BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15360
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8HY31|DCUP_SHEEP Uroporphyrinogen decarboxylase OS=Ovis aries GN=UROD PE=1 SV=1
Length = 367
Score = 148 bits (373), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VPM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQGNLDPCALYAS+E
Sbjct: 256 VPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKTVTLQGNLDPCALYASEE 315
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ K+ QM +FG RYIANLGHG+YPDMDPEHV +DA+H
Sbjct: 316 EIGKLVQQMLNDFGPQRYIANLGHGLYPDMDPEHVGAFVDAVH 358
>sp|P06132|DCUP_HUMAN Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2
Length = 367
Score = 147 bits (370), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VPM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQGNLDPCALYAS+E
Sbjct: 256 VPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEE 315
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ ++ QM +FG RYIANLGHG+YPDMDPEHV +DA+H
Sbjct: 316 EIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVH 358
>sp|Q5RDK5|DCUP_PONAB Uroporphyrinogen decarboxylase OS=Pongo abelii GN=UROD PE=2 SV=1
Length = 367
Score = 147 bits (370), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VPM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQGNLDPCALYAS+E
Sbjct: 256 VPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEE 315
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ ++ QM +FG RYIANLGHG+YPDMDPEHV +DA+H
Sbjct: 316 EIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVH 358
>sp|P70697|DCUP_MOUSE Uroporphyrinogen decarboxylase OS=Mus musculus GN=Urod PE=1 SV=2
Length = 367
Score = 143 bits (360), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/103 (61%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VPM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQGNLDPCALYAS+E
Sbjct: 256 VPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARERVGKAVTLQGNLDPCALYASEE 315
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ ++ QM +FG RYIANLGHG+YPDMDPE V +DA+H
Sbjct: 316 EIGRLVQQMLDDFGPQRYIANLGHGLYPDMDPERVGAFVDAVH 358
>sp|P32362|DCUP_RAT Uroporphyrinogen decarboxylase (Fragment) OS=Rattus norvegicus
GN=Urod PE=1 SV=1
Length = 364
Score = 143 bits (360), Expect = 4e-34, Method: Composition-based stats.
Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
+PM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQG LDPCALYAS+E
Sbjct: 253 MPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKAREPVGKTVTLQGELDPCALYASEE 312
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ ++ QM +FG RYIANLGHG+YPDMDPEHV +DA+H
Sbjct: 313 EIGRLVQQMLNDFGPQRYIANLGHGLYPDMDPEHVGAFLDAVH 355
>sp|Q9PTS2|DCUP_DANRE Uroporphyrinogen decarboxylase OS=Danio rerio GN=urod PE=2 SV=1
Length = 369
Score = 132 bits (333), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/106 (52%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 3 NDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYAS 61
++VPM +FAK HY LE+L+++ Y++VG+DWTI+P AR K +LQGN+DPCALY +
Sbjct: 256 DNVPMIVFAKDGHYGLEDLSESAYEVVGLDWTIDPRSARVRTGGKVSLQGNMDPCALYGT 315
Query: 62 KEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
KE + +I +M + FG YIANLGHG+YPDMDPE+V ++A+H+
Sbjct: 316 KESISEIVRRMLEGFGTKGYIANLGHGLYPDMDPENVGAFVEAVHN 361
>sp|Q2S1W0|DCUP_SALRD Uroporphyrinogen decarboxylase OS=Salinibacter ruber (strain DSM
13855 / M31) GN=hemE PE=3 SV=1
Length = 354
Score = 123 bits (309), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASK 62
DVP+ IFAKGAHYAL+ L T YD++ +D T++P AR + ++ LQGNLDPCALYA
Sbjct: 242 DVPLVIFAKGAHYALDALADTDYDVISLDSTMDPDAARDTVGDRAVLQGNLDPCALYAPP 301
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ LR+ M FG +I NLGHG+ PD DPEH +V +DA+H+
Sbjct: 302 DVLRREVQHMLAGFGPHHHIGNLGHGMLPDHDPEHARVFVDAVHE 346
>sp|Q9V595|DCUP_DROME Uroporphyrinogen decarboxylase OS=Drosophila melanogaster GN=Updo
PE=3 SV=1
Length = 356
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VPMT+FAKGA ++L+E ++ YD++G+DWT++P AR+++ N TLQGNLDP +Y +
Sbjct: 251 VPMTLFAKGAGHSLKEQSELGYDVIGLDWTVDPLEARNLVGPNITLQGNLDPQDMYRDPD 310
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
+LR + T+M +FGKSRYIANLGHGI P ++VL++A+H AL
Sbjct: 311 ELRNLTTEMVHKFGKSRYIANLGHGITPQTPITSMEVLVEAVHKAL 356
>sp|O18601|DCUP_DROVI Uroporphyrinogen decarboxylase OS=Drosophila virilis GN=Updo PE=3
SV=1
Length = 386
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 7 MTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKEKL 65
+ IFAKGA ++L+E ++ YD++G+DWT++P AR+++ N TLQGNLDP ++Y +L
Sbjct: 283 LIIFAKGAGHSLKEQSELGYDVIGLDWTVDPVEARAVVGPNITLQGNLDPQSMYCEPNEL 342
Query: 66 RKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
R + T+M + GKSRYIAN+GHGI P ++VL++A H+AL
Sbjct: 343 RSLATEMVHKCGKSRYIANVGHGITPQTPITSMEVLVEAAHNAL 386
>sp|P32347|DCUP_YEAST Uroporphyrinogen decarboxylase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HEM12 PE=1 SV=1
Length = 362
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKE 63
+PM +FAKG+ YAL++L + +D+V +DW+ +P A I KN+ TLQGNLDP +Y SKE
Sbjct: 253 IPMIVFAKGSWYALDKLCCSGFDVVSLDWSWDPREAVKINKNRVTLQGNLDPGVMYGSKE 312
Query: 64 KLRKIGTQMAKEF--GKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
+ K QM + F GKSRYI N GHG +P MDP+ ++ ++ H
Sbjct: 313 VITKKVKQMIEAFGGGKSRYIVNFGHGTHPFMDPDVIKFFLEECH 357
>sp|Q11X05|DCUP_CYTH3 Uroporphyrinogen decarboxylase OS=Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469) GN=hemE PE=3 SV=1
Length = 344
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASKE 63
VP T+F+KGA + E+ N + VG+DW ++ ++ II +KTLQGN+DPCALY S+E
Sbjct: 236 VPRTVFSKGAFFVREDFNNFPCETVGLDWNMDIGESKKIIGPHKTLQGNMDPCALYLSEE 295
Query: 64 KLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R +M FG +IANLGHG+YPD D V+ +DA+ +
Sbjct: 296 QIRVKAKEMLDAFGTQSHIANLGHGLYPDTDKTKVKCFVDAVKE 339
>sp|Q54DF9|DCUP_DICDI Uroporphyrinogen decarboxylase OS=Dictyostelium discoideum GN=hemE
PE=1 SV=1
Length = 364
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Query: 4 DVPMTIFAKGAHYALEELNQT-KYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYAS 61
++P+ FAKG+++ALE+L+++ YD++GIDWTIEPS+AR ++ ++ +LQGNLDPC LY
Sbjct: 250 EIPLICFAKGSNFALEDLSKSGAYDVLGIDWTIEPSVAREMVADRVSLQGNLDPCVLYCG 309
Query: 62 KEKLRKIGTQMAKEFGKS-RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R +M + FG + R IANLGHG++P E + + A+H+
Sbjct: 310 DQVIRDQTQKMLQSFGTTKRLIANLGHGMHPTHPIEGPESYVKAVHE 356
>sp|A1AXS4|DCUP_RUTMC Uroporphyrinogen decarboxylase OS=Ruthia magnifica subsp.
Calyptogena magnifica GN=hemE PE=3 SV=1
Length = 347
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P+T+F KG LE++ + D V +DWT+E + A+ I K LQGNLDPC LYAS E
Sbjct: 239 IPITLFTKGGAMWLEQIANSGCDGVALDWTVELNDAQQRIGAKVALQGNLDPCVLYASPE 298
Query: 64 KLRKIGTQMAKEF-GKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
K+R+ ++ +F G + ++ NLGHGI PD++PEH++VL+D +H+
Sbjct: 299 KIREEVKKILSQFQGDTGHVFNLGHGISPDVNPEHMKVLVDVVHE 343
>sp|Q9USJ5|DCUP_SCHPO Uroporphyrinogen decarboxylase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hem12 PE=3 SV=2
Length = 355
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDPCALY 59
++VPM +FAKGA YA+++L + YD++G+DWT+ P A I N+ T QGNLDP LY
Sbjct: 242 RDEVPMIVFAKGAWYAIDQLCDSGYDVIGLDWTVSPKEAVRIRGNRRVTFQGNLDPNILY 301
Query: 60 ASKEKLRKIGTQMAKEF--GKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++E + +M ++F GK YI NLGHGI P ++P+ V+ ++ H
Sbjct: 302 GTREIIEARTKEMIQDFGGGKQGYIINLGHGITPGVNPDDVRFFLEKCH 350
>sp|Q3J6U6|DCUP_NITOC Uroporphyrinogen decarboxylase OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=hemE PE=3 SV=1
Length = 357
Score = 98.6 bits (244), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLAR-SIIKNKTLQGNLDPCALYASKE 63
VP+ +F KG LE + T D +G+DWT++ + AR + K LQGN+DPC LYAS E
Sbjct: 243 VPVILFTKGGGLWLETMAGTGCDALGVDWTVDLAKARMQVGKQVALQGNMDPCVLYASSE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R+ +++ K +G S ++ NLGHGI+P + PE V L+DA+H+
Sbjct: 303 RVRQEASEIIKAYGAGSGHVFNLGHGIHPTVMPEKVAALVDAVHE 347
>sp|B8GPU3|DCUP_THISH Uroporphyrinogen decarboxylase OS=Thioalkalivibrio sp. (strain
HL-EbGR7) GN=hemE PE=3 SV=1
Length = 351
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+T+F KG LE + +T D +G+DWT+ AR + ++ LQGNLDP LYAS E
Sbjct: 243 VPVTLFTKGGGAWLEVMAETGCDALGLDWTVNIGEARRRVGDRVALQGNLDPAVLYASAE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108
++R ++ ++FG S ++ NLGHGI+P +DPE V L+D +H A
Sbjct: 303 RVRAAARKVVEDFGPGSGHVFNLGHGIHPGIDPEKVAALVDEVHKA 348
>sp|B3QXB5|DCUP_CHLT3 Uroporphyrinogen decarboxylase OS=Chloroherpeton thalassium (strain
ATCC 35110 / GB-78) GN=hemE PE=3 SV=1
Length = 353
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASK 62
D+P+ +FAK A+ L +L T D +G+ W I+ + AR + ++ LQGNLDP LYAS
Sbjct: 237 DIPVIVFAKDANTILTDLADTGCDALGLSWNIDIARARQELNDRVALQGNLDPTVLYASP 296
Query: 63 EKLRKIGTQMAKEFG----KSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
E++R+ ++ +FG KS ++ NLGHGI PD++PEH++ L+D I +
Sbjct: 297 ERIREEAGKILAKFGQHTEKSGHVFNLGHGILPDVNPEHLKALVDFIKE 345
>sp|Q7N960|DCUP_PHOLL Uroporphyrinogen decarboxylase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=hemE PE=3 SV=1
Length = 354
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+T+FAKG LE + +T D +G+DWT + + AR + NK LQGN+DP LYAS E
Sbjct: 243 VPVTLFAKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYASPE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIH 106
++ + + + + FG S ++ NLGHGI+ D+ PEH V ++A+H
Sbjct: 303 RIEQEVSTILQGFGTGSGHVFNLGHGIHQDILPEHAGVFVEAVH 346
>sp|A5CVK5|DCUP_VESOH Uroporphyrinogen decarboxylase OS=Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA) GN=hemE PE=3 SV=1
Length = 345
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASK 62
++P+T+F+K L + T D VGIDWT+E + + NK +QGNLDP LYA+
Sbjct: 234 NIPITLFSKNGGKYLTHIANTGCDGVGIDWTVELYQVQQEVGNKVAIQGNLDPAVLYATP 293
Query: 63 EKLRKIGTQMAKEF-GKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106
E + + ++ +F G + YI NLGHGI PD+DPE+V++L+D +H
Sbjct: 294 EVIEREVKKVLSQFKGDTGYIFNLGHGITPDVDPENVKILVDCVH 338
>sp|A6GVN8|DCUP_FLAPJ Uroporphyrinogen decarboxylase OS=Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511) GN=hemE PE=3 SV=1
Length = 341
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 6 PMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASKEK 64
P+ +F KG +AL E+ ++K +G+DWT P AR + N TLQGN DP L +
Sbjct: 236 PVIVFGKGCWFALGEMGKSKASALGVDWTCSPRHARYLSGGNITLQGNFDPSRLLSPIPV 295
Query: 65 LRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++K+ +M EFGK +YI NLGHGI P++ +H + +DA+ +
Sbjct: 296 IKKMVHEMIDEFGKDKYIVNLGHGILPNIPVDHAKAFVDAVKE 338
>sp|A4IW07|DCUP_FRATW Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=hemE PE=3 SV=1
Length = 344
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|Q5NIM0|DCUP_FRATT Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=hemE PE=3 SV=1
Length = 344
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|Q14K23|DCUP_FRAT1 Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=hemE PE=3 SV=1
Length = 344
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|Q0BK67|DCUP_FRATO Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=hemE PE=3 SV=1
Length = 344
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|B2SEW4|DCUP_FRATM Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=hemE PE=3 SV=1
Length = 344
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|Q2A1G5|DCUP_FRATH Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=hemE PE=3 SV=1
Length = 344
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|A7NEJ1|DCUP_FRATF Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=hemE PE=3 SV=1
Length = 344
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|A0L3L1|DCUP_MAGSM Uroporphyrinogen decarboxylase OS=Magnetococcus sp. (strain MC-1)
GN=hemE PE=3 SV=1
Length = 356
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P+ +FAKG + +E++ Q+ D+VG+DWT E R I +K LQGN+DP LYAS E
Sbjct: 242 IPVILFAKGCNAMVEDIAQSGCDVVGLDWTSEIGPLRERIGHKVALQGNMDPALLYASPE 301
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++ + ++ + FG +I NLGHG+ PDM P+HV+ L+ A+ +
Sbjct: 302 RIAQGAREVLQAFGPHPGHIFNLGHGMAPDMSPDHVEALVRAVKE 346
>sp|A0Q8F6|DCUP_FRATN Uroporphyrinogen decarboxylase OS=Francisella tularensis subsp.
novicida (strain U112) GN=hemE PE=3 SV=1
Length = 344
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASK 62
++P+ F KG EE+ D VG+DW++ AR I K LQGN DP LY SK
Sbjct: 234 NIPIVFFTKGGSNFFEEIKDKSCDGVGVDWSVTLKQARHRIGVGKVLQGNFDPAFLYGSK 293
Query: 63 EKLRKIGTQMAKEFGKS----RYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +R+ + EF +S YI NLGHGIYPD+DP+ V+V+IDAI +
Sbjct: 294 QSIRET-VRANIEFIQSDKLNNYIVNLGHGIYPDIDPDSVRVMIDAIRE 341
>sp|Q60BY1|DCUP_METCA Uroporphyrinogen decarboxylase OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=hemE PE=3 SV=1
Length = 350
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P F KG LE + YD +G+DWT + AR + ++ LQGNLDP ALYA E
Sbjct: 238 IPAIFFTKGGGQWLEAMADAGYDALGLDWTTDIGSARQRVGDRVALQGNLDPVALYARPE 297
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+R ++ + +G+ S ++ NLGHG+ PD+ PEHV +I+A+H+
Sbjct: 298 IIRGEVRKILERYGRGSGHVFNLGHGVTPDIKPEHVGAMIEAVHE 342
>sp|Q1IGA3|DCUP_PSEE4 Uroporphyrinogen decarboxylase OS=Pseudomonas entomophila (strain
L48) GN=hemE PE=3 SV=1
Length = 354
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +F K LE + + D +G+DWT E AR + +K LQGN+DP LYA E
Sbjct: 243 VPVILFTKNGGLWLESIAEAGADALGLDWTCEIGDARRRVGDKVALQGNMDPTVLYAKPE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+RK ++ +GK S ++ NLGHGI P++DPEH V I+A+H+
Sbjct: 303 AIRKEVARILASYGKGSGHVFNLGHGITPEVDPEHAGVFINAVHE 347
>sp|Q12S16|DCUP_SHEDO Uroporphyrinogen decarboxylase OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=hemE PE=3 SV=1
Length = 354
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYA 60
VP+T+F KG LE + +T D +G+DWT++ AR + +K LQGN+DP LYA
Sbjct: 240 GRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGDKVALQGNMDPSMLYA 299
Query: 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
S E++ + Q+ +GK + ++ NLGHGI+ +DPEH I+++H+
Sbjct: 300 SPERIHQEVGQILSSYGKGTGHVFNLGHGIHQHVDPEHAGAFINSVHE 347
>sp|A6TGQ4|DCUP_KLEP7 Uroporphyrinogen decarboxylase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=hemE PE=3
SV=1
Length = 354
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+T+F KG LE + +T D +G+DWT + + AR + NK LQGN+DP LYAS
Sbjct: 243 VPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYASAP 302
Query: 64 KLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIH 106
++ + + FG+ ++ NLGHGI+ D+DPEH V ++A+H
Sbjct: 303 RIEEEVATILAGFGQGEGHVFNLGHGIHQDVDPEHAGVFVEAVH 346
>sp|B3PDU1|DCUP_CELJU Uroporphyrinogen decarboxylase OS=Cellvibrio japonicus (strain
Ueda107) GN=hemE PE=3 SV=1
Length = 356
Score = 89.4 bits (220), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +F KG L+ + T +G+DWT + + AR+ + N+ LQGN+DP LYAS E
Sbjct: 243 VPVILFTKGGGQWLDAMADTGATALGLDWTTDIAAARARVGNRVALQGNMDPGILYASPE 302
Query: 64 KLR-KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R ++G +A S +I NLGHGI P++DPEH I A+HD
Sbjct: 303 RIRAEVGNILAAYGQGSGHIFNLGHGITPEVDPEHAGAFIRAVHD 347
>sp|Q0A4Y2|DCUP_ALHEH Uroporphyrinogen decarboxylase OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=hemE PE=3 SV=1
Length = 365
Score = 88.6 bits (218), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +F KG LE + T D +G+DWT AR + ++ LQGNLDPC LYAS E
Sbjct: 243 VPVVLFTKGGGQWLEAMAATGCDGLGLDWTTNLGQARDRVGDRVALQGNLDPCVLYASPE 302
Query: 64 KLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIH 106
+R ++ ++G ++ NLGHGI+P + PEH +IDA+H
Sbjct: 303 TIRNEVARVLADYGPGPGHVFNLGHGIHPAIPPEHAGAMIDAVH 346
>sp|B1KN91|DCUP_SHEWM Uroporphyrinogen decarboxylase OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=hemE PE=3 SV=1
Length = 354
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYA 60
VP+T+F KG LE + +T D +G+DWT++ AR + +K LQGN+DP LYA
Sbjct: 240 GRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSVLYA 299
Query: 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
S E++ + Q+ +G+ + ++ NLGHGI+ +DPEH I+++H+
Sbjct: 300 SPERIHQEVDQILSSYGEGTGHVFNLGHGIHQHVDPEHAGAFINSVHE 347
>sp|B8CTX5|DCUP_SHEPW Uroporphyrinogen decarboxylase OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=hemE PE=3 SV=1
Length = 354
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYA 60
VP+T+F KG LE + +T D +G+DWT++ AR + NK LQGN+DP LYA
Sbjct: 240 GRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGNKVALQGNMDPSVLYA 299
Query: 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
S E++ + Q+ +G+ + ++ NLGHGI+ ++PEH I+++H+
Sbjct: 300 SPERIHQEVEQILSSYGEGTGHVFNLGHGIHQHVNPEHAGSFINSVHE 347
>sp|A5FLE7|DCUP_FLAJ1 Uroporphyrinogen decarboxylase OS=Flavobacterium johnsoniae (strain
ATCC 17061 / DSM 2064 / UW101) GN=hemE PE=3 SV=1
Length = 341
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 6 PMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIK-NKTLQGNLDPCALYASKEK 64
P+ +F KG +AL E+ +++ +G+DWT AR + N TLQGN DP L +
Sbjct: 236 PVIVFGKGCWFALGEMGKSRASALGVDWTCSARNARYLSGGNITLQGNFDPSRLLSPIPT 295
Query: 65 LRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++K+ +M EFGK +Y+ NLGHGI P++ +H + IDA+ +
Sbjct: 296 IKKMVHEMIDEFGKDKYVVNLGHGILPNIPVDHAKAFIDAVKE 338
>sp|A8FQD0|DCUP_SHESH Uroporphyrinogen decarboxylase OS=Shewanella sediminis (strain
HAW-EB3) GN=hemE PE=3 SV=1
Length = 354
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYA 60
VP+T+F KG LE + +T D +G+DWT++ AR + +K LQGN+DP LYA
Sbjct: 240 GRQVPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSVLYA 299
Query: 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
S E++ + Q+ +G+ + ++ NLGHGI+ +DPEH I+++H+
Sbjct: 300 SPERIHQEVDQILSSYGEGTGHVFNLGHGIHQHVDPEHAGSFINSVHE 347
>sp|A1WVX2|DCUP_HALHL Uroporphyrinogen decarboxylase OS=Halorhodospira halophila (strain
DSM 244 / SL1) GN=hemE PE=3 SV=1
Length = 364
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P+T+F KG LE++ T D VG+DWT + AR I + LQGNLDPC L+A+ E
Sbjct: 245 IPVTLFTKGGGQWLEDIADTGCDGVGLDWTTSLADARRRIGGRVALQGNLDPCMLHANPE 304
Query: 64 KLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIHD 107
+R+ + +EFG ++ NLGHGI P+ PE+V +I A+H+
Sbjct: 305 VIRREVARCLEEFGHGPGHVFNLGHGIQPETPPENVDAMIRALHE 349
>sp|A3QIJ0|DCUP_SHELP Uroporphyrinogen decarboxylase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=hemE PE=3 SV=1
Length = 354
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYA 60
VP+T+F KG LE + +T D +G+DWT++ + AR + +K LQGN+DP LYA
Sbjct: 240 GRQVPVTLFTKGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYA 299
Query: 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
S E++ + Q+ +G+ S ++ NLGHGI+ +DPEH I ++H+
Sbjct: 300 SPERIHEEVRQILAGYGEGSGHVFNLGHGIHQHVDPEHAGAFIKSVHE 347
>sp|A0M6C4|DCUP_GRAFK Uroporphyrinogen decarboxylase OS=Gramella forsetii (strain KT0803)
GN=hemE PE=3 SV=1
Length = 341
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 1 MNNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALY 59
+ ++VP+ + KG +AL+++ ++ +G+DWT E AR + + TLQGN DP LY
Sbjct: 231 LKDEVPVIAYGKGCWFALDKMAKSGAAALGVDWTCEARNARYLSGGEITLQGNFDPARLY 290
Query: 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ +++ + M K FGK RYIANLGHGI P++ ++ + +DA+ +
Sbjct: 291 SKPIEIKYMVNDMIKAFGKDRYIANLGHGILPNIPVDNAKAFVDAVKE 338
>sp|C4K8F9|DCUP_HAMD5 Uroporphyrinogen decarboxylase OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=hemE PE=3 SV=1
Length = 356
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P+T+F KG LE + +T D +G+DWT + AR + +K LQGN+DP LYA
Sbjct: 243 IPVTLFTKGGGQWLEAIAETGCDAIGLDWTTDIGEARHRVGDKVALQGNMDPAVLYAPAP 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIH 106
+ K + FGK + +I NLGHG++ D PEHV++ +DA+H
Sbjct: 303 IIEKEVASILGAFGKGTGHIFNLGHGVHQDTPPEHVRIFVDAVH 346
>sp|B1J2J9|DCUP_PSEPW Uroporphyrinogen decarboxylase OS=Pseudomonas putida (strain W619)
GN=hemE PE=3 SV=1
Length = 354
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +F K LE + + D +G+DWT E AR + +K LQGN+DP LYA E
Sbjct: 243 VPVILFTKNGGLWLESIAEAGADALGLDWTCEIGDARRRVGDKVALQGNMDPTVLYAKPE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+R ++ +GK + ++ NLGHGI P++DPEH V I+A+H+
Sbjct: 303 AIRNEVARILASYGKGTGHVFNLGHGITPEVDPEHAGVFINAVHE 347
>sp|A4SGN6|DCUP_PROVI Uroporphyrinogen decarboxylase OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=hemE PE=3 SV=1
Length = 351
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 73/109 (66%), Gaps = 5/109 (4%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASK 62
D+P+ +F+K + LE++ T D VG+ W I+ + AR+I+ ++ LQGN+DP LY +
Sbjct: 237 DIPVIVFSKDCNTILEDIAATGCDAVGLGWGIDIAKARTILGDRVCLQGNMDPTVLYGTP 296
Query: 63 EKLRKIGTQMAKEFGK----SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
EK++ ++ K+FG+ S ++ NLGHGI PD+DP ++++L++ + +
Sbjct: 297 EKIKAEAGKILKQFGQHTANSGHVFNLGHGILPDVDPANLKLLVEFVKE 345
>sp|A1SZJ4|DCUP_PSYIN Uroporphyrinogen decarboxylase OS=Psychromonas ingrahamii (strain
37) GN=hemE PE=3 SV=1
Length = 354
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
+P+T+F K LE + T D +G+DWTI+ + A++ + ++ LQGN+DP LYA+ E
Sbjct: 243 IPVTLFTKNGGQWLEAIADTGCDAIGLDWTIDMASAKARVGDRVVLQGNMDPSMLYATPE 302
Query: 64 KLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R+ + FGK ++ NLGHGI+ D+ PE+ +V +DA+H+
Sbjct: 303 RIRQEVATILASFGKGNGHVFNLGHGIHLDVPPENGKVFVDAVHE 347
>sp|Q088H1|DCUP_SHEFN Uroporphyrinogen decarboxylase OS=Shewanella frigidimarina (strain
NCIMB 400) GN=hemE PE=3 SV=1
Length = 354
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+T+F KG LE + +T D +G+DWT++ AR + +K LQGN+DP LYA+ E
Sbjct: 243 VPVTLFTKGGGLWLESMAETGCDALGLDWTVDIGDARRRVGHKVALQGNMDPSMLYATPE 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++ + Q+ +G+ + ++ NLGHGI+ +DPEH I+++H+
Sbjct: 303 RIHQEVDQILASYGEGTGHVFNLGHGIHQHVDPEHAGAFINSVHE 347
>sp|A1KT40|DCUP_NEIMF Uroporphyrinogen decarboxylase OS=Neisseria meningitidis serogroup
C / serotype 2a (strain ATCC 700532 / FAM18) GN=hemE
PE=3 SV=1
Length = 354
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +FAKG LE + Q D +G+DWT AR + N+ LQGN DP AL+ + E
Sbjct: 242 VPVIVFAKGGGLWLESMAQIGADALGLDWTCNIGEARRRVGNQVALQGNFDPSALFGTPE 301
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+R ++ ++G S ++ NLGHGI DPEH ++L+D +H+
Sbjct: 302 SIRAEVARILADYGHGSGHVFNLGHGINQHADPEHAKILVDTVHE 346
>sp|Q3IJU2|DCUP_PSEHT Uroporphyrinogen decarboxylase OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=hemE PE=3 SV=1
Length = 354
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+T+F K +E + T D +G+DWTI S A+ + +K LQGN+DP L+ + E
Sbjct: 243 VPVTLFTKNGGQWIEAIAATGCDAIGLDWTINISDAKRRVGDKVALQGNMDPSMLHGTPE 302
Query: 64 KLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R+ + ++FG ++ NLGHGI PD+DPE+ V I+A+H+
Sbjct: 303 RIRQEVATILEDFGTGNGHVFNLGHGITPDVDPENAGVFINAVHE 347
>sp|Q31JF4|DCUP_THICR Uroporphyrinogen decarboxylase OS=Thiomicrospira crunogena (strain
XCL-2) GN=hemE PE=3 SV=1
Length = 354
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKT-LQGNLDPCALYASKE 63
VP+ +F KG LE + +T D +G+DWT + AR+ + +K LQGN+DP LYAS +
Sbjct: 243 VPVILFTKGGGQWLESMAETGCDALGLDWTTDIDDARARVGDKVALQGNMDPSVLYASPD 302
Query: 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++R+ + +++G+ + ++ NLGHGI+P++DPEH I A+ +
Sbjct: 303 RIREEVATILEKYGQGTGHVFNLGHGIHPEIDPEHAGAFIKAVTE 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,621,493
Number of Sequences: 539616
Number of extensions: 1499997
Number of successful extensions: 5159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3890
Number of HSP's gapped (non-prelim): 549
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)