.+.| ++.+++.. ...+++-|. .++. ...++++.++++|+.. |+ .+++
T Consensus 103 ~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~~-l~~~~~~a~~avr~~~~~p~----~~v~ 177 (334)
T 1fob_A 103 LGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSN-IGALLHSGAWGVKDSNLATT----PKIM 177 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHH-HHHHHHHHHHHHHTSCCSSC----CEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHHH-HHHHHHHHHHHHHHhccCCC----CeEE
Confidence 34455566666666666777776 56666653 333333111 2343 3458888999999875 54 6899
Q ss_pred EEecC
Q psy15359 259 IFAKG 263 (281)
Q Consensus 259 lH~cG 263 (281)
+|.+-
T Consensus 178 ~h~~~ 182 (334)
T 1fob_A 178 IHLDD 182 (334)
T ss_dssp EEESC
T ss_pred EEcCC
Confidence 99983
No 91
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=40.70 E-value=73 Score=27.31 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
++.++...++|+|++.+.-|.-...|++. +.-|+++|.++. + .|++++.
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~~~----l~~~f~~va~a~-----~----lPiilYn 144 (314)
T 3d0c_A 96 IELGKSAIDSGADCVMIHQPVHPYITDAG----AVEYYRNIIEAL-----D----APSIIYF 144 (314)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCSCCCHHH----HHHHHHHHHHHS-----S----SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHH----HHHHHHHHHHhC-----C----CCEEEEe
Confidence 36777778899999877766543345433 344556666543 2 5766654
No 92
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=40.18 E-value=46 Score=28.27 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.+. .||.+.. +++++.+.+.. + . ++.++.++.+
T Consensus 21 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr--------~~v~~~~~~~~-~----g-viaGvg~~~t 77 (293)
T 1w3i_A 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEK--------LENLKAVYDVT-N----K-IIFQVGGLNL 77 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHH--------HHHHHHHHTTC-S----C-EEEECCCSCH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHH--------HHHHHHHHHHc-C----C-EEEecCCCCH
Confidence 3445667778999999988887774 3999875 44556666542 2 2 6777766543
No 93
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=39.93 E-value=1.1e+02 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+..++.++...++|+|++.+.-|.-...|.+ =+.-|+++|.+..
T Consensus 86 ~~ai~la~~a~~~Gadavlv~~P~y~~~~~~----~l~~~f~~va~a~ 129 (293)
T 1f6k_A 86 KEAVELGKYATELGYDCLSAVTPFYYKFSFP----EIKHYYDTIIAET 129 (293)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCSSCCCHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCCCHH----HHHHHHHHHHHhC
Confidence 3445777777888999987776654334543 2334566666544
No 94
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=39.90 E-value=45 Score=28.22 Aligned_cols=55 Identities=5% Similarity=-0.072 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
...++++.+++.|++++++..+.|. .+|.+..++ +++.+.+.. + . ++.++.++.+
T Consensus 21 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~--------v~~~~~~~~-~----g-ViaGvg~~~t 77 (288)
T 2nuw_A 21 ALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQ--------NLNALYDVT-H----K-LIFQVGSLNL 77 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHH--------HHHHHTTTC-S----C-EEEECCCSCH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHH--------HHHHHHHHh-C----C-eEEeeCCCCH
Confidence 3445667778999999988887774 399987544 455555542 2 2 6667666443
No 95
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=39.77 E-value=99 Score=26.25 Aligned_cols=44 Identities=18% Similarity=-0.003 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+..++.++...++|+|++.+.-|.-...|++. +.-|++.|.+..
T Consensus 86 ~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~----l~~~f~~va~a~ 129 (300)
T 3eb2_A 86 ADAVAQAKLYEKLGADGILAILEAYFPLKDAQ----IESYFRAIADAV 129 (300)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCSSCCCHHH----HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH----HHHHHHHHHHHC
Confidence 34456777778889999877766543345543 333556666654
No 96
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=39.33 E-value=38 Score=29.14 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
.+..++.++++.++|+|.|++.. .-|++.+++|..
T Consensus 169 ldeAi~Ra~ay~eAGAD~ifi~g----~~~~~ei~~~~~ 203 (302)
T 3fa4_A 169 YEESVARLRAARDAGADVGFLEG----ITSREMARQVIQ 203 (302)
T ss_dssp HHHHHHHHHHHHTTTCSEEEETT----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEeecC----CCCHHHHHHHHH
Confidence 45667888999999999986532 357787777654
No 97
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=38.80 E-value=48 Score=27.99 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAE--YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
.+.++++.+++.|++++++..+.|. .+|.+..++ +++.+.+.. + . ++.++.++.+
T Consensus 20 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~--------v~~~~~~~~-~----g-vi~Gvg~~~t 76 (286)
T 2r91_A 20 LFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKME--------LTDAATSAA-R----R-VIVQVASLNA 76 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHH--------HHHHHHHHC-S----S-EEEECCCSSH
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHH--------HHHHHHHHh-C----C-EEEeeCCCCH
Confidence 3455677778999999988877774 399987544 445555442 2 2 6666666443
No 98
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.48 E-value=1.8e+02 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCCccEEEecCcH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
+.++...+..++++||++.+++.
T Consensus 69 ~v~~~~~~~~~grvpViaGvg~~ 91 (301)
T 1xky_A 69 ALYRHVVSVVDKRVPVIAGTGSN 91 (301)
T ss_dssp HHHHHHHHHHTTSSCEEEECCCS
T ss_pred HHHHHHHHHhCCCceEEeCCCCC
Confidence 34444455556688998877653
No 99
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=38.30 E-value=86 Score=27.70 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh-ccCCCCCcEEEEecCCcc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-KQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~-~~~~~~~~~ilH~cG~~~ 266 (281)
+.++.++++.++ ++.|.+.|..| .+.|..+.+++. .+++.. ++ +++-+|++-+.+
T Consensus 146 ~~~~~~~~~~~~-a~~i~l~DT~G-~~~P~~~~~lv~--------~l~~~~~~~----~~i~~H~Hnd~G 201 (382)
T 2ztj_A 146 DLLAVYEAVAPY-VDRVGLADTVG-VATPRQVYALVR--------EVRRVVGPR----VDIEFHGHNDTG 201 (382)
T ss_dssp HHHHHHHHHGGG-CSEEEEEETTS-CCCHHHHHHHHH--------HHHHHHTTT----SEEEEEEBCTTS
T ss_pred HHHHHHHHHHHh-cCEEEecCCCC-CCCHHHHHHHHH--------HHHHhcCCC----CeEEEEeCCCcc
Confidence 455666677788 99998888766 477888776653 333321 24 788899877654
No 100
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=38.04 E-value=2.1e+02 Score=25.13 Aligned_cols=32 Identities=6% Similarity=-0.046 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLD 227 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~ 227 (281)
|+..++.++...++|+|++.+.-|.-...|.+
T Consensus 140 t~eai~la~~A~~~Gadavlvv~PyY~k~sq~ 171 (360)
T 4dpp_A 140 TREAIHATEQGFAVGMHAALHINPYYGKTSIE 171 (360)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH
Confidence 34455677777788888877666654334443
No 101
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=37.96 E-value=65 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CC---CC----CCCHHHHHHHhHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SN---AE----YLDLDLFKEFALPYINTIN 241 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~---~~----~iSp~~f~ef~~Py~k~l~ 241 (281)
+..++.++.+++.|||+|.+.. +. +. .+|++.=.+-+.|..+.|.
T Consensus 49 ~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~ 101 (314)
T 3tr9_A 49 NSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIK 101 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999998885 22 22 5677665556677665554
No 102
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=37.33 E-value=54 Score=28.23 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFAL 234 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~ 234 (281)
.+..++.++++.++|+|.|++.. .-|++.+++|..
T Consensus 177 ldeAi~Ra~ay~eAGAD~ifi~~----~~~~~~~~~i~~ 211 (307)
T 3lye_A 177 YEECIERLRAARDEGADVGLLEG----FRSKEQAAAAVA 211 (307)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECC----CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecC----CCCHHHHHHHHH
Confidence 45677889999999999986532 357777777654
No 103
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=37.02 E-value=66 Score=28.65 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAE----YLDLD----------LFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~----~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++...++|.|+|-+...-+- ||||. .++.-. -+..+|++++++..|. -++
T Consensus 167 I~~ii~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~-Rf~lEVi~aVr~~vg~----d~v 241 (400)
T 4gbu_A 167 IKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRA-RFTLEVVDALVEAIGH----EKV 241 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHT-HHHHHHHHHHHHHHCG----GGE
T ss_pred HHHHHHHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHH-HHHHHHHHHHHHHcCC----CcE
Confidence 4455566777788888999999988653321 23331 123333 3778999999987654 467
Q ss_pred EEEecC
Q psy15359 258 TIFAKG 263 (281)
Q Consensus 258 ilH~cG 263 (281)
.+-++.
T Consensus 242 gvRlS~ 247 (400)
T 4gbu_A 242 GLRLSP 247 (400)
T ss_dssp EEEECT
T ss_pred EEEecc
Confidence 776654
No 104
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=36.72 E-value=21 Score=31.89 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCEEEEecCCC-CCCCH----------------HHHH--HHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 201 DYLVGQAKAGAQLLQLFESNA-EYLDL----------------DLFK--EFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~-~~iSp----------------~~f~--ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
+.+++..++|||.+=+.--.. .++|| ++|+ ++-+..++.|.++.++. | ++ ++=.
T Consensus 48 ~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~--G----i~-~~st 120 (385)
T 1vli_A 48 ALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK--Q----VI-FLST 120 (385)
T ss_dssp HHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT--T----CE-EECB
T ss_pred HHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHc--C----Cc-EEEc
Confidence 444555779999875432100 11222 3444 36677889999999987 6 43 3323
Q ss_pred cCCcccchhhhcCCCCCC
Q psy15359 262 KGAPKQGHNCYNYSNPML 279 (281)
Q Consensus 262 cG~~~~~~~~~~~~~~~~ 279 (281)
.=+...++.+.+|+.|.+
T Consensus 121 pfD~~svd~l~~~~vd~~ 138 (385)
T 1vli_A 121 VCDEGSADLLQSTSPSAF 138 (385)
T ss_dssp CCSHHHHHHHHTTCCSCE
T ss_pred cCCHHHHHHHHhcCCCEE
Confidence 333346777777776654
No 105
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=36.17 E-value=91 Score=27.47 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCC
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNP 277 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~ 277 (281)
...+.+++++++|+|.|.+ |...+ -+. ...++++.+++..++ ++++.=.+.+......+.+.+.+
T Consensus 100 ~~~e~~~~a~~aGvdvI~i-d~a~G-~~~---------~~~e~I~~ir~~~~~----~~Vi~G~V~T~e~A~~a~~aGaD 164 (361)
T 3r2g_A 100 NELQRAEALRDAGADFFCV-DVAHA-HAK---------YVGKTLKSLRQLLGS----RCIMAGNVATYAGADYLASCGAD 164 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEE-ECSCC-SSH---------HHHHHHHHHHHHHTT----CEEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCCEEEE-eCCCC-CcH---------hHHHHHHHHHHhcCC----CeEEEcCcCCHHHHHHHHHcCCC
Confidence 4567788889999997644 42222 121 235667788876555 66665344444444455555554
Q ss_pred C
Q psy15359 278 M 278 (281)
Q Consensus 278 ~ 278 (281)
-
T Consensus 165 ~ 165 (361)
T 3r2g_A 165 I 165 (361)
T ss_dssp E
T ss_pred E
Confidence 3
No 106
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=35.06 E-value=88 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC---CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN---AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~---~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||+|.+...+ +..+|++.=-+-+.|..+.|.+
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~ 113 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRG 113 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 456678889999999999887522 1458877766667777766654
No 107
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=33.97 E-value=1.5e+02 Score=24.91 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQ 215 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~ 215 (281)
+.++...+..++++||+..+++.- |+..++.++...++|+|++.
T Consensus 57 ~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 100 (289)
T 2yxg_A 57 KVIEKVVDVVNGRVQVIAGAGSNC------------------------------------TEEAIELSVFAEDVGADAVL 100 (289)
T ss_dssp HHHHHHHHHHTTSSEEEEECCCSS------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCcEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 344445555566899988776541 23346677777788888887
Q ss_pred EecCCCCCCCHHHHHHHhHHHHHHHHHH
Q psy15359 216 LFESNAEYLDLDLFKEFALPYINTINEK 243 (281)
Q Consensus 216 i~d~~~~~iSp~~f~ef~~Py~k~l~~~ 243 (281)
+.-|.-...|.+. +.-|+++|.+.
T Consensus 101 v~~P~y~~~s~~~----l~~~f~~ia~a 124 (289)
T 2yxg_A 101 SITPYYNKPTQEG----LRKHFGKVAES 124 (289)
T ss_dssp EECCCSSCCCHHH----HHHHHHHHHHH
T ss_pred ECCCCCCCCCHHH----HHHHHHHHHHh
Confidence 7666543345433 23344555543
No 108
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=33.76 E-value=2.1e+02 Score=23.86 Aligned_cols=59 Identities=12% Similarity=-0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGA 264 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~ 264 (281)
.+.+.++...+.|+..|.+.. .....+++.|+.+ ...++++.+.++++ | +.+.+|.+..
T Consensus 115 ~~~~~i~~A~~lG~~~v~~~~-~~~~~~~~~~~~~-~~~l~~l~~~a~~~--G----v~l~lEn~~~ 173 (305)
T 3obe_A 115 FWKKATDIHAELGVSCMVQPS-LPRIENEDDAKVV-SEIFNRAGEITKKA--G----ILWGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHTCSEEEECC-CCCCSSHHHHHHH-HHHHHHHHHHHHTT--T----CEEEEECCSG
T ss_pred HHHHHHHHHHHcCCCEEEeCC-CCCCCCHHHHHHH-HHHHHHHHHHHHHc--C----CEEEEecCcc
Confidence 344455555688999886542 1122577888655 46889999999887 7 8899988753
No 109
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=33.43 E-value=31 Score=29.93 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCEEEEecC--C-------C-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccch
Q psy15359 200 VDYLVGQAKAGAQLLQLFES--N-------A-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGH 269 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~--~-------~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~ 269 (281)
.+.++.+++.|++.+-++.+ . + ..++++. ++++++.+++. | .++..|+.|... +.
T Consensus 170 ~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~--------l~~~~~~A~~~--g----~~v~~H~~~~~~-i~ 234 (403)
T 3gnh_A 170 RKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEE--------MKAVVDEAHMA--G----IKVAAHAHGASG-IR 234 (403)
T ss_dssp HHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHH--------HHHHHHHHHHT--T----CEEEEEECSHHH-HH
T ss_pred HHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHH--------HHHHHHHHHHC--C----CEEEEEeCCHHH-HH
Confidence 34556667789998766532 1 1 1366665 46788888887 6 899999987643 44
Q ss_pred hhhcCCC
Q psy15359 270 NCYNYSN 276 (281)
Q Consensus 270 ~~~~~~~ 276 (281)
..++.+.
T Consensus 235 ~~~~~g~ 241 (403)
T 3gnh_A 235 EAVRAGV 241 (403)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 4444443
No 110
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=33.33 E-value=1.9e+02 Score=23.38 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
+|+...+.++. +.+.++...+.|++.|.+........+.+...+.+...++++.+.+++. | +.+.+|.
T Consensus 84 ~~~~r~~~~~~----~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~--G----v~l~lE~ 151 (269)
T 3ngf_A 84 ISGREQEFRDN----VDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPH--G----ITVLVEP 151 (269)
T ss_dssp CTTCHHHHHHH----HHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGG--T----CEEEECC
T ss_pred CccHHHHHHHH----HHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C----CEEEEee
Confidence 55544444333 3444555567899987653322223556655666777889999999887 6 8888886
No 111
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=32.97 E-value=67 Score=26.85 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHH
Q psy15359 185 PEESKKLLEI-LTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDL 228 (281)
Q Consensus 185 Pe~v~~lle~-i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~ 228 (281)
||.+.+.... -.+..++.++.+++.|+|.|.+.... ..++++.
T Consensus 12 pdsFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIg~g~-~~v~~~e 55 (262)
T 1f6y_A 12 FGDIKRAIQERDPAPVQEWARRQEEGGARALDLNVGP-AVQDKVS 55 (262)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHHTCSEEEEBCC-----CHHH
T ss_pred chhHHHhhhcCCHHHHHHHHHHHHHCCCcEEEECCCC-CCCChHH
Confidence 5555555544 35677888999999999999887522 2355443
No 112
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=32.91 E-value=60 Score=28.00 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCC---CCCCHHHHHHHhHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFE-SNA---EYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d-~~~---~~iSp~~f~ef~~Py~k~l~~ 242 (281)
+..++.++.+++.|||+|.+.. +.. ..+|++.=.+-+.|..+.|-+
T Consensus 33 ~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~ 82 (314)
T 2vef_A 33 EQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRK 82 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4566788899999999998886 332 247777666666777666543
No 113
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=32.24 E-value=1.9e+02 Score=24.24 Aligned_cols=70 Identities=10% Similarity=-0.051 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLL 214 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i 214 (281)
.+.++...+..++++||+..+++.- |+..++.++...++|+|++
T Consensus 59 ~~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~A~~~Gadav 102 (294)
T 3b4u_A 59 QAILSSFIAAGIAPSRIVTGVLVDS------------------------------------IEDAADQSAEALNAGARNI 102 (294)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCcc------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3444555666667889987776541 2334677777788999998
Q ss_pred EEecCCCCC-CCHHHHHHHhHHHHHHHHHHH
Q psy15359 215 QLFESNAEY-LDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 215 ~i~d~~~~~-iSp~~f~ef~~Py~k~l~~~i 244 (281)
.+.-|.-.. .|++. +.-|+++|.+..
T Consensus 103 lv~~P~y~~~~s~~~----l~~~f~~va~a~ 129 (294)
T 3b4u_A 103 LLAPPSYFKNVSDDG----LFAWFSAVFSKI 129 (294)
T ss_dssp EECCCCSSCSCCHHH----HHHHHHHHHHHH
T ss_pred EEcCCcCCCCCCHHH----HHHHHHHHHHhc
Confidence 776665433 45433 333556666554
No 114
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=32.12 E-value=2.4e+02 Score=24.04 Aligned_cols=76 Identities=9% Similarity=-0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCccEEEecCcHH--HHH---HHHHhCCCCCchHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAPW--TLM---SYMIEGGGSKTMSKSKHWLYK---YPEESKKLLEILTNVIVDYLVGQA 207 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gPf--~~a---~~l~~G~~~~g~e~~~~~l~~---~Pe~v~~lle~i~d~~i~~~~~~~ 207 (281)
+.++++++ .|-++||+.++..+. ..+ ..++ |-. =-+.+...+.. +|+. +.+.-.+...+.++.++
T Consensus 193 ~f~~~~r~-~Gi~vPIi~GImPi~s~~~~~~~~~~~-Gv~--iP~~l~~~l~~~~dd~~~---~~~~Gi~~a~e~~~~L~ 265 (304)
T 3fst_A 193 RFRDRCVS-AGIDVEIIPGILPVSNFKQAKKLADMT-NVR--IPAWMAQMFDGLDDDAET---RKLVGANIAMDMVKILS 265 (304)
T ss_dssp HHHHHHHH-TTCCSCEECEECCCSCHHHHHHHHHHH-TCC--CCHHHHHHHTTCTTCHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCcEEEEecccCCHHHHHHHHHcC-CCc--CCHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHH
Confidence 33344443 355789987765332 222 2344 211 01233333332 4554 34455666667777778
Q ss_pred HhCCCEEEEec
Q psy15359 208 KAGAQLLQLFE 218 (281)
Q Consensus 208 e~G~d~i~i~d 218 (281)
+.|++++.++.
T Consensus 266 ~~gv~GiH~yt 276 (304)
T 3fst_A 266 REGVKDFHFYT 276 (304)
T ss_dssp HTTCCEEEEEC
T ss_pred HCCCCEEEECC
Confidence 88999998875
No 115
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=32.12 E-value=88 Score=27.33 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAE----YLDLD----------LFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~----~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++...++|.|+|-+...-+- ||||. .++.-. -+..+|++++++..|. -++
T Consensus 147 I~~ii~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~-Rf~~Eii~avr~~vg~----~~v 221 (358)
T 4a3u_A 147 IPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRI-RLLKDVTERVIATIGK----ERT 221 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHT-HHHHHHHHHHHHHHCG----GGE
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHH-HHHHHHHHHHHHHcCc----cce
Confidence 4445566777788888999999988643221 23331 123332 3678999999887643 345
Q ss_pred EEEecC
Q psy15359 258 TIFAKG 263 (281)
Q Consensus 258 ilH~cG 263 (281)
.+-++.
T Consensus 222 ~vRls~ 227 (358)
T 4a3u_A 222 AVRLSP 227 (358)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 555544
No 116
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=31.83 E-value=1.7e+02 Score=24.85 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKV 244 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i 244 (281)
+..++.++...++|+|++.+.-|.-...|++. +.-|+++|.+..
T Consensus 98 ~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~----l~~~f~~ia~a~ 141 (304)
T 3cpr_A 98 RTSVELAEAAASAGADGLLVVTPYYSKPSQEG----LLAHFGAIAAAT 141 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH----HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH----HHHHHHHHHHhc
Confidence 34567777778899999877766543345332 334556665543
No 117
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=31.47 E-value=2e+02 Score=23.01 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+.+.+.++...+.|++.|.+..... ...+.+...+.+...++++.+.+++. | +.+.+|..+..
T Consensus 84 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~lEn~~~~ 147 (278)
T 1i60_A 84 TEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPY--G----VKIALEFVGHP 147 (278)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGG--T----CEEEEECCCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc--C----CEEEEEecCCc
Confidence 4445555666688999886643222 12565665666777889999999886 6 89999988754
No 118
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=31.13 E-value=1.8e+02 Score=24.84 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCccEEEecCcHH--HHHHHHHhCCCCCchHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15359 137 AITLTRHKLEGKVPLIGFSGAPW--TLMSYMIEGGGSKTMSKSKHWLY---KYPEESKKLLEILTNVIVDYLVGQAKAGA 211 (281)
Q Consensus 137 ~~~~l~~~~~~~~~i~~~~~gPf--~~a~~l~~G~~~~g~e~~~~~l~---~~Pe~v~~lle~i~d~~i~~~~~~~e~G~ 211 (281)
.++++++ .|=++||+.++..+. ..+..+..-.|..=-+.+...|. .+|+.+ -+.-.+...+.++.+.+.|+
T Consensus 191 f~~~~r~-~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP~~l~~~l~~~~~d~~~~---~~~gi~~a~e~~~~L~~~gv 266 (310)
T 3apt_A 191 FLERARR-AGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAV---LEIGVEHAVRQVAELLEAGV 266 (310)
T ss_dssp HHHHHHH-TTCCSCEECEECCCCCTTHHHHHHHTSCCCCCHHHHHHHHHSTTCHHHH---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-cCCCCeEEEEecccCCHHHHHHHHHcCCCCCCHHHHHHHHhccCCHHHH---HHHHHHHHHHHHHHHHHCCC
Confidence 3344433 354689987765332 22222211111110123333332 345544 33445566777888888899
Q ss_pred CEEEEec
Q psy15359 212 QLLQLFE 218 (281)
Q Consensus 212 d~i~i~d 218 (281)
+++.++.
T Consensus 267 ~GiH~yt 273 (310)
T 3apt_A 267 EGVHFYT 273 (310)
T ss_dssp SEEEEEC
T ss_pred CeEEEeC
Confidence 9998775
No 119
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=30.65 E-value=2.5e+02 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCccEEEecCcH
Q psy15359 136 EAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 136 ~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
+.++...+..++++||+..+++.
T Consensus 65 ~v~~~~~~~~~grvpviaGvg~~ 87 (309)
T 3fkr_A 65 VLTRTILEHVAGRVPVIVTTSHY 87 (309)
T ss_dssp HHHHHHHHHHTTSSCEEEECCCS
T ss_pred HHHHHHHHHhCCCCcEEEecCCc
Confidence 34444555556789998877654
No 120
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=30.37 E-value=1.6e+02 Score=25.01 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVK 245 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~ 245 (281)
+..++.++...++|+|++.+.-|. ...|.+ =+.-|++.|.+...
T Consensus 89 ~~ai~la~~A~~~Gadavlv~~P~-~~~s~~----~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 89 AAMRRLARLSMDAGAAGVMIAPPP-SLRTDE----QITTYFRQATEAIG 132 (313)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCT-TCCSHH----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC-CCCCHH----HHHHHHHHHHHhCC
Confidence 344566667778888887666555 233432 23446666666653
No 121
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=30.25 E-value=2.2e+02 Score=24.61 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCccEEE-ecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15359 133 YVFEAITLTRHKLEGKVPLIG-FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGA 211 (281)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~i~~-~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~ 211 (281)
.+.++++.+|+++++ ..|++ .+..|+|.-++- |+ +. ++ .. -.-|...+.+.+.+-.+.++|+
T Consensus 100 ~v~~air~iK~~~pd-l~vitDvcLc~YT~HGHc-------Gi---l~---~~-g~--v~ND~Tl~~La~~Als~A~AGA 162 (330)
T 1pv8_A 100 PAIEAIHLLRKTFPN-LLVACDVCLCPYTSHGHC-------GL---LS---EN-GA--FRAEESRQRLAEVALAYAKAGC 162 (330)
T ss_dssp HHHHHHHHHHHHSTT-SEEEEEECCC-----------------------------C--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHCCC-eEEEEeeecccccCCCce-------eE---EC---CC-Cc--CccHHHHHHHHHHHHHHHHcCC
Confidence 456788889999876 55665 457999986653 22 11 01 00 2234445555566666778999
Q ss_pred CEEEEec
Q psy15359 212 QLLQLFE 218 (281)
Q Consensus 212 d~i~i~d 218 (281)
|.|.-.|
T Consensus 163 diVAPSd 169 (330)
T 1pv8_A 163 QVVAPSD 169 (330)
T ss_dssp SEEEECC
T ss_pred Ceeeccc
Confidence 9875544
No 122
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=30.24 E-value=81 Score=27.82 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNP 277 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~ 277 (281)
.+.++.++++|+|.|.+ |...+ .+ +...+.++.+++..|+ ++++...+.+......+.+.+.+
T Consensus 110 ~~~~~~lieaGvd~I~i-dta~G--~~--------~~~~~~I~~ik~~~p~----v~Vi~G~v~t~e~A~~a~~aGAD 172 (366)
T 4fo4_A 110 EERVKALVEAGVDVLLI-DSSHG--HS--------EGVLQRIRETRAAYPH----LEIIGGNVATAEGARALIEAGVS 172 (366)
T ss_dssp HHHHHHHHHTTCSEEEE-ECSCT--TS--------HHHHHHHHHHHHHCTT----CEEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHHhCCCCEEEE-eCCCC--CC--------HHHHHHHHHHHHhcCC----CceEeeeeCCHHHHHHHHHcCCC
Confidence 46678889999998754 43222 12 2233455666665444 66666555555444444444433
No 123
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=29.84 E-value=1.2e+02 Score=25.59 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=31.8
Q ss_pred HHHHHHhCCCEEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 203 LVGQAKAGAQLLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 203 ~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
++.+++.|+.+|.+.....+ .++ -|.+..+++.+.+. | +++++|+-.
T Consensus 133 l~~~~~~g~~Gv~l~~~~~~~~l~--------d~~~~p~~~~~~e~--~----lpv~iH~~~ 180 (334)
T 2hbv_A 133 ASRAVAAGHLGIQIGNHLGDKDLD--------DATLEAFLTHCANE--D----IPILVHPWD 180 (334)
T ss_dssp HHHHHHHTCCCEEEESCBTTBCTT--------SHHHHHHHHHHHHT--T----CCEEEECCS
T ss_pred HHHHHHcCCeEEEECCCCCCCCCC--------cHHHHHHHHHHHHC--C----CEEEECCCC
Confidence 33444678888766543333 232 27778888999887 7 899999864
No 124
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=29.08 E-value=2.4e+02 Score=24.65 Aligned_cols=68 Identities=6% Similarity=0.040 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAE----YLDLD----------LFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~----~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++...++|.|+|-+....+- ||||- .++.- ..+..++++++++..|. -++
T Consensus 148 I~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR-~rf~~eiv~aVr~~vg~----~~v 222 (362)
T 4ab4_A 148 INDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENR-ARLLLEVTDAAIEVWGA----QRV 222 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH-HHHHHHHHHHHHHHHCG----GGE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhH-HHHHHHHHHHHHHhcCC----Cce
Confidence 4445556667777888999999977643221 23331 12222 34677888888887532 266
Q ss_pred EEEecCC
Q psy15359 258 TIFAKGA 264 (281)
Q Consensus 258 ilH~cG~ 264 (281)
.+-+.+.
T Consensus 223 ~vRls~~ 229 (362)
T 4ab4_A 223 GVHLAPR 229 (362)
T ss_dssp EEEECTT
T ss_pred EEEeecc
Confidence 6666654
No 125
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.65 E-value=2.4e+02 Score=23.63 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHH
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLD 227 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~ 227 (281)
.++.++...++|+|++.+.-|.-...|++
T Consensus 84 ai~la~~A~~~Gadavlv~~P~y~~~s~~ 112 (292)
T 2vc6_A 84 AIAFVRHAQNAGADGVLIVSPYYNKPTQE 112 (292)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHH
Confidence 35666777778888876666553334543
No 126
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=28.47 E-value=1.1e+02 Score=26.47 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHH----------------
Q psy15359 134 VFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN---------------- 197 (281)
Q Consensus 134 ~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d---------------- 197 (281)
..++.+++.+ .|-+. |-.+++.|.+-.. .++.| ..+..+|+.+.++++.+.+
T Consensus 72 ~~~aA~~a~~-~G~D~-IeIn~gcP~~~~~--~d~~G--------~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~ 139 (350)
T 3b0p_A 72 LAEAARIGEA-FGYDE-INLNLGCPSEKAQ--EGGYG--------ACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEG 139 (350)
T ss_dssp HHHHHHHHHH-TTCSE-EEEEECCCSHHHH--HTTCG--------GGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTT
T ss_pred HHHHHHHHHH-cCCCE-EEECCcCCCCcCc--CCCcc--------hhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCc
Confidence 4455555544 34222 3335566765432 11111 2345788888888888765
Q ss_pred -----HHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCccc
Q psy15359 198 -----VIVDYLVGQAKAGAQLLQLFESNAE-YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQ 267 (281)
Q Consensus 198 -----~~i~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~ 267 (281)
...++++.+.++|+|.|.+..-... .+|+...+ ...|+...++..+++..++ +|+ -..|.+..
T Consensus 140 ~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~-~~~~~~~~~i~~ik~~~~~----iPV--ianGgI~s 208 (350)
T 3b0p_A 140 KETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANR-EIPPLRHDWVHRLKGDFPQ----LTF--VTNGGIRS 208 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEECSCBC-----------CCCCCHHHHHHHHHHCTT----SEE--EEESSCCS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEecCchhcccCccccc-CCCcccHHHHHHHHHhCCC----CeE--EEECCcCC
Confidence 3567788888999999987653221 24443211 1112333445555554323 554 35666643
No 127
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=28.22 E-value=2.5e+02 Score=24.48 Aligned_cols=68 Identities=6% Similarity=0.002 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHH----------HHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAE----YLDLD----------LFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~----~iSp~----------~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
++.+.+...+-++...++|.|+|-+....+- ||||. .+++- .-+..++++++++..+. -++
T Consensus 156 I~~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR-~rf~~evv~aVr~~vg~----~~v 230 (361)
T 3gka_A 156 IPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENR-ARLLLEVVDAAIDVWSA----ARV 230 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH-SHHHHHHHHHHHHHHCG----GGE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhc-HHHHHHHHHHHHHHcCC----CeE
Confidence 3445556667777888999999977643221 23331 12222 23667888888887532 267
Q ss_pred EEEecCC
Q psy15359 258 TIFAKGA 264 (281)
Q Consensus 258 ilH~cG~ 264 (281)
.+-+.++
T Consensus 231 ~vRls~~ 237 (361)
T 3gka_A 231 GVHLAPR 237 (361)
T ss_dssp EEEECTT
T ss_pred EEecccc
Confidence 7766653
No 128
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=28.01 E-value=2.3e+02 Score=22.52 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNA-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
+.+.+.++...+.|+..+.+.-... ...+.+...+.+...++++.+.+++. | +.+.+|.+.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~~E~~~ 146 (260)
T 1k77_A 85 ADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPH--G----KRILVEALS 146 (260)
T ss_dssp HHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGG--T----CEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C----CEEEEEeCC
Confidence 3444555556688999875532221 23566666677777889999999887 6 899998874
No 129
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=27.67 E-value=1.1e+02 Score=27.81 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCEEEEec-CC---CCCCCHHHHHHHhHHHHHHHHH
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFE-SN---AEYLDLDLFKEFALPYINTINE 242 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d-~~---~~~iSp~~f~ef~~Py~k~l~~ 242 (281)
..++.++++++.|||+|.+.. +. +..+|++.=-+-+.|..+.|.+
T Consensus 213 ~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~ 261 (442)
T 3mcm_A 213 QRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKS 261 (442)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 346778899999999998885 33 2358887766667776665543
No 130
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=27.20 E-value=1.8e+02 Score=24.99 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN----AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
+...++++.+++.|||+|.+...+ +...|++.=.+ +++.+.+.. + +|+.+-.|
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~--------vV~~v~~~~-~----vplsI~DT 130 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAE--------VCKAVADAI-D----VPLMIIGC 130 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHH--------HHHHHHHHC-S----SCEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHH--------HHHHHHHhC-C----ceEEEECC
Confidence 456788889999999999887522 22488887555 445554433 4 78777344
No 131
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=27.16 E-value=2.3e+02 Score=23.98 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEec---CCcccc
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK---GAPKQG 268 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c---G~~~~~ 268 (281)
.+...+.+++..+.|.|.|.+. +.+ ++ .|++ -..++++.+++.+ + +|+++|-- |+...+
T Consensus 52 ~~~~~~~~~~~~~sGtDai~VG-S~~--vt--~~~~----~~~~~v~~ik~~~-~----lPvil~fPP~~g~~~~i 113 (286)
T 3vk5_A 52 VTEAVEKAAELTRLGFAAVLLA-STD--YE--SFES----HMEPYVAAVKAAT-P----LPVVLHFPPRPGAGFPV 113 (286)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEE-CSC--CS--SHHH----HHHHHHHHHHHHC-S----SCEEEECCCBTTTBSCC
T ss_pred cHHHHHHHHHHHhcCCCEEEEc-cCC--CC--cchH----HHHHHHHHHHHhC-C----CCEEEECCCCCCCcccc
Confidence 3444455666789999999887 433 33 1222 2356778888854 4 89999877 776543
No 132
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=26.90 E-value=2e+02 Score=23.71 Aligned_cols=50 Identities=16% Similarity=-0.000 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHH-HH----hHHHHHHHHHHHHHh
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFK-EF----ALPYINTINEKVKAQ 247 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~-ef----~~Py~k~l~~~i~~~ 247 (281)
.+.++++...+.|+|.|.+.+.+-.-..++.+. ++ ..|+.+.+.+..++.
T Consensus 41 ~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~ 95 (283)
T 3hkx_A 41 LIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDR 95 (283)
T ss_dssp HHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHh
Confidence 334444555678999987766543223444333 33 346666777777665
No 133
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=26.85 E-value=2.5e+02 Score=22.72 Aligned_cols=61 Identities=7% Similarity=-0.008 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN-AEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
+.+.+.++...+.|+..|.+.... ... +.+.|+.+ ...++++.+.+++. | +.+.+|...+.
T Consensus 102 ~~~~~~i~~a~~lG~~~v~~~~G~~~~~-~~~~~~~~-~~~l~~l~~~a~~~--G----v~l~lE~~~~~ 163 (290)
T 3tva_A 102 AEMKEISDFASWVGCPAIGLHIGFVPES-SSPDYSEL-VRVTQDLLTHAANH--G----QAVHLETGQES 163 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCCCCT-TSHHHHHH-HHHHHHHHHHHHTT--T----CEEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCccc-chHHHHHH-HHHHHHHHHHHHHc--C----CEEEEecCCCC
Confidence 444555556667899988664221 111 55666554 55788999999887 6 88899988643
No 134
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=26.67 E-value=96 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEF 232 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef 232 (281)
.+..++.++++.++|+|.|++-. . -+++.+++|
T Consensus 174 ~~~ai~Ra~ay~eAGAD~i~~e~-~---~~~~~~~~i 206 (305)
T 3ih1_A 174 LDEAIERANAYVKAGADAIFPEA-L---QSEEEFRLF 206 (305)
T ss_dssp HHHHHHHHHHHHHHTCSEEEETT-C---CSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC-C---CCHHHHHHH
Confidence 46678889999999999985532 2 245554444
No 135
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=26.40 E-value=2.6e+02 Score=22.68 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE--ecCCC----CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcE
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQL--FESNA----EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM 257 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i--~d~~~----~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ 257 (281)
+|+...+.++ .+.+.++...+.|+..+.+ ...++ +..+.+...+.+...++++.+.+++. | +.+
T Consensus 79 d~~~r~~~~~----~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--G----v~l 148 (294)
T 3vni_A 79 DPDIRKNAKA----FYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEAC--G----VDF 148 (294)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT--T----CEE
T ss_pred CHHHHHHHHH----HHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C----CEE
Confidence 5555444443 3444555556789998752 22332 13566666777778999999999887 7 899
Q ss_pred EEEecC
Q psy15359 258 TIFAKG 263 (281)
Q Consensus 258 ilH~cG 263 (281)
.+|..+
T Consensus 149 ~lEn~~ 154 (294)
T 3vni_A 149 CLEVLN 154 (294)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999875
No 136
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=25.99 E-value=2.2e+02 Score=24.90 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPM 278 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~ 278 (281)
.+.++.++++|+|.|.+ |...+ .+ ....+.++.+++.. + ++++...+.+......+.+.+.+-
T Consensus 107 ~e~a~~l~eaGad~I~l-d~a~G--~~--------~~~~~~i~~i~~~~-~----~~Vivg~v~t~e~A~~l~~aGaD~ 169 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVL-DSAHG--HS--------LNIIRTLKEIKSKM-N----IDVIVGNVVTEEATKELIENGADG 169 (361)
T ss_dssp HHHHHHHHHTTCSEEEE-CCSCC--SB--------HHHHHHHHHHHHHC-C----CEEEEEEECSHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCcCeEEE-eCCCC--Cc--------HHHHHHHHHHHHhc-C----CcEEEccCCCHHHHHHHHHcCcCE
Confidence 57788889999998754 32222 12 12234455555543 4 677765665555555555555543
No 137
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=25.97 E-value=1.1e+02 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHH------------------HHHHHHHHHHHhhc-cCC
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALP------------------YINTINEKVKAQLK-QMN 252 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P------------------y~k~l~~~i~~~~~-~~~ 252 (281)
++.+.+...+.++...++|.|+|-+....+-++ .+|..| +..++++++++..| +
T Consensus 153 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl-----~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d-- 225 (363)
T 3l5l_A 153 IARVKQDFVDAARRARDAGFEWIELHFAHGYLG-----QSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPEN-- 225 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHH-----HHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTT--
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHH-----HHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCC--
Q ss_pred CCCcEEE
Q psy15359 253 NDVPMTI 259 (281)
Q Consensus 253 ~~~~~il 259 (281)
.++.+
T Consensus 226 --~pV~v 230 (363)
T 3l5l_A 226 --LPLTA 230 (363)
T ss_dssp --SCEEE
T ss_pred --ceEEE
No 138
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=25.74 E-value=1.9e+02 Score=23.25 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc---cchhhhcCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK---QGHNCYNYSN 276 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~---~~~~~~~~~~ 276 (281)
.+.++.+.++|++.+.+.|..+..- ..++..+++..+++.. + +|++.| |.+. ..+.+++.+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~~--------~~~~~~~~i~~i~~~~-~----ipvi~~--ggI~~~~~~~~~~~~Ga 97 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASVE--------KRKTMLELVEKVAEQI-D----IPFTVG--GGIHDFETASELILRGA 97 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSSS--------HHHHHHHHHHHHHTTC-C----SCEEEE--SSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEECCchhhc--------CCcccHHHHHHHHHhC-C----CCEEEe--CCCCCHHHHHHHHHcCC
Confidence 4566777899999998887544321 2234555666666543 4 787765 3333 3445555554
Q ss_pred C
Q psy15359 277 P 277 (281)
Q Consensus 277 ~ 277 (281)
+
T Consensus 98 d 98 (253)
T 1thf_D 98 D 98 (253)
T ss_dssp S
T ss_pred C
Confidence 4
No 139
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=25.66 E-value=1e+02 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK 266 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~ 266 (281)
+...+|++.+.++|...|+.. +++|+.-.+-+...++++++.+++. | ..++.-+-..+.
T Consensus 41 ~~~~~Yi~~a~~~Gf~~IFTS-----L~~~e~~~~~~~~~~~~l~~~a~~~--g----~~vi~DVsp~~~ 99 (385)
T 1x7f_A 41 EKDMAYISAAARHGFSRIFTC-----LLSVNRPKEEIVAEFKEIINHAKDN--N----MEVILDVAPAVF 99 (385)
T ss_dssp HHHHHHHHHHHTTTEEEEEEE-----ECCC--------HHHHHHHHHHHHT--T----CEEEEEECTTCC
T ss_pred HHHHHHHHHHHHCCCCEEEcc-----CCccCCChHHHHHHHHHHHHHHHHC--C----CEEEEECCHHHH
Confidence 344578888889999887443 4567777777788899999999998 7 888888877654
No 140
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*
Probab=25.15 E-value=63 Score=28.33 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCEEEEecC--C-------C-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchh
Q psy15359 201 DYLVGQAKAGAQLLQLFES--N-------A-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHN 270 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~--~-------~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~ 270 (281)
+.++.+++.|++.+-++.+ . + ..++++. ++++++.+++. | +++..|+.|.. .+..
T Consensus 179 ~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~--------l~~~~~~A~~~--g----~~v~~H~~~~~-~i~~ 243 (426)
T 2r8c_A 179 RAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDE--------IRAIVAEAQGR--G----TYVLAHAYTPA-AIAR 243 (426)
T ss_dssp HHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHH--------HHHHHHHHHHT--T----CCEEEEECSHH-HHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHH--------HHHHHHHHHHc--C----CEEEEEeCChH-HHHH
Confidence 4445566788888765532 1 1 1367766 46788888887 6 89999998653 3444
Q ss_pred hhcCCC
Q psy15359 271 CYNYSN 276 (281)
Q Consensus 271 ~~~~~~ 276 (281)
.++.+.
T Consensus 244 al~~G~ 249 (426)
T 2r8c_A 244 AVRCGV 249 (426)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 444443
No 141
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=25.01 E-value=28 Score=30.65 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCEEEEec----C----CC-CCC------CH-HHHHH--HhHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 201 DYLVGQAKAGAQLLQLFE----S----NA-EYL------DL-DLFKE--FALPYINTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d----~----~~-~~i------Sp-~~f~e--f~~Py~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
+.+++..++|+|++=+.- . .+ .+- +. ++|++ +-+..++.|.++.++. | ++ ++-..
T Consensus 39 ~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~--G----i~-~~st~ 111 (349)
T 2wqp_A 39 EMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK--G----MI-FISTL 111 (349)
T ss_dssp HHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT--T----CE-EEEEE
T ss_pred HHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh--C----Ce-EEEee
Confidence 444555779999875431 1 00 021 12 55555 4566778999999987 6 54 33333
Q ss_pred CCcccchhhhcCCCCCC
Q psy15359 263 GAPKQGHNCYNYSNPML 279 (281)
Q Consensus 263 G~~~~~~~~~~~~~~~~ 279 (281)
=+...++.+.+|+.|.+
T Consensus 112 ~d~~svd~l~~~~v~~~ 128 (349)
T 2wqp_A 112 FSRAAALRLQRMDIPAY 128 (349)
T ss_dssp CSHHHHHHHHHHTCSCE
T ss_pred CCHHHHHHHHhcCCCEE
Confidence 33445666666655543
No 142
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=24.89 E-value=1.4e+02 Score=26.31 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCc
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAP 265 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~ 265 (281)
...+|++.+.++|...|+.. +.+|+.-.+-+...++++.+.+++. | ..++.-+-..+
T Consensus 18 ~~~~yi~~a~~~Gf~~IFTS-----L~~~e~~~~~~~~~~~~l~~~a~~~--g----~~vi~DIsp~~ 74 (372)
T 2p0o_A 18 DTIIYIKKMKALGFDGIFTS-----LHIPEDDTSLYRQRLTDLGAIAKAE--K----MKIMVDISGEA 74 (372)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-----ECCC-----CHHHHHHHHHHHHHHH--T----CEEEEEECHHH
T ss_pred HHHHHHHHHHHCCCCEEEcc-----CCccCCChHHHHHHHHHHHHHHHHC--C----CEEEEECCHHH
Confidence 44588888899999987443 4566666667778999999999998 7 78888776644
No 143
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=24.84 E-value=1.1e+02 Score=28.09 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCC
Q psy15359 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNP 277 (281)
Q Consensus 200 i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~ 277 (281)
.+.++.++++|+|+|.+.-..+.. ....++++.+++..|+ +|++...+.+......+.+.|.+
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~~-----------~~~~~~i~~i~~~~~~----~pvi~~~v~t~~~a~~l~~aGad 319 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGNS-----------VYQIAMVHYIKQKYPH----LQVIGGNVVTAAQAKNLIDAGVD 319 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCS-----------HHHHHHHHHHHHHCTT----CEEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCEEEeeccCCcc-----------hhHHHHHHHHHHhCCC----CceEecccchHHHHHHHHHcCCC
Confidence 466777789999998653232221 2345667777776544 67766544444334444444443
No 144
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=24.06 E-value=1.4e+02 Score=24.98 Aligned_cols=48 Identities=6% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhh-ccCCCCCcEEEEec
Q psy15359 207 AKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-KQMNNDVPMTIFAK 262 (281)
Q Consensus 207 ~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~-~~~~~~~~~ilH~c 262 (281)
.+..=|.|.+-+.+...-.++.| .++.+++.+.+++.. |+ +++++|..
T Consensus 90 ~~~~wD~VilQe~S~~~~~~~~~----~~~~~~l~~~ir~~~~p~----ak~il~~T 138 (271)
T 4i8i_A 90 ADEKWDYISVQQASPLSGIYDSY----KASLPELVNYIRERIGKE----TVLMMHQT 138 (271)
T ss_dssp HHSCCSEEEECCCGGGTTCHHHH----HHHHHHHHHHHHTTSCTT----CEEEEEEC
T ss_pred hcCCCCEEEeCCCCCCCCCHHHH----HHHHHHHHHHHHhhcCCC----CEEEEEec
Confidence 35568998777644222234433 788899999999866 67 78888854
No 145
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=24.04 E-value=89 Score=30.33 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCEEEEecCCC-----------CC-CCHHHHHHHhHHH-HHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 201 DYLVGQAKAGAQLLQLFESNA-----------EY-LDLDLFKEFALPY-INTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~~~-----------~~-iSp~~f~ef~~Py-~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
++++.+.+.|.+.|.+-|.|- .. .+|+. +|- ++.+++.+|++ | ++..+++.=
T Consensus 354 ~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~~~d~~k-----FP~Glk~lv~~ih~~--G----lk~GlW~~P 418 (732)
T 2xn2_A 354 TIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKK-----FPNGLGHFADYVHEQ--G----LKFGLWFEP 418 (732)
T ss_dssp HHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCCSBCTTT-----CTTCHHHHHHHHHHT--T----CEEEEEECT
T ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCccccCceeeCchh-----cCccHHHHHHHHHHc--C----CEEEEEeCc
Confidence 344445688999875544442 11 33333 355 89999999997 7 787777653
No 146
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=23.97 E-value=3.3e+02 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCCccEEEecCcH
Q psy15359 135 FEAITLTRHKLEGKVPLIGFSGAP 158 (281)
Q Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~gP 158 (281)
.+.++...+..++++||++.+++.
T Consensus 67 ~~v~~~~~~~~~grvpviaGvg~~ 90 (318)
T 3qfe_A 67 AQLIATARKAVGPDFPIMAGVGAH 90 (318)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCCS
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCC
Confidence 344455556667789999877653
No 147
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=23.92 E-value=1.2e+02 Score=20.16 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=18.7
Q ss_pred hhCHHHHHHHHHHHHHHH---HHHHHHHH
Q psy15359 182 YKYPEESKKLLEILTNVI---VDYLVGQA 207 (281)
Q Consensus 182 ~~~Pe~v~~lle~i~d~~---i~~~~~~~ 207 (281)
...+|.|.++++.+.... .+|++..+
T Consensus 39 ~~~~elI~~A~~~av~~~~~~~~Yi~~IL 67 (83)
T 2i5u_A 39 KEAEQLIVKAIEIAIDANARNYNYINAIL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 346899999999987654 56666664
No 148
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=23.88 E-value=77 Score=28.17 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--------C-CCHHHHHHHhHHH-HHHHHHHHHHhhccCCC
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAE--------Y-LDLDLFKEFALPY-INTINEKVKAQLKQMNN 253 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~--------~-iSp~~f~ef~~Py-~k~l~~~i~~~~~~~~~ 253 (281)
+.+.+.+.++.+.+. .+.++|.+.+.+-|.|.+ . ..|+.| |- +|.+++.+|++ |
T Consensus 24 ~e~~i~~~ad~~~~~------gl~~~G~~~~~iDdgW~~~~r~~~G~~~~~~~kF-----P~Gl~~l~~~i~~~--G--- 87 (397)
T 3a5v_A 24 DEQLILDAAKAIASS------GLKDLGYNYVIIDDCWQKNERESSKTLLADPTKF-----PRGIKPLVDDIHNL--G--- 87 (397)
T ss_dssp CHHHHHHHHHHHHHH------THHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTC-----TTCHHHHHHHHHHT--T---
T ss_pred CHHHHHHHHHHHHHc------CCcccCceEEEECCCcCCCCCCCCCCeEEChhcC-----CcCHHHHHHHHHHc--C---
Confidence 445555554444331 233589998755444421 1 333332 66 89999999997 6
Q ss_pred CCcEEEEec
Q psy15359 254 DVPMTIFAK 262 (281)
Q Consensus 254 ~~~~ilH~c 262 (281)
++..+|..
T Consensus 88 -lk~Giw~~ 95 (397)
T 3a5v_A 88 -LKAGIYSS 95 (397)
T ss_dssp -CEEEEEEE
T ss_pred -CEEEEEec
Confidence 77656543
No 149
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=23.75 E-value=1.6e+02 Score=23.66 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecC
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG 263 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG 263 (281)
..+.++...+.|++.|.+..... +++.|+++....++++.+.+++. | +.+.+|.++
T Consensus 87 ~~~~i~~a~~lG~~~v~~~~g~~---~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~~E~~~ 142 (272)
T 2q02_A 87 TEGLLRDAQGVGARALVLCPLND---GTIVPPEVTVEAIKRLSDLFARY--D----IQGLVEPLG 142 (272)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCS---SBCCCHHHHHHHHHHHHHHHHTT--T----CEEEECCCC
T ss_pred HHHHHHHHHHhCCCEEEEccCCC---chhHHHHHHHHHHHHHHHHHHHc--C----CEEEEEecC
Confidence 34555555678999876542221 23556666477889999999887 6 899999886
No 150
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=23.68 E-value=1.9e+02 Score=25.04 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHH------------------HHHHHHHHHHHhhc-cCC
Q psy15359 192 LEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALP------------------YINTINEKVKAQLK-QMN 252 (281)
Q Consensus 192 le~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P------------------y~k~l~~~i~~~~~-~~~ 252 (281)
++.+.+...+.++...++|.|+|-+....+-++ .+|..| +..++++++++..| +
T Consensus 147 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl-----~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d-- 219 (349)
T 3hgj_A 147 MERILQAFVEGARRALRAGFQVIELHMAHGYLL-----SSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRE-- 219 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHH-----HHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTT--
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccchHH-----HHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCC--
Q ss_pred CCCcEEEEecCC
Q psy15359 253 NDVPMTIFAKGA 264 (281)
Q Consensus 253 ~~~~~ilH~cG~ 264 (281)
.++.+-+..+
T Consensus 220 --~pV~vRls~~ 229 (349)
T 3hgj_A 220 --LPLFVRVSAT 229 (349)
T ss_dssp --SCEEEEEESC
T ss_pred --ceEEEEeccc
No 151
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=23.54 E-value=2e+02 Score=22.79 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEE
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIF 260 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH 260 (281)
...+.++.+.++|+|.+.+.+..+... -.+...+++..+++.. + +|++.|
T Consensus 34 ~~~~~a~~~~~~G~d~i~v~~~~~~~~--------~~~~~~~~i~~i~~~~-~----ipvi~~ 83 (253)
T 1h5y_A 34 DPVEMAVRYEEEGADEIAILDITAAPE--------GRATFIDSVKRVAEAV-S----IPVLVG 83 (253)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTT--------THHHHHHHHHHHHHHC-S----SCEEEE
T ss_pred cHHHHHHHHHHcCCCEEEEEeCCcccc--------CCcccHHHHHHHHHhc-C----CCEEEE
Confidence 345677888899999988876444321 1233445556666543 4 676654
No 152
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=23.49 E-value=68 Score=27.91 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCEEEEecC--CCC--------CCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchh
Q psy15359 201 DYLVGQAKAGAQLLQLFES--NAE--------YLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHN 270 (281)
Q Consensus 201 ~~~~~~~e~G~d~i~i~d~--~~~--------~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~ 270 (281)
+.++.+++.|++.+-++.. .++ .++++. ++++++.+++. | +++..|+.|.. ....
T Consensus 176 ~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~--------l~~~~~~A~~~--g----~~v~~H~~~~~-~i~~ 240 (423)
T 3feq_A 176 LAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDE--------IRAIVDEAEAA--N----TYVMAHAYTGR-AIAR 240 (423)
T ss_dssp HHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHH--------HHHHHHHHHHT--T----CCEEEEEEEHH-HHHH
T ss_pred HHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHH--------HHHHHHHHHHC--C----CeEEEEeCChH-HHHH
Confidence 4455667789888765532 111 256554 56788888887 6 89999998653 2334
Q ss_pred hhcCC
Q psy15359 271 CYNYS 275 (281)
Q Consensus 271 ~~~~~ 275 (281)
.++++
T Consensus 241 ~l~~g 245 (423)
T 3feq_A 241 AVRCG 245 (423)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 44443
No 153
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=23.30 E-value=66 Score=28.62 Aligned_cols=56 Identities=7% Similarity=-0.012 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEE
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~il 259 (281)
+...++++++.++|++.|.+. .+-..=||..|+.+..--++.+.+..++. | ++++-
T Consensus 156 e~a~~~a~~~k~aGa~~vk~q-~fkprts~~~f~gl~~egl~~L~~~~~~~--G----l~~~t 211 (385)
T 3nvt_A 156 EQVAAVAESIKAKGLKLIRGG-AFKPRTSPYDFQGLGLEGLKILKRVSDEY--G----LGVIS 211 (385)
T ss_dssp HHHHHHHHHHHHTTCCEEECB-SSCCCSSTTSCCCCTHHHHHHHHHHHHHH--T----CEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEcc-cccCCCChHhhcCCCHHHHHHHHHHHHHc--C----CEEEE
Confidence 345566777778999987432 21111123333333444556777777766 6 76554
No 154
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=23.20 E-value=1.8e+02 Score=25.13 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcc--cchhhhcCCCCCC
Q psy15359 206 QAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPK--QGHNCYNYSNPML 279 (281)
Q Consensus 206 ~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~--~~~~~~~~~~~~~ 279 (281)
+.+.|+..|.+...+.... + .-.+++.++++.+++. + ..+. -..|... .+..|.++|.+.+
T Consensus 111 ~~~~g~~~i~~~gg~~~p~-~-----~~~~~l~~ll~~ik~~--g----~~i~-~t~G~l~~e~l~~L~~aGvd~v 173 (369)
T 1r30_A 111 AKAAGSTRFCMGAAWKNPH-E-----RDMPYLEQMVQGVKAM--G----LEAC-MTLGTLSESQAQRLANAGLDYY 173 (369)
T ss_dssp HHHTTCSEEEEEECCSSCC-T-----TTHHHHHHHHHHHHHT--T----SEEE-EECSSCCHHHHHHHHHHCCCEE
T ss_pred HHHcCCcEEEEEeCCCCCC-c-----CCHHHHHHHHHHHHHc--C----CeEE-EecCCCCHHHHHHHHHCCCCEE
Confidence 3467888887765432111 1 1246778888888876 4 5543 3667543 4667777776654
No 155
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=23.07 E-value=96 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESN 220 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~ 220 (281)
+..++.++.+++.|||.|.+...+
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s 57 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGP 57 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCc
Confidence 566788899999999999887544
No 156
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=22.91 E-value=1.7e+02 Score=25.15 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEec-CCCCCCCH----HHHHHHhHHHHHHHHHHHHHhh--ccCCCCCcEEEE
Q psy15359 190 KLLEILTNVIVDYLVGQAKAG--AQLLQLFE-SNAEYLDL----DLFKEFALPYINTINEKVKAQL--KQMNNDVPMTIF 260 (281)
Q Consensus 190 ~lle~i~d~~i~~~~~~~e~G--~d~i~i~d-~~~~~iSp----~~f~ef~~Py~k~l~~~i~~~~--~~~~~~~~~ilH 260 (281)
++.+.+.+++.+.++.+.+.| ++.+++.. ...+++.| ..++. ...+++..++.+++.. |+ .++++|
T Consensus 104 ~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~-~~~l~~~~~~avR~~~~~p~----~~v~ih 178 (332)
T 1hjs_A 104 NLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWAN-IARLLHSAAWGIKDSSLSPK----PKIMIH 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHH-HHHHHHHHHHHHHTSCCSSC----CEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHH-HHHHHHHHHHHHHHhccCCC----CeEEEE
Confidence 334444555555566666776 55555543 22222211 12333 3457788889999875 44 688999
Q ss_pred ecC
Q psy15359 261 AKG 263 (281)
Q Consensus 261 ~cG 263 (281)
.+-
T Consensus 179 ~~~ 181 (332)
T 1hjs_A 179 LDN 181 (332)
T ss_dssp ESC
T ss_pred eCC
Confidence 873
No 157
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=21.97 E-value=2.8e+02 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESNAE 222 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~~~ 222 (281)
..+.++.+.++|+|.|-+.-|.++
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPfSD 57 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPFSD 57 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC
Confidence 567778888999999877645543
No 158
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=21.62 E-value=2.4e+02 Score=23.89 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCC--CCC------CCHHHHHHHhHHHHHHHHHHHHHhhcc
Q psy15359 199 IVDYLVGQAKAGAQLLQLFESN--AEY------LDLDLFKEFALPYINTINEKVKAQLKQ 250 (281)
Q Consensus 199 ~i~~~~~~~e~G~d~i~i~d~~--~~~------iSp~~f~ef~~Py~k~l~~~i~~~~~~ 250 (281)
..+-++++.++|+|.|.+.-++ +++ +|.+. ...+.+++++++++..|+
T Consensus 172 ~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~----~~e~i~~i~~a~~~vnpd 227 (286)
T 2p10_A 172 SPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDD----CVSLINECIEAARTIRDD 227 (286)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCC---------CCCHHH----HHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHH----hHHHHHHHHHHHHHhCCC
Confidence 4566778889999998665443 222 45443 235778999999988554
No 159
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=21.61 E-value=2.3e+02 Score=23.67 Aligned_cols=43 Identities=19% Similarity=-0.035 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCC-CHHHHHHHhHHHHHHHHH
Q psy15359 196 TNVIVDYLVGQAKAGAQLLQLFESNAEYL-DLDLFKEFALPYINTINE 242 (281)
Q Consensus 196 ~d~~i~~~~~~~e~G~d~i~i~d~~~~~i-Sp~~f~ef~~Py~k~l~~ 242 (281)
|+..++.++...++|+|++.+.-|.-... |.+ =+.-|+++|.+
T Consensus 74 t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~----~l~~~f~~va~ 117 (283)
T 2pcq_A 74 LPQAEGALLEAKAAGAMALLATPPRYYHGSLGA----GLLRYYEALAE 117 (283)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHH----HHHHHHHHHhc
Confidence 45566777778888999887665543222 332 23335566665
No 160
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.15 E-value=1.4e+02 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHH
Q psy15359 197 NVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYIN 238 (281)
Q Consensus 197 d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k 238 (281)
+..++.++.+++.|||+|.+.... ..++.+.=-+.+.|..+
T Consensus 37 ~~a~~~A~~~v~~GAdiIDIg~g~-~~v~~~eem~rvv~~i~ 77 (300)
T 3k13_A 37 DEALSIARQQVEDGALVIDVNMDD-GLLDARTEMTTFLNLIM 77 (300)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHHHHHHHHH
Confidence 456788899999999999887532 34665443333455554
No 161
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=20.73 E-value=1.5e+02 Score=27.07 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEecCCcccchhhhcCCCC
Q psy15359 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNP 277 (281)
Q Consensus 198 ~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~ 277 (281)
...+.+++++++|+|.|.+ |...+ - .+...+.++.+++..|+ ++++.-.+.+......+.+.+.+
T Consensus 229 ~~~~~a~~l~~aG~d~I~i-d~a~g-~---------~~~~~~~v~~i~~~~p~----~~Vi~g~v~t~e~a~~l~~aGaD 293 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVV-DTAHG-H---------SKGVIERVRWVKQTFPD----VQVIGGNIATAEAAKALAEAGAD 293 (490)
T ss_dssp THHHHHHHHHHTTCSEEEE-ECSCC-S---------BHHHHHHHHHHHHHCTT----SEEEEEEECSHHHHHHHHHTTCS
T ss_pred chHHHHHHHhhcccceEEe-cccCC-c---------chhHHHHHHHHHHHCCC----ceEEEeeeCcHHHHHHHHHcCCC
Confidence 3456788889999998755 43332 1 22344666677766544 56666334443344455555554
No 162
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=20.68 E-value=1.4e+02 Score=22.71 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Q psy15359 179 HWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQL 216 (281)
Q Consensus 179 ~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i 216 (281)
.-.+++|+.+.++++.=-+.+.+.++++++.|++.|..
T Consensus 41 ~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~ 78 (159)
T 1ass_A 41 KVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLC 78 (159)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred eEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEE
Confidence 45678899999999999999999999999999998643
No 163
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=20.53 E-value=1.7e+02 Score=27.31 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEecCCCCCCC-HHHHHHH
Q psy15359 185 PEESKKLLEI-LTNVIVDYLVGQAKAGAQLLQLFESNAEYLD-LDLFKEF 232 (281)
Q Consensus 185 Pe~v~~lle~-i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iS-p~~f~ef 232 (281)
|+.+.+.+.. -.+..++.++.+++.|||+|.+. +....++ ++.++++
T Consensus 327 ~dsf~~~~~~~~~~~a~~~A~~~v~~GAdiIDIg-pg~~~v~~~ee~~rv 375 (566)
T 1q7z_A 327 RKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVN-FGIESQIDVRYVEKI 375 (566)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEE-CSSGGGSCHHHHHHH
T ss_pred ChhHHHHhhcCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHH
Confidence 5555554433 34677888999999999999887 3222344 4444443
No 164
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=20.53 E-value=1e+02 Score=26.90 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=29.5
Q ss_pred HHhCCCEEEEecCCCC--------C-CCHHHHHHHhHHH-HHHHHHHHHHhhccCCCCCcEEEEec
Q psy15359 207 AKAGAQLLQLFESNAE--------Y-LDLDLFKEFALPY-INTINEKVKAQLKQMNNDVPMTIFAK 262 (281)
Q Consensus 207 ~e~G~d~i~i~d~~~~--------~-iSp~~f~ef~~Py-~k~l~~~i~~~~~~~~~~~~~ilH~c 262 (281)
.++|.+.+.+-|.|.+ + .+|+.| |- +|.+++++|++ | ++..+|..
T Consensus 41 ~~~G~~~v~iDdgW~~~~rd~~G~~~~~~~~F-----P~Gl~~l~~~ih~~--G----lk~Giw~~ 95 (362)
T 1uas_A 41 AKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTF-----PSGIKALADYVHAK--G----LKLGIYSD 95 (362)
T ss_dssp HHHTCCEEECCSSCBCSSCCTTSCCCBCTTTC-----TTCHHHHHHHHHHT--T----CEEEEEEE
T ss_pred hhcCCcEEEECCCcCCCCCCCCCCeeEChhcc-----CccHHHHHHHHHHC--C----CEeEEEee
Confidence 6789998755444421 1 333332 55 89999999997 6 77666654
No 165
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=20.20 E-value=3.3e+02 Score=21.62 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-C-CCCCHHHHHHHhHHHHHHHHHHHHHhhccCCCCCcEEEEe
Q psy15359 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESN-A-EYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFA 261 (281)
Q Consensus 184 ~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~-~-~~iSp~~f~ef~~Py~k~l~~~i~~~~~~~~~~~~~ilH~ 261 (281)
+|+...+.++ .+.+.++...+.|+..+.+.-.. . +..+.+.-.+.+...++++.+.+++. | +.+.+|.
T Consensus 74 d~~~r~~~~~----~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--g----v~l~lE~ 143 (275)
T 3qc0_A 74 DASGREKAID----DNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAA--G----VPLAIEP 143 (275)
T ss_dssp SHHHHHHHHH----HHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHH--T----CCEEECC
T ss_pred CHHHHHHHHH----HHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc--C----CEEEEeE
Confidence 4554444444 33445555567899987665321 1 12455555667777899999999887 7 8999996
Q ss_pred c
Q psy15359 262 K 262 (281)
Q Consensus 262 c 262 (281)
.
T Consensus 144 ~ 144 (275)
T 3qc0_A 144 L 144 (275)
T ss_dssp C
T ss_pred C
Confidence 4
Done!