RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15359
         (281 letters)



>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score =  211 bits (537), Expect = 2e-67
 Identities = 151/250 (60%), Positives = 187/250 (74%)

Query: 11  FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
           FP LKND  LRAA GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C++PE   E+TL
Sbjct: 1   FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 60

Query: 71  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
           QP+RRF LDA+IIFS ILV+PQALGM V M P  GP  PEPL   +DL++L+ P  V  E
Sbjct: 61  QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120

Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
           L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180

Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
           LL ILT+ +V YLVGQ  AGAQ LQLFES+A +L   LF +FALPYI  + ++VKA+L++
Sbjct: 181 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240

Query: 251 MNNDVPMTIF 260
                   I 
Sbjct: 241 AGLAPVPMII 250


>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
           (Nicotiana tabacum), UROD-III [TaxId: 4097]}
          Length = 343

 Score =  160 bits (406), Expect = 7e-48
 Identities = 86/257 (33%), Positives = 144/257 (56%), Gaps = 6/257 (2%)

Query: 19  LLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFT-ICQTPELAAEITLQPIRRFN 77
           LL A RG+EV++ P+W+MRQAGRY+  ++ L  K+  F    +  +L  EI+LQP + F 
Sbjct: 5   LLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFR 64

Query: 78  LDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEA 137
            D  I+FSDIL     + +  ++    GPV+ +PL    D++K++  +       YV EA
Sbjct: 65  PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSV-PYVGEA 123

Query: 138 ITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 197
           +T+ R ++  +  ++GF GAP+TL SY++EGG SK  +K K   +  P+    LL+    
Sbjct: 124 LTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFAT 183

Query: 198 VIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPM 257
            +  Y+  QA +GAQ +Q+F+S A  L    F+EF+LPY+     ++   +K  + ++P+
Sbjct: 184 SMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLK----QIVDSVKLTHPNLPL 239

Query: 258 TIFAKGAPKQGHNCYNY 274
            ++A G+          
Sbjct: 240 ILYASGSGGLLERLPLT 256


>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
           transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 402

 Score = 30.3 bits (68), Expect = 0.26
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 146 EGKVPLIGF---SGAPWTLMS-YMIEGG----GSKTMSKSKHWLYKYPEESKKLLE 193
            GK   IG+   +  P+  +  YM + G    G  +M   K ++ + P+   ++L 
Sbjct: 232 SGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLG 287


>d2bh1a1 c.55.1.11 (A:146-239) Cytoplasmic domain of general
           secretion pathway protein L, EpsL {Vibrio cholerae
           [TaxId: 666]}
          Length = 94

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 3/25 (12%), Positives = 9/25 (36%)

Query: 246 AQLKQMNNDVPMTIFAKGAPKQGHN 270
            + +   + + M +  + A     N
Sbjct: 63  QEWRYEPSGLVMQLLTQEALTSKFN 87


>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
           562]}
          Length = 172

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 148 KVPLIGFSGAPWTLM--SYMIEGGGSKTMSKSKHWLYKYPEESKKLLE 193
           KVP   FS      +  S +      +       +L + P ++K ++ 
Sbjct: 106 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVG 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,298
Number of extensions: 51871
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 12
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)