RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15359
(281 letters)
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 447 bits (1153), Expect = e-159
Identities = 158/265 (59%), Positives = 195/265 (73%), Gaps = 1/265 (0%)
Query: 1 MSSVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQ 60
M + FP LKND LRAA GEE D P+W MRQAGRYLPEFRE R+ DFF+ C+
Sbjct: 1 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 61 TPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKK 120
+PE E+TLQP+RRF LDA+IIFS ILV+PQALGM V M P GP PEPL +DL++
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120
Query: 121 LKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHW 180
L+ P V EL YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K W
Sbjct: 121 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180
Query: 181 LYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTI 240
LY+ P+ S +LL ILT+ +V YLVGQ AGAQ LQLFES+A +L LF +FALPYI +
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240
Query: 241 NEKVKAQLKQMN-NDVPMTIFAKGA 264
++VKA+L++ VPM IFAK
Sbjct: 241 AKQVKARLREAGLAPVPMIIFAKDG 265
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 424 bits (1092), Expect = e-150
Identities = 97/256 (37%), Positives = 156/256 (60%), Gaps = 8/256 (3%)
Query: 9 MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEI 68
M+ N+ L+AARGE+ D P+W MRQAGR PE+R+L+ K+ F I PEL A +
Sbjct: 7 MSKRETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYV 66
Query: 69 TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVY 128
T P+ ++ +DA+I++ DI+ ++G+ VE+K +GPV+ +P+ D++KL D
Sbjct: 67 TRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQI-DPE 125
Query: 129 KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEES 188
+++ YV E I L ++ VPLIGFSGAP+TL SYM EGG SK +K+K ++Y P+
Sbjct: 126 QDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAW 184
Query: 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL 248
L+ L ++I+ Y+ Q KAGA+ +Q+F+S L+ ++ + P +N I ++ +
Sbjct: 185 NLLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE- 243
Query: 249 KQMNNDVPMTIFAKGA 264
+VP+ +F GA
Sbjct: 244 -----NVPLIMFGVGA 254
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 422 bits (1087), Expect = e-150
Identities = 110/254 (43%), Positives = 159/254 (62%), Gaps = 4/254 (1%)
Query: 12 PPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITL 70
LKNDR LRA + VD P+W+MRQAGRYLPE++ R++ DF ++C+ ELA E+TL
Sbjct: 2 TELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTL 61
Query: 71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
QP+RR+ LDA+I+FSDIL +P A+G+ + + GP P+ D+ KL P D E
Sbjct: 62 QPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIP-DPEDE 120
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
L YV A+ RH+L+G+VPLIGFSG+PWTL +YM+EGG SK + K +Y P+
Sbjct: 121 LGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA 180
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
LL+ L + YL Q KAGAQ + +F++ L +++F+L Y++ I + + +
Sbjct: 181 LLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLR--EN 238
Query: 251 MNNDVPMTIFAKGA 264
VP+T+F KG
Sbjct: 239 DGRRVPVTLFTKGG 252
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 418 bits (1077), Expect = e-148
Identities = 89/258 (34%), Positives = 146/258 (56%), Gaps = 6/258 (2%)
Query: 8 KMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFF-TICQTPELAA 66
+ LL A RG+EV++ P+W+MRQAGRY+ ++ L K+ F + +L
Sbjct: 4 EPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVV 63
Query: 67 EITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVD 126
EI+LQP + F D I+FSDIL + + ++ GPV+ +PL D++K++
Sbjct: 64 EISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREF-I 122
Query: 127 VYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPE 186
K + YV EA+T+ R ++ + ++GF GAP+TL SY++EGG SK +K K + P+
Sbjct: 123 PEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPK 182
Query: 187 ESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKA 246
LL+ + Y+ QA +GAQ +Q+F+S A L F+EF+LPY+ I + VK
Sbjct: 183 VLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKL 242
Query: 247 QLKQMNNDVPMTIFAKGA 264
+ ++P+ ++A G+
Sbjct: 243 T----HPNLPLILYASGS 256
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 416 bits (1073), Expect = e-147
Identities = 101/261 (38%), Positives = 142/261 (54%), Gaps = 9/261 (3%)
Query: 10 TFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEI 68
L ND LRA E D PIW+MRQAGRYLPE+ R++ F + + P+ A E+
Sbjct: 5 MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEV 64
Query: 69 TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVY 128
TLQP+ RF LDA+I+FSDIL IP A+G+ ++ GP P+ D+ KL P D+
Sbjct: 65 TLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVP-DIG 123
Query: 129 KELNYVFEAITLTRHKL-----EGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYK 183
L YV +A+ R L +VPLIGFSG+PWTL YM+EGGGS K Y
Sbjct: 124 ATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYA 183
Query: 184 YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEK 243
P+ ++L++ + YL Q +AGAQ + +F++ L ++ F+L YI + +
Sbjct: 184 RPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQ 243
Query: 244 VKAQLKQMNNDVPMTIFAKGA 264
+K + VP F KG
Sbjct: 244 LKR--EHDGARVPAIAFTKGG 262
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 392 bits (1010), Expect = e-138
Identities = 100/252 (39%), Positives = 159/252 (63%), Gaps = 13/252 (5%)
Query: 14 LKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQP 72
KND LLR+ RGE + + P+W+MRQAGRY+PE+R++R++ +F +C+ +LA EI+L P
Sbjct: 2 PKNDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLP 61
Query: 73 IRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELN 132
++ +DA IIFSDILV + LG+ VE GP L + LK +
Sbjct: 62 LKILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSG----KVSDLKKYDP--SQNA 115
Query: 133 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 192
YV+E I + + + +VP+IGF+GAP+TL+SY+IEGG SK +K ++++ P+E K+L+
Sbjct: 116 YVYEIIKRVK-EAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLM 174
Query: 193 EILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMN 252
+ILT ++ YL Q KAGA ++Q+F+S L L+ + E+ PY+N + ++K
Sbjct: 175 DILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF----- 229
Query: 253 NDVPMTIFAKGA 264
+D P+ F +G+
Sbjct: 230 SDTPVIYFFRGS 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 7e-08
Identities = 56/288 (19%), Positives = 86/288 (29%), Gaps = 102/288 (35%)
Query: 11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAG------RYLPEFREL--RSKH---DFFTIC 59
F N L RA ++ G Y E R+L D
Sbjct: 137 FDKKSNSALFRAVGEGNAQ-----LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI--- 188
Query: 60 QTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLK 119
+ +AE TL + R LDA +F+ L I + L P+ P +D
Sbjct: 189 ---KFSAE-TLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNTP--------DKD-- 229
Query: 120 KLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKH 179
Y L + I+ PLIG L Y++ K + +
Sbjct: 230 --------Y--LLSI--PISC---------PLIGVI----QLAHYVVTA---KLLGFT-- 259
Query: 180 WLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNA-EYLDLDLFKEFALPYIN 238
P E + L+ T + A A + F + + + + LF +I
Sbjct: 260 -----PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LF------FIG 307
Query: 239 TINEKVKAQLKQMNNDVPMTIFAK------GAPKQGHNCYNYSNPMLS 280
V+ N +P +I G P +PMLS
Sbjct: 308 -----VRCYEAYPNTSLPPSILEDSLENNEGVP----------SPMLS 340
Score = 34.6 bits (79), Expect = 0.040
Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 76/180 (42%)
Query: 18 RLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFN 77
R +A G + +IP + R+L+ + F + A+ P F+
Sbjct: 394 RKAKAPSGLDQSRIP---FSE--------RKLKFSNRFLPV------AS-----P---FH 428
Query: 78 LDASIIFSDILVIPQALGMVVE--MKPAVGPVLPEPLVIP-------EDLKKLKT----- 123
S +LV A ++ + +K V + + IP DL+ L
Sbjct: 429 -------SHLLV--PASDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 124 --------PVDVYKELNYVFEAITLTR--HKLE---GKVPLIGFSGAPWTLMSYMIEGGG 170
PV +E T + H L+ G +G L +G G
Sbjct: 479 IVDCIIRLPVK--------WETTTQFKATHILDFGPGGASGLG------VLTHRNKDGTG 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 53/300 (17%), Positives = 87/300 (29%), Gaps = 98/300 (32%)
Query: 3 SVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLP--------EFRELRSKHD 54
S+ MT P + LL +P R+ P R+ + D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----REVLTTNPRRLSIIAESIRDGLATWD 345
Query: 55 FFTICQTPELAAEI-----TLQP--IRRFNLDASIIFSDILVIPQALGMV-VEMKPAVGP 106
+ +L I L+P R+ S+ + L ++ ++ +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 107 VLPEPLV---------------IP----------EDLKKL-KTPVDVYKEL--------- 131
V+ L IP E+ L ++ VD Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 132 -----NYVF-------------EAITLTRHK------LEGKVPLIGFSGAPWTLMSYMIE 167
Y + E +TL R LE K I W ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILN 522
Query: 168 GGGSKTMSKSKHWLYK-YPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDL 226
T+ + K YK Y ++ E L N I+D+L K L+ ++Y DL
Sbjct: 523 -----TLQQLK--FYKPYICDNDPKYERLVNAILDFLP---KIEENLI-----CSKYTDL 567
Score = 33.7 bits (76), Expect = 0.067
Identities = 48/353 (13%), Positives = 96/353 (27%), Gaps = 110/353 (31%)
Query: 17 DRLLRAARGEEVDKI---P---------IWIMRQAG-RYLPEFRE--LRSKHDFF----- 56
D EE+D I W + + +F E LR + F
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 57 TICQTPELAAEITLQPIRRFNLDASIIFSD--------ILVIPQAL------------GM 96
T + P + + ++ R D + F+ L + QAL G+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 97 -----------------VVEMKP------AVGPVLPEPLVIPEDLKKLKTPVD-VYKELN 132
V + P + E L+KL +D + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRS 217
Query: 133 YVFEAITLTRHKLEGKVPLIGFSGAP-----------W-------------TLM------ 162
I L H ++ ++ + P L+
Sbjct: 218 DHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 163 -SYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGA-QLLQLFESN 220
+ + + +S H + P+E K LL + L + + L +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--- 333
Query: 221 AEYL--DLDLFKEFALPYINTINEKVKAQLKQMNND------VPMTIFAKGAP 265
AE + L + + + + +++ L + +++F A
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Score = 32.5 bits (73), Expect = 0.19
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 25/99 (25%)
Query: 183 KYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLF-------------------ESNAEY 223
K ++ K IL+ +D+++ A + L+LF N ++
Sbjct: 36 KDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 224 LDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAK 262
L + E P + T Q ++ ND +FAK
Sbjct: 94 LMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQ--VFAK 128
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 34.0 bits (79), Expect = 0.043
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
+ + D+ + P+D+ +NY
Sbjct: 261 FLVDWFAEQGATVPIQDGDMDIIGEPIDMIG-INY 294
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 34.1 bits (79), Expect = 0.043
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ +G LP PE+ + D Y +N+ RH+
Sbjct: 273 SMRKQLGDRLPT--FTPEERALVHGSNDFYG-MNHYTS--NYIRHRSSPASADDTVGNVD 327
Query: 159 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+ G +T S WL + L ++
Sbjct: 328 VLFTNKQGNCIGPETQS---PWLRPCAAGFRDFLVWISK 363
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 34.0 bits (79), Expect = 0.049
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
E+ L P D+ + +D +NY
Sbjct: 269 ELHHIYEQNLGAFTTQPGDMDIISRDIDFLG-INY 302
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 31.8 bits (73), Expect = 0.24
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ V LP+ +D +KLK D +NY T + ++ + +
Sbjct: 313 SMRELVKGRLPK--FSADDSEKLKGCYDFIG-MNYYTA--TYVTNAVKSNSEKLSYETDD 367
Query: 159 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 197
++ G W + P KLL
Sbjct: 368 QVTKTFERNQKPIGHALYG---GWQHVVPWGLYKLLVYTKE 405
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 30.9 bits (71), Expect = 0.47
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 99 EMKPAVGPVLPE-PLVIPEDLKKLKTPVDVYKELNY 133
+M G L V P D++ ++ P D +NY
Sbjct: 269 DMVEWYGTYLNGLDFVQPGDMELIQQPGDFLG-INY 303
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 30.6 bits (70), Expect = 0.51
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ VG LP+ E K +K D LNY + ++
Sbjct: 309 SMRGLVGNRLPQ--FTKEQSKLVKGAFDFIG-LNYYTA--NYADNLPPSNGLNNSYTTDS 363
Query: 159 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 197
++ + G G + S WLY YP+ + LL +
Sbjct: 364 RANLTGVRNGIPIGPQAASP---WLYVYPQGFRDLLLYVKE 401
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 30.6 bits (70), Expect = 0.59
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ V LP+ E+ K+L D LNY ++ P I
Sbjct: 294 SMRYLVRKRLPK--FSTEESKELTGSFDFLG-LNYYSSYYAAKAPRIPNARPAIQTDSLI 350
Query: 159 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+ + G S WL YP+ +KLL + N
Sbjct: 351 NATFEHNGKPLGPMAAS---SWLCIYPQGIRKLLLYVKN 386
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 30.6 bits (70), Expect = 0.65
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ V LP+ PE + +K D +N + + + + +S
Sbjct: 288 IMQDLVKDRLPK--FTPEQARLVKGSADYIG-INQYTA--SYMKGQQLMQQTPTSYSADW 342
Query: 159 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+ G G + S WLY P + +
Sbjct: 343 QVTYVFAKNGKPIGPQANSN---WLYIVPWGMYGCVNYIKQ 380
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 30.3 bits (69), Expect = 0.65
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ +G LP E+ +KL + D+ LNY ++H +
Sbjct: 347 SMRSLIGDRLPM--FTKEEQEKLASSCDIMG-LNYYTS--RFSKHVDMSPDFTPTLNTDD 401
Query: 159 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 197
S G+ + +W+Y YP+ LL I+
Sbjct: 402 AYASSETTGSDGNDIGPITGTYWIYMYPKGLTDLLLIMKE 441
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 30.1 bits (69), Expect = 0.83
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
M + +P ++ D++ + P+D +NY
Sbjct: 261 FMLDWYENLGYKPPIVDGDMELIHQPIDFIG-INY 294
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 30.2 bits (69), Expect = 0.83
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
+ LPE +D+ +++ +D LNY
Sbjct: 285 LVLEFAREYLPE--NYKDDMSEIQEKIDFVG-LNY 316
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 29.9 bits (68), Expect = 0.89
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ + +P ++ +KL D+ +NY T ++H +
Sbjct: 350 SMRVSARDRVPY--FKEKEQEKLVGSYDMIG-INYYTS--TFSKHIDLSPNNSPVLNTDD 404
Query: 159 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 197
G+ + W+ YP+ +L + N
Sbjct: 405 AYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKN 444
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 29.8 bits (68), Expect = 1.0
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
+M P + E ++ D +NY
Sbjct: 262 DMIKIFSDTNIMPELPKELFTEVFETSDFLG-INY 295
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 29.6 bits (67), Expect = 1.3
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
MK VG LP+ PE K LK D LNY + + FS
Sbjct: 315 SMKKFVGSRLPK--FSPEQSKMLKGSYDFVG-LNYYTA--SYVTNASTNSSGSNNFSYNT 369
Query: 159 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 197
++Y + G +S WL YPE +K+L
Sbjct: 370 DIHVTYETDRNGVPIGPQSGSDWLLIYPEGIRKILVYTKK 409
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 29.0 bits (66), Expect = 1.6
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
+K +G LPE PE+++ +K D + LN L + ++
Sbjct: 272 RIKKILGDRLPE--FTPEEIELVKGSSDFFG-LNTYTT--HLVQDGGSDELA----GFVK 322
Query: 159 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
G+++ WL Y + LL L
Sbjct: 323 TGHTRADGTQLGTQSDM---GWLQTYGPGFRWLLNYLWK 358
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase,
protease; 1.50A {Synechocystis SP}
Length = 291
Score = 28.6 bits (63), Expect = 2.0
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 140 LTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVI 199
+ + G++ L G S + +MI GG S W + + L I+ ++
Sbjct: 137 IRQRVHNGEISLAGTSAGAAVMGHHMIAGGSSGE------WPNRALVDMAVGLGIVPEIV 190
Query: 200 VDYLVGQAKAGAQLLQLFESNAEYLDL 226
VD A+LL ++ E L L
Sbjct: 191 VDQHFHNRNRMARLLSAISTHPELLGL 217
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 28.3 bits (64), Expect = 2.9
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 158
M+ LP E +KL ++ LNY + P++ A
Sbjct: 301 SMRSLARERLPF--FKDEQKEKLAGSYNMLG-LNYYTSRFSKNIDISPNYSPVLNTDDAY 357
Query: 159 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+ +G + W+Y YPE K LL I+ N
Sbjct: 358 ASQEVNGPDGKPIGPPMGNP-WIYMYPEGLKDLLMIMKN 395
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 28.1 bits (61), Expect = 3.8
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 53 HDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPV-LPEP 111
H+ + + +IT +R FN +I + ALG V
Sbjct: 491 HETVKQLVEQDPSIKITNSTLRPFNFSTRLIPRYLEFAADALGQFVGENGQWQLKDEAPA 550
Query: 112 LVIPED 117
+V+P++
Sbjct: 551 IVLPDE 556
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 27.9 bits (63), Expect = 3.9
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY----VFEAITLTRHKLEGKVPLIGF 154
++ + V DL+ +D +NY + +
Sbjct: 275 DLVKDTAGLTDWSFVRDGDLRLAHQKLDFLG-VNYYSPTLVSEADGSGTHNSDGHGRSAH 333
Query: 155 SGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
S P + G T W P +LL L++
Sbjct: 334 SPWPGADRVAFHQPPGETTAMG---WAV-DPSGLYELLRRLSS 372
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY 133
M+ VG LP ++ +K +D +N+
Sbjct: 289 TMRARVGERLPR--FTADEAAVVKGALDFVG-INH 320
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 27.5 bits (62), Expect = 5.2
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 94 LGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIG 153
+ + LP+ E+++ ++ D +N+ L + +EG P
Sbjct: 281 VSRNSADEGYTDSRLPQ--FTAEEVEYIRGTHDFLG-INFYTA--LLGKSGVEGYEP--- 332
Query: 154 FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
S + + + + S WL P +K L + N
Sbjct: 333 -SRYRDSGVILTQDAAWPISAS---SWLKVVPWGFRKELNWIKN 372
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter,
structural genomics, APC87322.1, PSI-2, protein
structure initiative; 1.50A {Enterococcus faecalis}
SCOP: d.58.18.13
Length = 100
Score = 26.2 bits (58), Expect = 5.9
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 73 IRRFNLDASIIFSDILVI-PQALG-MVVEMK 101
++ + ++ SII +I A+G + +++
Sbjct: 44 VQEYQVEVSIIQGNIQQTKQGAVGSLYIQLL 74
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL
domain, structur genomics, PSI-2, protein structure
initiative; 2.15A {Staphylococcus aureus subsp} SCOP:
d.58.18.13
Length = 98
Score = 25.8 bits (57), Expect = 5.9
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 67 EITLQPI-----RRFNLDASIIFSDILVIP-QALG-MVVEMK 101
T +PI +++ +I+ ++I +G +V+ +
Sbjct: 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIP 71
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 27.2 bits (61), Expect = 7.7
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 99 EMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNY-----VFEAITLTRHKLEGKVPLIG 153
M VG LP PE+ +K D LNY + + G
Sbjct: 298 IMIDTVGERLPS--FSPEESNLVKGSYDFLG-LNYYFTQYAQPSPNPVNSTNHTAMMDAG 354
Query: 154 FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
+ I K + S +Y YP+ +++ N
Sbjct: 355 AKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKN 398
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 26.8 bits (58), Expect = 8.3
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 153 GFSGAPWTLM-SYMIEGG----GSKTMSKSKHWLYKYPEESKKLLE 193
+ P+ + YM + G G +M K ++ + P+ ++L
Sbjct: 262 DKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLG 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,422,730
Number of extensions: 271174
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 45
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)