Query psy15360
Match_columns 109
No_of_seqs 102 out of 1028
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:54:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02433 uroporphyrinogen deca 100.0 3.4E-33 7.5E-38 214.1 10.2 106 4-109 232-338 (345)
2 COG0407 HemE Uroporphyrinogen- 100.0 6E-33 1.3E-37 213.4 10.0 107 3-109 241-349 (352)
3 PRK00115 hemE uroporphyrinogen 100.0 1.2E-32 2.7E-37 210.9 10.0 106 4-109 239-345 (346)
4 TIGR01464 hemE uroporphyrinoge 100.0 3.2E-31 6.8E-36 202.2 10.0 104 4-107 233-338 (338)
5 cd00717 URO-D Uroporphyrinogen 100.0 4E-31 8.7E-36 201.3 9.9 104 4-107 230-335 (335)
6 KOG2872|consensus 100.0 3.1E-30 6.8E-35 192.8 9.8 106 4-109 251-357 (359)
7 PF01208 URO-D: Uroporphyrinog 100.0 1E-28 2.2E-33 187.8 9.6 105 4-108 233-343 (343)
8 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 1.9E-28 4.2E-33 190.0 9.5 105 3-107 267-378 (378)
9 TIGR01463 mtaA_cmuA methyltran 100.0 2E-28 4.4E-33 186.7 9.0 102 5-109 234-339 (340)
10 cd03307 Mta_CmuA_like MtaA_Cmu 100.0 2.3E-28 5E-33 185.7 8.6 100 5-107 223-326 (326)
11 cd03465 URO-D_like The URO-D _ 100.0 3.4E-28 7.4E-33 183.8 9.4 105 3-107 220-330 (330)
12 PRK06252 methylcobalamin:coenz 100.0 3.4E-28 7.3E-33 185.2 9.1 102 5-109 233-337 (339)
13 cd00465 URO-D_CIMS_like The UR 99.9 2.4E-25 5.1E-30 166.8 9.7 104 3-107 198-306 (306)
14 cd03309 CmuC_like CmuC_like. P 99.9 4.8E-23 1.1E-27 157.3 9.1 102 4-105 212-319 (321)
15 PRK04326 methionine synthase; 99.6 3.6E-15 7.7E-20 113.6 7.4 105 4-108 207-322 (330)
16 PRK00957 methionine synthase; 99.6 1.8E-14 3.8E-19 108.9 8.8 106 4-109 190-305 (305)
17 cd03311 CIMS_C_terminal_like C 99.1 3.5E-10 7.5E-15 86.2 8.7 102 4-105 208-330 (332)
18 PRK09121 5-methyltetrahydropte 98.2 1E-05 2.3E-10 62.4 8.3 93 16-108 235-334 (339)
19 PF01717 Meth_synt_2: Cobalami 98.1 2.3E-05 4.9E-10 59.7 7.9 105 3-107 209-324 (324)
20 PRK01207 methionine synthase; 97.9 9.2E-05 2E-09 57.5 8.7 103 6-108 207-339 (343)
21 PRK08575 5-methyltetrahydropte 97.9 8.2E-05 1.8E-09 57.1 7.9 100 4-104 209-319 (326)
22 PRK06233 hypothetical protein; 97.7 0.00012 2.7E-09 57.1 6.9 105 4-108 236-370 (372)
23 PLN02475 5-methyltetrahydropte 97.5 0.00076 1.6E-08 57.3 8.5 105 4-108 642-758 (766)
24 PRK06520 5-methyltetrahydropte 97.4 0.00047 1E-08 53.9 6.7 91 16-107 258-366 (368)
25 PRK05222 5-methyltetrahydropte 97.4 0.00062 1.4E-08 57.7 7.8 105 4-108 637-752 (758)
26 TIGR01371 met_syn_B12ind 5-met 97.0 0.0037 8E-08 53.1 8.2 104 5-108 632-747 (750)
27 cd03310 CIMS_like CIMS - Cobal 96.8 0.0054 1.2E-07 46.3 6.7 86 5-92 202-303 (321)
28 cd03312 CIMS_N_terminal_like C 96.8 0.0063 1.4E-07 47.4 7.2 86 4-90 231-324 (360)
29 PRK06052 5-methyltetrahydropte 96.7 0.0094 2E-07 46.4 7.6 101 4-108 200-340 (344)
30 PLN02475 5-methyltetrahydropte 95.8 0.037 8.1E-07 47.3 6.9 87 4-90 235-332 (766)
31 TIGR01371 met_syn_B12ind 5-met 95.6 0.045 9.6E-07 46.6 6.9 85 4-90 227-319 (750)
32 COG0620 MetE Methionine syntha 95.6 0.065 1.4E-06 41.5 7.1 105 4-108 212-327 (330)
33 KOG2263|consensus 95.0 0.14 3.1E-06 42.1 7.6 99 9-108 648-758 (765)
34 PRK05222 5-methyltetrahydropte 94.9 0.13 2.9E-06 43.9 7.4 84 5-90 234-325 (758)
35 TIGR02660 nifV_homocitr homoci 93.1 1.2 2.6E-05 34.7 9.2 50 60-109 106-155 (365)
36 COG0646 MetH Methionine syntha 92.1 2.8 6.1E-05 32.4 9.7 98 3-107 187-311 (311)
37 cd07939 DRE_TIM_NifV Streptomy 91.8 2.6 5.6E-05 31.1 9.2 49 60-108 103-151 (259)
38 cd07948 DRE_TIM_HCS Saccharomy 91.6 2.3 5E-05 31.8 8.8 47 61-107 106-152 (262)
39 cd07940 DRE_TIM_IPMS 2-isoprop 91.3 2.7 5.9E-05 31.2 8.9 49 60-108 107-155 (268)
40 PRK11858 aksA trans-homoaconit 89.5 3.5 7.7E-05 32.3 8.5 50 59-108 108-157 (378)
41 KOG4828|consensus 89.3 0.63 1.4E-05 31.0 3.5 94 3-107 20-122 (125)
42 TIGR03234 OH-pyruv-isom hydrox 88.5 3.4 7.4E-05 29.9 7.4 64 15-78 17-95 (254)
43 COG4221 Short-chain alcohol de 88.2 6.4 0.00014 29.5 8.7 84 17-104 22-111 (246)
44 TIGR02090 LEU1_arch isopropylm 87.8 6.3 0.00014 30.8 8.8 47 61-107 106-152 (363)
45 PF13380 CoA_binding_2: CoA bi 87.7 2.1 4.6E-05 27.9 5.4 70 16-86 18-88 (116)
46 cd01096 Alkanal_monooxygenase 86.5 0.43 9.3E-06 36.2 1.7 43 57-99 271-313 (315)
47 PRK10508 hypothetical protein; 86.0 0.81 1.8E-05 35.4 3.0 49 58-107 284-332 (333)
48 PF10178 DUF2372: Uncharacteri 85.5 1.5 3.2E-05 27.9 3.6 48 57-107 35-87 (90)
49 PRK09389 (R)-citramalate synth 84.7 9.6 0.00021 31.1 8.7 50 59-108 106-155 (488)
50 PLN02746 hydroxymethylglutaryl 84.0 8.3 0.00018 30.2 7.8 49 60-108 155-209 (347)
51 PRK09856 fructoselysine 3-epim 83.8 8.4 0.00018 28.1 7.5 91 16-106 17-132 (275)
52 PRK09989 hypothetical protein; 82.0 10 0.00022 27.6 7.3 63 16-78 19-96 (258)
53 PF00682 HMGL-like: HMGL-like 81.8 14 0.00029 26.6 7.8 15 18-32 73-87 (237)
54 PLN02274 inosine-5'-monophosph 81.2 3.1 6.7E-05 34.1 4.7 78 16-103 251-348 (505)
55 COG2185 Sbm Methylmalonyl-CoA 80.3 6.4 0.00014 27.1 5.3 74 13-91 28-105 (143)
56 COG0159 TrpA Tryptophan syntha 80.0 10 0.00022 28.8 6.7 100 2-109 92-204 (265)
57 TIGR03858 LLM_2I7G probable ox 78.8 1.5 3.2E-05 33.6 2.0 47 57-103 283-330 (337)
58 cd07938 DRE_TIM_HMGL 3-hydroxy 78.8 19 0.0004 27.0 7.9 48 61-108 108-161 (274)
59 PRK07896 nicotinate-nucleotide 78.2 5.1 0.00011 30.6 4.7 48 51-104 218-266 (289)
60 TIGR03612 RutA pyrimidine util 77.8 3.1 6.7E-05 32.3 3.5 43 57-105 303-345 (355)
61 PRK06806 fructose-bisphosphate 77.1 5 0.00011 30.4 4.4 71 4-77 200-276 (281)
62 COG0135 TrpF Phosphoribosylant 76.8 18 0.00039 26.4 7.0 44 61-108 164-208 (208)
63 PRK07315 fructose-bisphosphate 76.6 5.3 0.00011 30.5 4.4 74 4-77 202-288 (293)
64 PRK05096 guanosine 5'-monophos 76.1 17 0.00037 28.6 7.1 40 16-55 111-161 (346)
65 PRK07535 methyltetrahydrofolat 75.9 4.9 0.00011 30.1 4.0 46 59-107 21-66 (261)
66 cd07945 DRE_TIM_CMS Leptospira 75.8 18 0.00038 27.3 7.1 49 60-108 108-159 (280)
67 PRK05692 hydroxymethylglutaryl 75.6 25 0.00053 26.6 7.8 49 60-108 113-167 (287)
68 TIGR03558 oxido_grp_1 lucifera 75.0 2.2 4.8E-05 32.4 2.0 29 57-85 277-305 (323)
69 TIGR01859 fruc_bis_ald_ fructo 74.9 6.4 0.00014 29.8 4.5 73 4-78 200-278 (282)
70 PF01729 QRPTase_C: Quinolinat 74.4 6.7 0.00015 27.5 4.2 59 36-105 89-148 (169)
71 PRK12743 oxidoreductase; Provi 74.4 29 0.00062 24.8 8.0 86 16-102 17-108 (256)
72 PRK09997 hydroxypyruvate isome 74.2 23 0.00051 25.7 7.2 63 16-78 19-96 (258)
73 PRK05678 succinyl-CoA syntheta 73.6 20 0.00042 27.4 6.8 97 4-109 8-116 (291)
74 PRK00915 2-isopropylmalate syn 73.2 44 0.00095 27.4 9.2 50 59-108 112-161 (513)
75 TIGR03860 FMN_nitrolo FMN-depe 72.9 5.8 0.00013 31.5 4.0 43 57-105 358-400 (422)
76 PF14226 DIOX_N: non-haem diox 72.5 7.7 0.00017 24.5 3.9 44 61-108 9-52 (116)
77 cd01299 Met_dep_hydrolase_A Me 72.4 11 0.00023 28.3 5.2 51 59-109 116-173 (342)
78 PRK08589 short chain dehydroge 71.8 35 0.00076 24.7 7.9 94 7-102 8-111 (272)
79 cd04724 Tryptophan_synthase_al 71.0 20 0.00043 26.3 6.2 26 7-32 3-34 (242)
80 PRK08265 short chain dehydroge 70.4 37 0.0008 24.4 8.8 89 6-100 7-105 (261)
81 PF00106 adh_short: short chai 70.2 24 0.00052 23.1 6.1 86 16-103 15-109 (167)
82 cd07937 DRE_TIM_PC_TC_5S Pyruv 70.1 29 0.00062 25.9 7.0 88 16-107 95-189 (275)
83 PF01026 TatD_DNase: TatD rela 70.1 16 0.00035 26.7 5.6 98 4-106 124-232 (255)
84 PRK06124 gluconate 5-dehydroge 69.5 37 0.00081 24.0 8.4 94 6-101 12-115 (256)
85 PRK07478 short chain dehydroge 69.5 37 0.00081 24.0 8.3 94 7-102 8-112 (254)
86 COG0646 MetH Methionine syntha 69.3 6.7 0.00015 30.3 3.5 78 18-101 149-242 (311)
87 PF03932 CutC: CutC family; I 69.0 20 0.00044 25.9 5.8 80 19-106 79-168 (201)
88 PRK13125 trpA tryptophan synth 68.8 28 0.0006 25.5 6.6 59 4-63 74-142 (244)
89 COG0119 LeuA Isopropylmalate/h 68.5 32 0.0007 27.6 7.3 61 48-108 94-158 (409)
90 PRK07709 fructose-bisphosphate 68.2 10 0.00022 29.0 4.2 72 4-77 203-280 (285)
91 PRK12738 kbaY tagatose-bisphos 67.8 11 0.00023 28.8 4.3 73 4-78 202-280 (286)
92 PRK13209 L-xylulose 5-phosphat 67.7 33 0.00071 25.1 6.8 17 16-32 25-41 (283)
93 cd00530 PTE Phosphotriesterase 67.6 27 0.00058 25.7 6.4 86 3-89 148-247 (293)
94 PRK12737 gatY tagatose-bisphos 67.5 11 0.00024 28.7 4.3 72 4-77 202-279 (284)
95 TIGR02717 AcCoA-syn-alpha acet 67.5 24 0.00053 28.3 6.5 93 16-108 25-120 (447)
96 PRK12344 putative alpha-isopro 67.3 39 0.00085 27.8 7.8 50 59-108 118-170 (524)
97 smart00653 eIF2B_5 domain pres 67.1 8.8 0.00019 25.2 3.3 54 36-95 34-93 (110)
98 cd00331 IGPS Indole-3-glycerol 66.9 13 0.00029 26.4 4.5 65 4-69 72-138 (217)
99 PF01261 AP_endonuc_2: Xylose 66.8 19 0.00042 24.4 5.2 88 18-105 1-114 (213)
100 PF11592 AvrPto: Central core 66.6 13 0.00028 24.3 3.8 61 48-108 27-88 (105)
101 TIGR00259 thylakoid_BtpA membr 65.8 42 0.00091 25.3 7.1 74 25-108 171-255 (257)
102 PRK01222 N-(5'-phosphoribosyl) 65.6 28 0.00061 25.0 6.0 44 61-108 164-208 (210)
103 CHL00200 trpA tryptophan synth 65.6 34 0.00074 25.6 6.6 27 5-31 16-48 (263)
104 PTZ00273 oxidase reductase; Pr 65.1 9.7 0.00021 29.0 3.7 44 61-108 18-61 (320)
105 PRK06935 2-deoxy-D-gluconate 3 65.0 48 0.001 23.6 8.7 94 7-102 17-119 (258)
106 PF07021 MetW: Methionine bios 64.8 12 0.00027 27.0 3.9 52 3-56 13-67 (193)
107 PRK11449 putative deoxyribonuc 64.2 54 0.0012 24.2 7.4 81 3-89 126-210 (258)
108 PRK05867 short chain dehydroge 64.1 49 0.0011 23.4 8.3 95 6-102 10-114 (253)
109 PRK07998 gatY putative fructos 64.0 15 0.00032 28.0 4.4 73 4-78 199-277 (283)
110 PF11823 DUF3343: Protein of u 63.9 4.4 9.5E-05 24.2 1.3 29 79-108 34-62 (73)
111 PRK12857 fructose-1,6-bisphosp 63.8 14 0.00031 28.0 4.3 72 4-77 202-279 (284)
112 PRK07109 short chain dehydroge 63.6 62 0.0014 24.5 7.9 94 7-102 10-113 (334)
113 TIGR01858 tag_bisphos_ald clas 63.6 14 0.0003 28.1 4.2 72 4-77 200-277 (282)
114 PRK13111 trpA tryptophan synth 63.3 39 0.00084 25.3 6.5 97 3-108 88-198 (258)
115 PF12847 Methyltransf_18: Meth 63.3 27 0.00058 21.4 4.9 49 5-53 3-61 (112)
116 PLN03228 methylthioalkylmalate 63.3 74 0.0016 26.3 8.6 51 59-109 201-252 (503)
117 KOG0258|consensus 63.2 12 0.00027 30.2 4.0 49 61-109 199-248 (475)
118 PRK05835 fructose-bisphosphate 62.9 16 0.00034 28.3 4.4 60 17-78 240-303 (307)
119 TIGR01302 IMP_dehydrog inosine 62.6 38 0.00083 27.2 6.8 40 16-55 227-275 (450)
120 PRK08610 fructose-bisphosphate 61.9 16 0.00034 27.9 4.2 72 4-77 203-280 (286)
121 TIGR00973 leuA_bact 2-isopropy 61.6 89 0.0019 25.6 9.0 74 35-108 76-158 (494)
122 PRK09195 gatY tagatose-bisphos 61.4 16 0.00034 27.8 4.2 72 4-77 202-279 (284)
123 PLN00417 oxidoreductase, 2OG-F 61.3 12 0.00026 29.0 3.6 39 66-108 61-99 (348)
124 PLN02758 oxidoreductase, 2OG-F 61.0 14 0.00031 28.8 4.0 45 60-108 64-108 (361)
125 PRK07985 oxidoreductase; Provi 61.0 65 0.0014 23.8 7.5 94 7-102 51-157 (294)
126 COG2227 UbiG 2-polyprenyl-3-me 60.9 41 0.0009 25.2 6.2 72 3-74 59-152 (243)
127 PLN03176 flavanone-3-hydroxyla 60.8 15 0.00033 24.1 3.6 38 67-108 55-92 (120)
128 PRK07791 short chain dehydroge 60.6 64 0.0014 23.6 7.9 94 7-102 8-120 (286)
129 PLN02591 tryptophan synthase 60.6 48 0.001 24.7 6.6 97 4-108 78-187 (250)
130 PRK06603 enoyl-(acyl carrier p 60.5 61 0.0013 23.3 8.2 85 17-103 26-119 (260)
131 PRK11579 putative oxidoreducta 60.3 74 0.0016 24.2 9.1 100 1-108 1-114 (346)
132 PRK06106 nicotinate-nucleotide 60.0 13 0.00029 28.3 3.6 55 36-104 203-258 (281)
133 PF00478 IMPDH: IMP dehydrogen 59.8 6.3 0.00014 31.0 1.8 40 16-55 111-159 (352)
134 PRK08385 nicotinate-nucleotide 59.8 23 0.0005 26.9 4.8 51 49-104 199-251 (278)
135 PF06073 DUF934: Bacterial pro 59.3 15 0.00032 24.2 3.2 40 16-55 61-102 (110)
136 cd00947 TBP_aldolase_IIB Tagat 59.1 19 0.00041 27.3 4.2 72 4-77 196-273 (276)
137 PRK10812 putative DNAse; Provi 58.9 72 0.0016 23.7 8.0 80 3-88 123-207 (265)
138 TIGR00167 cbbA ketose-bisphosp 58.8 19 0.00041 27.5 4.2 72 4-77 206-283 (288)
139 PRK07677 short chain dehydroge 57.7 65 0.0014 22.8 7.9 86 16-103 16-107 (252)
140 KOG4175|consensus 57.7 77 0.0017 23.6 7.1 30 2-31 16-51 (268)
141 TIGR02086 IPMI_arch 3-isopropy 57.6 17 0.00038 29.2 4.0 73 17-89 277-356 (412)
142 COG0800 Eda 2-keto-3-deoxy-6-p 57.2 75 0.0016 23.3 7.0 61 16-87 29-94 (211)
143 PTZ00314 inosine-5'-monophosph 57.2 28 0.0006 28.5 5.2 39 16-54 244-291 (495)
144 PRK06096 molybdenum transport 57.0 20 0.00044 27.3 4.1 58 36-104 198-256 (284)
145 cd07941 DRE_TIM_LeuA3 Desulfob 56.8 79 0.0017 23.5 7.2 16 62-77 114-129 (273)
146 PRK06484 short chain dehydroge 56.7 99 0.0022 24.6 9.0 92 6-102 6-109 (520)
147 TIGR03842 F420_CPS_4043 F420-d 56.3 16 0.00035 27.8 3.5 43 58-105 284-326 (330)
148 cd04724 Tryptophan_synthase_al 55.9 21 0.00045 26.2 3.9 96 4-108 76-185 (242)
149 PRK07024 short chain dehydroge 55.9 72 0.0016 22.7 8.3 94 7-103 4-108 (257)
150 PRK08226 short chain dehydroge 55.8 71 0.0015 22.6 8.1 70 16-87 21-92 (263)
151 KOG2811|consensus 55.6 25 0.00054 28.2 4.4 63 37-100 343-413 (420)
152 PRK07063 short chain dehydroge 55.6 72 0.0016 22.6 7.8 95 7-101 9-113 (260)
153 PRK06139 short chain dehydroge 55.4 90 0.002 23.7 8.5 95 7-103 9-113 (330)
154 TIGR01520 FruBisAldo_II_A fruc 55.3 33 0.00072 27.1 5.1 75 4-78 257-353 (357)
155 PLN02276 gibberellin 20-oxidas 55.2 24 0.00052 27.5 4.3 45 60-108 52-96 (361)
156 TIGR00311 aIF-2beta translatio 55.1 19 0.00041 24.5 3.3 53 37-95 53-110 (133)
157 COG0084 TatD Mg-dependent DNas 55.0 36 0.00078 25.5 5.1 68 3-71 124-194 (256)
158 TIGR00262 trpA tryptophan synt 55.0 65 0.0014 23.9 6.5 98 4-108 87-196 (256)
159 PRK08643 acetoin reductase; Va 54.6 74 0.0016 22.5 8.0 78 7-86 4-88 (256)
160 cd00423 Pterin_binding Pterin 54.3 16 0.00034 27.0 3.1 45 59-106 20-72 (258)
161 smart00729 Elp3 Elongator prot 54.2 37 0.0008 22.8 4.8 11 94-104 99-109 (216)
162 PRK08185 hypothetical protein; 54.1 26 0.00056 26.7 4.2 73 4-78 198-276 (283)
163 PLN03178 leucoanthocyanidin di 54.0 11 0.00025 29.3 2.4 45 60-108 59-103 (360)
164 PRK06128 oxidoreductase; Provi 53.8 87 0.0019 23.0 7.6 95 7-103 57-164 (300)
165 PRK13111 trpA tryptophan synth 53.3 93 0.002 23.2 7.4 27 5-31 13-45 (258)
166 TIGR03621 F420_MSMEG_2516 prob 53.2 26 0.00057 26.5 4.2 29 57-85 253-281 (295)
167 PRK05848 nicotinate-nucleotide 53.2 30 0.00066 26.2 4.5 40 59-104 210-249 (273)
168 PRK12330 oxaloacetate decarbox 53.1 1.2E+02 0.0026 25.1 8.1 84 17-107 102-195 (499)
169 PF03198 Glyco_hydro_72: Gluca 53.0 36 0.00078 26.5 4.9 88 18-105 59-161 (314)
170 TIGR01334 modD putative molybd 52.9 27 0.00059 26.5 4.2 59 36-105 197-256 (277)
171 TIGR01019 sucCoAalpha succinyl 52.9 33 0.00072 26.1 4.7 96 5-109 7-114 (286)
172 TIGR01521 FruBisAldo_II_B fruc 52.9 27 0.00058 27.5 4.2 60 17-78 260-323 (347)
173 cd01585 AcnA_Bact Aconitase ca 52.9 23 0.00049 28.2 3.9 73 17-89 251-330 (380)
174 cd00959 DeoC 2-deoxyribose-5-p 52.8 80 0.0017 22.3 6.8 86 18-106 75-172 (203)
175 COG1832 Predicted CoA-binding 52.6 44 0.00095 23.0 4.8 67 16-86 34-106 (140)
176 PRK08993 2-deoxy-D-gluconate 3 52.5 82 0.0018 22.4 7.6 94 7-103 12-114 (253)
177 PF10147 CR6_interact: Growth 52.4 12 0.00026 27.5 2.2 37 32-68 54-90 (217)
178 TIGR01343 hacA_fam homoaconita 52.4 25 0.00054 28.3 4.1 73 17-89 278-357 (412)
179 cd00405 PRAI Phosphoribosylant 52.1 80 0.0017 22.1 6.8 41 61-105 162-203 (203)
180 TIGR00542 hxl6Piso_put hexulos 52.0 82 0.0018 23.0 6.6 16 16-31 20-35 (279)
181 PRK08213 gluconate 5-dehydroge 51.9 84 0.0018 22.3 7.7 82 16-99 27-114 (259)
182 PRK13958 N-(5'-phosphoribosyl) 51.7 46 0.001 23.9 5.1 45 61-108 162-206 (207)
183 PF13561 adh_short_C2: Enoyl-( 50.9 53 0.0011 23.2 5.3 81 16-103 11-106 (241)
184 TIGR00433 bioB biotin syntheta 50.9 23 0.0005 26.2 3.6 12 61-72 63-74 (296)
185 PRK05876 short chain dehydroge 50.6 96 0.0021 22.6 7.9 84 16-101 21-110 (275)
186 PRK06559 nicotinate-nucleotide 50.3 25 0.00054 27.0 3.6 44 52-104 217-261 (290)
187 cd03174 DRE_TIM_metallolyase D 50.2 93 0.002 22.3 8.1 28 5-32 67-94 (265)
188 COG1228 HutI Imidazolonepropio 50.2 55 0.0012 26.1 5.7 100 2-105 231-332 (406)
189 TIGR02967 guan_deamin guanine 50.1 1.2E+02 0.0025 23.5 8.1 88 19-108 97-198 (401)
190 TIGR01212 radical SAM protein, 50.1 21 0.00045 27.1 3.2 46 62-107 59-105 (302)
191 PLN02363 phosphoribosylanthran 49.6 36 0.00079 25.4 4.4 44 61-108 209-254 (256)
192 COG3749 Uncharacterized protei 49.3 19 0.00042 25.4 2.7 41 16-56 116-158 (167)
193 COG3964 Predicted amidohydrola 49.3 27 0.00059 27.5 3.7 60 28-91 189-252 (386)
194 cd00453 FTBP_aldolase_II Fruct 49.2 44 0.00096 26.3 4.9 74 4-77 242-337 (340)
195 PLN02771 carbamoyl-phosphate s 49.0 44 0.00095 27.0 5.0 38 5-42 241-279 (415)
196 PRK07523 gluconate 5-dehydroge 48.6 95 0.002 21.9 8.2 82 16-99 25-112 (255)
197 KOG4013|consensus 48.0 26 0.00057 25.8 3.3 51 43-103 148-199 (255)
198 TIGR01303 IMP_DH_rel_1 IMP deh 47.6 63 0.0014 26.4 5.8 41 15-55 227-276 (475)
199 cd00958 DhnA Class I fructose- 47.3 91 0.002 22.3 6.1 78 21-105 152-234 (235)
200 PRK07454 short chain dehydroge 47.3 96 0.0021 21.6 8.0 85 16-102 21-111 (241)
201 PRK08277 D-mannonate oxidoredu 47.2 1E+02 0.0023 22.1 8.2 79 6-86 11-96 (278)
202 TIGR02351 thiH thiazole biosyn 47.2 45 0.00098 26.0 4.8 46 61-108 104-149 (366)
203 PF01116 F_bP_aldolase: Fructo 46.9 17 0.00037 27.6 2.3 73 4-78 205-283 (287)
204 PRK05855 short chain dehydroge 46.9 1.5E+02 0.0031 23.6 7.9 86 16-103 330-421 (582)
205 COG1999 Uncharacterized protei 46.8 32 0.0007 24.7 3.6 43 29-75 110-154 (207)
206 TIGR03565 alk_sulf_monoox alka 46.4 49 0.0011 25.5 4.8 43 56-105 300-342 (346)
207 TIGR01305 GMP_reduct_1 guanosi 46.4 20 0.00044 28.2 2.7 40 16-55 110-160 (343)
208 KOG2792|consensus 46.4 21 0.00046 27.2 2.7 43 28-75 181-225 (280)
209 PRK07695 transcriptional regul 46.3 75 0.0016 22.2 5.5 27 82-108 173-200 (201)
210 PRK07315 fructose-bisphosphate 46.2 52 0.0011 25.1 4.8 72 27-104 80-165 (293)
211 PRK09197 fructose-bisphosphate 46.1 46 0.001 26.3 4.6 75 3-77 248-344 (350)
212 PRK08508 biotin synthase; Prov 46.1 47 0.001 24.8 4.5 45 61-107 41-86 (279)
213 COG2100 Predicted Fe-S oxidore 45.9 94 0.002 24.8 6.2 20 89-108 264-283 (414)
214 TIGR03471 HpnJ hopanoid biosyn 45.9 1.4E+02 0.003 23.9 7.5 42 61-107 321-364 (472)
215 COG0137 ArgG Argininosuccinate 45.8 1.2E+02 0.0025 24.6 6.8 97 4-108 5-111 (403)
216 cd00740 MeTr MeTr subgroup of 45.7 47 0.001 24.7 4.5 46 59-107 22-67 (252)
217 PRK09613 thiH thiamine biosynt 45.6 47 0.001 27.1 4.7 45 61-107 116-160 (469)
218 PF00697 PRAI: N-(5'phosphorib 45.5 14 0.00031 26.1 1.6 46 48-104 151-197 (197)
219 PRK00208 thiG thiazole synthas 45.5 1.3E+02 0.0028 22.7 6.7 94 2-107 121-226 (250)
220 PRK08573 phosphomethylpyrimidi 44.9 70 0.0015 25.6 5.6 65 9-73 360-447 (448)
221 cd01306 PhnM PhnM is believed 44.8 73 0.0016 24.6 5.5 79 2-87 174-255 (325)
222 PRK07028 bifunctional hexulose 44.8 82 0.0018 25.0 6.0 17 92-108 197-213 (430)
223 TIGR01496 DHPS dihydropteroate 44.6 73 0.0016 23.6 5.4 53 52-107 7-72 (257)
224 cd01310 TatD_DNAse TatD like p 44.6 1.1E+02 0.0024 21.5 7.3 81 3-88 120-203 (251)
225 PRK08862 short chain dehydroge 44.5 1.1E+02 0.0024 21.6 8.8 79 6-86 6-92 (227)
226 cd01351 Aconitase Aconitase ca 44.4 40 0.00086 26.8 4.1 69 21-89 263-338 (389)
227 cd01583 IPMI 3-isopropylmalate 44.3 27 0.00059 27.8 3.1 72 18-89 253-331 (382)
228 PLN02485 oxidoreductase 44.3 43 0.00092 25.6 4.2 40 65-108 31-70 (329)
229 PRK06505 enoyl-(acyl carrier p 44.3 1.2E+02 0.0026 22.0 8.0 86 16-103 24-118 (271)
230 PRK12481 2-deoxy-D-gluconate 3 44.0 1.2E+02 0.0025 21.6 8.0 92 6-100 9-109 (251)
231 PRK09427 bifunctional indole-3 43.9 59 0.0013 26.5 5.0 43 61-108 411-454 (454)
232 PRK05854 short chain dehydroge 43.9 1.3E+02 0.0029 22.3 6.9 92 7-100 16-118 (313)
233 cd06596 GH31_CPE1046 CPE1046 i 43.8 24 0.00052 26.7 2.6 45 58-108 36-87 (261)
234 PRK07097 gluconate 5-dehydroge 43.7 1.2E+02 0.0026 21.6 8.5 86 16-103 25-116 (265)
235 PRK12745 3-ketoacyl-(acyl-carr 43.6 1.1E+02 0.0024 21.4 7.7 79 7-87 4-90 (256)
236 PF02836 Glyco_hydro_2_C: Glyc 43.4 40 0.00087 25.1 3.8 87 18-107 42-147 (298)
237 TIGR03554 F420_G6P_DH glucose- 43.3 42 0.00092 25.6 4.0 43 58-105 284-326 (331)
238 PF02126 PTE: Phosphotriestera 43.2 71 0.0015 24.5 5.2 72 4-76 155-247 (308)
239 PRK13399 fructose-1,6-bisphosp 43.2 46 0.001 26.2 4.2 59 18-78 263-325 (347)
240 PRK09875 putative hydrolase; P 43.2 1.5E+02 0.0032 22.6 8.5 89 3-94 151-249 (292)
241 cd07942 DRE_TIM_LeuA Mycobacte 43.1 1.5E+02 0.0032 22.5 8.2 50 59-108 112-168 (284)
242 PRK06843 inosine 5-monophospha 43.0 32 0.00069 27.6 3.4 40 16-55 156-204 (404)
243 PRK07062 short chain dehydroge 42.9 1.2E+02 0.0026 21.5 7.8 96 7-102 10-115 (265)
244 PRK00402 3-isopropylmalate deh 42.8 36 0.00079 27.4 3.7 72 18-89 282-360 (418)
245 PRK00081 coaE dephospho-CoA ki 42.5 46 0.00099 23.3 3.8 54 13-66 14-82 (194)
246 PRK06914 short chain dehydroge 42.5 1.3E+02 0.0027 21.6 8.1 83 16-99 18-106 (280)
247 PRK06978 nicotinate-nucleotide 42.4 47 0.001 25.5 4.1 55 36-104 214-269 (294)
248 COG0352 ThiE Thiamine monophos 42.4 25 0.00054 25.7 2.5 30 18-47 74-104 (211)
249 PRK06114 short chain dehydroge 42.3 1.2E+02 0.0026 21.4 7.9 95 6-102 9-114 (254)
250 PLN02639 oxidoreductase, 2OG-F 42.3 39 0.00084 26.0 3.7 39 66-108 49-87 (337)
251 COG1105 FruK Fructose-1-phosph 42.2 75 0.0016 24.7 5.2 48 61-109 112-159 (310)
252 PRK09061 D-glutamate deacylase 42.1 70 0.0015 26.1 5.3 48 61-109 164-212 (509)
253 PRK04302 triosephosphate isome 41.9 52 0.0011 23.6 4.1 84 17-107 77-169 (223)
254 PLN02393 leucoanthocyanidin di 41.8 47 0.001 25.9 4.1 45 60-108 63-107 (362)
255 TIGR00433 bioB biotin syntheta 41.7 1.4E+02 0.003 22.0 8.3 16 17-32 125-140 (296)
256 cd00946 FBP_aldolase_IIA Class 41.7 56 0.0012 25.7 4.5 74 4-77 245-340 (345)
257 cd00945 Aldolase_Class_I Class 41.7 1.1E+02 0.0023 20.6 5.7 17 17-33 18-34 (201)
258 PLN02299 1-aminocyclopropane-1 41.6 42 0.0009 25.8 3.7 38 67-108 22-59 (321)
259 TIGR02083 LEU2 3-isopropylmala 41.5 49 0.0011 26.7 4.2 67 23-89 289-362 (419)
260 PRK03988 translation initiatio 41.4 40 0.00087 23.0 3.2 52 38-95 59-115 (138)
261 PRK12824 acetoacetyl-CoA reduc 41.3 1.2E+02 0.0026 21.0 8.1 70 16-86 17-89 (245)
262 COG0157 NadC Nicotinate-nucleo 41.2 47 0.001 25.4 3.9 46 52-104 208-254 (280)
263 PLN02562 UDP-glycosyltransfera 41.2 1.5E+02 0.0032 23.8 6.9 88 7-106 349-448 (448)
264 PRK06256 biotin synthase; Vali 41.1 47 0.001 25.2 3.9 47 60-107 91-137 (336)
265 PF00290 Trp_syntA: Tryptophan 41.1 1.3E+02 0.0027 22.7 6.1 97 3-108 86-196 (259)
266 PRK08445 hypothetical protein; 41.0 63 0.0014 25.1 4.7 45 61-108 74-118 (348)
267 cd06112 citrate_synt_like_1_1 40.9 62 0.0013 25.5 4.7 55 48-106 217-276 (373)
268 PTZ00300 pyruvate kinase; Prov 40.8 1E+02 0.0022 25.2 5.9 78 16-101 151-233 (454)
269 PF02581 TMP-TENI: Thiamine mo 40.7 55 0.0012 22.6 4.0 31 17-47 64-95 (180)
270 PRK06543 nicotinate-nucleotide 40.7 43 0.00092 25.6 3.6 55 36-104 202-257 (281)
271 PRK01130 N-acetylmannosamine-6 40.6 1.3E+02 0.0027 21.4 5.9 22 13-34 76-97 (221)
272 PLN02912 oxidoreductase, 2OG-F 40.4 34 0.00074 26.5 3.1 38 67-108 57-94 (348)
273 PRK07455 keto-hydroxyglutarate 40.4 1.2E+02 0.0027 21.2 5.8 13 92-104 160-172 (187)
274 cd01581 AcnB Aconitate hydrata 40.2 54 0.0012 26.6 4.3 72 17-89 310-387 (436)
275 PRK12823 benD 1,6-dihydroxycyc 40.0 1.3E+02 0.0029 21.2 7.7 78 7-86 10-93 (260)
276 PRK15108 biotin synthase; Prov 39.8 1.8E+02 0.0038 22.6 7.2 85 4-106 124-211 (345)
277 PRK05926 hypothetical protein; 39.8 65 0.0014 25.3 4.6 45 60-108 99-143 (370)
278 PF08503 DapH_N: Tetrahydrodip 39.7 19 0.00042 22.5 1.3 22 50-71 38-59 (83)
279 KOG1208|consensus 39.6 1.3E+02 0.0028 23.1 6.2 78 16-93 50-130 (314)
280 PRK02271 methylenetetrahydrome 39.5 39 0.00085 25.6 3.3 44 58-105 281-324 (325)
281 cd02072 Glm_B12_BD B12 binding 39.5 1.2E+02 0.0025 20.4 5.8 24 21-44 23-46 (128)
282 PRK07226 fructose-bisphosphate 39.2 1.3E+02 0.0027 22.3 5.9 82 19-107 167-253 (267)
283 PRK05927 hypothetical protein; 39.1 73 0.0016 24.8 4.8 45 60-107 76-120 (350)
284 PF01121 CoaE: Dephospho-CoA k 39.0 24 0.00052 24.8 1.9 53 12-64 11-78 (180)
285 PRK07533 enoyl-(acyl carrier p 38.9 1.4E+02 0.0031 21.3 9.2 81 16-102 27-120 (258)
286 PRK07984 enoyl-(acyl carrier p 38.9 1.5E+02 0.0033 21.5 8.2 69 17-87 24-94 (262)
287 cd06110 BSuCS-II_like Bacillus 38.8 70 0.0015 25.0 4.6 41 60-104 230-270 (356)
288 PRK07890 short chain dehydroge 38.7 1.4E+02 0.003 21.0 8.6 69 16-86 20-91 (258)
289 PRK06484 short chain dehydroge 38.7 2E+02 0.0043 22.9 8.3 92 7-103 271-373 (520)
290 PRK08444 hypothetical protein; 38.7 72 0.0016 24.9 4.7 44 61-107 81-124 (353)
291 PRK08278 short chain dehydroge 38.5 1.5E+02 0.0033 21.4 9.2 84 16-101 21-117 (273)
292 PLN02515 naringenin,2-oxogluta 38.5 51 0.0011 25.7 3.8 39 66-108 54-92 (358)
293 PRK11207 tellurite resistance 38.4 1.4E+02 0.003 20.9 6.1 77 5-81 32-129 (197)
294 TIGR00683 nanA N-acetylneurami 38.4 51 0.0011 24.7 3.8 24 53-76 103-126 (290)
295 PF01873 eIF-5_eIF-2B: Domain 38.4 15 0.00032 24.6 0.7 52 36-93 47-104 (125)
296 KOG1383|consensus 38.4 37 0.0008 27.9 3.1 52 32-84 203-264 (491)
297 PF13486 Dehalogenase: Reducti 38.3 26 0.00057 26.8 2.2 18 92-109 138-155 (308)
298 PRK09195 gatY tagatose-bisphos 38.2 1.7E+02 0.0036 22.3 6.5 73 27-104 77-166 (284)
299 TIGR03128 RuMP_HxlA 3-hexulose 38.2 97 0.0021 21.6 5.0 16 17-33 17-32 (206)
300 TIGR01949 AroFGH_arch predicte 38.1 1.3E+02 0.0029 22.0 5.9 80 21-107 165-249 (258)
301 PRK05458 guanosine 5'-monophos 37.8 75 0.0016 24.7 4.6 39 16-54 100-149 (326)
302 TIGR01501 MthylAspMutase methy 37.8 1.3E+02 0.0028 20.3 6.4 15 89-103 115-129 (134)
303 PLN03002 oxidoreductase, 2OG-F 37.4 49 0.0011 25.5 3.5 38 67-108 27-64 (332)
304 PRK00719 alkanesulfonate monoo 37.2 72 0.0016 24.9 4.5 42 57-105 302-343 (378)
305 cd00003 PNPsynthase Pyridoxine 37.1 98 0.0021 23.1 4.9 80 16-102 114-200 (234)
306 TIGR00262 trpA tryptophan synt 37.1 1.7E+02 0.0037 21.6 7.3 27 5-31 11-43 (256)
307 COG0502 BioB Biotin synthase a 37.1 74 0.0016 25.0 4.5 46 60-107 84-129 (335)
308 PRK14429 acylphosphatase; Prov 37.1 51 0.0011 20.5 3.0 13 60-72 48-60 (90)
309 TIGR00693 thiE thiamine-phosph 37.0 1.3E+02 0.0028 20.7 5.4 27 18-44 66-93 (196)
310 TIGR03741 PRTRC_E PRTRC system 36.8 41 0.00088 21.9 2.6 26 51-76 41-67 (104)
311 cd00377 ICL_PEPM Members of th 36.8 1.5E+02 0.0032 21.8 5.9 82 17-105 89-195 (243)
312 PF05206 TRM13: Methyltransfer 36.7 29 0.00062 26.1 2.1 39 60-98 211-254 (259)
313 PF03460 NIR_SIR_ferr: Nitrite 36.7 33 0.00071 19.7 2.0 47 61-108 22-69 (69)
314 PRK07807 inosine 5-monophospha 36.7 43 0.00093 27.4 3.3 40 16-55 230-278 (479)
315 COG1099 Predicted metal-depend 36.6 1.7E+02 0.0036 22.1 6.0 85 3-94 126-219 (254)
316 PRK07094 biotin synthase; Prov 36.6 1.8E+02 0.004 21.8 6.8 14 61-74 163-176 (323)
317 PRK12336 translation initiatio 36.5 51 0.0011 23.7 3.3 53 37-95 54-111 (201)
318 cd06106 ScCit3_like Saccharomy 36.5 62 0.0013 26.2 4.1 33 61-96 293-325 (428)
319 TIGR03551 F420_cofH 7,8-dideme 36.4 88 0.0019 24.0 4.8 46 60-108 70-115 (343)
320 TIGR03699 mena_SCO4550 menaqui 36.4 85 0.0018 23.9 4.7 45 60-107 72-116 (340)
321 PRK12466 isopropylmalate isome 36.3 46 0.001 27.2 3.4 68 22-89 337-411 (471)
322 PRK06079 enoyl-(acyl carrier p 36.2 1.6E+02 0.0034 21.0 7.8 83 16-102 24-115 (252)
323 KOG2918|consensus 36.1 34 0.00074 26.8 2.5 33 59-91 65-100 (335)
324 cd06117 Ec2MCS_like_1 Subgroup 36.1 77 0.0017 25.0 4.5 46 48-96 214-264 (366)
325 PRK08203 hydroxydechloroatrazi 36.0 1.2E+02 0.0026 24.0 5.6 56 53-109 167-227 (451)
326 PRK07226 fructose-bisphosphate 35.8 39 0.00084 25.1 2.7 30 79-108 20-51 (267)
327 TIGR01418 PEP_synth phosphoeno 35.7 2.4E+02 0.0052 24.6 7.7 93 4-104 662-758 (782)
328 PRK13394 3-hydroxybutyrate deh 35.6 1.6E+02 0.0034 20.7 7.6 93 6-100 8-110 (262)
329 PRK12939 short chain dehydroge 35.5 1.5E+02 0.0033 20.5 8.5 70 16-87 22-94 (250)
330 PRK06512 thiamine-phosphate py 35.5 41 0.00088 24.5 2.7 30 18-47 80-110 (221)
331 PRK08645 bifunctional homocyst 35.5 2.2E+02 0.0048 23.9 7.3 85 16-107 188-287 (612)
332 TIGR03555 F420_mer 5,10-methyl 35.4 53 0.0011 24.9 3.4 43 58-104 280-322 (325)
333 cd06109 BsCS-I_like Bacillus s 35.2 82 0.0018 24.7 4.5 45 48-95 202-251 (349)
334 COG0770 MurF UDP-N-acetylmuram 35.2 29 0.00062 28.2 2.0 55 32-86 165-223 (451)
335 PF03656 Pam16: Pam16; InterP 35.1 68 0.0015 21.6 3.6 34 34-77 54-87 (127)
336 PRK07035 short chain dehydroge 35.1 1.6E+02 0.0034 20.7 8.5 93 7-101 10-113 (252)
337 PF11815 DUF3336: Domain of un 35.1 88 0.0019 21.2 4.2 49 50-106 90-143 (145)
338 TIGR03325 BphB_TodD cis-2,3-di 34.8 1.7E+02 0.0036 20.8 7.7 76 6-86 6-88 (262)
339 PRK08085 gluconate 5-dehydroge 34.8 1.6E+02 0.0035 20.7 8.1 84 16-101 24-113 (254)
340 PRK12335 tellurite resistance 34.7 1.7E+02 0.0036 21.7 6.0 76 6-81 123-218 (287)
341 PRK14538 putative bifunctional 34.6 43 0.00093 29.4 3.1 39 68-106 641-679 (838)
342 PRK06801 hypothetical protein; 34.6 78 0.0017 24.1 4.2 72 4-77 203-281 (286)
343 PRK12937 short chain dehydroge 34.5 1.6E+02 0.0034 20.4 8.2 69 16-86 20-92 (245)
344 TIGR00977 LeuA_rel 2-isopropyl 34.5 2.4E+02 0.0052 23.4 7.3 50 59-108 114-166 (526)
345 PRK09016 quinolinate phosphori 34.5 87 0.0019 24.1 4.4 44 52-104 228-272 (296)
346 TIGR02082 metH 5-methyltetrahy 34.5 1.5E+02 0.0032 27.3 6.4 87 17-109 218-316 (1178)
347 PF00764 Arginosuc_synth: Argi 34.5 76 0.0016 25.4 4.2 94 7-108 1-104 (388)
348 PLN02403 aminocyclopropanecarb 34.4 66 0.0014 24.5 3.8 37 68-108 19-55 (303)
349 PRK07094 biotin synthase; Prov 34.4 1E+02 0.0022 23.2 4.8 44 61-107 71-114 (323)
350 PRK14847 hypothetical protein; 34.4 2.3E+02 0.0049 22.2 8.0 49 59-107 143-198 (333)
351 PRK07428 nicotinate-nucleotide 34.4 1E+02 0.0023 23.5 4.9 39 60-104 225-263 (288)
352 COG2006 Uncharacterized conser 34.0 1.1E+02 0.0024 23.6 4.9 49 60-109 11-74 (293)
353 cd02911 arch_FMN Archeal FMN-b 34.0 79 0.0017 23.1 4.0 40 4-43 139-188 (233)
354 PLN02410 UDP-glucoronosyl/UDP- 33.9 1.7E+02 0.0037 23.6 6.2 92 7-107 345-450 (451)
355 TIGR02495 NrdG2 anaerobic ribo 33.9 1.5E+02 0.0033 20.2 7.0 17 92-108 166-182 (191)
356 PRK09490 metH B12-dependent me 33.8 1.9E+02 0.0042 26.7 7.0 86 17-109 234-332 (1229)
357 PLN02858 fructose-bisphosphate 33.8 93 0.002 28.9 5.2 71 3-77 1300-1373(1378)
358 PRK12350 citrate synthase 2; P 33.7 86 0.0019 24.7 4.4 46 48-96 201-251 (353)
359 PRK08159 enoyl-(acyl carrier p 33.7 1.9E+02 0.004 21.0 7.8 86 16-103 27-121 (272)
360 PRK12351 methylcitrate synthas 33.5 94 0.002 24.7 4.6 46 48-96 223-273 (378)
361 COG2159 Predicted metal-depend 33.5 1.3E+02 0.0027 22.8 5.2 84 18-107 55-155 (293)
362 PRK08649 inosine 5-monophospha 33.5 2.4E+02 0.0052 22.2 6.9 19 15-33 144-162 (368)
363 CHL00200 trpA tryptophan synth 33.3 1.3E+02 0.0029 22.4 5.3 98 4-108 91-200 (263)
364 PRK10258 biotin biosynthesis p 33.3 1.5E+02 0.0032 21.3 5.4 49 5-53 44-94 (251)
365 PRK12935 acetoacetyl-CoA reduc 33.0 1.7E+02 0.0037 20.4 7.7 81 6-87 7-94 (247)
366 PRK00043 thiE thiamine-phospha 32.8 1.7E+02 0.0036 20.2 6.6 16 92-107 195-210 (212)
367 TIGR02415 23BDH acetoin reduct 32.8 1.7E+02 0.0038 20.4 7.7 70 16-87 15-87 (254)
368 cd06103 ScCS-like Saccharomyce 32.8 92 0.002 25.1 4.5 33 61-96 293-325 (426)
369 TIGR03854 F420_MSMEG_3544 prob 32.7 95 0.0021 23.3 4.4 51 51-105 234-285 (290)
370 cd01972 Nitrogenase_VnfE_like 32.3 55 0.0012 25.9 3.2 56 48-105 59-115 (426)
371 KOG2550|consensus 32.1 44 0.00094 27.4 2.5 40 16-55 254-302 (503)
372 PLN02704 flavonol synthase 32.1 58 0.0013 25.0 3.2 38 67-108 55-92 (335)
373 PRK07084 fructose-bisphosphate 32.1 75 0.0016 24.7 3.8 59 17-77 253-316 (321)
374 cd08208 RLP_Photo Ribulose bis 32.0 1.3E+02 0.0029 24.3 5.3 82 22-107 308-401 (424)
375 TIGR01108 oadA oxaloacetate de 32.0 3.1E+02 0.0067 23.1 8.0 87 17-107 96-189 (582)
376 TIGR01037 pyrD_sub1_fam dihydr 31.9 1.2E+02 0.0026 22.6 4.8 48 60-107 100-154 (300)
377 PRK14036 citrate synthase; Pro 31.8 93 0.002 24.6 4.3 45 48-95 218-267 (377)
378 PRK06997 enoyl-(acyl carrier p 31.8 1.9E+02 0.0042 20.7 6.7 85 16-103 23-118 (260)
379 PRK04148 hypothetical protein; 31.8 1E+02 0.0022 20.9 4.0 84 5-89 18-114 (134)
380 TIGR00381 cdhD CO dehydrogenas 31.7 1E+02 0.0022 24.7 4.5 18 92-109 222-240 (389)
381 PF02629 CoA_binding: CoA bind 31.7 54 0.0012 20.2 2.5 34 53-86 63-96 (96)
382 PRK09196 fructose-1,6-bisphosp 31.6 91 0.002 24.6 4.2 60 17-78 262-325 (347)
383 cd07947 DRE_TIM_Re_CS Clostrid 31.6 2.3E+02 0.0049 21.4 8.4 41 67-107 149-197 (279)
384 TIGR03700 mena_SCO4494 putativ 31.3 1.1E+02 0.0024 23.6 4.6 45 61-108 80-124 (351)
385 PRK14034 citrate synthase; Pro 31.3 1E+02 0.0022 24.4 4.5 46 48-96 216-266 (372)
386 cd07944 DRE_TIM_HOA_like 4-hyd 31.0 2.2E+02 0.0048 21.1 7.0 98 4-107 71-178 (266)
387 COG1773 Rubredoxin [Energy pro 30.8 25 0.00053 20.4 0.7 14 85-98 20-33 (55)
388 TIGR03583 EF_0837 probable ami 30.8 2.1E+02 0.0047 21.7 6.2 12 80-91 234-245 (365)
389 TIGR03206 benzo_BadH 2-hydroxy 30.8 1.9E+02 0.004 20.1 7.6 70 16-87 18-90 (250)
390 PF03644 Glyco_hydro_85: Glyco 30.7 28 0.00062 26.7 1.3 48 61-108 80-130 (311)
391 PRK06947 glucose-1-dehydrogena 30.7 1.9E+02 0.0041 20.2 7.7 86 16-102 17-109 (248)
392 PRK00517 prmA ribosomal protei 30.6 2.1E+02 0.0046 20.7 7.8 84 3-86 119-213 (250)
393 COG0300 DltE Short-chain dehyd 30.5 2.2E+02 0.0048 21.5 6.0 86 16-103 21-113 (265)
394 PRK06886 hypothetical protein; 30.3 99 0.0022 23.9 4.2 50 60-109 62-112 (329)
395 COG0703 AroK Shikimate kinase 30.3 1.5E+02 0.0033 21.0 4.8 40 61-102 53-93 (172)
396 PLN02321 2-isopropylmalate syn 30.2 1.2E+02 0.0025 25.9 4.9 49 60-108 203-252 (632)
397 PRK07107 inosine 5-monophospha 30.0 2.6E+02 0.0057 23.0 6.8 39 16-54 245-293 (502)
398 PRK09282 pyruvate carboxylase 29.9 3.4E+02 0.0074 22.9 8.5 87 17-107 101-194 (592)
399 PRK07370 enoyl-(acyl carrier p 29.8 2.1E+02 0.0046 20.4 5.8 70 16-87 23-97 (258)
400 PRK00431 RNase III inhibitor; 29.7 1.3E+02 0.0028 20.7 4.4 47 62-108 94-144 (177)
401 PRK14432 acylphosphatase; Prov 29.7 86 0.0019 19.6 3.2 28 79-106 31-62 (93)
402 PTZ00066 pyruvate kinase; Prov 29.7 2.5E+02 0.0055 23.4 6.6 82 19-108 217-307 (513)
403 PF00301 Rubredoxin: Rubredoxi 29.4 18 0.0004 20.1 0.0 13 86-98 19-31 (47)
404 PRK08415 enoyl-(acyl carrier p 29.4 2.3E+02 0.0049 20.7 8.2 96 6-103 6-116 (274)
405 TIGR03620 F420_MSMEG_4141 prob 29.4 75 0.0016 23.9 3.4 44 58-102 232-275 (278)
406 PRK09238 bifunctional aconitat 29.3 94 0.002 27.4 4.2 71 17-89 682-760 (835)
407 COG0269 SgbH 3-hexulose-6-phos 29.2 1.7E+02 0.0036 21.6 5.0 77 17-107 122-214 (217)
408 PF08097 Toxin_26: Conotoxin T 29.2 19 0.0004 13.9 0.0 8 5-12 3-10 (11)
409 PF00128 Alpha-amylase: Alpha 29.1 46 0.001 23.9 2.2 55 13-72 5-61 (316)
410 cd04743 NPD_PKS 2-Nitropropane 29.1 94 0.002 24.2 3.9 45 3-47 81-125 (320)
411 TIGR01430 aden_deam adenosine 29.0 2.5E+02 0.0054 21.1 7.5 48 60-109 137-185 (324)
412 PLN02997 flavonol synthase 28.9 88 0.0019 24.0 3.7 37 68-108 46-82 (325)
413 cd06118 citrate_synt_like_1 Ci 28.9 1E+02 0.0022 24.0 4.2 34 60-96 230-263 (358)
414 PRK07666 fabG 3-ketoacyl-(acyl 28.8 2E+02 0.0044 19.9 7.8 83 16-100 22-110 (239)
415 cd00408 DHDPS-like Dihydrodipi 28.8 95 0.0021 22.8 3.8 22 54-75 100-121 (281)
416 cd02940 DHPD_FMN Dihydropyrimi 28.8 1.3E+02 0.0029 22.5 4.6 46 61-107 111-165 (299)
417 PTZ00333 triosephosphate isome 28.8 1.4E+02 0.0031 22.2 4.7 86 18-107 82-194 (255)
418 PLN02489 homocysteine S-methyl 28.8 1.1E+02 0.0024 23.7 4.2 40 61-107 294-333 (335)
419 PF08784 RPA_C: Replication pr 28.6 51 0.0011 20.5 2.0 23 60-86 77-99 (102)
420 cd04741 DHOD_1A_like Dihydroor 28.6 1.7E+02 0.0037 22.0 5.2 49 59-107 99-154 (294)
421 COG1985 RibD Pyrimidine reduct 28.6 96 0.0021 22.6 3.7 60 5-68 98-158 (218)
422 COG1922 WecG Teichoic acid bio 28.6 89 0.0019 23.5 3.6 47 58-107 113-159 (253)
423 COG3376 HoxN High-affinity nic 28.4 44 0.00096 26.1 2.0 27 62-88 69-98 (342)
424 COG4954 Uncharacterized protei 28.4 69 0.0015 21.3 2.6 37 53-89 55-96 (135)
425 TIGR01342 acon_putative aconit 28.4 93 0.002 26.6 4.0 73 17-89 277-356 (658)
426 TIGR01800 cit_synth_II 2-methy 28.3 1.3E+02 0.0029 23.6 4.7 33 60-95 230-262 (368)
427 PRK06949 short chain dehydroge 28.3 2.1E+02 0.0046 20.0 7.8 86 16-103 24-115 (258)
428 PLN02156 gibberellin 2-beta-di 28.2 83 0.0018 24.4 3.5 36 69-108 38-73 (335)
429 PRK11613 folP dihydropteroate 28.2 1.6E+02 0.0034 22.5 4.9 56 48-106 16-86 (282)
430 PRK14421 acylphosphatase; Prov 28.2 99 0.0021 19.7 3.3 9 60-68 50-58 (99)
431 PRK11572 copper homeostasis pr 28.1 1.1E+02 0.0024 22.9 4.0 25 20-44 81-110 (248)
432 PLN02216 protein SRG1 28.1 91 0.002 24.3 3.7 38 67-108 69-106 (357)
433 cd02908 Macro_Appr_pase_like M 28.0 1.4E+02 0.0031 20.3 4.3 47 62-108 87-137 (165)
434 cd06107 EcCS_AthCS-per_like Es 27.9 1.2E+02 0.0025 24.1 4.3 33 60-95 249-281 (382)
435 KOG0481|consensus 27.9 41 0.00088 28.5 1.8 38 40-78 351-389 (729)
436 PRK09569 type I citrate syntha 27.7 1.3E+02 0.0028 24.5 4.6 33 61-96 294-326 (437)
437 PRK14847 hypothetical protein; 27.7 1.2E+02 0.0027 23.7 4.3 79 4-87 45-134 (333)
438 TIGR01290 nifB nitrogenase cof 27.7 3.3E+02 0.0071 22.0 8.1 39 4-42 110-151 (442)
439 PF04282 DUF438: Family of unk 27.7 1.5E+02 0.0032 18.0 4.1 18 36-55 14-31 (71)
440 COG2606 EbsC Uncharacterized c 27.6 57 0.0012 22.6 2.3 29 29-57 61-104 (155)
441 COG0469 PykF Pyruvate kinase [ 27.6 2.9E+02 0.0062 22.8 6.5 86 17-109 180-274 (477)
442 TIGR00406 prmA ribosomal prote 27.5 2.6E+02 0.0057 20.8 6.2 83 4-86 160-259 (288)
443 PRK09240 thiH thiamine biosynt 27.5 1.5E+02 0.0032 23.2 4.8 47 60-108 104-150 (371)
444 PF01876 RNase_P_p30: RNase P 27.4 91 0.002 20.9 3.2 90 13-102 33-133 (150)
445 cd06115 AthCS_per_like Arabido 27.4 1.3E+02 0.0028 24.2 4.5 46 48-96 252-302 (410)
446 PF14257 DUF4349: Domain of un 27.3 37 0.0008 25.0 1.4 46 63-108 59-117 (262)
447 PRK14035 citrate synthase; Pro 27.3 1.3E+02 0.0029 23.8 4.5 46 48-96 216-266 (371)
448 PRK04452 acetyl-CoA decarbonyl 27.3 1.1E+02 0.0024 23.7 4.0 75 22-109 86-175 (319)
449 TIGR01832 kduD 2-deoxy-D-gluco 27.2 2.2E+02 0.0048 19.8 8.6 79 7-88 7-91 (248)
450 PRK12744 short chain dehydroge 27.1 2.3E+02 0.0049 20.0 8.2 71 16-86 23-98 (257)
451 COG0505 CarA Carbamoylphosphat 27.1 3.1E+02 0.0066 21.9 6.4 60 4-71 179-242 (368)
452 COG1636 Uncharacterized protei 27.0 1.1E+02 0.0025 22.3 3.7 26 6-31 5-33 (204)
453 COG0191 Fba Fructose/tagatose 27.0 1.2E+02 0.0026 23.3 4.1 73 4-78 204-282 (286)
454 PF13167 GTP-bdg_N: GTP-bindin 27.0 1.1E+02 0.0024 19.5 3.3 36 6-41 37-73 (95)
455 PLN02750 oxidoreductase, 2OG-F 26.9 98 0.0021 23.9 3.7 37 68-108 43-79 (345)
456 KOG0622|consensus 26.9 2.8E+02 0.0061 22.7 6.2 67 8-78 126-204 (448)
457 cd02022 DPCK Dephospho-coenzym 26.9 1.7E+02 0.0036 20.0 4.6 53 12-64 10-77 (179)
458 TIGR02403 trehalose_treC alpha 26.9 98 0.0021 25.5 3.9 55 16-75 31-87 (543)
459 cd08788 CARD_NOD2_2_CARD15 Cas 26.8 1.7E+02 0.0036 18.3 4.3 43 65-107 12-57 (81)
460 TIGR01949 AroFGH_arch predicte 26.8 66 0.0014 23.6 2.6 29 80-108 18-48 (258)
461 TIGR00343 pyridoxal 5'-phospha 26.8 1.1E+02 0.0023 23.6 3.8 41 4-44 197-244 (287)
462 COG4352 RPL13 Ribosomal protei 26.8 55 0.0012 21.6 1.9 19 91-109 88-106 (113)
463 cd02903 Macro_BAL_like Macro d 26.8 1.6E+02 0.0034 19.4 4.3 46 63-108 88-137 (137)
464 PLN02150 terpene synthase/cycl 26.7 1.3E+02 0.0028 19.0 3.6 42 61-105 20-61 (96)
465 PLN02365 2-oxoglutarate-depend 26.6 1.1E+02 0.0024 23.1 3.9 36 69-108 18-53 (300)
466 TIGR00798 mtc tricarboxylate c 26.6 58 0.0013 25.4 2.3 29 49-78 22-50 (318)
467 PRK14428 acylphosphatase; Prov 26.6 1E+02 0.0022 19.6 3.1 11 60-70 54-64 (97)
468 KOG4115|consensus 26.5 76 0.0017 20.5 2.5 38 64-102 4-42 (97)
469 PLN02461 Probable pyruvate kin 26.5 3.2E+02 0.007 22.7 6.7 80 21-108 203-291 (511)
470 KOG1706|consensus 26.4 75 0.0016 25.2 2.9 38 7-44 9-52 (412)
471 COG0011 Uncharacterized conser 26.4 1.5E+02 0.0033 19.1 4.0 27 80-107 36-62 (100)
472 PRK14041 oxaloacetate decarbox 26.4 3.6E+02 0.0078 22.1 6.9 86 18-107 101-193 (467)
473 PRK07229 aconitate hydratase; 26.3 1E+02 0.0022 26.3 3.9 73 17-89 280-359 (646)
474 PRK14422 acylphosphatase; Prov 26.3 1.1E+02 0.0024 19.1 3.2 9 60-68 52-60 (93)
475 PF03447 NAD_binding_3: Homose 26.3 60 0.0013 20.5 2.1 46 59-109 66-111 (117)
476 PF01212 Beta_elim_lyase: Beta 26.2 1.2E+02 0.0026 22.9 4.0 48 61-109 107-158 (290)
477 cd01974 Nitrogenase_MoFe_beta 26.2 99 0.0021 24.6 3.7 51 52-105 59-111 (435)
478 PF01408 GFO_IDH_MocA: Oxidore 26.0 1.5E+02 0.0032 18.3 3.9 51 53-109 63-113 (120)
479 smart00729 Elp3 Elongator prot 26.0 2E+02 0.0044 19.0 7.6 42 61-107 134-178 (216)
480 PRK14448 acylphosphatase; Prov 25.9 1.1E+02 0.0025 18.9 3.3 13 60-72 48-60 (90)
481 PLN00094 aconitate hydratase 2 25.9 98 0.0021 27.7 3.8 71 17-89 756-834 (938)
482 PF03135 CagE_TrbE_VirB: CagE, 25.9 63 0.0014 22.7 2.3 48 35-82 130-180 (205)
483 PRK12928 lipoyl synthase; Prov 25.9 1.5E+02 0.0032 22.5 4.4 47 61-107 88-134 (290)
484 TIGR00423 radical SAM domain p 25.8 1.6E+02 0.0034 22.2 4.6 8 48-55 57-64 (309)
485 COG5552 Uncharacterized conser 25.7 83 0.0018 19.5 2.5 16 60-75 15-30 (88)
486 PF05368 NmrA: NmrA-like famil 25.7 2.4E+02 0.0051 19.7 6.8 80 4-89 22-106 (233)
487 PRK14425 acylphosphatase; Prov 25.7 1E+02 0.0022 19.4 3.0 13 60-72 52-64 (94)
488 PRK12859 3-ketoacyl-(acyl-carr 25.6 2.5E+02 0.0054 19.9 8.0 71 16-88 23-107 (256)
489 cd03466 Nitrogenase_NifN_2 Nit 25.6 83 0.0018 25.0 3.2 54 49-105 55-110 (429)
490 PF10120 Aldolase_2: Putative 25.4 85 0.0018 22.0 2.8 61 11-71 88-169 (170)
491 PF00809 Pterin_bind: Pterin b 25.4 85 0.0018 22.4 2.9 43 61-106 17-64 (210)
492 PRK08690 enoyl-(acyl carrier p 25.4 2.6E+02 0.0056 20.0 7.9 70 16-88 23-95 (261)
493 cd00951 KDGDH 5-dehydro-4-deox 25.3 1.4E+02 0.0029 22.4 4.1 48 53-103 101-148 (289)
494 PF02679 ComA: (2R)-phospho-3- 25.2 1E+02 0.0022 23.1 3.3 21 88-108 46-66 (244)
495 PRK14042 pyruvate carboxylase 25.2 2.8E+02 0.0062 23.5 6.3 86 17-107 101-194 (596)
496 PLN02456 citrate synthase 25.2 1.4E+02 0.0031 24.3 4.5 45 48-95 292-341 (455)
497 COG3618 Predicted metal-depend 25.1 1.5E+02 0.0033 22.7 4.3 27 61-87 211-237 (279)
498 TIGR01829 AcAcCoA_reduct aceto 25.1 2.3E+02 0.0051 19.4 7.5 71 16-87 15-88 (242)
499 PF01242 PTPS: 6-pyruvoyl tetr 25.1 1.6E+02 0.0035 18.9 4.0 53 48-102 34-90 (123)
500 cd07943 DRE_TIM_HOA 4-hydroxy- 25.1 2.8E+02 0.0061 20.3 7.8 88 15-107 88-181 (263)
No 1
>PLN02433 uroporphyrinogen decarboxylase
Probab=100.00 E-value=3.4e-33 Score=214.11 Aligned_cols=106 Identities=35% Similarity=0.596 Sum_probs=101.5
Q ss_pred CCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccch
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYI 82 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~I 82 (109)
++|+|+|+||...+++.+.++|++++|+||.+|++++++.+|++ +||||+||.+|+||+|+|+++++++|+.++++|||
T Consensus 232 ~~~~ilh~cG~~~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~I 311 (345)
T PLN02433 232 DVPLILYANGSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHI 311 (345)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeE
Confidence 57999999998899999999999999999999999999999999 99999999877899999999999999997767799
Q ss_pred hccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 83 ANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 83 l~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
||+||+|+|+||+|||+||++++|+|+
T Consensus 312 l~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 312 LNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 2
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=6e-33 Score=213.44 Aligned_cols=107 Identities=40% Similarity=0.755 Sum_probs=102.8
Q ss_pred CCCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc-cc
Q psy15360 3 NDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 3 ~~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
.++|+||||+|+..+++.|.++|+|++|+||.+++++|++.++++ +||||+||.+|++++|+|+++++++|+.+.+ .+
T Consensus 241 ~~~pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~ 320 (352)
T COG0407 241 GGVPVIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSG 320 (352)
T ss_pred CCCcEEEECCCcHHHHHHHHhcCCcEEeeccccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCC
Confidence 348999999999999999999999999999999999999999999 9999999988899999999999999999887 59
Q ss_pred chhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
||||+||||+|+||+||+++||+++|+|+
T Consensus 321 ~IfnlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 321 YIFNLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred ceecCCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999986
No 3
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.98 E-value=1.2e-32 Score=210.90 Aligned_cols=106 Identities=42% Similarity=0.695 Sum_probs=101.3
Q ss_pred CCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccch
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYI 82 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~I 82 (109)
+.|++|||+|+..+++.+.++|++++|+||.+|++++++.+|++ +||||+||.+|+||+|+|+++++++|+.+.++|||
T Consensus 239 ~~~ilh~cg~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfI 318 (346)
T PRK00115 239 DVPVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHI 318 (346)
T ss_pred CCCEEEEcCCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCee
Confidence 57899999999999999999999999999999999999999998 99999999877899999999999999998668899
Q ss_pred hccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 83 ANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 83 l~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
||+||+++|+||+|||+||++++|+|+
T Consensus 319 l~~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 319 FNLGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred eecCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999996
No 4
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.97 E-value=3.2e-31 Score=202.22 Aligned_cols=104 Identities=48% Similarity=0.830 Sum_probs=99.0
Q ss_pred CCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc-ccc
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-SRY 81 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-~g~ 81 (109)
+.|++|||+|+.++++.+.++|++++|+||.+|++++++.++++ +++||+||.+|+||+|+|+++++++|+.++. +||
T Consensus 233 ~~~ilh~cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~ 312 (338)
T TIGR01464 233 NVPVILFAKGAGHLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRY 312 (338)
T ss_pred CCCEEEEeCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCc
Confidence 57899999999999999999999999999999999999999999 9999999987789999999999999999864 889
Q ss_pred hhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 82 IANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 82 Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
|||+||+|+|+||+|||+||++++|+
T Consensus 313 Il~~Gc~i~~~tp~eni~a~v~a~~~ 338 (338)
T TIGR01464 313 IFNLGHGILPDTPPENVKALVEYVHS 338 (338)
T ss_pred eecCCCcCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999985
No 5
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.97 E-value=4e-31 Score=201.28 Aligned_cols=104 Identities=48% Similarity=0.784 Sum_probs=99.5
Q ss_pred CCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc-ccc
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-SRY 81 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-~g~ 81 (109)
++|++|||||+..+++.|.++|++++|+||.+|++++++.+|++ +++||+||.+|++++|+|+++++++|+.+++ +||
T Consensus 230 ~~~ilh~cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gf 309 (335)
T cd00717 230 GVPVILFAKGAGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGH 309 (335)
T ss_pred CCCEEEEcCCCHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCc
Confidence 57899999999999999999999999999999999999999999 9999999987788999999999999999876 899
Q ss_pred hhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 82 IANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 82 Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
|||+||++|++||+|||+||++++|+
T Consensus 310 Il~~gc~i~~~tp~eNi~a~v~a~~~ 335 (335)
T cd00717 310 IFNLGHGILPDTPPENVKALVEAVHS 335 (335)
T ss_pred eeecCCcCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999985
No 6
>KOG2872|consensus
Probab=99.97 E-value=3.1e-30 Score=192.75 Aligned_cols=106 Identities=58% Similarity=0.965 Sum_probs=103.5
Q ss_pred CCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccch
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYI 82 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~I 82 (109)
.+|.|+|.+|+...|+.++++|+|+++.||.+|++|+++.+|++ ++|||+||..|+||+|+|.+.++++++.+++.+||
T Consensus 251 ~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~ryI 330 (359)
T KOG2872|consen 251 PVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKSRYI 330 (359)
T ss_pred CCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhCccceE
Confidence 47999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 83 ANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 83 l~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+|+|||+.|+||+|++..|+|++|+++
T Consensus 331 ~NLGHGi~p~tp~e~v~~f~E~~h~~~ 357 (359)
T KOG2872|consen 331 ANLGHGITPGTPPEHVAHFVEAVHKIG 357 (359)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999875
No 7
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.96 E-value=1e-28 Score=187.80 Aligned_cols=105 Identities=24% Similarity=0.495 Sum_probs=88.1
Q ss_pred CC-cEEEeecchh-hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCc-ccccccHHHHHHHHHHHHHH-hc-
Q psy15360 4 DV-PMTIFAKGAH-YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDP-CALYASKEKLRKIGTQMAKE-FG- 77 (109)
Q Consensus 4 ~~-pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp-~~L~gt~e~i~~~~~~~l~~-~~- 77 (109)
+. |+++|+||.. .+++.+.++|+|++++|+.+|+.++++.++++ +++||+|| .+|.||+|+|+++++++|+. .+
T Consensus 233 g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~ 312 (343)
T PF01208_consen 233 GKDPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAG 312 (343)
T ss_dssp ETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCT
T ss_pred CCCceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCC
Confidence 45 8999999986 79999999999999999999999999999988 99999999 46679999999999999995 55
Q ss_pred cccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 78 KSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 78 ~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++||||++||++|++||+||++||++++|+|
T Consensus 313 ~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 313 GGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp SSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 5999999999999999999999999999998
No 8
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.95 E-value=1.9e-28 Score=190.04 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=96.6
Q ss_pred CCCcEEEeecchhh-hHHHHhccCCc-eEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhc-
Q psy15360 3 NDVPMTIFAKGAHY-ALEELNQTKYD-IVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFG- 77 (109)
Q Consensus 3 ~~~pvi~~~~g~~~-~l~~l~~~g~d-~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~- 77 (109)
.+.|+++|.||.+. +++++.++|.+ +++++|.+|++++|+.+|++ +||||+||.+| .||+|+|+++++++|+.++
T Consensus 267 ~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~ 346 (378)
T cd03308 267 RGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAP 346 (378)
T ss_pred cCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCC
Confidence 36799999999864 89999999997 78888889999999999998 99999999865 5999999999999999987
Q ss_pred cccchhccCCccCCCCC--hHHHHHHHHHhhh
Q psy15360 78 KSRYIANLGHGIYPDMD--PEHVQVLIDAIHD 107 (109)
Q Consensus 78 ~~g~Il~~gcgi~~~tp--~eNi~a~v~a~~~ 107 (109)
++|||||+||+++|+|| +|||+||++++|+
T Consensus 347 ~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~~ 378 (378)
T cd03308 347 GGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred CCCEEEeCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 48999999999999999 9999999999985
No 9
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.95 E-value=2e-28 Score=186.65 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=92.0
Q ss_pred CcEEEeecc-hhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcc-cc-cccHHHHHHHHHHHHHHhcccc
Q psy15360 5 VPMTIFAKG-AHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPC-AL-YASKEKLRKIGTQMAKEFGKSR 80 (109)
Q Consensus 5 ~pvi~~~~g-~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~-~L-~gt~e~i~~~~~~~l~~~~~~g 80 (109)
.+.++|+|| +..+++.+.++|+|++|+|+.+|++++++.+|++ +++||+||. +| .||+|+|+++++++++. ++
T Consensus 234 ~~~ilH~CG~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~ 310 (340)
T TIGR01463 234 GITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GG 310 (340)
T ss_pred CceEEEECCCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CC
Confidence 344555555 5679999999999999999999999999999999 999999996 45 59999999999999986 78
Q ss_pred chhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
||||+||+++++||+|||+||++++|+|.
T Consensus 311 ~Il~~gcgi~~~tp~eni~a~v~a~~~~~ 339 (340)
T TIGR01463 311 DIVMPGCDIDWMTPLENLKAMIEACKSIK 339 (340)
T ss_pred eEECCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999984
No 10
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.95 E-value=2.3e-28 Score=185.67 Aligned_cols=100 Identities=21% Similarity=0.375 Sum_probs=92.4
Q ss_pred CcEEEeecch-hhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcc-c-ccccHHHHHHHHHHHHHHhcccc
Q psy15360 5 VPMTIFAKGA-HYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPC-A-LYASKEKLRKIGTQMAKEFGKSR 80 (109)
Q Consensus 5 ~pvi~~~~g~-~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~-~-L~gt~e~i~~~~~~~l~~~~~~g 80 (109)
.|+++|.||. ..+++.+.++|+|++++||.+|++++++.+|++ ++|||+||. + ++||+|+|+++++++|+. ++
T Consensus 223 ~~~ilh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~ 299 (326)
T cd03307 223 CPTILHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLED---GV 299 (326)
T ss_pred CCcEEEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cC
Confidence 5788886665 579999999999999999999999999999998 999999997 4 479999999999999997 56
Q ss_pred chhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
||||+||+|+|+||+||++||++++|+
T Consensus 300 ~Il~~Gc~i~~~tp~env~a~v~a~~e 326 (326)
T cd03307 300 DILAPGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CEecCcCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999985
No 11
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.95 E-value=3.4e-28 Score=183.77 Aligned_cols=105 Identities=29% Similarity=0.412 Sum_probs=98.4
Q ss_pred CCCcEEEeecchh-hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcc-cc-cccHHHHHHHHHHHHHHhcc
Q psy15360 3 NDVPMTIFAKGAH-YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPC-AL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 3 ~~~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~-~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
.+.|+++|+||.. .+++.+.++|+|++++|+.+|++++++.+|++ +++||+||. +| .||+|+|+++++++|+.+++
T Consensus 220 ~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~ 299 (330)
T cd03465 220 LGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLK 299 (330)
T ss_pred cCCceEEEECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhC
Confidence 3679999999976 79999999999999999999999999999998 999999997 66 59999999999999999865
Q ss_pred --ccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 79 --SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 79 --~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
++||||+||+++++||+|||+||++|+|+
T Consensus 300 ~~~~~il~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 300 GGGGYILSSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred CCCCEEEeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999999999985
No 12
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.95 E-value=3.4e-28 Score=185.20 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=92.1
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCc-cc-ccccHHHHHHHHHHHHHHhccccc
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDP-CA-LYASKEKLRKIGTQMAKEFGKSRY 81 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp-~~-L~gt~e~i~~~~~~~l~~~~~~g~ 81 (109)
.+++|+|+++..+++.+.++|+|++++||.+|+.++++.+|++ ++|||+|| .+ +.||+|+|+++++++|+. +++
T Consensus 233 ~~ilH~cG~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~---g~~ 309 (339)
T PRK06252 233 PTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED---GVD 309 (339)
T ss_pred CcEEEECCCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc---CCC
Confidence 3455555556679999999999999999999999999999998 99999999 44 479999999999999985 679
Q ss_pred hhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 82 IANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 82 Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
|||+|||++|+||+||++||++++|+|+
T Consensus 310 Il~~gcgi~~~tp~enl~a~v~a~~~~~ 337 (339)
T PRK06252 310 ILAPGCGIAPKTPLENIKAMVEARKEYY 337 (339)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 13
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.92 E-value=2.4e-25 Score=166.78 Aligned_cols=104 Identities=30% Similarity=0.444 Sum_probs=96.8
Q ss_pred CCCcEEEeecch-hhhHHHHhccCCceEeeeccc-ChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccc
Q psy15360 3 NDVPMTIFAKGA-HYALEELNQTKYDIVGIDWTI-EPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKS 79 (109)
Q Consensus 3 ~~~pvi~~~~g~-~~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~ 79 (109)
.+.|+++|+||. ..+++.|.++|+|++|+|+.+ |+.++++.+|++ +|+||+||.++.+++|+|+++++++++.+++
T Consensus 198 ~~~~~~lH~cg~~~~~~~~l~~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~- 276 (306)
T cd00465 198 GEVPIVHHSCYDAADLLEEMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP- 276 (306)
T ss_pred cCCceEEEECCCHHHHHHHHHHhCcceEecccccCCHHHHHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC-
Confidence 367899999987 579999999999999999998 999999999998 9999999996689999999999999999875
Q ss_pred cchhccCCccCCCCCh--HHHHHHHHHhhh
Q psy15360 80 RYIANLGHGIYPDMDP--EHVQVLIDAIHD 107 (109)
Q Consensus 80 g~Il~~gcgi~~~tp~--eNi~a~v~a~~~ 107 (109)
+||||+||++++.||. |||+||++++|+
T Consensus 277 ~~il~~~cgi~~~~~~~~enl~a~v~a~~~ 306 (306)
T cd00465 277 HYIINPDCGLGPDSDYKPEHLRAVVQLVDE 306 (306)
T ss_pred CeEEeCCCCCCCCCCCcHHHHHHHHHHhhC
Confidence 8999999999999999 999999999985
No 14
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.89 E-value=4.8e-23 Score=157.26 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=94.4
Q ss_pred CCcEEEeecchh-hhHHHHhccCCceEeeeccc-ChhhHhhhhcCC-ccccCCCcccc-c-ccHHHHHHHHHHHHHHhcc
Q psy15360 4 DVPMTIFAKGAH-YALEELNQTKYDIVGIDWTI-EPSLARSIIKNK-TLQGNLDPCAL-Y-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 4 ~~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~-~l~GNidp~~L-~-gt~e~i~~~~~~~l~~~~~ 78 (109)
+.|+|+|+||.. .+++.|.++|+|++++||.+ |+.++++.+|++ +||||+||.+| . +++|+|+++++++++.+++
T Consensus 212 g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~ 291 (321)
T cd03309 212 SALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAP 291 (321)
T ss_pred CCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 579999999986 79999999999999999997 999999999999 99999999866 4 4589999999999999987
Q ss_pred -ccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 79 -SRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 79 -~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
++|||+++|+++.+.++||++|+-+..
T Consensus 292 ~~~fIf~~~~~~~~~~~~~~~~~~~~~~ 319 (321)
T cd03309 292 IHPFISAPTAGLPFSIFPEVLRRVSAFL 319 (321)
T ss_pred CCCEEeCccCCCCcccCHHHHHHHHHhh
Confidence 999999999999999999999987653
No 15
>PRK04326 methionine synthase; Provisional
Probab=99.59 E-value=3.6e-15 Score=113.60 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeeccc----ChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTI----EPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
+..+++|+| |.. .+++.|.++++|++|+|+.. +++++++..+++ .+.||+|+... .+++|+|.++++++++.
T Consensus 207 ~~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~ 286 (330)
T PRK04326 207 NAKLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY 286 (330)
T ss_pred CCEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 356778887 765 58999999999999999976 778887766667 88999999754 79999999999999996
Q ss_pred hccccchhccCCccCCC---CChHHHHHHHHHhhhh
Q psy15360 76 FGKSRYIANLGHGIYPD---MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~~~---tp~eNi~a~v~a~~~~ 108 (109)
....+++++|+||++.. ++.+|+++|+++++..
T Consensus 287 ~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a~~~ 322 (330)
T PRK04326 287 VPPEKLYINPDCGLKLLPREIAYQKLVNMVKATREV 322 (330)
T ss_pred CChhhEEECCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 54578999999999877 9999999999999764
No 16
>PRK00957 methionine synthase; Provisional
Probab=99.56 E-value=1.8e-14 Score=108.90 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCcEEEeecchh-hhHHHHhccCCceEeeec---ccChhhHhh-hhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHh
Q psy15360 4 DVPMTIFAKGAH-YALEELNQTKYDIVGIDW---TIEPSLARS-IIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEF 76 (109)
Q Consensus 4 ~~pvi~~~~g~~-~~l~~l~~~g~d~~~id~---~~d~~~~~~-~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~ 76 (109)
+.++.+|+||.. .+++.|.++++|++++|+ ..+++.+++ ..+++ .+.|++|+... ..++|+|++.+++.++..
T Consensus 190 ~~~v~lH~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~ 269 (305)
T PRK00957 190 NVPVAMHVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIEIL 269 (305)
T ss_pred CCceEEEECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 356677888875 589999999999999998 556777764 34567 89999999754 799999999999999987
Q ss_pred ccccchhccCCccCCCC---ChHHHHHHHHHhhhhC
Q psy15360 77 GKSRYIANLGHGIYPDM---DPEHVQVLIDAIHDAL 109 (109)
Q Consensus 77 ~~~g~Il~~gcgi~~~t---p~eNi~a~v~a~~~~~ 109 (109)
+..+++++|+||+.+-+ +.+|+++|++++++|.
T Consensus 270 ~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~~ 305 (305)
T PRK00957 270 GAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREIR 305 (305)
T ss_pred CHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 66789999999997666 9999999999999874
No 17
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=99.12 E-value=3.5e-10 Score=86.23 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=81.4
Q ss_pred CCcEEEeec-chh-----------hhHHHHhccCCceEeeeccc----ChhhHhhhhcCC-ccccCCCcccc-cccHHHH
Q psy15360 4 DVPMTIFAK-GAH-----------YALEELNQTKYDIVGIDWTI----EPSLARSIIKNK-TLQGNLDPCAL-YASKEKL 65 (109)
Q Consensus 4 ~~pvi~~~~-g~~-----------~~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i 65 (109)
+.++.+|+| |.. .+++.|.++++|++++|+.. +++.+++...++ ...|++|+... ..++|+|
T Consensus 208 ~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~~k~l~~GvVd~~~~~~e~~e~v 287 (332)
T cd03311 208 DTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPYDKKVGLGVVDVKSPEVESPEEV 287 (332)
T ss_pred CCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCCCCEEEeeeecCCCCCCCCHHHH
Confidence 467778877 654 48899999999999999865 677777765567 88999999754 7999999
Q ss_pred HHHHHHHHHHhccccchhccCCccCCCCC---hHHHHHHHHHh
Q psy15360 66 RKIGTQMAKEFGKSRYIANLGHGIYPDMD---PEHVQVLIDAI 105 (109)
Q Consensus 66 ~~~~~~~l~~~~~~g~Il~~gcgi~~~tp---~eNi~a~v~a~ 105 (109)
++.++++++......++++|+||+...++ .+.+++|++++
T Consensus 288 ~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~ 330 (332)
T cd03311 288 KDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAA 330 (332)
T ss_pred HHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHh
Confidence 99999999987656789999999987555 44556666654
No 18
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=98.18 E-value=1e-05 Score=62.45 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred hhHHHHhccCCceEeeecccCh--hhHhhhhcCC-ccccCCCccc-ccccHHHHHHHHHHHHHHhccccchhccCCccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEP--SLARSIIKNK-TLQGNLDPCA-LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP 91 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~--~~~~~~~g~~-~l~GNidp~~-L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~ 91 (109)
.+++.|.++.+|.+++++..+- .+..+.+.++ ...|=+|+.. -+-++|+|++.+++.++.......++||.||+..
T Consensus 235 ~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~ 314 (339)
T PRK09121 235 EAFPKLQKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAP 314 (339)
T ss_pred HHHHHHHhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCc
Confidence 5788899999999999875332 2445555566 8899999975 4689999999999999987667889999999876
Q ss_pred CCC---hHHHHHHHHHhhhh
Q psy15360 92 DMD---PEHVQVLIDAIHDA 108 (109)
Q Consensus 92 ~tp---~eNi~a~v~a~~~~ 108 (109)
-++ .+.+++|+++++..
T Consensus 315 l~~~~a~~KL~~l~~~a~~~ 334 (339)
T PRK09121 315 LSRDVARGKLNALSAGAEIV 334 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 544 77889999887654
No 19
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=98.06 E-value=2.3e-05 Score=59.73 Aligned_cols=105 Identities=11% Similarity=0.105 Sum_probs=73.7
Q ss_pred CCCcEEEeecchh--hhHHHHhccCCceEeeeccc----ChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHH
Q psy15360 3 NDVPMTIFAKGAH--YALEELNQTKYDIVGIDWTI----EPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAK 74 (109)
Q Consensus 3 ~~~pvi~~~~g~~--~~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~ 74 (109)
.+.++..|+|..+ ..++.+.++++|++++++.. +++-.++.-.++ ...|=+|+..- .-++|+|.+.+++.++
T Consensus 209 ~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~~a~~ 288 (324)
T PF01717_consen 209 EDATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRELPSGKKVVLGVVDTKSPEVESPEEVADRIEEALE 288 (324)
T ss_dssp TTSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEEES-TTSSS--THHHHHHHHHHHHT
T ss_pred CCCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHhCcCCceEEEEEEcCCCCCcCCHHHHHHHHHHHHh
Confidence 4677888888653 36688999999999998654 333444423345 77899988644 5799999999999998
Q ss_pred HhccccchhccCCccCCCCCh---HHHHHHHHHhhh
Q psy15360 75 EFGKSRYIANLGHGIYPDMDP---EHVQVLIDAIHD 107 (109)
Q Consensus 75 ~~~~~g~Il~~gcgi~~~tp~---eNi~a~v~a~~~ 107 (109)
.......+++|.||+..-++. +.++.|++++++
T Consensus 289 ~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 289 YVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp TS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred cCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 866678899999999875543 356778887764
No 20
>PRK01207 methionine synthase; Provisional
Probab=97.90 E-value=9.2e-05 Score=57.53 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=75.1
Q ss_pred cEEEeec-c-h-hhhHHHHhccCCceEeeeccc-----------------ChhhHhhh---h-cCC-ccccCCCccc-cc
Q psy15360 6 PMTIFAK-G-A-HYALEELNQTKYDIVGIDWTI-----------------EPSLARSI---I-KNK-TLQGNLDPCA-LY 59 (109)
Q Consensus 6 pvi~~~~-g-~-~~~l~~l~~~g~d~~~id~~~-----------------d~~~~~~~---~-g~~-~l~GNidp~~-L~ 59 (109)
++..|.| | . ..+++.+.++.+|+++++... +++..++. + .++ .-.|=+|... -.
T Consensus 207 ~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~v 286 (343)
T PRK01207 207 EFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVTDVHIDYV 286 (343)
T ss_pred cEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEEeCCCCCC
Confidence 4555655 6 3 369999999999999998752 22222221 1 123 4577888864 36
Q ss_pred ccHHHHHHHHHHHHHHhc-cccchhccCCccCCC---CChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFG-KSRYIANLGHGIYPD---MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~-~~g~Il~~gcgi~~~---tp~eNi~a~v~a~~~~ 108 (109)
-++|+|++.+++.++..+ +...++||.||+-.- .-.+.+++|+++++.+
T Consensus 287 Es~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~ 339 (343)
T PRK01207 287 EPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNI 339 (343)
T ss_pred CCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999984 578999999998654 3467889999998765
No 21
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=97.87 E-value=8.2e-05 Score=57.12 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=78.3
Q ss_pred CCcEEEeec-chh--hhHHHHhccCCceEeeeccc---ChhhHhhhhcCC-ccccCCCccc-ccccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GAH--YALEELNQTKYDIVGIDWTI---EPSLARSIIKNK-TLQGNLDPCA-LYASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~-g~~--~~l~~l~~~g~d~~~id~~~---d~~~~~~~~g~~-~l~GNidp~~-L~gt~e~i~~~~~~~l~~ 75 (109)
+.++.+|.| |.. ..++.+.++.+|++++|..- ++....+.++++ ...|=+|-.. ..-|+|+|++.+++.++
T Consensus 209 ~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~- 287 (326)
T PRK08575 209 NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGILNARNTKMEKISTIRRIVNKVKR- 287 (326)
T ss_pred CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHh-
Confidence 457777877 652 58999999999999999632 456665556566 7789999864 57899999999999999
Q ss_pred hccccchhccCCccCC---CCChHHHHHHHHH
Q psy15360 76 FGKSRYIANLGHGIYP---DMDPEHVQVLIDA 104 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~~---~tp~eNi~a~v~a 104 (109)
......+++|.||+-. ..=.+.+++|+++
T Consensus 288 ~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~ 319 (326)
T PRK08575 288 KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL 319 (326)
T ss_pred cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH
Confidence 5557889999999855 4446788888877
No 22
>PRK06233 hypothetical protein; Provisional
Probab=97.72 E-value=0.00012 Score=57.13 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=77.0
Q ss_pred CCcE-EEeecchh-----------hhHHHHhccCCceEeeecccC----hhhHhhhhc---CC-ccccCCCccc-ccccH
Q psy15360 4 DVPM-TIFAKGAH-----------YALEELNQTKYDIVGIDWTIE----PSLARSIIK---NK-TLQGNLDPCA-LYASK 62 (109)
Q Consensus 4 ~~pv-i~~~~g~~-----------~~l~~l~~~g~d~~~id~~~d----~~~~~~~~g---~~-~l~GNidp~~-L~gt~ 62 (109)
++.+ +|+|.|.. .+++.|.++++|.+++++..+ ++-.++... ++ ...|=+|... -+-++
T Consensus 236 d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~ 315 (372)
T PRK06233 236 DLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDE 315 (372)
T ss_pred CCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCH
Confidence 3444 46676743 688999999999999997542 222333322 46 8899999974 46899
Q ss_pred HHHHHHHHHHHHHhccccchhccCCccCC---------CCChHHHHHHHHHhhhh
Q psy15360 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYP---------DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 63 e~i~~~~~~~l~~~~~~g~Il~~gcgi~~---------~tp~eNi~a~v~a~~~~ 108 (109)
|+|++.+++.++.......++||.||+.+ ..-.+.++.|++.+++.
T Consensus 316 e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 316 DEIIARIDEATEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred HHHHHHHHHHHHhCCHHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999987667899999999772 33456778888877653
No 23
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=97.46 E-value=0.00076 Score=57.31 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=77.5
Q ss_pred CCcEEEe-ecchh-hhHHHHhccCCceEeeecccC----hhhHhhhhc-CC-ccccCCCcccc-cccHHHHHHHHHHHHH
Q psy15360 4 DVPMTIF-AKGAH-YALEELNQTKYDIVGIDWTIE----PSLARSIIK-NK-TLQGNLDPCAL-YASKEKLRKIGTQMAK 74 (109)
Q Consensus 4 ~~pvi~~-~~g~~-~~l~~l~~~g~d~~~id~~~d----~~~~~~~~g-~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~ 74 (109)
+..+..| |.|.. .+++.|.++.+|++++|..-. ++..++.++ ++ ..-|=+|...- .-++|+|++.+++.++
T Consensus 642 ~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~~ 721 (766)
T PLN02475 642 TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 721 (766)
T ss_pred CCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445445 54764 699999999999999986321 333333233 34 77888888643 6799999999999999
Q ss_pred HhccccchhccCCccCCCCC---hHHHHHHHHHhhhh
Q psy15360 75 EFGKSRYIANLGHGIYPDMD---PEHVQVLIDAIHDA 108 (109)
Q Consensus 75 ~~~~~g~Il~~gcgi~~~tp---~eNi~a~v~a~~~~ 108 (109)
.......++||.||+-.-+- .+.++.|+++++..
T Consensus 722 ~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~ 758 (766)
T PLN02475 722 VLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLL 758 (766)
T ss_pred hCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 88778899999999987544 45678888888754
No 24
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=97.44 E-value=0.00047 Score=53.88 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=68.3
Q ss_pred hhHHHH-hccCCceEeeecccCh----hhHhhhhc--CC-ccccCCCccc-ccccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 16 YALEEL-NQTKYDIVGIDWTIEP----SLARSIIK--NK-TLQGNLDPCA-LYASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 16 ~~l~~l-~~~g~d~~~id~~~d~----~~~~~~~g--~~-~l~GNidp~~-L~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.+++.| .++.+|.+.+++..+- +.. +.+. ++ ...|=+|... -.-++|+|++.+++.++.......++||.
T Consensus 258 ~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L-~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspd 336 (368)
T PRK06520 258 PVAETLFGGVNVDAFFLEYDNERAGGFEPL-RFIPPGHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQ 336 (368)
T ss_pred HHHHHHHhhcCCCeEEEEeccCCCCCcchH-HHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcc
Confidence 578875 5899999999986432 222 2232 35 7899999875 46899999999999999876677999999
Q ss_pred CccCC---------CCChHHHHHHHHHhhh
Q psy15360 87 HGIYP---------DMDPEHVQVLIDAIHD 107 (109)
Q Consensus 87 cgi~~---------~tp~eNi~a~v~a~~~ 107 (109)
||+.. ..-.+.++.|++++++
T Consensus 337 CGf~s~~~~~~l~~~~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 337 CGFASTEEGNSLSEEQQWAKLRLVVEIANE 366 (368)
T ss_pred cCCCccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99773 2334567888888875
No 25
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=97.44 E-value=0.00062 Score=57.72 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=75.5
Q ss_pred CCcE-EEeecch-hhhHHHHhccCCceEeeecccChhhHhhhhc----CC-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 4 DVPM-TIFAKGA-HYALEELNQTKYDIVGIDWTIEPSLARSIIK----NK-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pv-i~~~~g~-~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g----~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
+..+ +|+|.|. .++++.+.++.+|+++++..-+-.+..+.+. ++ ..-|=+|...- .-++|+|.+.+++.++.
T Consensus 637 ~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~ 716 (758)
T PRK05222 637 ETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEV 716 (758)
T ss_pred CCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 3445 4556576 4699999999999999985322112222222 34 67788887643 57999999999999998
Q ss_pred hccccchhccCCccCCCCC---hHHHHHHHHHhhhh
Q psy15360 76 FGKSRYIANLGHGIYPDMD---PEHVQVLIDAIHDA 108 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~~~tp---~eNi~a~v~a~~~~ 108 (109)
......++||.||+-.-+. ...++.|++++++.
T Consensus 717 v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~ 752 (758)
T PRK05222 717 IPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKEL 752 (758)
T ss_pred CChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 7767899999999877444 45668888888754
No 26
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=97.03 E-value=0.0037 Score=53.08 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=71.9
Q ss_pred CcEEEeec-ch-hhhHHHHhccCCceEeeecccChhhHhhhhcC-----C-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 5 VPMTIFAK-GA-HYALEELNQTKYDIVGIDWTIEPSLARSIIKN-----K-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 5 ~pvi~~~~-g~-~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~-----~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
..+..|.| |. ..+++.+.++.+|++++|..-.-.+..+.+.+ + ...|=+|...- .-++|++.+.+++.++.
T Consensus 632 ~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~~ 711 (750)
T TIGR01371 632 TQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQV 711 (750)
T ss_pred CEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHHh
Confidence 44555555 65 46899999999999999954322122222221 2 55666666533 46789999999999987
Q ss_pred hccccchhccCCccCCCCChH---HHHHHHHHhhhh
Q psy15360 76 FGKSRYIANLGHGIYPDMDPE---HVQVLIDAIHDA 108 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~~~tp~e---Ni~a~v~a~~~~ 108 (109)
......++||.||+..-...| .++.|++++++.
T Consensus 712 i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~ 747 (750)
T TIGR01371 712 LPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEA 747 (750)
T ss_pred cCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 755679999999998765555 456777777754
No 27
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=96.80 E-value=0.0054 Score=46.28 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=49.2
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeeecccCh----hhHhhh--h--cCC-ccccCCCcc----cccccHHHHHHHHHH
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEP----SLARSI--I--KNK-TLQGNLDPC----ALYASKEKLRKIGTQ 71 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~----~~~~~~--~--g~~-~l~GNidp~----~L~gt~e~i~~~~~~ 71 (109)
.++.+|+|+. ..++.|.++|+|++|+|..... ...... . +.+ .-.|=+|.. .....+|.+.+ ..+
T Consensus 202 ~~~~lHic~~-~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~~~-~~~ 279 (321)
T cd03310 202 GDVEVHLCAP-LDYEALLELGVDVIGFDAAALPSKYLEDLKKLLRIGVRTLILGLVVTDNEAKGRNAWKEIERLEK-LVR 279 (321)
T ss_pred CceEEEECCC-CCHHHHHhCCCCEEEEecccCcccchhHHHHHHhcCCceEEEEeeecCCcccCCCHHHHHHHHHH-HHH
Confidence 4567777776 6788899999999999987643 222222 1 233 335556652 11111223322 233
Q ss_pred HHHHhc---cccchhccCCccCCC
Q psy15360 72 MAKEFG---KSRYIANLGHGIYPD 92 (109)
Q Consensus 72 ~l~~~~---~~g~Il~~gcgi~~~ 92 (109)
.++..+ +...+++|+||+..-
T Consensus 280 ~l~~~~~~~~~~~~vtpscgL~~~ 303 (321)
T cd03310 280 RLEEPGEVLDEILYLTPDCGLAFL 303 (321)
T ss_pred HhccchhhhhhceeeCCCccCCCC
Confidence 333322 135899999998763
No 28
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=96.79 E-value=0.0063 Score=47.44 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=66.7
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeeccc---ChhhHhhhh-cCC-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTI---EPSLARSII-KNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~---d~~~~~~~~-g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
+.++++|.| |.. ..++.+.++++|++++|+.. +++..++.. .++ ...|=||...- .-+++++.+.++++.+.
T Consensus 231 ~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~ 310 (360)
T cd03312 231 GLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAI 310 (360)
T ss_pred CCcEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHH
Confidence 356777766 654 57899999999999999754 455555533 356 77899999744 68999999999999886
Q ss_pred hccccchhccCCccC
Q psy15360 76 FGKSRYIANLGHGIY 90 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~ 90 (109)
. ....++||.||+.
T Consensus 311 v-~~~l~lsp~CgL~ 324 (360)
T cd03312 311 L-GDRLVVSPSCSLL 324 (360)
T ss_pred h-cCcEEEECCCCCc
Confidence 6 5679999999975
No 29
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=96.72 E-value=0.0094 Score=46.41 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCcEEEeecchhhhH-HHHhccC-CceEeeeccc---ChhhHhhhh---cCC-ccccCCCc--c----------------
Q psy15360 4 DVPMTIFAKGAHYAL-EELNQTK-YDIVGIDWTI---EPSLARSII---KNK-TLQGNLDP--C---------------- 56 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l-~~l~~~g-~d~~~id~~~---d~~~~~~~~---g~~-~l~GNidp--~---------------- 56 (109)
++++-+|. .++ +.+.++. +|++++.+.- +++-..+.. -++ .=.|-+|. .
T Consensus 200 dv~i~lH~----~l~~~~i~~~~~idvi~~E~A~~~~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~ 275 (344)
T PRK06052 200 DVEIHLHS----PLYYELICETPGINVIGVESAATPSYLDLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKYGTNAWK 275 (344)
T ss_pred ceEEEEeh----HhhHHHHhcCCCCCEEeeeccCChHHHHHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhccccccc
Confidence 34555565 666 8888988 9999997543 333333321 134 55777777 2
Q ss_pred ---------cccccHHHHHHHHHHHHHHhccccchhccCCccCCC----CChHHHHHHHHHhhhh
Q psy15360 57 ---------ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD----MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 57 ---------~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~----tp~eNi~a~v~a~~~~ 108 (109)
--.-|+|+|.+..++.++.+.+....+||.||+-.- ...+.++.|+++++.+
T Consensus 276 ~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~~A~~KL~nmv~aa~~~ 340 (344)
T PRK06052 276 DKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQELAFRLLENVAKAINEF 340 (344)
T ss_pred chhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 124689999999999999988888999999999722 2256788888888765
No 30
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=95.76 E-value=0.037 Score=47.27 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCcEEEeec-ch-h-hhHHHHhccC-CceEeeeccc---ChhhHhhh-hc-CC-ccccCCCcccc-cccHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GA-H-YALEELNQTK-YDIVGIDWTI---EPSLARSI-IK-NK-TLQGNLDPCAL-YASKEKLRKIGTQM 72 (109)
Q Consensus 4 ~~pvi~~~~-g~-~-~~l~~l~~~g-~d~~~id~~~---d~~~~~~~-~g-~~-~l~GNidp~~L-~gt~e~i~~~~~~~ 72 (109)
++++++|.| |. . ..++.+.+++ +|++++|..- +++..++. ++ ++ ...|=||-... .-+.+++.+.++++
T Consensus 235 ~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~ 314 (766)
T PLN02475 235 GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQAL 314 (766)
T ss_pred CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHH
Confidence 467888988 76 4 3799999999 9999999643 45555332 44 45 67899998754 67899999999999
Q ss_pred HHHhccccchhccCCccC
Q psy15360 73 AKEFGKSRYIANLGHGIY 90 (109)
Q Consensus 73 l~~~~~~g~Il~~gcgi~ 90 (109)
++..++...+++|+|++.
T Consensus 315 ~~~~~~~~l~v~psCsLl 332 (766)
T PLN02475 315 EGIVGKDKLVVSTSCSLL 332 (766)
T ss_pred HHhcCCCcEEEeCCCCCc
Confidence 987655679999999975
No 31
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=95.64 E-value=0.045 Score=46.65 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeeccc---ChhhHhhhhc-CC-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTI---EPSLARSIIK-NK-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~---d~~~~~~~~g-~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
+.++++|.| |.. ..++.+.++++|++++|..- +++.....++ ++ ...|=||-... .-+++++.+.++++++.
T Consensus 227 ~~ki~l~tyFg~~~~~~~~l~~lpvd~l~lD~v~~~~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~ 306 (750)
T TIGR01371 227 GLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHGKGTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAH 306 (750)
T ss_pred CceEEEECCCCchHHHHHHHHcCCCCEEEEEeccCcccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhh
Confidence 356677877 764 58999999999999999643 4554443344 45 67899998754 68999999999999984
Q ss_pred hccccchhccCCccC
Q psy15360 76 FGKSRYIANLGHGIY 90 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~ 90 (109)
. ...+++|.|++.
T Consensus 307 -~-~~l~v~psCsLl 319 (750)
T TIGR01371 307 -V-GKLVVSTSCSLL 319 (750)
T ss_pred -C-CCEEEeCCCCcc
Confidence 3 349999999975
No 32
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=95.57 E-value=0.065 Score=41.54 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCcEEEeecch--hhhHHHHhccCCceEeeeccc---C-hhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAKGA--HYALEELNQTKYDIVGIDWTI---E-PSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~g~--~~~l~~l~~~g~d~~~id~~~---d-~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~ 75 (109)
++-+-.|.|.+ ..+++.+.+..+|+++++..- + +....+...++ .-.|=+|-..- .-++++|.+..++.++.
T Consensus 212 d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~ 291 (330)
T COG0620 212 DTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEEVKYDKEIGLGVVDIHSPKVESVEEIAARIRKALER 291 (330)
T ss_pred CcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHhccCCCeeecceEecCCCCcCCHHHHHHHHHHHHHh
Confidence 34455565544 347788888899999997543 3 22233322344 55677776543 46889999999999998
Q ss_pred hccccchhccCCccCC---CCChHHHHHHHHHhhhh
Q psy15360 76 FGKSRYIANLGHGIYP---DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 76 ~~~~g~Il~~gcgi~~---~tp~eNi~a~v~a~~~~ 108 (109)
.......+||.||+-. ..-.+.++.|+++++..
T Consensus 292 ~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~ 327 (330)
T COG0620 292 VPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEI 327 (330)
T ss_pred CChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 8777899999999854 34455667788877653
No 33
>KOG2263|consensus
Probab=94.99 E-value=0.14 Score=42.06 Aligned_cols=99 Identities=9% Similarity=0.137 Sum_probs=68.2
Q ss_pred Eeecch-hhhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc------cccHHHHHHHHHHHHHHhcccc
Q psy15360 9 IFAKGA-HYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL------YASKEKLRKIGTQMAKEFGKSR 80 (109)
Q Consensus 9 ~~~~g~-~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L------~gt~e~i~~~~~~~l~~~~~~g 80 (109)
|||-.. +.++..+.++.+|++++.+.-+=++....+... ----.|-|.+. .-+.+++.+++..++.......
T Consensus 648 H~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~ 727 (765)
T KOG2263|consen 648 HMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLAVLPQNI 727 (765)
T ss_pred hhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHHHHhccccc
Confidence 444433 579999999999999998654444444444433 23334555432 2466999999999998877678
Q ss_pred chhccCCccCC----CCChHHHHHHHHHhhhh
Q psy15360 81 YIANLGHGIYP----DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 81 ~Il~~gcgi~~----~tp~eNi~a~v~a~~~~ 108 (109)
+.+||.||+-. .|. -.++.||+|++.+
T Consensus 728 lWvNPDCGLKTR~~~E~~-~~L~~Mv~AAk~~ 758 (765)
T KOG2263|consen 728 LWVNPDCGLKTRGYTEVK-PALKNMVAAAKLI 758 (765)
T ss_pred EEECCCcCcccCCCcccc-HHHHHHHHHHHHH
Confidence 89999999964 222 3578888888754
No 34
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=94.87 E-value=0.13 Score=43.90 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=63.6
Q ss_pred CcEEEeec-ch-hhhHHHHhccCCceEeeeccc---ChhhHhhhhc-CC-ccccCCCcccc-cccHHHHHHHHHHHHHHh
Q psy15360 5 VPMTIFAK-GA-HYALEELNQTKYDIVGIDWTI---EPSLARSIIK-NK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEF 76 (109)
Q Consensus 5 ~pvi~~~~-g~-~~~l~~l~~~g~d~~~id~~~---d~~~~~~~~g-~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~ 76 (109)
.+++++.| |. ..+++.+.++++|++++|+.. +++..++.++ ++ ...|=||.... .-+++++.+.++++.+..
T Consensus 234 ~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v 313 (758)
T PRK05222 234 PKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV 313 (758)
T ss_pred CCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh
Confidence 46666666 54 357898999999999998743 4555544343 45 77899999744 678999999999998865
Q ss_pred ccccchhccCCccC
Q psy15360 77 GKSRYIANLGHGIY 90 (109)
Q Consensus 77 ~~~g~Il~~gcgi~ 90 (109)
...++||.||+.
T Consensus 314 --e~L~lspsCgL~ 325 (758)
T PRK05222 314 --DRLWVAPSCSLL 325 (758)
T ss_pred --ccEEEeCCCCCc
Confidence 568999999985
No 35
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.09 E-value=1.2 Score=34.72 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
.|.+++.+.+++.++.++..|+-+..+|.-...++++-+..+++++.+++
T Consensus 106 ~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 106 KDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG 155 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC
Confidence 46777777777777776655555677777777888888888888877653
No 36
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=92.09 E-value=2.8 Score=32.38 Aligned_cols=98 Identities=22% Similarity=0.363 Sum_probs=66.0
Q ss_pred CCCcEEEeec---------chh--hhHHHHhccCCceEeeecccChhhHhhhh------cCC--ccccCCC-cc-----c
Q psy15360 3 NDVPMTIFAK---------GAH--YALEELNQTKYDIVGIDWTIEPSLARSII------KNK--TLQGNLD-PC-----A 57 (109)
Q Consensus 3 ~~~pvi~~~~---------g~~--~~l~~l~~~g~d~~~id~~~d~~~~~~~~------g~~--~l~GNid-p~-----~ 57 (109)
...|++++.. |+. .++..+..+|++++++...+-+.+.+..+ .+. +...|-- |. +
T Consensus 187 ~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~ 266 (311)
T COG0646 187 VRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERA 266 (311)
T ss_pred CcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCcc
Confidence 4578887743 332 48888999999999998766554444333 112 3455543 21 1
Q ss_pred cc-ccHHHHHHHHHHHHHHhccc-cchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 58 LY-ASKEKLRKIGTQMAKEFGKS-RYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 58 L~-gt~e~i~~~~~~~l~~~~~~-g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
.+ .+|++..+.+++..+. + --|++--| +|.||+|+||.++++.
T Consensus 267 ~Y~~~p~~~a~~~~~f~~~---g~vnIvGGCC----GTTPeHIraia~~v~~ 311 (311)
T COG0646 267 VYDLTPEYMAEALAEFAEE---GGVNIVGGCC----GTTPEHIRAIAEAVKG 311 (311)
T ss_pred ccCCCHHHHHHHHHHHHHh---CCceeecccc----CCCHHHHHHHHHHhcC
Confidence 23 5799999999888877 4 34676666 4778999999999863
No 37
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.77 E-value=2.6 Score=31.13 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.++..+.++++++.++..|+-+..+|.-...++++-+..+++.+.++
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 103 KDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA 151 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC
Confidence 5677777777777777766455566677666677788888877776654
No 38
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.63 E-value=2.3 Score=31.77 Aligned_cols=47 Identities=6% Similarity=-0.047 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+.++..+.++++++.++..|+-+..+-.-...+|++.+..+++.+.+
T Consensus 106 ~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 106 SITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHH
Confidence 44555555555555444333333333333334555555555555444
No 39
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.26 E-value=2.7 Score=31.15 Aligned_cols=49 Identities=8% Similarity=0.063 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.++..+.++++++.++..|+-+..+|.-.+.+++|-+..+++.+.++
T Consensus 107 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
T cd07940 107 KTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEA 155 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHc
Confidence 3555555666666666554445455565555566777777766666544
No 40
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.50 E-value=3.5 Score=32.32 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
..|.+++.+.+++.++.++..|+-+..+|.-...++++-+..+++++.++
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 35777878888888877765555556666666678888888888887664
No 41
>KOG4828|consensus
Probab=89.30 E-value=0.63 Score=31.01 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=57.9
Q ss_pred CCCcE-EEeecchhhhHHHHhccCC--ceEeeecccChhhHhhhhcCCccccCCCcccccc--cHHHHHHHHHHHHHHhc
Q psy15360 3 NDVPM-TIFAKGAHYALEELNQTKY--DIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYA--SKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 3 ~~~pv-i~~~~g~~~~l~~l~~~g~--d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~g--t~e~i~~~~~~~l~~~~ 77 (109)
+|.|. |.|+|=..++|=-+.+.|. .++++....-..+ ..+ =-+...+++| +..+++..++.+++...
T Consensus 20 ~GvpTeIV~~~f~~hil~ViTQ~Gkmgti~~~~~~~~~s~----v~~----P~f~vsV~~g~~Dep~~~~~a~~LV~~~s 91 (125)
T KOG4828|consen 20 NGVPTEIVFHCFAKHILLVITQLGKMGTIYNVHFDVKKSE----VDN----PEFHVSVPIGMLDEPETRSAAQFLVNRTS 91 (125)
T ss_pred cCCcceEEEEEecceEEEEEEeccccceeEEeeecccccc----ccC----CeEEEEEeecccCCHHHHHHHHHHHHHhh
Confidence 35666 6666666665544555664 2344433221111 110 0011123444 56778888999888764
Q ss_pred ----cccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 78 ----KSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 78 ----~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+..+++++| ..+.+-||++|+.+.+++
T Consensus 92 ~~~~~~~~vl~lg---lKd~s~e~Lkal~~v~~e 122 (125)
T KOG4828|consen 92 LHKCPTEFVLGLG---LKDISGENLKALAKVLEE 122 (125)
T ss_pred cccCCcceEEEEe---eccCcchhHHHHHHHHHH
Confidence 367999999 899999999999998765
No 42
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.55 E-value=3.4 Score=29.92 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=39.4
Q ss_pred hhhHHHHhccCCceEeeec--ccChhhHhhhhcCC--ccc-cCCCcc--------cc-c-ccHHHHHHHHHHHHHHhcc
Q psy15360 15 HYALEELNQTKYDIVGIDW--TIEPSLARSIIKNK--TLQ-GNLDPC--------AL-Y-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 15 ~~~l~~l~~~g~d~~~id~--~~d~~~~~~~~g~~--~l~-GNidp~--------~L-~-gt~e~i~~~~~~~l~~~~~ 78 (109)
...++.++++|++.+.+.. ..+..+.++.+.+. .+. -+.++. .. . ...++..+..+++++.+..
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARA 95 (254)
T ss_pred HHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHH
Confidence 4588999999999998743 55677777777554 222 222221 11 1 2334556777788887764
No 43
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=88.22 E-value=6.4 Score=29.53 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=65.3
Q ss_pred hHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccCC--
Q psy15360 17 ALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYP-- 91 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~-- 91 (109)
.-..+.+.|..++-...+.| +++++..+++ |.+.|..+ .-+.+++++.+..+.+.+++ --.+-|.|..+..
T Consensus 22 ~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~ 97 (246)
T COG4221 22 TARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPL 97 (246)
T ss_pred HHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCCCCcCChh
Confidence 66778899999999999888 7888888875 67777766 67889999999999999886 6666677766542
Q ss_pred -CCChHHHHHHHHH
Q psy15360 92 -DMDPEHVQVLIDA 104 (109)
Q Consensus 92 -~tp~eNi~a~v~a 104 (109)
...+|..+.|++.
T Consensus 98 ~~~~~~dw~~Mid~ 111 (246)
T COG4221 98 DEADLDDWDRMIDT 111 (246)
T ss_pred hhCCHHHHHHHHHH
Confidence 4666666666653
No 44
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.76 E-value=6.3 Score=30.77 Aligned_cols=47 Identities=6% Similarity=0.081 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+.+++.+.+.+.++.++..|+-+..+..-...++++-+..+++.+.+
T Consensus 106 ~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 106 SRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHh
Confidence 55555566666666555433333333333345566666666665544
No 45
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.68 E-value=2.1 Score=27.93 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=42.4
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.++..+.+.|.+++-++.+-+--+-.+.+..- -+-+.+|-.+++-.++.+.+.++++.+. +-+..+|.+|
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~-g~~~v~~~~g 88 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL-GVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-T-SEEEE-TT
T ss_pred HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-CCCEEEEEcc
Confidence 47888888998998887654222222233221 1347788777777888999999998876 3366777777
No 46
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=86.46 E-value=0.43 Score=36.17 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHH
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQ 99 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~ 99 (109)
.+.||||+|.+++++..+..+-..+++....+.+.+...++++
T Consensus 271 ~~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 313 (315)
T cd01096 271 NAVGTPEECIEIIQLAIEATGIKNILLSFESMGSEDEIIASIN 313 (315)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeccCCCCHHHHHHHHh
Confidence 3579999999999888887665677777775554444444443
No 47
>PRK10508 hypothetical protein; Provisional
Probab=85.97 E-value=0.81 Score=35.36 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=38.4
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+.||||+|.++.+++.+.++-..+++.+.. .+.+.-.++++.|-++.++
T Consensus 284 ivGtpe~V~~kl~~l~~~~g~del~~~~~~-~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 284 LVGDKAKVRHGLQSILRETQADEIMVNGQI-FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EEeCHHHHHHHHHHHHHHHCcCEEEEECCC-CCHHHHHHHHHHHHHHhhh
Confidence 579999999999999999875666665554 6667777888877777665
No 48
>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []. It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.
Probab=85.51 E-value=1.5 Score=27.86 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=33.8
Q ss_pred cccc-cHHHHHHHHHHHHHHh---c-cccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 57 ALYA-SKEKLRKIGTQMAKEF---G-KSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 57 ~L~g-t~e~i~~~~~~~l~~~---~-~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+|+| +.+.+...+|.+++.. + +..++++.| ..+.+.|.++++.+.+++
T Consensus 35 vllG~dep~l~v~Ar~L~~~i~~~~~~r~lllalg---Lkd~s~e~lk~i~~~i~~ 87 (90)
T PF10178_consen 35 VLLGKDEPLLHVYARQLIEFISQEGSNRPLLLALG---LKDHSPETLKAIVEVIRE 87 (90)
T ss_dssp EEES---HHHHHHHHHHHHHHHHHTTT-EEEEEEE----SS--HHHHHHHHHHHHH
T ss_pred EEecCCcHHHHHHHHHHHHHHhccCCCCcEEEEEe---ccCCCHHHHHHHHHHHHH
Confidence 4665 4466888888888876 2 267888888 889999999999998875
No 49
>PRK09389 (R)-citramalate synthase; Provisional
Probab=84.72 E-value=9.6 Score=31.08 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
..|++++.+.+.+.++.++..|+-+..+..-...++++-+..+++++.+.
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 106 KKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 36788888888888877665444333344445678888888888887664
No 50
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=84.04 E-value=8.3 Score=30.19 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHHhcc-ccch---h--ccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGK-SRYI---A--NLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~-~g~I---l--~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.+++.+.++++++.++. |..+ + ..||.....++++.+..+++.+.+.
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM 209 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc
Confidence 6889999988999988765 3333 2 4677777778999999998887664
No 51
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=83.80 E-value=8.4 Score=28.08 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred hhHHHHhccCCceEeeec--------c---cChhhHhhhhcCC--cccc-----CCCcccc-cccHHHH---HHHHHHHH
Q psy15360 16 YALEELNQTKYDIVGIDW--------T---IEPSLARSIIKNK--TLQG-----NLDPCAL-YASKEKL---RKIGTQMA 73 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~--------~---~d~~~~~~~~g~~--~l~G-----Nidp~~L-~gt~e~i---~~~~~~~l 73 (109)
+.++.++++|++.+.+.. . -+++++++.+.+. .+.+ |.-|..+ .++++.. .+..++.+
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 96 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHH
Confidence 588889999999987621 1 1356666666543 2222 1222222 3444332 33455566
Q ss_pred HHhcc---ccchhccCCccCCCCChHHHHHHHHHhh
Q psy15360 74 KEFGK---SRYIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 74 ~~~~~---~g~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
+.+.. ...++.+|+.-...++.++.+.+++..+
T Consensus 97 ~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (275)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLS 132 (275)
T ss_pred HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHH
Confidence 66543 3345666654334566666555555443
No 52
>PRK09989 hypothetical protein; Provisional
Probab=81.98 E-value=10 Score=27.56 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=38.3
Q ss_pred hhHHHHhccCCceEee--ecccChhhHhhhhcCC--cccc-C-----CCcc--cc---cccHHHHHHHHHHHHHHhcc
Q psy15360 16 YALEELNQTKYDIVGI--DWTIEPSLARSIIKNK--TLQG-N-----LDPC--AL---YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~i--d~~~d~~~~~~~~g~~--~l~G-N-----idp~--~L---~gt~e~i~~~~~~~l~~~~~ 78 (109)
..++.+++.|++.+.+ .+..+.+++++.+.+. .+.+ + +++. .+ -...++..+..+++++.+..
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~ 96 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALA 96 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHH
Confidence 5788899999999976 2345677777777554 2221 1 2211 11 12345666777888877654
No 53
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.84 E-value=14 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=7.8
Q ss_pred HHHHhccCCceEeee
Q psy15360 18 LEELNQTKYDIVGID 32 (109)
Q Consensus 18 l~~l~~~g~d~~~id 32 (109)
++.+.++|++.+.+-
T Consensus 73 ~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHTTSSEEEEE
T ss_pred HHhhHhccCCEEEec
Confidence 333445666666553
No 54
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=81.24 E-value=3.1 Score=34.08 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=48.3
Q ss_pred hhHHHHhccCCceEeeeccc--------ChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc-------c
Q psy15360 16 YALEELNQTKYDIVGIDWTI--------EPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-------S 79 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--------d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-------~ 79 (109)
+..+.|.++|+|++.+|-.- .+++.|+.+++. .+.||+. |+|+. +.+++..-. +
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~------t~e~a----~~a~~aGaD~i~vg~g~ 320 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV------TMYQA----QNLIQAGVDGLRVGMGS 320 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC------CHHHH----HHHHHcCcCEEEECCCC
Confidence 58888999999999998431 367788888766 6678885 44443 444443111 2
Q ss_pred cchhcc----CCccCCCCChHHHHHHHH
Q psy15360 80 RYIANL----GHGIYPDMDPEHVQVLID 103 (109)
Q Consensus 80 g~Il~~----gcgi~~~tp~eNi~a~v~ 103 (109)
|.+..+ |++.|+.+...++..+.+
T Consensus 321 G~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 321 GSICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred CccccCccccccCCCcccHHHHHHHHHH
Confidence 333333 345566666666665554
No 55
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.34 E-value=6.4 Score=27.15 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=45.8
Q ss_pred chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc---cccHHHHHHHHHHHHHHhccccchh-ccCCc
Q psy15360 13 GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL---YASKEKLRKIGTQMAKEFGKSRYIA-NLGHG 88 (109)
Q Consensus 13 g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L---~gt~e~i~~~~~~~l~~~~~~g~Il-~~gcg 88 (109)
|..-+-..+.+.|++++.........|+.+. .++...|...+ .|.-.+.-..+.+.+...+ .+.|+ -.|--
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~tp~e~v~a----A~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G-~~~i~v~~GGv 102 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQTPEEAVRA----AVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG-VEDILVVVGGV 102 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCCHHHHHHH----HHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC-CcceEEeecCc
Confidence 3333455677999999988877777777643 47788888643 4655565555555555544 34444 33433
Q ss_pred cCC
Q psy15360 89 IYP 91 (109)
Q Consensus 89 i~~ 91 (109)
||+
T Consensus 103 ip~ 105 (143)
T COG2185 103 IPP 105 (143)
T ss_pred cCc
Confidence 443
No 56
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.99 E-value=10 Score=28.77 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCCcEEEeecc-------hhhhHHHHhccCCceEee-ecccChhhHhhhhcCCccccCCCccccc--ccHHHHHHHHHH
Q psy15360 2 NNDVPMTIFAKG-------AHYALEELNQTKYDIVGI-DWTIEPSLARSIIKNKTLQGNLDPCALY--ASKEKLRKIGTQ 71 (109)
Q Consensus 2 ~~~~pvi~~~~g-------~~~~l~~l~~~g~d~~~i-d~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~e~i~~~~~~ 71 (109)
+.++|++++..- -..++...+++|+|.+-+ | +.++++.+... -+-.=+|||..|. .|+++- .++
T Consensus 92 ~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD--LP~ee~~~~~~-~~~~~gi~~I~lvaPtt~~~r---l~~ 165 (265)
T COG0159 92 GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD--LPPEESDELLK-AAEKHGIDPIFLVAPTTPDER---LKK 165 (265)
T ss_pred CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCC--CChHHHHHHHH-HHHHcCCcEEEEeCCCCCHHH---HHH
Confidence 357888877553 335788899999998744 4 23333322211 0223378887553 344332 233
Q ss_pred HHHHhccccchhccCC-ccCC-CCC-hHHHHHHHHHhhhhC
Q psy15360 72 MAKEFGKSRYIANLGH-GIYP-DMD-PEHVQVLIDAIHDAL 109 (109)
Q Consensus 72 ~l~~~~~~g~Il~~gc-gi~~-~tp-~eNi~a~v~a~~~~~ 109 (109)
+.+.. .|||.-.+. |+.- ..+ .+-+.++++.+|+|.
T Consensus 166 i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 166 IAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred HHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhc
Confidence 33331 467666555 3322 222 122788888888763
No 57
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=78.81 E-value=1.5 Score=33.64 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=31.6
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhccCCc-cCCCCChHHHHHHHH
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANLGHG-IYPDMDPEHVQVLID 103 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg-i~~~tp~eNi~a~v~ 103 (109)
.+.||||+|.++.+++.+..+-..++|.+-++ .+.+.-.+.++.|-+
T Consensus 283 ~lvGtPe~V~e~i~~~~~~~G~d~~~l~~~~~~~~~~~~~~~i~~fa~ 330 (337)
T TIGR03858 283 LYVGSPETVAEKIADTIETLGLDRFMLHYSVGSLPHEQVMRAIELYGT 330 (337)
T ss_pred eeeeCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46799999999999998876556777776443 333333455555543
No 58
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=78.75 E-value=19 Score=27.03 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHhccccchh------ccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIA------NLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il------~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.+++.+.+.+.++..+..|+.+ +.||....-++++-+..+++.+.++
T Consensus 108 s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~ 161 (274)
T cd07938 108 SIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDL 161 (274)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHc
Confidence 45555555565555554422222 4555444445666666666655443
No 59
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.20 E-value=5.1 Score=30.64 Aligned_cols=48 Identities=4% Similarity=-0.003 Sum_probs=30.9
Q ss_pred cCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 51 GNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 51 GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
-+.|-.+| ..+||++++.++ .++...+.--+..+| +..++|+.++.++
T Consensus 218 ~gaDiI~LDnm~~e~vk~av~-~~~~~~~~v~ieaSG-----GI~~~ni~~yA~t 266 (289)
T PRK07896 218 EGAELVLLDNFPVWQTQEAVQ-RRDARAPTVLLESSG-----GLTLDTAAAYAET 266 (289)
T ss_pred cCCCEEEeCCCCHHHHHHHHH-HHhccCCCEEEEEEC-----CCCHHHHHHHHhc
Confidence 35555556 677888888877 333323344566666 6778888887765
No 60
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=77.79 E-value=3.1 Score=32.25 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=33.5
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
.|.||||+|.+++++..+..+-.+|+|.. ..-.++++.|.+.|
T Consensus 303 ~lvGtPe~Vae~l~~~~~~~G~d~f~l~~------~~~~~~~~~f~~~V 345 (355)
T TIGR03612 303 TLVGSYETVARMLDEVAEVPGTGGVLLTF------DDFLEGVEDFGTRI 345 (355)
T ss_pred cEEECHHHHHHHHHHHHhccCCCeeEEcC------CCCcchHHHHHHhc
Confidence 47899999999999999875556888884 23358888887764
No 61
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=77.07 E-value=5 Score=30.40 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCcEEEee-cch-hhhHHHHhccCCceEeeecc--cChhhHhh-hhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFA-KGA-HYALEELNQTKYDIVGIDWT--IEPSLARS-IIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~-~g~-~~~l~~l~~~g~d~~~id~~--~d~~~~~~-~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|+..|. +|. ...+..+.++|++.+.+... .++.++.+ .+.... .+||.-+ ....+.+++.+++.|+.++
T Consensus 200 ~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~g 276 (281)
T PRK06806 200 HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLVLNTP---YSDYFTYHQDVIKAAYENVKKHMQIFG 276 (281)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58998885 354 35788889999999988642 34544433 332213 3777644 4556889999999998875
No 62
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=76.85 E-value=18 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCC-CChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD-MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~-tp~eNi~a~v~a~~~~ 108 (109)
+|+.|.++.+ ...+-+.=+|+|=+..|+ =.++.|++|+++++++
T Consensus 164 ~p~NV~~ai~----~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~~vk~~ 208 (208)
T COG0135 164 NPDNVAEAIA----LGPPYGVDVSSGVESSPGIKDPAKVKAFFEAVKRA 208 (208)
T ss_pred CHHHHHHHHH----hcCCceEEeccccccCCCCCCHHHHHHHHHHHhcC
Confidence 4466665544 333344558888888875 6788899999999874
No 63
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.65 E-value=5.3 Score=30.48 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeeccc--ChhhHhhhhcCC--cc------ccCCCcccc-cccHHHHHHHHH
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTI--EPSLARSIIKNK--TL------QGNLDPCAL-YASKEKLRKIGT 70 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~--d~~~~~~~~g~~--~l------~GNidp~~L-~gt~e~i~~~~~ 70 (109)
++|+..|.+ |.. +-+....++|++-+.++..+ ++.++.+.+-.. .. ...+||.-+ ....+.+++.++
T Consensus 202 ~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 281 (293)
T PRK07315 202 GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDYEANEAEYDKKKLFDPRKFLAPGVKAIQASVE 281 (293)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHHhcccccccccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 589988855 544 57888889999999886432 443333322111 11 224788754 456688999999
Q ss_pred HHHHHhc
Q psy15360 71 QMAKEFG 77 (109)
Q Consensus 71 ~~l~~~~ 77 (109)
+.++.++
T Consensus 282 ~~i~~~g 288 (293)
T PRK07315 282 ERIDVFG 288 (293)
T ss_pred HHHHHhC
Confidence 9998865
No 64
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.06 E-value=17 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=31.5
Q ss_pred hhHHHHhc--cCCceEeeecc-------cC-hhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQ--TKYDIVGIDWT-------IE-PSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~--~g~d~~~id~~-------~d-~~~~~~~~g~~-~l~GNidp 55 (109)
.+++.|.+ .|+|++.+|-. ++ +++.|+.+++. .+.||+-+
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T 161 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVT 161 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccC
Confidence 47788887 49999999843 23 68889999988 89999865
No 65
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.91 E-value=4.9 Score=30.08 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
.++++.+.++++++++. |-.|+-.|.+.++...++.+..+++++++
T Consensus 21 ~~d~~~i~~~A~~~~~~---GAdiIDVg~~~~~~eE~~r~~~~v~~l~~ 66 (261)
T PRK07535 21 AKDAAFIQKLALKQAEA---GADYLDVNAGTAVEEEPETMEWLVETVQE 66 (261)
T ss_pred cCCHHHHHHHHHHHHHC---CCCEEEECCCCCchhHHHHHHHHHHHHHH
Confidence 47889999999999887 88999999998776667778888877754
No 66
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=75.77 E-value=18 Score=27.31 Aligned_cols=49 Identities=16% Similarity=-0.042 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHHHHhccccc--hhccCCc-cCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRY--IANLGHG-IYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~--Il~~gcg-i~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.+++.+.++++++.++..|+ .++..+- -|..++++.+..+++++.++
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL 159 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc
Confidence 5788888888888887764332 2222220 01267888888888877654
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=75.63 E-value=25 Score=26.63 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHhcc-ccch-----hccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGK-SRYI-----ANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~-~g~I-----l~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.+++.+.+++.++.++. |..+ .+.||.....++++.+..+++.+.+.
T Consensus 113 ~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 113 CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL 167 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc
Confidence 4666766677777776654 3222 13455444457777887777776654
No 68
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=74.99 E-value=2.2 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.7
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhcc
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANL 85 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~ 85 (109)
++.||||+|.++++++.+.++-..+++.+
T Consensus 277 ~iiGspe~v~~~l~~~~~~~G~d~~~~~~ 305 (323)
T TIGR03558 277 SIVGSPETVREQLEALAERTGADELMVTT 305 (323)
T ss_pred eEEcCHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 35799999999999999886645566654
No 69
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=74.92 E-value=6.4 Score=29.80 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=47.7
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh--h-HhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS--L-ARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~--~-~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|+..|.+ |.. .-+..+.+.|++.+.++-.+... + .++.+.+. -+++||.-+ ....+.+++.+++.|+.++
T Consensus 200 ~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~g 277 (282)
T TIGR01859 200 NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEK--KDEYDPRKILGPAREAIKETVKEKMRLFG 277 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589988853 544 46777888999999987533221 1 23333211 134788655 3566889999999999876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 278 s 278 (282)
T TIGR01859 278 S 278 (282)
T ss_pred C
Confidence 3
No 70
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=74.42 E-value=6.7 Score=27.52 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=36.7
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+++++.+.+ .-++|-.+| ..+|+++++.++++ +...+.--|..+| +..++|+.++.++.
T Consensus 89 ~~ee~~ea~-----~~g~d~I~lD~~~~~~~~~~v~~l-~~~~~~v~ie~SG-----GI~~~ni~~ya~~g 148 (169)
T PF01729_consen 89 NLEEAEEAL-----EAGADIIMLDNMSPEDLKEAVEEL-RELNPRVKIEASG-----GITLENIAEYAKTG 148 (169)
T ss_dssp SHHHHHHHH-----HTT-SEEEEES-CHHHHHHHHHHH-HHHTTTSEEEEES-----SSSTTTHHHHHHTT
T ss_pred CHHHHHHHH-----HhCCCEEEecCcCHHHHHHHHHHH-hhcCCcEEEEEEC-----CCCHHHHHHHHhcC
Confidence 456665544 345676667 67899999888877 3333344555666 66778888776654
No 71
>PRK12743 oxidoreductase; Provisional
Probab=74.36 E-value=29 Score=24.77 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=48.9
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|..++.+... +...+.+....- ...+++..... +.+++.+++.+.++.+.+++ ...|.+.|-...
T Consensus 17 ~~a~~l~~~G~~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 95 (256)
T PRK12743 17 ACALLLAQQGFDIGITWHS-DEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAP 95 (256)
T ss_pred HHHHHHHHCCCEEEEEeCC-ChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 4778888899998766422 222222211111 12223333223 47889999999999988876 567777765332
Q ss_pred -CCCChHHHHHHH
Q psy15360 91 -PDMDPEHVQVLI 102 (109)
Q Consensus 91 -~~tp~eNi~a~v 102 (109)
.+.+.|....++
T Consensus 96 ~~~~~~~~~~~~~ 108 (256)
T PRK12743 96 FLDMDFDEWRKIF 108 (256)
T ss_pred hhhCCHHHHHHHH
Confidence 234555554443
No 72
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=74.17 E-value=23 Score=25.68 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=40.7
Q ss_pred hhHHHHhccCCceEeee--cccChhhHhhhhcCC--cccc-CCCccc---------cc-ccHHHHHHHHHHHHHHhcc
Q psy15360 16 YALEELNQTKYDIVGID--WTIEPSLARSIIKNK--TLQG-NLDPCA---------LY-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id--~~~d~~~~~~~~g~~--~l~G-Nidp~~---------L~-gt~e~i~~~~~~~l~~~~~ 78 (109)
..++.++++|++.+.+- +..++++.++.+... .+.. ++.+.- +. +..++..+..+++++.+..
T Consensus 19 ~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (258)
T PRK09997 19 ARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARA 96 (258)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHH
Confidence 48888999999999873 335788888887654 3321 232211 11 3456667778888887764
No 73
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=73.58 E-value=20 Score=27.39 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=58.4
Q ss_pred CCcEEEe-ecch--hhhHHHHhccCCceEeeecccChhh------HhhhhcCC-ccccC--CCcccccccHHHHHHHHHH
Q psy15360 4 DVPMTIF-AKGA--HYALEELNQTKYDIVGIDWTIEPSL------ARSIIKNK-TLQGN--LDPCALYASKEKLRKIGTQ 71 (109)
Q Consensus 4 ~~pvi~~-~~g~--~~~l~~l~~~g~d~~~id~~~d~~~------~~~~~g~~-~l~GN--idp~~L~gt~e~i~~~~~~ 71 (109)
+..+++. ..++ ...++.|.+.|...+. -+++++ -.+.++.- -+-+. +|-.++.-+++.+-+.+++
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~---pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e 84 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVG---GVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADAILE 84 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEE---EECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHH
Confidence 3444444 4453 3478888887775331 233332 12222222 23343 7777777788899999999
Q ss_pred HHHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 72 MAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 72 ~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
|.+..-+.-.|++.|= +.+.-+.+.+.+++++
T Consensus 85 ~~~~gvk~avI~s~Gf------~~~~~~~l~~~a~~~g 116 (291)
T PRK05678 85 AIDAGIDLIVCITEGI------PVLDMLEVKAYLERKK 116 (291)
T ss_pred HHHCCCCEEEEECCCC------CHHHHHHHHHHHHHcC
Confidence 9886434557788773 3565568888888764
No 74
>PRK00915 2-isopropylmalate synthase; Validated
Probab=73.19 E-value=44 Score=27.42 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
..|.+++.+.+.+.++.++..|.-+..+|.-...++++-+..+++++.++
T Consensus 112 ~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~ 161 (513)
T PRK00915 112 KMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDA 161 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHc
Confidence 36888888888888888776555566676666678899999988888765
No 75
>TIGR03860 FMN_nitrolo FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents.
Probab=72.86 E-value=5.8 Score=31.54 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=33.4
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
.+.||||+|.++..+.++..+-.||+|.+.. . ++.++.|++.|
T Consensus 358 ~~vGtpe~vad~l~~~~~~~g~dgf~l~~~~-~-----p~~l~~f~~~V 400 (422)
T TIGR03860 358 VFVGTPEQVADQLEEWFEEGAADGFNLMPPV-L-----PGGLEDFVDLV 400 (422)
T ss_pred eEeeCHHHHHHHHHHHHHhcCCCeEEEeCCC-C-----cccHHHHHHhc
Confidence 4679999999999998876554678888775 2 27788888765
No 76
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=72.53 E-value=7.7 Score=24.53 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.+.-.+.++++.+++..-||..=.+|||+ .+-++.+.+++++|
T Consensus 9 ~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~----~~l~~~~~~~~~~f 52 (116)
T PF14226_consen 9 DPADREEVAEQLRDACEEWGFFYLVNHGIP----QELIDRVFAAAREF 52 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHTSEEEEESSSSS----HHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCEEEEeccccc----chhhHHHHHHHHHH
Confidence 344555566666666666778777888865 47888888888765
No 77
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=72.41 E-value=11 Score=28.35 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccC-------CCCChHHHHHHHHHhhhhC
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIY-------PDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~-------~~tp~eNi~a~v~a~~~~~ 109 (109)
..++++++++++++++.....--++..|.... +..+.|.++++++++++++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g 173 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAG 173 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcC
Confidence 46789999999999987332222344443222 2467899999999998763
No 78
>PRK08589 short chain dehydrogenase; Validated
Probab=71.83 E-value=35 Score=24.68 Aligned_cols=94 Identities=12% Similarity=0.214 Sum_probs=54.6
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-cc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
+++..+++. .+...+.+.|.+++-++-.-.+.+..+.+.. ..+++.+..+ +.+++++.+.++++.+.+++ ..
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 85 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEIKEQFGRVDV 85 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcCE
Confidence 445555432 4777788899999877654223333333321 1234444334 56788999999999888776 56
Q ss_pred chhccCCccC----CCCChHHHHHHH
Q psy15360 81 YIANLGHGIY----PDMDPEHVQVLI 102 (109)
Q Consensus 81 ~Il~~gcgi~----~~tp~eNi~a~v 102 (109)
.|.+.|-.-+ .+.|.|..+.++
T Consensus 86 li~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (272)
T PRK08589 86 LFNNAGVDNAAGRIHEYPVDVFDKIM 111 (272)
T ss_pred EEECCCCCCCCCCcccCCHHHHHHHH
Confidence 6666653211 245666554443
No 79
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.00 E-value=20 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEeecch------hhhHHHHhccCCceEeee
Q psy15360 7 MTIFAKGA------HYALEELNQTKYDIVGID 32 (109)
Q Consensus 7 vi~~~~g~------~~~l~~l~~~g~d~~~id 32 (109)
+-|+..|- .+.+..+.+.|+|.+++|
T Consensus 3 i~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 3 IPYITAGDPDLETTLEILKALVEAGADIIELG 34 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 45666663 135666778999999997
No 80
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.36 E-value=37 Score=24.35 Aligned_cols=89 Identities=8% Similarity=0.085 Sum_probs=50.2
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCC--ccccCCCcccccccHHHHHHHHHHHHHHhcc
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNK--TLQGNLDPCALYASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~--~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~ 78 (109)
++++..+++. .+...+.+.|.+++-.+-..+ +.++.+.++.+ .++++ +.+++++++..+++.+.+++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D------l~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATD------ITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEec------CCCHHHHHHHHHHHHHHhCC
Confidence 3445554432 477788889999887664322 34444444332 22222 35778888888888887765
Q ss_pred -ccchhccCCcc--CCCCChHHHHH
Q psy15360 79 -SRYIANLGHGI--YPDMDPEHVQV 100 (109)
Q Consensus 79 -~g~Il~~gcgi--~~~tp~eNi~a 100 (109)
...|.+.|-.. +.+.+.|....
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~ 105 (261)
T PRK08265 81 VDILVNLACTYLDDGLASSRADWLA 105 (261)
T ss_pred CCEEEECCCCCCCCcCcCCHHHHHH
Confidence 45555555221 12455554433
No 81
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=70.24 E-value=24 Score=23.11 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=48.4
Q ss_pred hhHHHHhccCCceE-eeecccChhhHh---hhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc
Q psy15360 16 YALEELNQTKYDIV-GIDWTIEPSLAR---SIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~-~id~~~d~~~~~---~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi 89 (109)
.+...+.+.|...+ .+.-..+.+.+. +.+. .-..++.+.-+ +.+++++++.++++.+..++ ...|.+.|..-
T Consensus 15 ~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 15 ALARALARRGARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred HHHHHHHhcCceEEEEeeeccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 36677777776544 333321122222 2222 11233444333 57889999999999988776 66676766544
Q ss_pred C---CCCChHHHHHHHH
Q psy15360 90 Y---PDMDPEHVQVLID 103 (109)
Q Consensus 90 ~---~~tp~eNi~a~v~ 103 (109)
. .+.+.|.++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~ 109 (167)
T PF00106_consen 93 DGSLDDLSEEELERVFR 109 (167)
T ss_dssp SBSGGGSHHHHHHHHHH
T ss_pred ccccccccchhhhhccc
Confidence 2 2455666666654
No 82
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=70.14 E-value=29 Score=25.94 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=49.8
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHh---hhhcCC--ccccCCCcc-cccccHHHHHHHHHHHHHHhccccchhccCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLAR---SIIKNK--TLQGNLDPC-ALYASKEKLRKIGTQMAKEFGKSRYIANLGHG 88 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~---~~~g~~--~l~GNidp~-~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg 88 (109)
..++...++|++.+.+-..+ |+..++ +...+. .+..+++-. .-.-+++.+.+.++++.+. |...++..-.
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~---Ga~~i~l~DT 171 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM---GADSICIKDM 171 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc---CCCEEEEcCC
Confidence 45666778999988774322 333222 222222 344455421 1134788888888888776 4455555544
Q ss_pred cCCCCChHHHHHHHHHhhh
Q psy15360 89 IYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 89 i~~~tp~eNi~a~v~a~~~ 107 (109)
+.-.+ |+-+..+++++++
T Consensus 172 ~G~~~-P~~v~~lv~~l~~ 189 (275)
T cd07937 172 AGLLT-PYAAYELVKALKK 189 (275)
T ss_pred CCCCC-HHHHHHHHHHHHH
Confidence 44333 5567777777664
No 83
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=70.14 E-value=16 Score=26.69 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCcEEEeecchh-hhHHHHhccCCc--eEeee-cccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhccc
Q psy15360 4 DVPMTIFAKGAH-YALEELNQTKYD--IVGID-WTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGKS 79 (109)
Q Consensus 4 ~~pvi~~~~g~~-~~l~~l~~~g~d--~~~id-~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~ 79 (109)
+.|+++|+.+.. .+++.+.+.+.. .+-+= +.=+..++++.+... +.=.|.+.+.+-+ .++.++++......
T Consensus 124 ~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g-~~~S~~~~~~~~~----~~~~~~~~~~ip~d 198 (255)
T PF01026_consen 124 NLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLG-CYFSFSGAITFKN----SKKVRELIKAIPLD 198 (255)
T ss_dssp TCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTT-EEEEEEGGGGSTT----SHHHHHHHHHS-GG
T ss_pred CCcEEEecCCcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcC-ceEEecccccccc----cHHHHHHHhcCChh
Confidence 689999999986 589988888742 22121 223666777766322 2223334333322 23355666555546
Q ss_pred cchhccCCc-cC------CCCChHHHHHHHHHhh
Q psy15360 80 RYIANLGHG-IY------PDMDPEHVQVLIDAIH 106 (109)
Q Consensus 80 g~Il~~gcg-i~------~~tp~eNi~a~v~a~~ 106 (109)
++++-|..- +. ....+.++...++.+.
T Consensus 199 rillETD~P~~~~~~~~~~~~~p~~i~~~~~~la 232 (255)
T PF01026_consen 199 RILLETDAPYLAPDPYRGKPNEPSNIPKVAQALA 232 (255)
T ss_dssp GEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHH
T ss_pred hEEEcCCCCcCCccccCCCCCChHHHHHHHHHHH
Confidence 788888852 11 2456777877776554
No 84
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=69.51 E-value=37 Score=24.02 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=51.7
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
++++..+++. .+...+.+.|..++.++-..+ +.++.+.+. ...+++....+ +.+++.+.+.++++.+.+++
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR--AAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 3444444432 377778889999887765321 222222221 11123333333 46788888888888887766
Q ss_pred ccchhccCCcc---CCCCChHHHHHH
Q psy15360 79 SRYIANLGHGI---YPDMDPEHVQVL 101 (109)
Q Consensus 79 ~g~Il~~gcgi---~~~tp~eNi~a~ 101 (109)
...|.+.|... ..+.+.+.++.+
T Consensus 90 d~vi~~ag~~~~~~~~~~~~~~~~~~ 115 (256)
T PRK06124 90 DILVNNVGARDRRPLAELDDAAIRAL 115 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHH
Confidence 56666666432 124555554443
No 85
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.49 E-value=37 Score=24.03 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=52.0
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|..++-++... ++.++.+.+. ...+++..... +.+++++++.++++.+.+++ .
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR--AEGGEAVALAGDVRDEAYAKALVALAVERFGGLD 85 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455555432 47788889999988776422 1222222221 11122222222 46788999999988888765 5
Q ss_pred cchhccCCcc--C--CCCChHHHHHHH
Q psy15360 80 RYIANLGHGI--Y--PDMDPEHVQVLI 102 (109)
Q Consensus 80 g~Il~~gcgi--~--~~tp~eNi~a~v 102 (109)
..|.+.|-.- . .+++.|.++.++
T Consensus 86 ~li~~ag~~~~~~~~~~~~~~~~~~~~ 112 (254)
T PRK07478 86 IAFNNAGTLGEMGPVAEMSLEGWRETL 112 (254)
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHH
Confidence 5666666321 1 245566665544
No 86
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=69.33 E-value=6.7 Score=30.33 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHhccCCceEeeecccChhhHhhhh----------cCC---ccccCCCcc--cccc-cHHHHHHHHHHHHHHhccccc
Q psy15360 18 LEELNQTKYDIVGIDWTIEPSLARSII----------KNK---TLQGNLDPC--ALYA-SKEKLRKIGTQMAKEFGKSRY 81 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~~d~~~~~~~~----------g~~---~l~GNidp~--~L~g-t~e~i~~~~~~~l~~~~~~g~ 81 (109)
++-|.+-|+|++-+.-..|+.++|..+ |.+ .+.|-++.. +|.| +++++-..++.+ +.+
T Consensus 149 ~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~------~~~ 222 (311)
T COG0646 149 VEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHL------GPD 222 (311)
T ss_pred HHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhcc------CCc
Confidence 344677899999888777776655443 222 356777765 3444 445544443322 678
Q ss_pred hhccCCccCCCCChHHHHHH
Q psy15360 82 IANLGHGIYPDMDPEHVQVL 101 (109)
Q Consensus 82 Il~~gcgi~~~tp~eNi~a~ 101 (109)
+++.-|++.|+.=.++++.+
T Consensus 223 ~vGlNCa~Gp~~m~~~l~~l 242 (311)
T COG0646 223 AVGLNCALGPDEMRPHLREL 242 (311)
T ss_pred EEeeccccCHHHHHHHHHHH
Confidence 89999998885444444443
No 87
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=69.01 E-value=20 Score=25.92 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHhccCCceEee-----ecccChhhHhhhhc---CC--ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCc
Q psy15360 19 EELNQTKYDIVGI-----DWTIEPSLARSIIK---NK--TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHG 88 (109)
Q Consensus 19 ~~l~~~g~d~~~i-----d~~~d~~~~~~~~g---~~--~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg 88 (109)
..+.+.|+|.|-| |..+|.+..++... +. ++.=-||- ++ +-.+..+.+++. + -.-||.+|..
T Consensus 79 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~-----~~-d~~~al~~L~~l-G-~~rVLTSGg~ 150 (201)
T PF03932_consen 79 RMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDE-----VP-DPEEALEQLIEL-G-FDRVLTSGGA 150 (201)
T ss_dssp HHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGG-----SS-THHHHHHHHHHH-T--SEEEESTTS
T ss_pred HHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHH-----hC-CHHHHHHHHHhc-C-CCEEECCCCC
Confidence 3456789998766 45677665554442 21 22223332 11 133444555554 2 2458888877
Q ss_pred cCCCCChHHHHHHHHHhh
Q psy15360 89 IYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 89 i~~~tp~eNi~a~v~a~~ 106 (109)
-+...-.++++++++.++
T Consensus 151 ~~a~~g~~~L~~lv~~a~ 168 (201)
T PF03932_consen 151 PTALEGIENLKELVEQAK 168 (201)
T ss_dssp SSTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 666667788888887653
No 88
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.84 E-value=28 Score=25.48 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCcEEEe------ecchhhhHHHHhccCCceEeee-cccC-hhhHhhhhcCCccccCCCccccc--ccHH
Q psy15360 4 DVPMTIF------AKGAHYALEELNQTKYDIVGID-WTIE-PSLARSIIKNKTLQGNLDPCALY--ASKE 63 (109)
Q Consensus 4 ~~pvi~~------~~g~~~~l~~l~~~g~d~~~id-~~~d-~~~~~~~~g~~~l~GNidp~~L~--gt~e 63 (109)
++|++++ ..+-..+++.+.++|+|.+.+= -..+ ..+..+.+. .+-.=|+++.+++ .|+.
T Consensus 74 ~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~-~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 74 SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE-IIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH-HHHHcCCCEEEEECCCCCH
Confidence 5687443 2344457889999999998772 1111 123322221 1233477886553 4543
No 89
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=68.50 E-value=32 Score=27.56 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.0
Q ss_pred ccccCCCcc----cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 48 TLQGNLDPC----ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 48 ~l~GNidp~----~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+...-.+. .|..|.+++.+.+++.++.++..|.-+.-.+.-...|++|.+.++++++.++
T Consensus 94 ~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 94 HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHc
Confidence 345555543 2346888888888888888776444444344445589999998888887654
No 90
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.23 E-value=10 Score=28.95 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=46.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++-.+..+ ..++.+... -..+||..++ ...+.+++.+++.|+.++
T Consensus 203 ~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i~~~g 280 (285)
T PRK07709 203 GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKD--QEVYDPRKFIGPGRDAIKATVIGKIREFG 280 (285)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689989954 554 46777788999888887533221 123333211 1247887554 455789999999998876
No 91
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=67.78 E-value=11 Score=28.82 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=47.3
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. .-+....+.|+.=+.++-.+..+ ..++.+.+. -+.+||..+ ....+.+++.+++.|+.++
T Consensus 202 ~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (286)
T PRK12738 202 DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAEN--PQGNDPRYYMRVGMDAMKEVVRNKINVCG 279 (286)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999954 554 46677788999888887543222 223333221 123788755 4556889999999999876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 280 s 280 (286)
T PRK12738 280 S 280 (286)
T ss_pred C
Confidence 3
No 92
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.66 E-value=33 Score=25.10 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.3
Q ss_pred hhHHHHhccCCceEeee
Q psy15360 16 YALEELNQTKYDIVGID 32 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id 32 (109)
+.++.++++|++.+.+.
T Consensus 25 e~~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMS 41 (283)
T ss_pred HHHHHHHHcCCCeEEEe
Confidence 57888899999999774
No 93
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=67.63 E-value=27 Score=25.72 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=48.3
Q ss_pred CCCcEEEeecc---hh-hhHHHHhccCCc-----eEeeecccChhhHhhhhcCCccccCCCcccccc-----cHHHHHHH
Q psy15360 3 NDVPMTIFAKG---AH-YALEELNQTKYD-----IVGIDWTIEPSLARSIIKNKTLQGNLDPCALYA-----SKEKLRKI 68 (109)
Q Consensus 3 ~~~pvi~~~~g---~~-~~l~~l~~~g~d-----~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~g-----t~e~i~~~ 68 (109)
-+.|++.|+.. .. ..++.|.+.|+. +.|.+..-|++.+++.+...+..+ ++....+. +.+.-.+.
T Consensus 148 ~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~-~~~~~~~~~~~~~~~~~~~~~ 226 (293)
T cd00530 148 TGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLE-FDGIGKDKIFGYPSDETRADA 226 (293)
T ss_pred HCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEE-eCCCCcccccCCCCHHHHHHH
Confidence 36899999886 32 578888888874 335553346677766654332211 11111111 22445566
Q ss_pred HHHHHHHhccccchhccCCcc
Q psy15360 69 GTQMAKEFGKSRYIANLGHGI 89 (109)
Q Consensus 69 ~~~~l~~~~~~g~Il~~gcgi 89 (109)
++++++.......++++...-
T Consensus 227 l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 227 VKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred HHHHHHCCCcCCEEEeCCcCc
Confidence 777777643356677776543
No 94
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.46 E-value=11 Score=28.73 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=47.2
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++..+.. ...++.+.. --+.+||..++ ...+.+++.+++.++.++
T Consensus 202 ~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (284)
T PRK12737 202 SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYE--NPKANDPRKYMTPGKAAMKEVVREKIKVCG 279 (284)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHh--CcCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589999954 554 4667678899988888754322 222333322 12347887554 556889999999998865
No 95
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=67.46 E-value=24 Score=28.27 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=53.9
Q ss_pred hhHHHHhccCC--ceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCC
Q psy15360 16 YALEELNQTKY--DIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD 92 (109)
Q Consensus 16 ~~l~~l~~~g~--d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~ 92 (109)
.++..|.+.|+ .++-++..-+--.-.+.+..- -+-..+|..++.-+++.+.+.++++.+..-+.-+|++.|=.-...
T Consensus 25 ~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~ 104 (447)
T TIGR02717 25 AIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGE 104 (447)
T ss_pred HHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCc
Confidence 47788888887 455444332211112233322 345677777777788999999999988643455677766322111
Q ss_pred CChHHHHHHHHHhhhh
Q psy15360 93 MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 93 tp~eNi~a~v~a~~~~ 108 (109)
--.+--+++++.++++
T Consensus 105 ~g~~~~~~l~~~a~~~ 120 (447)
T TIGR02717 105 EGAELEQELVEIARKY 120 (447)
T ss_pred chHHHHHHHHHHHHHc
Confidence 1122236788887765
No 96
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.33 E-value=39 Score=27.84 Aligned_cols=50 Identities=10% Similarity=-0.058 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCc---cCCCCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHG---IYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg---i~~~tp~eNi~a~v~a~~~~ 108 (109)
..|.+++.+.+++.++.++..|.-+..+|. -...++++-+..+++++.+.
T Consensus 118 ~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~ 170 (524)
T PRK12344 118 RTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEA 170 (524)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhC
Confidence 357788888888888877654443344444 12357888888888777654
No 97
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=67.14 E-value=8.8 Score=25.18 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=39.6
Q ss_pred ChhhHhhhhcCC-ccccCCCc-c--cccc--cHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 36 EPSLARSIIKNK-TLQGNLDP-C--ALYA--SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 36 d~~~~~~~~g~~-~l~GNidp-~--~L~g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
+++...+.++.. ..+|++|. . ++.| +++++++..++.|+. |++-+.|+-| +|..
T Consensus 34 ~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~yI~~-----yVlC~~C~sp-dT~l 93 (110)
T smart00653 34 PPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRYIKE-----YVLCPECGSP-DTEL 93 (110)
T ss_pred CHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHHHHh-----cEECCCCCCC-CcEE
Confidence 344455666666 78899887 3 3456 688999999999976 9999999876 4543
No 98
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.88 E-value=13 Score=26.39 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=38.6
Q ss_pred CCcEEEeecchhh-hHHHHhccCCceEeeecc-cChhhHhhhhcCCccccCCCcccccccHHHHHHHH
Q psy15360 4 DVPMTIFAKGAHY-ALEELNQTKYDIVGIDWT-IEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIG 69 (109)
Q Consensus 4 ~~pvi~~~~g~~~-~l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~ 69 (109)
++|++........ .++.+.++|+|.+.++.. .+...+++.+... ..=++++.....+++++++..
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-~~~g~~~~v~v~~~~e~~~~~ 138 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-RELGMEVLVEVHDEEELERAL 138 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-HHcCCeEEEEECCHHHHHHHH
Confidence 5788864333443 788888999999987542 3334455544322 222666644456777755543
No 99
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=66.76 E-value=19 Score=24.42 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHhccCCceEeeecc----c-----ChhhHhhhhcCC-ccccCCCcccc--c-----c-c---HHHHHHHHHHHHHHh
Q psy15360 18 LEELNQTKYDIVGIDWT----I-----EPSLARSIIKNK-TLQGNLDPCAL--Y-----A-S---KEKLRKIGTQMAKEF 76 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~----~-----d~~~~~~~~g~~-~l~GNidp~~L--~-----g-t---~e~i~~~~~~~l~~~ 76 (109)
++.++++|++.+.+... . ++.+.++.+.+. .-...+.+... . + + -++..+..++.++.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 45678899998877421 1 245666666554 22222222111 1 1 1 133344555666665
Q ss_pred cc---ccchhccC--CccCCCCChHHHHHHHHHh
Q psy15360 77 GK---SRYIANLG--HGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 77 ~~---~g~Il~~g--cgi~~~tp~eNi~a~v~a~ 105 (109)
.. ..+++.+| ..-+.....++...+++..
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l 114 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENL 114 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHH
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHH
Confidence 43 34555555 3333344445555544443
No 100
>PF11592 AvrPto: Central core of the bacterial effector protein AvrPto; InterPro: IPR020996 This entry represents the bacterial effector protein AvrPto, from Pseudomonas syringae and in particular the central core region of the protein that consists of a three-helix bundle motif. AvrPto is part of a type III secretion system from P.syringae which is involved in the bacterial speck disease of tomato. In resistant plants, AvrPto interacts with the host Pto kinase, which elicits an antibacterial defence response. In plants lacking resistance, the Pto kinase is not present and AvrPto acts as a virulence factor, promoting bacterial growth []. ; PDB: 1R5E_A 2QKW_A.
Probab=66.58 E-value=13 Score=24.30 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=42.0
Q ss_pred ccccCCCcccccccHHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 48 TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 48 ~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.+|=-|.-|.-.--.+.+.++..|+.+.- ++|+=+.+--.|..+|.|+|..|-..+-+|
T Consensus 27 ~Fi~n~ap~sLR~~yn~L~r~Tq~~l~~Adi~HR~mtg~s~~~~g~~~~e~V~~m~s~is~W 88 (105)
T PF11592_consen 27 AFINNEAPQSLRDRYNNLYRRTQRTLDMADIQHRYMTGDSGVNPGTTPHENVNSMRSAISAW 88 (105)
T ss_dssp CCCTTTS-CCHHHHHHHHHHHHHHHHHHHCCCHCCCTTSSCECSSS-HHHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHHH
Confidence 6777777777765667889999999998763 777666553344457778887777666555
No 101
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=65.76 E-value=42 Score=25.26 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=44.7
Q ss_pred CCceEeee-----cccChhhHhhhhcCCccccCCCccccc-c-cHHHHHHHHHHHHHHhccccchhccCCccCC----CC
Q psy15360 25 KYDIVGID-----WTIEPSLARSIIKNKTLQGNLDPCALY-A-SKEKLRKIGTQMAKEFGKSRYIANLGHGIYP----DM 93 (109)
Q Consensus 25 g~d~~~id-----~~~d~~~~~~~~g~~~l~GNidp~~L~-g-t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~----~t 93 (109)
.+|++-+. ...|+.++++.-.. .+.+ |.++- | +++.|.+..+. .-|.|++++=.-+- ..
T Consensus 171 ~aDavivtG~~TG~~~d~~~l~~vr~~---~~~~-PvllggGvt~eNv~e~l~~------adGviVgS~~K~~G~~~n~~ 240 (257)
T TIGR00259 171 LADAVILSGKTTGTEVDLELLKLAKET---VKDT-PVLAGSGVNLENVEELLSI------ADGVIVATTIKKDGVFNNFV 240 (257)
T ss_pred CCCEEEECcCCCCCCCCHHHHHHHHhc---cCCC-eEEEECCCCHHHHHHHHhh------CCEEEECCCcccCCccCCCc
Confidence 48888552 34566665544210 1112 43332 2 66777776653 25788888755222 38
Q ss_pred ChHHHHHHHHHhhhh
Q psy15360 94 DPEHVQVLIDAIHDA 108 (109)
Q Consensus 94 p~eNi~a~v~a~~~~ 108 (109)
.++.+++|++++++.
T Consensus 241 D~~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 241 DQARVSQFVEKVAHG 255 (257)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999864
No 102
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=65.63 E-value=28 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCC-CCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYP-DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~-~tp~eNi~a~v~a~~~~ 108 (109)
+||.|.+..+ ..++.|.=+|+|=...| .=.++.|++|+++++++
T Consensus 164 ~peNv~~ai~----~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 164 NPDNVAEAIR----QVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred CHHHHHHHHH----hcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 5677766654 33444555788888755 47889999999998764
No 103
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=65.59 E-value=34 Score=25.64 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=18.6
Q ss_pred CcEEEeecch------hhhHHHHhccCCceEee
Q psy15360 5 VPMTIFAKGA------HYALEELNQTKYDIVGI 31 (109)
Q Consensus 5 ~pvi~~~~g~------~~~l~~l~~~g~d~~~i 31 (109)
.-+-|...|- ..++..+.+.|+|++.+
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl 48 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIEL 48 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3455666662 24677788999999866
No 104
>PTZ00273 oxidase reductase; Provisional
Probab=65.12 E-value=9.7 Score=28.98 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++++.++.++++.+++..-||..=.+|||++ |-+.++.+++++|
T Consensus 18 ~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~----~l~~~~~~~~~~f 61 (320)
T PTZ00273 18 ESAEKMRVAKQIDEACRTWGFFYIVGHPIPQ----ERIEKVLKMAKTF 61 (320)
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEECCCCCH----HHHHHHHHHHHHH
Confidence 4455556667777777777787777998854 7788888887765
No 105
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=64.97 E-value=48 Score=23.59 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=53.9
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-cc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
+++..+++. .+...+.+.|..++-++..-+.+++.+.+.. .-+++..... ..+.+++.+.++++.+.+++ ..
T Consensus 17 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~ 94 (258)
T PRK06935 17 VAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEK--EGRKVTFVQVDLTKPESAEKVVKEALEEFGKIDI 94 (258)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 445544432 4777788899998767654234444444321 1123332223 46788899999988888766 56
Q ss_pred chhccCCccC---CCCChHHHHHHH
Q psy15360 81 YIANLGHGIY---PDMDPEHVQVLI 102 (109)
Q Consensus 81 ~Il~~gcgi~---~~tp~eNi~a~v 102 (109)
+|.+.|-..+ .+.+.+.++..+
T Consensus 95 li~~ag~~~~~~~~~~~~~~~~~~~ 119 (258)
T PRK06935 95 LVNNAGTIRRAPLLEYKDEDWNAVM 119 (258)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHH
Confidence 6666664321 245555554443
No 106
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=64.83 E-value=12 Score=27.01 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=39.0
Q ss_pred CCCcEEEeecchhhhHHHHhc-cCCceEeeecccChhhHhhhhcCC--ccccCCCcc
Q psy15360 3 NDVPMTIFAKGAHYALEELNQ-TKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDPC 56 (109)
Q Consensus 3 ~~~pvi~~~~g~~~~l~~l~~-~g~d~~~id~~~d~~~~~~~~g~~--~l~GNidp~ 56 (109)
.+..|+--.||...+|..|.+ -++++.+++ .|.+...+..... ++||++|-.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~g 67 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEG 67 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHh
Confidence 455677789999999999886 688888887 3566666656554 789998864
No 107
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=64.23 E-value=54 Score=24.23 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCCcEEEeecchh-hhHHHHhccCCc---eEeeecccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhcc
Q psy15360 3 NDVPMTIFAKGAH-YALEELNQTKYD---IVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 3 ~~~pvi~~~~g~~-~~l~~l~~~g~d---~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~ 78 (109)
-+.||++|+.+.. ..++.+.+.+.. ++|- +.=+++.|++.+.-.... .|.+.+.+-..+.++ +++.....
T Consensus 126 ~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~-fsG~~~~a~~~l~~G~~i-S~~g~it~~~~~~~~----~~~~~ipl 199 (258)
T PRK11449 126 YDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHG-FSGSLQQAERFVQLGYKI-GVGGTITYPRASKTR----DVIAKLPL 199 (258)
T ss_pred hCCCEEEEecCccHHHHHHHHhcCCCCCeEEEc-CCCCHHHHHHHHHCCCEE-EeCccccccCcHHHH----HHHHhCCh
Confidence 4789999999986 478877776542 3322 223677777766543111 233333332323444 44443333
Q ss_pred ccchhccCCcc
Q psy15360 79 SRYIANLGHGI 89 (109)
Q Consensus 79 ~g~Il~~gcgi 89 (109)
...++-|..-.
T Consensus 200 driL~ETD~P~ 210 (258)
T PRK11449 200 ASLLLETDAPD 210 (258)
T ss_pred hhEEEecCCCC
Confidence 55666666543
No 108
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.10 E-value=49 Score=23.44 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=51.9
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
++++..+++. .+...+.+.|.+++-.+-..+ +++..+.+. ...+++.+..+ +.+++.+++.++++.+.+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG--TSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 3455555432 477778899999886654221 222222221 11123333223 46788999999888888776
Q ss_pred ccchhccCCccC---CCCChHHHHHHH
Q psy15360 79 SRYIANLGHGIY---PDMDPEHVQVLI 102 (109)
Q Consensus 79 ~g~Il~~gcgi~---~~tp~eNi~a~v 102 (109)
...|.+.|-... .+++.+..+.++
T Consensus 88 d~lv~~ag~~~~~~~~~~~~~~~~~~~ 114 (253)
T PRK05867 88 DIAVCNAGIITVTPMLDMPLEEFQRLQ 114 (253)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHH
Confidence 556666653221 134555554433
No 109
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.98 E-value=15 Score=28.04 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|+.+|.+ |.. +-+....+.|+.-+.++-.+... ..++.+... -..+||.-++ ...+.+++.+++.|+.++
T Consensus 199 ~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 276 (283)
T PRK07998 199 PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNN--HNEANLARVMAKAKQAVEEDVYSKIKMMN 276 (283)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHHhC--cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689988854 554 46677788999988887533221 122323211 1237776554 456889999999999876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 277 s 277 (283)
T PRK07998 277 S 277 (283)
T ss_pred C
Confidence 4
No 110
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=63.89 E-value=4.4 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=22.7
Q ss_pred ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 79 SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 79 ~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++- ++.|||+.-..+.++...+.+..++.
T Consensus 34 P~~-i~~~CG~al~~~~~d~~~i~~~l~~~ 62 (73)
T PF11823_consen 34 PRE-ISAGCGLALRFEPEDLEKIKEILEEN 62 (73)
T ss_pred Chh-ccCCCCEEEEEChhhHHHHHHHHHHC
Confidence 445 49999999888888888888776653
No 111
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.75 E-value=14 Score=28.05 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=47.0
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. .-+....+.|+.=+.++-.+..+ ..++.+... -..+||..+ ....+.+++.+++.++.++
T Consensus 202 ~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (284)
T PRK12857 202 NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKN--PDEIDPRKILGPAREAAKEVIREKIRLFG 279 (284)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589988944 554 46777788999888887543221 123333221 124788755 4566889999999998865
No 112
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.59 E-value=62 Score=24.50 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=52.6
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|.+++-++-.- .+.+..+.+. ..-+++..... +.+++++++.++++.+.+++ .
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 455555442 36677888999887665321 1222222221 11112222222 46788999988888888776 6
Q ss_pred cchhccCCccC---CCCChHHHHHHH
Q psy15360 80 RYIANLGHGIY---PDMDPEHVQVLI 102 (109)
Q Consensus 80 g~Il~~gcgi~---~~tp~eNi~a~v 102 (109)
.+|.+.|.... .+++.|.++.++
T Consensus 88 ~lInnAg~~~~~~~~~~~~~~~~~~~ 113 (334)
T PRK07109 88 TWVNNAMVTVFGPFEDVTPEEFRRVT 113 (334)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHH
Confidence 67777775432 245666655543
No 113
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=63.57 E-value=14 Score=28.14 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....++|+.=+.++-.+..+ ..++.+... -+.+||..++ .-.+.+++.+++.|+.++
T Consensus 200 ~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 277 (282)
T TIGR01858 200 DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAEN--PQANDPRYYMRPGKDAMKKVVRNKINVCG 277 (282)
T ss_pred CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999955 554 46666788999888887543221 223333222 1247887553 455889999999998865
No 114
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.34 E-value=39 Score=25.26 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=53.6
Q ss_pred CCCcEEEeec-------chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccccc--ccH-HHHHHHHHHH
Q psy15360 3 NDVPMTIFAK-------GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY--ASK-EKLRKIGTQM 72 (109)
Q Consensus 3 ~~~pvi~~~~-------g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~-e~i~~~~~~~ 72 (109)
.++|+++..- |-..+++.++++|+|++-+ .++.++|+.+.... +-.=++++..|. -|+ +.++.-++
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~-~~~~gl~~I~lvap~t~~eri~~i~~-- 163 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII-PDLPPEEAEELRAA-AKKHGLDLIFLVAPTTTDERLKKIAS-- 163 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHH-HHHcCCcEEEEeCCCCCHHHHHHHHH--
Confidence 3578665542 4446899999999999877 23455665544421 222367886543 343 33443322
Q ss_pred HHHhccccchh--ccCCccC--CCCChHHHHHHHHHhhhh
Q psy15360 73 AKEFGKSRYIA--NLGHGIY--PDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 73 l~~~~~~g~Il--~~gcgi~--~~tp~eNi~a~v~a~~~~ 108 (109)
. . .+||. +. -|+. ....++++.++++.+|++
T Consensus 164 --~-s-~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 164 --H-A-SGFVYYVSR-AGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred --h-C-CCcEEEEeC-CCCCCcccCCCccHHHHHHHHHhc
Confidence 2 2 45663 22 1211 122346677888887764
No 115
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=63.30 E-value=27 Score=21.43 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=32.8
Q ss_pred CcEEEeecchhhhHHHHhc--cCCceEeeecccC-hhhHhhhh-----cCC--ccccCC
Q psy15360 5 VPMTIFAKGAHYALEELNQ--TKYDIVGIDWTIE-PSLARSII-----KNK--TLQGNL 53 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~--~g~d~~~id~~~d-~~~~~~~~-----g~~--~l~GNi 53 (109)
..|+-..||+....-.+.+ .+..++.+|..-. ++.+++.. .++ .+++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 3467778998776555666 8889999986432 45556655 334 467888
No 116
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=63.25 E-value=74 Score=26.26 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHHHHHhccccc-hhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRY-IANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~-Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
..|.+++.+.+.++++.++..|+ .+..||.-...+++|-+..+++++.+++
T Consensus 201 ~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 201 KKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC
Confidence 36889999999999998876554 4788888888899999999998887653
No 117
>KOG0258|consensus
Probab=63.21 E-value=12 Score=30.21 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+.+++++.+.+..+.... -=.|+|+|.-...-...|||+.+++.+++++
T Consensus 199 d~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~ 248 (475)
T KOG0258|consen 199 DVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEG 248 (475)
T ss_pred CHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcC
Confidence 567888888777755554 4468999988888899999999999998764
No 118
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=62.92 E-value=16 Score=28.28 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=37.5
Q ss_pred hHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhcc
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~~ 78 (109)
-+....++|+.=+.++-.+... ..|+.+... -..+||.-++ ...+.+++.+++.|+.++.
T Consensus 240 ~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 303 (307)
T PRK05835 240 FLQESVKGGINKVNTDTDLRIAFIAEVRKVANED--KSQFDLRKFFSPAQLALKNVVKERMKLLGS 303 (307)
T ss_pred HHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhC--CccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555677899888887543222 223333221 2247887553 5568899999999988763
No 119
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=62.62 E-value=38 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred hhHHHHhccCCceEeeeccc--------ChhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI--------EPSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--------d~~~~~~~~g~~-~l~GNidp 55 (109)
.....+.+.|+|++.+|..- .+++.++.+++- .+.||+-+
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t 275 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT 275 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 46777889999999998621 356667766655 56667653
No 120
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=61.95 E-value=16 Score=27.93 Aligned_cols=72 Identities=15% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++-.+.. ...++.+... -..+||..++ ...+.+++.+++.|+.++
T Consensus 203 ~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~fg 280 (286)
T PRK08610 203 GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNND--KEVYDPRKYLGPAREAIKETVKGKIKEFG 280 (286)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999954 554 4677778899988888753322 1223333211 1237887554 556889999999999876
No 121
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=61.57 E-value=89 Score=25.57 Aligned_cols=74 Identities=11% Similarity=0.013 Sum_probs=50.9
Q ss_pred cChhhHhhhhc---CC--ccccCCCccc----ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 35 IEPSLARSIIK---NK--TLQGNLDPCA----LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 35 ~d~~~~~~~~g---~~--~l~GNidp~~----L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
-|+..+.+.+. .. .+..-..+.. |..|.+++.+.+++.++.++..+.-+..++.-...++++-+..+++++
T Consensus 76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~ 155 (494)
T TIGR00973 76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAA 155 (494)
T ss_pred HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 35665555432 11 3455555532 336889999988998888776566677777777789999999999988
Q ss_pred hhh
Q psy15360 106 HDA 108 (109)
Q Consensus 106 ~~~ 108 (109)
.+.
T Consensus 156 ~~~ 158 (494)
T TIGR00973 156 INA 158 (494)
T ss_pred HHc
Confidence 764
No 122
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=61.42 E-value=16 Score=27.85 Aligned_cols=72 Identities=11% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh--hh-HhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP--SL-ARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~--~~-~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++-.+.. .+ .++.+... -..+||..++ ...+.+++.+++.|+.++
T Consensus 202 ~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (284)
T PRK09195 202 NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEH--PEANDPRHYLQPAKSAMKDVVSKVIADCG 279 (284)
T ss_pred CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC--cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999944 654 4677778899988888754322 22 23333211 1247887553 456889999999998865
No 123
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=61.26 E-value=12 Score=29.03 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 66 RKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 66 ~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+++++++.+++..-||..=.+|||+ .+-+.++.+++++|
T Consensus 61 ~~~~~~l~~A~~~~GFf~l~nHGI~----~~l~~~~~~~~~~F 99 (348)
T PLN00417 61 REELSKLHSALSTWGVVQVMNHGIT----EAFLDKIYKLTKQF 99 (348)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCC----HHHHHHHHHHHHHH
Confidence 4456677777777788877889886 67788888887765
No 124
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=61.04 E-value=14 Score=28.75 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++.++.++.++++.+++..-||..=.+|||+ .+-+..+.+++++|
T Consensus 64 ~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~----~~l~~~~~~~~~~F 108 (361)
T PLN02758 64 GDNDELFSEILKLRLACEEWGFFQVINHGIE----LELLEEIEKVAREF 108 (361)
T ss_pred CChHHHHHHHHHHHHHHHhCeEEEEecCCCC----HHHHHHHHHHHHHH
Confidence 3556666777888888877788777789875 67888888887765
No 125
>PRK07985 oxidoreductase; Provisional
Probab=61.01 E-value=65 Score=23.78 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=50.8
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccC---hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIE---PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d---~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
+++..+++. .+...+.+.|.+++-.+..-+ ..++.+.+.. .-+++..... +.+++.+.+.++++.+.+++
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 128 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE--CGRKAVLLPGDLSDEKFARSLVHEAHKALGG 128 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 445555432 477778889999876542211 2223222211 0112221122 46788899988888887775
Q ss_pred -ccchhccCCcc----CCCCChHHHHHHH
Q psy15360 79 -SRYIANLGHGI----YPDMDPEHVQVLI 102 (109)
Q Consensus 79 -~g~Il~~gcgi----~~~tp~eNi~a~v 102 (109)
...|.+.|-.. ..+++.+.++.++
T Consensus 129 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 157 (294)
T PRK07985 129 LDIMALVAGKQVAIPDIADLTSEQFQKTF 157 (294)
T ss_pred CCEEEECCCCCcCCCChhhCCHHHHHHHH
Confidence 55666666432 2245666665544
No 126
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=60.87 E-value=41 Score=25.21 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCcEEEeecchhhhHHHHhccCCceEeeecc-cChhhHhhhhcCCccc---------------cCCCcc----cc--cc
Q psy15360 3 NDVPMTIFAKGAHYALEELNQTKYDIVGIDWT-IEPSLARSIIKNKTLQ---------------GNLDPC----AL--YA 60 (109)
Q Consensus 3 ~~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~~l~---------------GNidp~----~L--~g 60 (109)
.+..+.=..||...+-+.|+..|+.+..+|-. -.++.|+.......+. |-+|.. +| +-
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 34556677888888888999999999999843 3456665443322222 556654 23 35
Q ss_pred cHHHHHHHHHHHHH
Q psy15360 61 SKEKLRKIGTQMAK 74 (109)
Q Consensus 61 t~e~i~~~~~~~l~ 74 (109)
+|+.+-+++.+++.
T Consensus 139 dp~~~~~~c~~lvk 152 (243)
T COG2227 139 DPESFLRACAKLVK 152 (243)
T ss_pred CHHHHHHHHHHHcC
Confidence 67777666666653
No 127
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=60.80 E-value=15 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.+.++.+.+..-||..=.+|||++ |-+.++.+.+++|
T Consensus 55 ~~~~~L~~A~~~~GFf~l~nhGi~~----elid~~~~~~~~F 92 (120)
T PLN03176 55 EICNKIVEACEEWGVFQIVDHGVDA----KLVSEMTTLAKEF 92 (120)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCH----HHHHHHHHHHHHH
Confidence 3456666666667887778898774 7777787777664
No 128
>PRK07791 short chain dehydrogenase; Provisional
Probab=60.61 E-value=64 Score=23.64 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=52.4
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc----------ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHH
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI----------EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQ 71 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~----------d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~ 71 (109)
+++..+++. .+...+.+.|.+++-++-.. .+.++.+.+.. ..+++....+ +.+++++++.+++
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA--AGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh--cCCceEEEeCCCCCHHHHHHHHHH
Confidence 455555442 36677888999887665321 12222222211 1122222223 4688999999999
Q ss_pred HHHHhcc-ccchhccCCcc---CCCCChHHHHHHH
Q psy15360 72 MAKEFGK-SRYIANLGHGI---YPDMDPEHVQVLI 102 (109)
Q Consensus 72 ~l~~~~~-~g~Il~~gcgi---~~~tp~eNi~a~v 102 (109)
+.+.+++ ...|.+.|-.- ..+++.|..+.++
T Consensus 86 ~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~ 120 (286)
T PRK07791 86 AVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVI 120 (286)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHH
Confidence 9888776 56666665321 2345566555444
No 129
>PLN02591 tryptophan synthase
Probab=60.61 E-value=48 Score=24.69 Aligned_cols=97 Identities=9% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCcEEEeec-------chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccccc--ccH-HHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-------GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY--ASK-EKLRKIGTQMA 73 (109)
Q Consensus 4 ~~pvi~~~~-------g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~-e~i~~~~~~~l 73 (109)
++|++++.- |-..+++.++++|+|++=+- ++.++|..+... .+-.=++++..|. .|+ +.+++-++
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-DLP~ee~~~~~~-~~~~~gl~~I~lv~Ptt~~~ri~~ia~--- 152 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP-DLPLEETEALRA-EAAKNGIELVLLTTPTTPTERMKAIAE--- 152 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHH-HHHHcCCeEEEEeCCCCCHHHHHHHHH---
Confidence 568766544 33458899999999987442 234455443332 1333378887554 343 33333322
Q ss_pred HHhccccchhccC-CccCC--CCChHHHHHHHHHhhhh
Q psy15360 74 KEFGKSRYIANLG-HGIYP--DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 74 ~~~~~~g~Il~~g-cgi~~--~tp~eNi~a~v~a~~~~ 108 (109)
. . .|||--.+ -|+.- ..-++.+..+++.+|++
T Consensus 153 -~-~-~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~ 187 (250)
T PLN02591 153 -A-S-EGFVYLVSSTGVTGARASVSGRVESLLQELKEV 187 (250)
T ss_pred -h-C-CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc
Confidence 2 1 45554322 33332 12257788888888764
No 130
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.46 E-value=61 Score=23.32 Aligned_cols=85 Identities=7% Similarity=0.046 Sum_probs=47.9
Q ss_pred hHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc-----
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI----- 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi----- 89 (109)
+-..+.+.|.+++-.+..-...+..+.+... + |..-...+ +.+++++++.++++.+.+++ ...|.+.|..-
T Consensus 26 ~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~-~-g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~ 103 (260)
T PRK06603 26 IAQLAKKHGAELWFTYQSEVLEKRVKPLAEE-I-GCNFVSELDVTNPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELK 103 (260)
T ss_pred HHHHHHHcCCEEEEEeCchHHHHHHHHHHHh-c-CCceEEEccCCCHHHHHHHHHHHHHHcCCccEEEEccccCCccccc
Confidence 5567888999887554321122222222111 1 22111123 47889999999999888776 55666666421
Q ss_pred --CCCCChHHHHHHHH
Q psy15360 90 --YPDMDPEHVQVLID 103 (109)
Q Consensus 90 --~~~tp~eNi~a~v~ 103 (109)
..+++.|.++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~ 119 (260)
T PRK06603 104 GRYVDTSLENFHNSLH 119 (260)
T ss_pred CccccCCHHHHHHHHH
Confidence 12567777666554
No 131
>PRK11579 putative oxidoreductase; Provisional
Probab=60.28 E-value=74 Score=24.20 Aligned_cols=100 Identities=7% Similarity=0.079 Sum_probs=60.0
Q ss_pred CCCCCcEEEeecchh-h--hHHHHhcc-CCceEeeecccChhhHhhhhcCC--------ccc-cCCCcccccccH-HHHH
Q psy15360 1 MNNDVPMTIFAKGAH-Y--ALEELNQT-KYDIVGIDWTIEPSLARSIIKNK--------TLQ-GNLDPCALYASK-EKLR 66 (109)
Q Consensus 1 ~~~~~pvi~~~~g~~-~--~l~~l~~~-g~d~~~id~~~d~~~~~~~~g~~--------~l~-GNidp~~L~gt~-e~i~ 66 (109)
|+..+.+-+..+|.. . .++.+... ++.+..+- ..|.+.+++.++.. .+. ..+|-+. ..|| ..=.
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~-d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~-I~tp~~~H~ 78 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVS-SSDATKVKADWPTVTVVSEPQHLFNDPNIDLIV-IPTPNDTHF 78 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEE-CCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEE-EcCCcHHHH
Confidence 666677888888863 2 45656543 55555542 23444454444321 122 2344333 3344 4445
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.+.++++. |.+|| |.=|..+..+..++|++++++.
T Consensus 79 ~~~~~al~a---GkhVl---~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 79 PLAKAALEA---GKHVV---VDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred HHHHHHHHC---CCeEE---EeCCCCCCHHHHHHHHHHHHHh
Confidence 555666665 66777 6778899999999999999875
No 132
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.05 E-value=13 Score=28.26 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=32.5
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+++++.+.+ .-..|-.+| ..++|++++.++. +. ....+..+| +..++|++++.++
T Consensus 203 tleea~ea~-----~~gaDiI~LDn~s~e~l~~av~~-~~---~~~~leaSG-----GI~~~ni~~yA~t 258 (281)
T PRK06106 203 TLDQLEEAL-----ELGVDAVLLDNMTPDTLREAVAI-VA---GRAITEASG-----RITPETAPAIAAS 258 (281)
T ss_pred CHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHH-hC---CCceEEEEC-----CCCHHHHHHHHhc
Confidence 445555443 234555556 5778888877773 22 133455555 6778888877665
No 133
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=59.82 E-value=6.3 Score=31.01 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=29.7
Q ss_pred hhHHHHhccCCceEeeeccc--------ChhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI--------EPSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--------d~~~~~~~~g~~-~l~GNidp 55 (109)
.+.+.|.+.|+|++.+|-.. .+++.|+.+++- .+.||+-+
T Consensus 111 er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T 159 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVT 159 (352)
T ss_dssp HHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-S
T ss_pred HHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCC
Confidence 58888999999999998321 357888889866 88999754
No 134
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.77 E-value=23 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=32.4
Q ss_pred cccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHHHH
Q psy15360 49 LQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 49 l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+.-..|-.+| ..+||++++.++.+.....+ .--+..+| +..++|++++.++
T Consensus 199 ~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSG-----GI~~~ni~~yA~t 251 (278)
T PRK08385 199 AKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSG-----GITPENIEEYAKL 251 (278)
T ss_pred HHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEEC-----CCCHHHHHHHHHc
Confidence 3445565455 57888888887765443212 33466666 6688888887765
No 135
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.26 E-value=15 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=31.6
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC--ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~--~l~GNidp 55 (109)
.-+..|..||+|.+.+....+++.+.+.+..- .-|+..+.
T Consensus 61 DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~YQ~~~~~ 102 (110)
T PF06073_consen 61 DQLFYLRRCGFDSFELREDQDPEDALAALSDFSVSYQPSADE 102 (110)
T ss_pred HHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCcccCCCCCC
Confidence 35667889999999999888888888877764 56777663
No 136
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=59.06 E-value=19 Score=27.34 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++..+... .+++.+.. --+..||..+ ....+.+++.+++.|+.++
T Consensus 196 ~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 273 (276)
T cd00947 196 NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAE--NPKEFDPRKYLAPAIEAVKEVVKHKMELFG 273 (276)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHh--CCCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589989954 554 46777788999888887543221 12333321 1134777655 4566889999999988765
No 137
>PRK10812 putative DNAse; Provisional
Probab=58.95 E-value=72 Score=23.70 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCCcEEEeecchh-hhHHHHhccCCc----eEeeecccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhc
Q psy15360 3 NDVPMTIFAKGAH-YALEELNQTKYD----IVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 3 ~~~pvi~~~~g~~-~~l~~l~~~g~d----~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~ 77 (109)
-+.|+++|+.+.. ..++.|.+.+.. ++|-. .=+.+.+++.+.-.... .++..+.+.+.+.++ +++....
T Consensus 123 ~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~f-sG~~~~a~~~~~~G~~i-s~~g~~t~~~~~~~~----~~~~~ip 196 (265)
T PRK10812 123 LNKPVIVHTRDARADTLAILREEKVTDCGGVLHCF-TEDRETAGKLLDLGFYI-SFSGIVTFRNAEQLR----DAARYVP 196 (265)
T ss_pred hCCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEee-cCCHHHHHHHHHCCCEE-EECeeeecCccHHHH----HHHHhCC
Confidence 4789999999875 577877765543 23322 23666776666532111 122222333333443 4444322
Q ss_pred cccchhccCCc
Q psy15360 78 KSRYIANLGHG 88 (109)
Q Consensus 78 ~~g~Il~~gcg 88 (109)
....++.|.+.
T Consensus 197 ldrlLlETD~P 207 (265)
T PRK10812 197 LDRLLVETDSP 207 (265)
T ss_pred hhhEEEecCCC
Confidence 25667777653
No 138
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=58.80 E-value=19 Score=27.47 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=46.8
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++-.+.. ...++.+... -+.+||..+ ....+.+++.+++.++.++
T Consensus 206 ~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 283 (288)
T TIGR00167 206 NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAEN--KDYYDPRVWLRPGEKAMKEVVLEKIKLFG 283 (288)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589989954 554 4677778899988888753321 1223333211 224788755 3556889999999998875
No 139
>PRK07677 short chain dehydrogenase; Provisional
Probab=57.75 E-value=65 Score=22.78 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=48.0
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|..++.++-.- +..++.+.+.. ..+++...-. ..+++.+++.+.++.+.+++ ...|.+.|....
T Consensus 16 ~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~~~~~~ 93 (252)
T PRK07677 16 AMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGNFICP 93 (252)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCCCCCC
Confidence 47777888999887776432 22333333321 1122222212 35788899988888888776 555556654321
Q ss_pred -CCCChHHHHHHHH
Q psy15360 91 -PDMDPEHVQVLID 103 (109)
Q Consensus 91 -~~tp~eNi~a~v~ 103 (109)
.+.+.|.++.+++
T Consensus 94 ~~~~~~~~~~~~~~ 107 (252)
T PRK07677 94 AEDLSVNGWNSVID 107 (252)
T ss_pred cccCCHHHHHHHHh
Confidence 2456666555443
No 140
>KOG4175|consensus
Probab=57.69 E-value=77 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=20.8
Q ss_pred CCCCcEEEeecch------hhhHHHHhccCCceEee
Q psy15360 2 NNDVPMTIFAKGA------HYALEELNQTKYDIVGI 31 (109)
Q Consensus 2 ~~~~pvi~~~~g~------~~~l~~l~~~g~d~~~i 31 (109)
|+..-|-+..||. ..++.-+.++|.|++..
T Consensus 16 nknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIEL 51 (268)
T KOG4175|consen 16 NKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIEL 51 (268)
T ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEe
Confidence 3444455567762 35888899999999855
No 141
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=57.57 E-value=17 Score=29.19 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=48.0
Q ss_pred hHHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+..+....+|...+..|+ |+..|.+.+.++.+.=++...+.-+|.+..++..+ -+++.+.+ |-.|..+||+.
T Consensus 277 ~v~~~~~~~id~~~IGSCTngr~~Dl~~aA~vLkG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~ 356 (412)
T TIGR02086 277 PVSDVEGTEIDQVFIGSCTNGRIEDLRIAAEILEGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGP 356 (412)
T ss_pred cchhhcccceeEEEEeccCCCChHHHHHHHHHHcCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCcccc
Confidence 3556677778888888776 67888888876654445553333488665555544 34555544 66788999985
No 142
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.22 E-value=75 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=35.5
Q ss_pred hhHHHHhccCCceEeeecccC-----hhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-----PSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-----~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gc 87 (109)
.+...+.+.|++++.+-++.+ ++.+++.++ +++.|- .+ .-+++++++... . +..||+|||.
T Consensus 29 ~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGA---GT-VL~~~q~~~a~~----a--Ga~fiVsP~~ 94 (211)
T COG0800 29 PLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGA---GT-VLNPEQARQAIA----A--GAQFIVSPGL 94 (211)
T ss_pred HHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEcc---cc-ccCHHHHHHHHH----c--CCCEEECCCC
Confidence 466778899999998877653 455666665 333331 01 114666665543 1 1456666653
No 143
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=57.15 E-value=28 Score=28.50 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=26.5
Q ss_pred hhHHHHhccCCceEeeecc---c-----ChhhHhhhhcCC-ccccCCC
Q psy15360 16 YALEELNQTKYDIVGIDWT---I-----EPSLARSIIKNK-TLQGNLD 54 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~---~-----d~~~~~~~~g~~-~l~GNid 54 (109)
.....+.+.|+|++.+|.. . .+++.|+.+++- .+.||+-
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~ 291 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVV 291 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcC
Confidence 4777889999999999862 1 255666666544 4555553
No 144
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=56.97 E-value=20 Score=27.29 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=33.8
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+++++++.+ .-+.|-.+| ..+||++++.++ ++....++.-+-.+| +..++|++++.++
T Consensus 198 tleqa~ea~-----~agaDiI~LDn~~~e~l~~av~-~~~~~~~~~~leaSG-----GI~~~ni~~yA~t 256 (284)
T PRK06096 198 TPKEAIAAL-----RAQPDVLQLDKFSPQQATEIAQ-IAPSLAPHCTLSLAG-----GINLNTLKNYADC 256 (284)
T ss_pred CHHHHHHHH-----HcCCCEEEECCCCHHHHHHHHH-HhhccCCCeEEEEEC-----CCCHHHHHHHHhc
Confidence 455565544 334555556 578888888776 333222233344444 6678888887665
No 145
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=56.77 E-value=79 Score=23.50 Aligned_cols=16 Identities=6% Similarity=-0.157 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhc
Q psy15360 62 KEKLRKIGTQMAKEFG 77 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~ 77 (109)
.++..+.++++++.++
T Consensus 114 ~~~~~~~~~~~i~~ak 129 (273)
T cd07941 114 LEENLAMIRDSVAYLK 129 (273)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 146
>PRK06484 short chain dehydrogenase; Validated
Probab=56.75 E-value=99 Score=24.59 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=54.2
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
.+++..+++. .+...+.+.|.+++-++... .+.++.+.++.+ +....+ +.+++++++.++++.+.+++
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPD-----HHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCc-----eeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4555555442 47777889999988776432 233344434322 222223 46889999999998888776
Q ss_pred ccchhccCCcc-----CCCCChHHHHHHH
Q psy15360 79 SRYIANLGHGI-----YPDMDPEHVQVLI 102 (109)
Q Consensus 79 ~g~Il~~gcgi-----~~~tp~eNi~a~v 102 (109)
...|.+.|-.- ..+.+.+.++.++
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~ 109 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQ 109 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHH
Confidence 55666766411 1245666554443
No 147
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=56.35 E-value=16 Score=27.83 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=29.6
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+.||||+|.++.+++.+. +-..+++.+.+ ..+.+.++.|-+.|
T Consensus 284 ~~Gtpe~v~e~l~~~~~~-Gv~~~~l~~~~----~~~~~~l~lf~~eV 326 (330)
T TIGR03842 284 VLGPAEAHIEKLRELRAL-GVDQFAIYLQH----DDKEETIAAYGRHI 326 (330)
T ss_pred cCCCHHHHHHHHHHHHHc-CCceEEEeCCC----CCHHHHHHHHHHhh
Confidence 469999999999987664 43556666554 45667777665543
No 148
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=55.92 E-value=21 Score=26.18 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCcEEEeec-------chhhhHHHHhccCCceEee-ecccChhhHhhhhcCCccccCCCccccc--ccHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-------GAHYALEELNQTKYDIVGI-DWTIEPSLARSIIKNKTLQGNLDPCALY--ASKEKLRKIGTQMA 73 (109)
Q Consensus 4 ~~pvi~~~~-------g~~~~l~~l~~~g~d~~~i-d~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~e~i~~~~~~~l 73 (109)
++|+++..- |-..+++.++++|++.+.+ |- .+++..+.+. .+-.=|+++..+. .|+++. .+.++
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~-~~~~~g~~~i~~i~P~T~~~~---i~~i~ 149 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL--PPEEAEEFRE-AAKEYGLDLIFLVAPTTPDER---IKKIA 149 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHH-HHHHcCCcEEEEeCCCCCHHH---HHHHH
Confidence 577655433 3356899999999998876 32 2233332221 1223367776543 444332 22333
Q ss_pred HHhccccchh--c--cCCccCCCCChHHHHHHHHHhhhh
Q psy15360 74 KEFGKSRYIA--N--LGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 74 ~~~~~~g~Il--~--~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.. .+||+ + ++-|.... -.+++...++.+|++
T Consensus 150 ~~~--~~~vy~~s~~g~tG~~~~-~~~~~~~~i~~lr~~ 185 (242)
T cd04724 150 ELA--SGFIYYVSRTGVTGARTE-LPDDLKELIKRIRKY 185 (242)
T ss_pred hhC--CCCEEEEeCCCCCCCccC-CChhHHHHHHHHHhc
Confidence 321 33433 3 23332221 245677777777654
No 149
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.85 E-value=72 Score=22.68 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=51.6
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
.++.++++. .+...+.+.|.+++-++-.-+ +.+..+.+. -.+++....+ +.+++.+.+..+++.+..++ .
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP---KAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc---cCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 344555432 477788888999887764321 222222221 1223333223 45788899988888887765 4
Q ss_pred cchhccCCccCC---C-CChHHHHHHHH
Q psy15360 80 RYIANLGHGIYP---D-MDPEHVQVLID 103 (109)
Q Consensus 80 g~Il~~gcgi~~---~-tp~eNi~a~v~ 103 (109)
..|.+.|-.... . ++.+.++.+++
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~ 108 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMD 108 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHh
Confidence 555555532211 1 55565555443
No 150
>PRK08226 short chain dehydrogenase; Provisional
Probab=55.78 E-value=71 Score=22.64 Aligned_cols=70 Identities=7% Similarity=-0.007 Sum_probs=41.6
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+.+.+.+.|.+++-++-.-+..+..+.+. ...+++..... +.+++++++..+++.+.+++ ..+|.+.|-
T Consensus 21 ~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 21 GIARVFARHGANLILLDISPEIEKLADELC--GRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHHCCCEEEEecCCHHHHHHHHHHH--HhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 477888889999887765332222222221 11122322222 46788899988888888766 566666664
No 151
>KOG2811|consensus
Probab=55.63 E-value=25 Score=28.25 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=41.6
Q ss_pred hhhHhhhhcCC--ccccCCCcccc-cccHHHHHHHHHHHHHHhc-----cccchhccCCccCCCCChHHHHH
Q psy15360 37 PSLARSIIKNK--TLQGNLDPCAL-YASKEKLRKIGTQMAKEFG-----KSRYIANLGHGIYPDMDPEHVQV 100 (109)
Q Consensus 37 ~~~~~~~~g~~--~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~-----~~g~Il~~gcgi~~~tp~eNi~a 100 (109)
..+.++...+. .+.| =||..+ .-.++.|-..++++||.++ ..||=-.+=--+||++++||+.-
T Consensus 343 ~~~~~~a~~~~d~~~~~-~~~~~it~eEr~~IG~~cK~iId~GR~~~lk~~Gf~s~Lv~YVp~~VSlENvll 413 (420)
T KOG2811|consen 343 SRTLRDANEGADESIEG-RDAYRITVEEREKIGLKCKRIIDYGRLKWLKKHGFNSELVYYVPPEVSLENVLL 413 (420)
T ss_pred hhhhhhhhccccccccC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhheeecCCccChhHeee
Confidence 34444444432 2222 245555 4567899999999999965 25665555667899999999853
No 152
>PRK07063 short chain dehydrogenase; Provisional
Probab=55.60 E-value=72 Score=22.63 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=52.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|.+++-++-.. ...+..+.+.....-+++..... +.+++++++.++++.+.+++ .
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 88 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGPLD 88 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCCCc
Confidence 444544432 47777889999988776422 12223333321001223333223 46788899999998888776 5
Q ss_pred cchhccCCcc---CCCCChHHHHHH
Q psy15360 80 RYIANLGHGI---YPDMDPEHVQVL 101 (109)
Q Consensus 80 g~Il~~gcgi---~~~tp~eNi~a~ 101 (109)
..|-+.|-.. +..++.+..+.+
T Consensus 89 ~li~~ag~~~~~~~~~~~~~~~~~~ 113 (260)
T PRK07063 89 VLVNNAGINVFADPLAMTDEDWRRC 113 (260)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHH
Confidence 6666666332 124555544443
No 153
>PRK06139 short chain dehydrogenase; Provisional
Probab=55.43 E-value=90 Score=23.72 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=53.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+++.|.+++-++-.- .+.++.+.+. ..-+.+..... +.+++++++.+.++.+.+++ .
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~--~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR--ALGAEVLVVPTDVTDADQVKALATQAASFGGRID 86 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--hcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 445544432 47777889999988665321 1223322221 11111111112 46788999888888777665 5
Q ss_pred cchhccCCccC---CCCChHHHHHHHH
Q psy15360 80 RYIANLGHGIY---PDMDPEHVQVLID 103 (109)
Q Consensus 80 g~Il~~gcgi~---~~tp~eNi~a~v~ 103 (109)
.+|.+.|-... .+++.|..+.+++
T Consensus 87 ~lVnnAG~~~~~~~~~~~~e~~~~~~~ 113 (330)
T PRK06139 87 VWVNNVGVGAVGRFEETPIEAHEQVIQ 113 (330)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 66777765432 3577776655554
No 154
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=55.27 E-value=33 Score=27.14 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=47.7
Q ss_pred CCcEEEe-ecchh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCC--c-----------cccC---CCcccc-ccc
Q psy15360 4 DVPMTIF-AKGAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNK--T-----------LQGN---LDPCAL-YAS 61 (109)
Q Consensus 4 ~~pvi~~-~~g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~--~-----------l~GN---idp~~L-~gt 61 (109)
.+|..+| ++|.. +-+....+.|+.=+.++-.+.. ..+++.+.+. . ...| +||..+ ...
T Consensus 257 ~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~ 336 (357)
T TIGR01520 257 PLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWAYWEGILNYYKNNEDYLQGQLGNPKGPDKPNKKFYDPRVWLREG 336 (357)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHhccccccCccCCcccccCCCcccCCHHHHHHHH
Confidence 3448888 44654 4677778899998888754422 2234444221 2 2244 888755 455
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy15360 62 KEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~~ 78 (109)
.+.+++.+++.|+.++.
T Consensus 337 ~~a~k~~v~~~i~~~gs 353 (357)
T TIGR01520 337 EKSMKARVEKACQELNN 353 (357)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 68899999999988753
No 155
>PLN02276 gibberellin 20-oxidase
Probab=55.21 E-value=24 Score=27.52 Aligned_cols=45 Identities=7% Similarity=0.130 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+++++-.+.++++.+++..-||..=.+|||+ .+-+.++.+++++|
T Consensus 52 ~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~----~~l~~~~~~~~~~F 96 (361)
T PLN02276 52 GDEAATAEAARLVREACLKHGFFQVVNHGVD----AALIRAAHEYMDAF 96 (361)
T ss_pred CChHHHHHHHHHHHHHHHHCcEEEEEcCCCC----HHHHHHHHHHHHHH
Confidence 4556555666667777777788888899985 57788888877764
No 156
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=55.07 E-value=19 Score=24.45 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=38.2
Q ss_pred hhhHhhhhcCC-ccccCCCcc--cccc--cHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 37 PSLARSIIKNK-TLQGNLDPC--ALYA--SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 37 ~~~~~~~~g~~-~l~GNidp~--~L~g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
.....+.++.. ..+|++|-. ++.| +++.+++..++.++. |++-+.|+- |+|..
T Consensus 53 ~~~v~ky~~~ELgt~g~i~~~rlii~G~~~~~~i~~~L~~yI~~-----yVlC~~C~s-PdT~l 110 (133)
T TIGR00311 53 EQHLLKYLLKELGTAGNLEGGRLILQGKFTHFLLNERIEDYVRK-----YVICRECNR-PDTRI 110 (133)
T ss_pred HHHHHHHHHHHhCCCceecCCEEEEEeecCHHHHHHHHHHHHhh-----eEECCCCCC-CCcEE
Confidence 33444556666 788998875 3456 678899999999876 999999997 45543
No 157
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=55.00 E-value=36 Score=25.51 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=39.0
Q ss_pred CCCcEEEeecchh-hhHHHHhccCC--ceEeeecccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHH
Q psy15360 3 NDVPMTIFAKGAH-YALEELNQTKY--DIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQ 71 (109)
Q Consensus 3 ~~~pvi~~~~g~~-~~l~~l~~~g~--d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~ 71 (109)
-+.|+++|+.+.. ..++.|.+.+. .++---+.=+.++|++.+.-.... .|.+.+.+-..+++++-++.
T Consensus 124 ~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~G~yi-sisG~itfk~a~~~~ev~~~ 194 (256)
T COG0084 124 LNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDLGFYI-SISGIVTFKNAEKLREVARE 194 (256)
T ss_pred cCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCeEE-EECceeecCCcHHHHHHHHh
Confidence 3689999999986 48888888764 333112223677787777443111 23333344444555555553
No 158
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.99 E-value=65 Score=23.91 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCcEEEeec-------chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccccc--ccH-HHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-------GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY--ASK-EKLRKIGTQMA 73 (109)
Q Consensus 4 ~~pvi~~~~-------g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~-e~i~~~~~~~l 73 (109)
++|++|..- |...+++.++++|++.+-+-. ..+++..+.+. .+-.=++++..+. .|+ +.++ .++
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD-lp~ee~~~~~~-~~~~~gl~~i~lv~P~T~~eri~----~i~ 160 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD-LPLEESGDLVE-AAKKHGVKPIFLVAPNADDERLK----QIA 160 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECC-CChHHHHHHHH-HHHHCCCcEEEEECCCCCHHHHH----HHH
Confidence 678765544 234588899999999875521 23344433331 1223377886543 443 3333 333
Q ss_pred HHhccccchhccCCccCCC--CChHHHHHHHHHhhhh
Q psy15360 74 KEFGKSRYIANLGHGIYPD--MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 74 ~~~~~~g~Il~~gcgi~~~--tp~eNi~a~v~a~~~~ 108 (109)
+...+--|+++.- |+.-. .-.+.+...++.+|++
T Consensus 161 ~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 161 EKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred HhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhh
Confidence 3322123444542 44432 1234467777776654
No 159
>PRK08643 acetoin reductase; Validated
Probab=54.61 E-value=74 Score=22.46 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=44.3
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++.++++. .+...+.+.|.+++-++...+ ..++.+.+.. .-.++...-. +.+++.+++..+++.+.+++ .
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 445555442 477788889999887775322 2222222221 1112212122 46788899988888887765 5
Q ss_pred cchhccC
Q psy15360 80 RYIANLG 86 (109)
Q Consensus 80 g~Il~~g 86 (109)
..|.+.|
T Consensus 82 ~vi~~ag 88 (256)
T PRK08643 82 VVVNNAG 88 (256)
T ss_pred EEEECCC
Confidence 5555554
No 160
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.30 E-value=16 Score=27.05 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccC-CCC----ChH---HHHHHHHHhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIY-PDM----DPE---HVQVLIDAIH 106 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~-~~t----p~e---Ni~a~v~a~~ 106 (109)
+.+++.+.++++++++. |..|+-.|.+-. |++ +.| .+..++++++
T Consensus 20 ~~~~~~~~~~a~~~~~~---GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~ 72 (258)
T cd00423 20 FLSLDKALEHARRMVEE---GADIIDIGGESTRPGAEPVSVEEELERVIPVLRALA 72 (258)
T ss_pred cCCHHHHHHHHHHHHHC---CCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 35788999999999887 778888887765 333 444 4455555554
No 161
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=54.23 E-value=37 Score=22.76 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.4
Q ss_pred ChHHHHHHHHH
Q psy15360 94 DPEHVQVLIDA 104 (109)
Q Consensus 94 p~eNi~a~v~a 104 (109)
..+.++.|.++
T Consensus 99 ~~~~~~~l~~~ 109 (216)
T smart00729 99 TEELLEALKEA 109 (216)
T ss_pred CHHHHHHHHHc
Confidence 34555555443
No 162
>PRK08185 hypothetical protein; Provisional
Probab=54.06 E-value=26 Score=26.70 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccChh--h-HhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPS--L-ARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~--~-~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|+..|.+ |.. +-+....+.|+.=+.++-.+... + .++.+... -..+||.-+ ....+.+++.+++.|+.++
T Consensus 198 ~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~i~~~g 275 (283)
T PRK08185 198 DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDN--PSLYEPNQIYPSAIEAAKEVVRHKMDLFN 275 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhC--cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999955 443 46677778999888887543222 1 23333211 124787644 3556889999999999876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 276 s 276 (283)
T PRK08185 276 S 276 (283)
T ss_pred C
Confidence 3
No 163
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=54.00 E-value=11 Score=29.28 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+++++-.+.++++.+++..-||..=.+|||+. +-+..+.+.+++|
T Consensus 59 ~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~----~l~~~~~~~~~~F 103 (360)
T PLN03178 59 DDEVVREACVEAVRAAAAEWGVMHLVGHGIPA----DLLDRVRKAGEAF 103 (360)
T ss_pred CChhhHHHHHHHHHHHHHHCCEEEEEcCCCCH----HHHHHHHHHHHHH
Confidence 44444556667777777777888888999875 4577777777654
No 164
>PRK06128 oxidoreductase; Provisional
Probab=53.79 E-value=87 Score=23.04 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=50.2
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc---ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI---EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~---d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
+++..+++. .+...+.+.|.+++-..-.- +..+..+.+.. ....+..... +.+++++++.+.++.+.+++
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 134 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA--EGRKAVALPGDLKDEAFCRQLVERAVKELGG 134 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 455555432 47778888999886443211 12222222211 0011111112 35788899988888888776
Q ss_pred -ccchhccCCccC----CCCChHHHHHHHH
Q psy15360 79 -SRYIANLGHGIY----PDMDPEHVQVLID 103 (109)
Q Consensus 79 -~g~Il~~gcgi~----~~tp~eNi~a~v~ 103 (109)
...|.+.|-... .+.+.|..+.+++
T Consensus 135 iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~ 164 (300)
T PRK06128 135 LDILVNIAGKQTAVKDIADITTEQFDATFK 164 (300)
T ss_pred CCEEEECCcccCCCCChhhCCHHHHHHHHH
Confidence 566666664321 2456665554443
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.28 E-value=93 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=19.0
Q ss_pred CcEEEeecch------hhhHHHHhccCCceEee
Q psy15360 5 VPMTIFAKGA------HYALEELNQTKYDIVGI 31 (109)
Q Consensus 5 ~pvi~~~~g~------~~~l~~l~~~g~d~~~i 31 (109)
.-+-|+..|- ..++..+.+.|+|++.+
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl 45 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIEL 45 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4456667762 24677788899999866
No 166
>TIGR03621 F420_MSMEG_2516 probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis.
Probab=53.23 E-value=26 Score=26.50 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.2
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhcc
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANL 85 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~ 85 (109)
++.|||++|.++++++.+..+-..++|.+
T Consensus 253 ~~~Gtp~~vae~l~~~~~~~G~~~~~l~~ 281 (295)
T TIGR03621 253 VLIGSPEQIAERLRERRERYGVSYFTVLD 281 (295)
T ss_pred ccccCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 45799999999999998865435677764
No 167
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.21 E-value=30 Score=26.15 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
..+++++++.++. +....+.--|.++| +..+||++++.++
T Consensus 210 n~~~e~l~~~v~~-~~~~~~~~~ieAsG-----gIt~~ni~~ya~~ 249 (273)
T PRK05848 210 NMSVEEIKEVVAY-RNANYPHVLLEASG-----NITLENINAYAKS 249 (273)
T ss_pred CCCHHHHHHHHHH-hhccCCCeEEEEEC-----CCCHHHHHHHHHc
Confidence 3466666666653 22211222344444 3466666666554
No 168
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=53.07 E-value=1.2e+02 Score=25.14 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=48.8
Q ss_pred hHHHHhccCCceEee-ecccCh---hhHhhhhcCC--ccccCC----CcccccccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 17 ALEELNQTKYDIVGI-DWTIEP---SLARSIIKNK--TLQGNL----DPCALYASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 17 ~l~~l~~~g~d~~~i-d~~~d~---~~~~~~~g~~--~l~GNi----dp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
+++...++|+|+|.+ |...|+ ..+.+..... ..+|.| +| .-|++.+.+.++++.+. |-.+++..
T Consensus 102 fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp---~~t~e~~~~~a~~l~~~---Gad~I~Ik 175 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSP---IHTVEGFVEQAKRLLDM---GADSICIK 175 (499)
T ss_pred HHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCC---CCCHHHHHHHHHHHHHc---CCCEEEeC
Confidence 566667899999977 333333 3333333222 344554 44 24888888888888776 44555554
Q ss_pred CccCCCCChHHHHHHHHHhhh
Q psy15360 87 HGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 87 cgi~~~tp~eNi~a~v~a~~~ 107 (109)
-... -..|+.+..++.++++
T Consensus 176 DtaG-ll~P~~~~~LV~~Lk~ 195 (499)
T PRK12330 176 DMAA-LLKPQPAYDIVKGIKE 195 (499)
T ss_pred CCcc-CCCHHHHHHHHHHHHH
Confidence 3333 3445567777776654
No 169
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=53.03 E-value=36 Score=26.47 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=49.0
Q ss_pred HHHHhccCCceE---eeecccChhhHhhhhcCC--ccccCCC-c-ccc-cccH-----HHHHHHHHHHHHHhcc--ccch
Q psy15360 18 LEELNQTKYDIV---GIDWTIEPSLARSIIKNK--TLQGNLD-P-CAL-YASK-----EKLRKIGTQMAKEFGK--SRYI 82 (109)
Q Consensus 18 l~~l~~~g~d~~---~id~~~d~~~~~~~~g~~--~l~GNid-p-~~L-~gt~-----e~i~~~~~~~l~~~~~--~g~I 82 (109)
++.|+++|+++| ++|...|-.+..+.+.+. -+.=.++ | .-+ ..+| .+..++...+++.+.+ .-.=
T Consensus 59 i~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~Lg 138 (314)
T PF03198_consen 59 IPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLG 138 (314)
T ss_dssp HHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TTS------HHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCCCCcCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 467889999987 567777888877777654 2222233 2 233 2333 4677888899999875 2234
Q ss_pred hccCCccCCCCChHHHHHHHHHh
Q psy15360 83 ANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 83 l~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
|..|.++.-+..-.+.-++++|+
T Consensus 139 Ff~GNEVin~~~~t~aap~vKAa 161 (314)
T PF03198_consen 139 FFAGNEVINDASNTNAAPYVKAA 161 (314)
T ss_dssp EEEEESSS-STT-GGGHHHHHHH
T ss_pred EEecceeecCCCCcccHHHHHHH
Confidence 66788887665555555555544
No 170
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=52.93 E-value=27 Score=26.50 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=36.7
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+++++++.+ ..+.|-.+| ..+||++++.++.+ +...++.-+-.+| +..++|+.++.++.
T Consensus 197 tleea~ea~-----~~GaDiI~lDn~~~e~l~~~v~~l-~~~~~~~~leasG-----GI~~~ni~~ya~~G 256 (277)
T TIGR01334 197 TIEQALTVL-----QASPDILQLDKFTPQQLHHLHERL-KFFDHIPTLAAAG-----GINPENIADYIEAG 256 (277)
T ss_pred CHHHHHHHH-----HcCcCEEEECCCCHHHHHHHHHHH-hccCCCEEEEEEC-----CCCHHHHHHHHhcC
Confidence 455555533 445676666 67899999988744 3212233344444 67788988887653
No 171
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=52.90 E-value=33 Score=26.09 Aligned_cols=96 Identities=7% Similarity=0.055 Sum_probs=56.9
Q ss_pred CcEEEe-ecchh--hhHHHHhccCCceEeeecccChhhH------hhhhcCC-cccc--CCCcccccccHHHHHHHHHHH
Q psy15360 5 VPMTIF-AKGAH--YALEELNQTKYDIVGIDWTIEPSLA------RSIIKNK-TLQG--NLDPCALYASKEKLRKIGTQM 72 (109)
Q Consensus 5 ~pvi~~-~~g~~--~~l~~l~~~g~d~~~id~~~d~~~~------~~~~g~~-~l~G--Nidp~~L~gt~e~i~~~~~~~ 72 (109)
..|+.. ..|.. .+++.|...|.+.+. -+++.+- .+.++.- -+-. |+|-.++.-+.+.+.+.+++|
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~---~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~ 83 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVG---GVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEA 83 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEE---EECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHH
Confidence 334333 55653 477888888887332 2344321 1122111 1222 477777777888999999999
Q ss_pred HHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 73 AKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 73 l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
.+..-+.-.|++.|= +++.-+++.+.+++++
T Consensus 84 ~~~Gvk~avIis~Gf------~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 84 IDAGIELIVCITEGI------PVHDMLKVKRYMEESG 114 (286)
T ss_pred HHCCCCEEEEECCCC------CHHHHHHHHHHHHHcC
Confidence 886434556777662 3344578888888764
No 172
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=52.88 E-value=27 Score=27.51 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=37.9
Q ss_pred hHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhcc
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~~ 78 (109)
-+....++|+.=+.++..+..+ ..++.+.+. -.++||..++ ...+.+++.+++.|+.++.
T Consensus 260 ~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs 323 (347)
T TIGR01521 260 EIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQN--PSEFDPRKFLKPTVEAMRDVCIARYEAFGT 323 (347)
T ss_pred HHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555667899888887543222 223333211 1248887554 5568899999999999874
No 173
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=52.85 E-value=23 Score=28.24 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=46.0
Q ss_pred hHHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+..+....+|..-+..|+ |+..|.+.+.++.+.=++...+.-+|.+..++..+ -+++.+.+ |-.|.++||+.
T Consensus 251 pv~~~~g~~Id~~~IGSCTngr~eDl~~aA~iLkG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~pgCg~ 330 (380)
T cd01585 251 PVREVAGIKVDQVAIGSCTNSSYEDLMTVAAILKGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILESACGP 330 (380)
T ss_pred EhhhhCCceEEEEEEecCCCCCcHHHHHHHHHHcCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCcee
Confidence 3455666677777777766 77888888877644334543333478555444443 35555555 66788999985
No 174
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=52.78 E-value=80 Score=22.32 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHhccCCceEeee--cc----cChhhHhhhhcCC-ccccCCCcc-cc---cccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 18 LEELNQTKYDIVGID--WT----IEPSLARSIIKNK-TLQGNLDPC-AL---YASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 18 l~~l~~~g~d~~~id--~~----~d~~~~~~~~g~~-~l~GNidp~-~L---~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.++..+.|+|.+.+- +. -+..+..+.+..- -...++.-. ++ .-+++++.+.++-+++. |-.++=++
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~---GaD~IKTs 151 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA---GADFIKTS 151 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh---CCCEEEcC
Confidence 445567899988662 11 1223333333321 122233321 12 13678999999988887 33334333
Q ss_pred Ccc-CCCCChHHHHHHHHHhh
Q psy15360 87 HGI-YPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 87 cgi-~~~tp~eNi~a~v~a~~ 106 (109)
=|- +.++.++.++.|-+.++
T Consensus 152 TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHhC
Confidence 333 46899999999988875
No 175
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=52.62 E-value=44 Score=23.02 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=49.5
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC------ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK------TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~------~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.....|.+.|..++-+....+- .+.+|.+ -+-..+|-.-+|-.+|.+-+.+++.++.. .+.+.+-+|
T Consensus 34 ~V~kyL~~~GY~ViPVNP~~~~---~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~~-~kv~W~QlG 106 (140)
T COG1832 34 RVAKYLQQKGYRVIPVNPKLAG---EEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALEKG-AKVVWLQLG 106 (140)
T ss_pred HHHHHHHHCCCEEEeeCcccch---HHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHhhC-CCeEEEecC
Confidence 4788899999999988876543 3444443 35678888777888999999999999873 345555554
No 176
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=52.53 E-value=82 Score=22.36 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=52.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-cc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
+++..+++. .+...+.+.|.+++.++.. ...+..+.+.. +...+...-. +.+.+++++.++++.+.+++ ..
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~ 88 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGINIV-EPTETIEQVTA--LGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI 88 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEecCc-chHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 445544432 4777788899998876542 22232222211 1111111122 36788899988888888776 56
Q ss_pred chhccCCcc---CCCCChHHHHHHHH
Q psy15360 81 YIANLGHGI---YPDMDPEHVQVLID 103 (109)
Q Consensus 81 ~Il~~gcgi---~~~tp~eNi~a~v~ 103 (109)
+|.+.|-.. ..+++.|++..+++
T Consensus 89 li~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (253)
T PRK08993 89 LVNNAGLIRREDAIEFSEKDWDDVMN 114 (253)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHh
Confidence 666666422 22456676655543
No 177
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=52.45 E-value=12 Score=27.52 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=29.6
Q ss_pred ecccChhhHhhhhcCCccccCCCcccccccHHHHHHH
Q psy15360 32 DWTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKI 68 (109)
Q Consensus 32 d~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~ 68 (109)
.|.-....-++.||...+.-||||..|+-|+|++++.
T Consensus 54 ~W~~t~ky~Rk~fGRYG~aSgV~P~~lwPt~eelee~ 90 (217)
T PF10147_consen 54 SWHKTVKYKRKLFGRYGLASGVDPGILWPTPEELEEQ 90 (217)
T ss_pred hhhhhHHHHHHHHHhhhhhcCCChhhhCCCHHHHHHH
Confidence 4555667788889866677999999999999888874
No 178
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=52.38 E-value=25 Score=28.32 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=45.7
Q ss_pred hHHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+..+....+|..-+..|+ |+..|.+.+.++.+.-++...+.-||.+...+..+ -+++.+.. |..|..+||+.
T Consensus 278 ~v~~~~g~~id~~~IGSCTngr~~Dl~~aA~il~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~ 357 (412)
T TIGR01343 278 PVSEVEGIEVDQVFIGSCTNGRIEDLRVAAKILKGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGP 357 (412)
T ss_pred EhHHhCCCeeeEEEEecCCCCChHHHHHHHHHHcCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCcccc
Confidence 3455666777888787776 67778888876644334433223478655444444 35555555 67788999984
No 179
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=52.12 E-value=80 Score=22.13 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCC-CChHHHHHHHHHh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD-MDPEHVQVLIDAI 105 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~-tp~eNi~a~v~a~ 105 (109)
+++.+.+.. +.....+..+++|=.-.|+ -..+.+++|++++
T Consensus 162 ~~~Nv~~~i----~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~~ 203 (203)
T cd00405 162 TPDNVAEAI----RLVRPYGVDVSSGVETSPGIKDPEKIRAFIEAA 203 (203)
T ss_pred ChHHHHHHH----HhcCCCEEEcCCcccCCCCCcCHHHHHHHHHhC
Confidence 455554443 3322345666666554444 7788888888763
No 180
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=52.04 E-value=82 Score=23.02 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.7
Q ss_pred hhHHHHhccCCceEee
Q psy15360 16 YALEELNQTKYDIVGI 31 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~i 31 (109)
+.++.+++.|++.+.+
T Consensus 20 e~l~~~~~~G~~~VEl 35 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEM 35 (279)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5888889999999966
No 181
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=51.85 E-value=84 Score=22.27 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=44.9
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc---
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI--- 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi--- 89 (109)
.+...+.+.|..++.++-..+ +...++.+. ....++..... +.+++.+++.+.++.+..++ ...|.+.|...
T Consensus 27 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~ 104 (259)
T PRK08213 27 QIAEALGEAGARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEETLERFGHVDILVNNAGATWGAP 104 (259)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 477778888999887764321 122222221 11112222112 35678898888888887665 56666666432
Q ss_pred CCCCChHHHH
Q psy15360 90 YPDMDPEHVQ 99 (109)
Q Consensus 90 ~~~tp~eNi~ 99 (109)
..+.|.+.++
T Consensus 105 ~~~~~~~~~~ 114 (259)
T PRK08213 105 AEDHPVEAWD 114 (259)
T ss_pred hhhCCHHHHH
Confidence 2245555443
No 182
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.69 E-value=46 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+||.|.+. ..+ ..++.+.=+|+|=..+-.=.++.|++|++++|+.
T Consensus 162 ~peNV~~a-~~~--~~~p~gVDvsSGVE~~G~KD~~ki~~f~~~v~~~ 206 (207)
T PRK13958 162 NSENIQTV-EQL--KLSHQGYDIASGIETNGRKDINKMTAIVNIVKGD 206 (207)
T ss_pred CHHHHHHH-Hhc--CCCCCEEEcccccCCCCCCCHHHHHHHHHHHHhc
Confidence 56777663 211 2234344468887765347899999999999875
No 183
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=50.94 E-value=53 Score=23.18 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred hhHHHHhccCCceEeeecccC-----hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHh-cc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-----PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEF-GK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-----~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~-~~-~g~Il~~gc 87 (109)
.+-..+.+.|++++-.+.... +.++.+.++.+. ..+ +.+++++++.+.++.+.+ ++ ...|.+.|-
T Consensus 11 aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 11 AIARALAEEGANVILTDRNEEKLADALEELAKEYGAEV-------IQCDLSDEESVEALFDEAVERFGGRIDILVNNAGI 83 (241)
T ss_dssp HHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEE-------EESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEES
T ss_pred HHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCce-------EeecCcchHHHHHHHHHHHhhcCCCeEEEEecccc
Confidence 366778899999987775432 233333333211 122 357899999999999998 66 556666664
Q ss_pred ccC-------CCCChHHHHHHHH
Q psy15360 88 GIY-------PDMDPEHVQVLID 103 (109)
Q Consensus 88 gi~-------~~tp~eNi~a~v~ 103 (109)
..+ .+++.|.+...++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ 106 (241)
T PF13561_consen 84 SPPSNVEKPLLDLSEEDWDKTFD 106 (241)
T ss_dssp CTGGGTSSSGGGSHHHHHHHHHH
T ss_pred cccccCCCChHhCCHHHHHHHHH
Confidence 443 1345566655544
No 184
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=50.85 E-value=23 Score=26.16 Aligned_cols=12 Identities=0% Similarity=0.044 Sum_probs=5.7
Q ss_pred cHHHHHHHHHHH
Q psy15360 61 SKEKLRKIGTQM 72 (109)
Q Consensus 61 t~e~i~~~~~~~ 72 (109)
++++|.++++++
T Consensus 63 ~~eei~~~~~~~ 74 (296)
T TIGR00433 63 KVDEVLEEARKA 74 (296)
T ss_pred CHHHHHHHHHHH
Confidence 344555554443
No 185
>PRK05876 short chain dehydrogenase; Provisional
Probab=50.62 E-value=96 Score=22.58 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=47.0
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc---
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI--- 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi--- 89 (109)
.+...+.+.|.+++-.+-.. .+.++.+.+.. ..+.+....+ +.+++++++.+.++.+.+++ ...|-+.|-..
T Consensus 21 ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~ 98 (275)
T PRK05876 21 ATGTEFARRGARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGP 98 (275)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 47778889999988666322 12222222211 1112222223 46788999988888887765 55555555322
Q ss_pred CCCCChHHHHHH
Q psy15360 90 YPDMDPEHVQVL 101 (109)
Q Consensus 90 ~~~tp~eNi~a~ 101 (109)
..+.+.+.++.+
T Consensus 99 ~~~~~~~~~~~~ 110 (275)
T PRK05876 99 IVEMTHDDWRWV 110 (275)
T ss_pred cccCCHHHHHHH
Confidence 235666655443
No 186
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.34 E-value=25 Score=26.97 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 52 NLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 52 Nidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+.|-.+| ..+||++++.++ ++.. ...+-++| +..++|+.++.++
T Consensus 217 gaDiImLDnmspe~l~~av~-~~~~---~~~leaSG-----GI~~~ni~~yA~t 261 (290)
T PRK06559 217 GADIIMLDNMSLEQIEQAIT-LIAG---RSRIECSG-----NIDMTTISRFRGL 261 (290)
T ss_pred CCCEEEECCCCHHHHHHHHH-HhcC---ceEEEEEC-----CCCHHHHHHHHhc
Confidence 4555555 567777777665 2221 23344444 5666777666544
No 187
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.20 E-value=93 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=16.1
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeee
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGID 32 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id 32 (109)
.++..++.+....++.+.++|++.+.+-
T Consensus 67 ~~~~~l~~~~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 67 VKLQALVRNREKGIERALEAGVDEVRIF 94 (265)
T ss_pred cEEEEEccCchhhHHHHHhCCcCEEEEE
Confidence 3444444443446666777777776553
No 188
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.19 E-value=55 Score=26.07 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCCCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccC-CCcccccccHHHHHHHHHHHHHHhcccc
Q psy15360 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGN-LDPCALYASKEKLRKIGTQMAKEFGKSR 80 (109)
Q Consensus 2 ~~~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GN-idp~~L~gt~e~i~~~~~~~l~~~~~~g 80 (109)
+.++|+-.|.-+... +....+.|++.+......|-+-++....+. .|- + |.++.++.-++++...+-.+.+.+.|
T Consensus 231 ~~g~~v~~HA~~~~g-~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~--~g~~~-~~l~p~~~~~l~e~~~~~~~~l~~~G 306 (406)
T COG1228 231 KAGIPVKAHAHGADG-IKLAIRLGAKSAEHGTLLDHETAALLAEKG--AGTPV-PVLLPRTKFELRELDYKPARKLIDAG 306 (406)
T ss_pred HCCCceEEEecccch-HHHHHHhCcceehhhhhcCHhHHHHHhhcc--CCCcc-ccccchhhhhhhcccchhHHHHHHCC
Confidence 468899999888764 333556777555333333333333322211 221 4 44444554455554333333333333
Q ss_pred chhccCCccCCCC-ChHHHHHHHHHh
Q psy15360 81 YIANLGHGIYPDM-DPEHVQVLIDAI 105 (109)
Q Consensus 81 ~Il~~gcgi~~~t-p~eNi~a~v~a~ 105 (109)
.-++.|.+.+|.+ ...+...|.=++
T Consensus 307 V~vai~TD~~~~~~~~~l~~~m~l~~ 332 (406)
T COG1228 307 VKVAIGTDHNPGTSHGSLALEMALAV 332 (406)
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHH
Confidence 3344444444444 344444444443
No 189
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=50.09 E-value=1.2e+02 Score=23.46 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=47.9
Q ss_pred HHHhccCCceEeeecc-c------ChhhHhhhhcCCcccc--CCC---cccccccHHHHHHHHHHHHHHhcc-ccchhcc
Q psy15360 19 EELNQTKYDIVGIDWT-I------EPSLARSIIKNKTLQG--NLD---PCALYASKEKLRKIGTQMAKEFGK-SRYIANL 85 (109)
Q Consensus 19 ~~l~~~g~d~~~id~~-~------d~~~~~~~~g~~~l~G--Nid---p~~L~gt~e~i~~~~~~~l~~~~~-~g~Il~~ 85 (109)
..+...|+..+- |+. . .+.++.+..|-+.+.| .+| |..+..+..+..++++++++.... +..-.+.
T Consensus 97 ~e~l~~GvTtv~-d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~ 175 (401)
T TIGR02967 97 DELLRNGTTTAL-VFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIERWHGKGRLLYAV 175 (401)
T ss_pred HHHHhCCCcEEE-eccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEEE
Confidence 346678887763 221 1 1345566666552222 223 222223455666677777776433 2221221
Q ss_pred C-CccCCCCChHHHHHHHHHhhhh
Q psy15360 86 G-HGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 86 g-cgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+ |. ++..+.|-++++++.++++
T Consensus 176 ~~~~-~~~~s~e~l~~~~~~A~~~ 198 (401)
T TIGR02967 176 TPRF-APTSSPEQLAAAGELAKEY 198 (401)
T ss_pred ECCc-CCcCcHHHHHHHHHHHHhC
Confidence 1 33 3456679999999999886
No 190
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=50.07 E-value=21 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 62 KEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
.++|.+..++.++.+.+ +.|++-.|-|-+.-.|.|.++.+++.+++
T Consensus 59 ~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~~~i~~ 105 (302)
T TIGR01212 59 RIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMYEQALS 105 (302)
T ss_pred CCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHHHHHhC
Confidence 34555555555555543 55666666666666777777777776654
No 191
>PLN02363 phosphoribosylanthranilate isomerase
Probab=49.61 E-value=36 Score=25.44 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCC--ChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDM--DPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~t--p~eNi~a~v~a~~~~ 108 (109)
+||.|.+..+ ..++-|.=+|+|=...|+. .++.|++|++++++.
T Consensus 209 ~peNV~~ai~----~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~~ 254 (256)
T PLN02363 209 TPENVHEAVS----LLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKSV 254 (256)
T ss_pred CHHHHHHHHH----hcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHhh
Confidence 6677766653 4455445568888887874 899999999999864
No 192
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.29 E-value=19 Score=25.35 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=32.4
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC--ccccCCCcc
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDPC 56 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~--~l~GNidp~ 56 (109)
.-++.|..||+|.|-+-..+.++.+-+-+++- ..|.-.+|.
T Consensus 116 Dql~~M~RcGFDaFav~~~~~~~~l~~~l~~~~~~Yq~~a~p~ 158 (167)
T COG3749 116 DQLPFMLRCGFDAFAVRNDVAIERLLEGLGGISVYYQPAADPR 158 (167)
T ss_pred hhhHHHHHcCCceeeecCcccHHHHhhcccCcceeecCCCCCc
Confidence 35677999999999999888888887777765 457777763
No 193
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=49.27 E-value=27 Score=27.49 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=44.2
Q ss_pred eEeeecccCh-hhHhhhhcCC-ccccCCCcc--cccccHHHHHHHHHHHHHHhccccchhccCCccCC
Q psy15360 28 IVGIDWTIEP-SLARSIIKNK-TLQGNLDPC--ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP 91 (109)
Q Consensus 28 ~~~id~~~d~-~~~~~~~g~~-~l~GNidp~--~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~ 91 (109)
++|++.-.++ .|..+++... .+.=.+++. ..+-..++++.+++++.+. |.||-.|||...
T Consensus 189 mvHigePp~~~dEvlerL~~GDIitHcfngkpn~~l~~dg~vr~~vrra~er----GV~fD~ghG~as 252 (386)
T COG3964 189 MVHIGEPPVLMDEVLERLRRGDIITHCFNGKPNTILTDDGVVRAEVRRARER----GVIFDAGHGRAS 252 (386)
T ss_pred EEecCCCCccHHHHHHhccCCceeeeeccCCCCCccccchhHHHHHHHHHhc----ceEEEccCCcce
Confidence 5788876665 8888888776 676666653 3444557899999988774 788999988653
No 194
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=49.17 E-value=44 Score=26.28 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=46.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccC--hhh-HhhhhcC-C-ccc--------------cCCCcccc-ccc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIE--PSL-ARSIIKN-K-TLQ--------------GNLDPCAL-YAS 61 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d--~~~-~~~~~g~-~-~l~--------------GNidp~~L-~gt 61 (109)
++|..+|.+ |.. +.+....+.|+.=+.++-.+. ..+ .++.+.. . .|| ..+||..+ ...
T Consensus 242 ~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~ 321 (340)
T cd00453 242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAG 321 (340)
T ss_pred CCceEEeCCCCCCHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHhChhhhhhhccCcccccCCccccCCHHHHHHHH
Confidence 688888844 554 477778889998888874332 222 2333321 2 455 45777644 345
Q ss_pred HHHHHHHHHHHHHHhc
Q psy15360 62 KEKLRKIGTQMAKEFG 77 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~ 77 (109)
.+.+++.+++.++.++
T Consensus 322 ~~~~~~~v~~~i~~~~ 337 (340)
T cd00453 322 QTSMIARLEKAFQELN 337 (340)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5778888888887654
No 195
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=48.95 E-value=44 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=30.0
Q ss_pred CcEEEeecchh-hhHHHHhccCCceEeeecccChhhHhh
Q psy15360 5 VPMTIFAKGAH-YALEELNQTKYDIVGIDWTIEPSLARS 42 (109)
Q Consensus 5 ~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~ 42 (109)
..|+.+.+|.. .++..|.+.|+++.-+.+..+..+++.
T Consensus 241 ~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~ 279 (415)
T PLN02771 241 YHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALK 279 (415)
T ss_pred CEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhh
Confidence 35788888875 699999999999888888777776653
No 196
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=48.55 E-value=95 Score=21.93 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=45.7
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|..++.++-..+ ..+..+.+.+ .-+.+..... +.+++++++..+++.+.+++ ...|.+.|...+
T Consensus 25 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~ 102 (255)
T PRK07523 25 ALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--QGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTP 102 (255)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 477778889999887664321 1222222211 1112222222 46788899988888887766 566677665432
Q ss_pred -CCCChHHHH
Q psy15360 91 -PDMDPEHVQ 99 (109)
Q Consensus 91 -~~tp~eNi~ 99 (109)
.+.+.+.++
T Consensus 103 ~~~~~~~~~~ 112 (255)
T PRK07523 103 LEDFPADAFE 112 (255)
T ss_pred hhhCCHHHHH
Confidence 234555444
No 197
>KOG4013|consensus
Probab=47.97 E-value=26 Score=25.81 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=29.5
Q ss_pred hhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHH
Q psy15360 43 IIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLID 103 (109)
Q Consensus 43 ~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~ 103 (109)
.+|=+ +|.-+.+|..|-|- .-.++++++.+ +.++..+||||- ..|++.+++
T Consensus 148 ~lGF~rvLtSG~~psAldGv-----~~i~~lie~hk-g~i~VmpG~Gi~----~sNl~~ile 199 (255)
T KOG4013|consen 148 DLGFKRVLTSGQEPSALDGV-----YIIRELIELHK-GKIDVMPGCGIN----SSNLANILE 199 (255)
T ss_pred HhhHHHHhhcCCCcccccch-----HHHHHHHHHhc-CCEEEecCCCcc----hHHHHHHHh
Confidence 44445 55666666544332 12355666633 789999999985 234444443
No 198
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.58 E-value=63 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=28.5
Q ss_pred hhhHHHHhccCCceEeeeccc-------C-hhhHhhhhcCC-ccccCCCc
Q psy15360 15 HYALEELNQTKYDIVGIDWTI-------E-PSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 15 ~~~l~~l~~~g~d~~~id~~~-------d-~~~~~~~~g~~-~l~GNidp 55 (109)
..++..|.+.|+|++-+|-.. | +++.|+.+++. ++.||+-+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t 276 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVS 276 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 358888999999999998432 2 45566666655 66676543
No 199
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=47.34 E-value=91 Score=22.28 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=44.2
Q ss_pred HhccCCceEeeecccChhhHhhhhcC---C-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCC-CCCh
Q psy15360 21 LNQTKYDIVGIDWTIEPSLARSIIKN---K-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP-DMDP 95 (109)
Q Consensus 21 l~~~g~d~~~id~~~d~~~~~~~~g~---~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~-~tp~ 95 (109)
..+.|+|.+.+.+..+++..++.... . .+.|++.. .|+++..+.++++++.. ..-++.|-.+.. .-|.
T Consensus 152 a~~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~----~~~~~~l~~~~~~~~~G---a~gv~vg~~i~~~~dp~ 224 (235)
T cd00958 152 GAELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKK----DSEEEFLKMVYDAMEAG---AAGVAVGRNIFQRPDPV 224 (235)
T ss_pred HHHHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCC----CCHHHHHHHHHHHHHcC---CcEEEechhhhcCCCHH
Confidence 55789999999887776666554431 1 11232211 25666777788888762 222344444432 3456
Q ss_pred HHHHHHHHHh
Q psy15360 96 EHVQVLIDAI 105 (109)
Q Consensus 96 eNi~a~v~a~ 105 (109)
+-++++.+.+
T Consensus 225 ~~~~~~~~~~ 234 (235)
T cd00958 225 AMLRAISAVV 234 (235)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 200
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.31 E-value=96 Score=21.64 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=46.4
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc---
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI--- 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi--- 89 (109)
.+...+.+.|.+++.++-.- +..+..+.+. ..-+++..... +.+++.+.+..+++.+.+++ ...|.+.|-..
T Consensus 21 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~ 98 (241)
T PRK07454 21 ATALAFAKAGWDLALVARSQDALEALAAELR--STGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAYTGP 98 (241)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccCCCc
Confidence 47888888999988776422 1222222221 11123333222 35788898888888887765 44455554221
Q ss_pred CCCCChHHHHHHH
Q psy15360 90 YPDMDPEHVQVLI 102 (109)
Q Consensus 90 ~~~tp~eNi~a~v 102 (109)
..+++.+.++.++
T Consensus 99 ~~~~~~~~~~~~~ 111 (241)
T PRK07454 99 LLEMPLSDWQWVI 111 (241)
T ss_pred hhhCCHHHHHHHH
Confidence 1244566655443
No 201
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=47.18 E-value=1e+02 Score=22.05 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=43.5
Q ss_pred cEEEeecch----hhhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGA----HYALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~----~~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
.+++..+++ ..+...+.+.|.+++-++...+ ..+..+.+. ..-+++..... +.+++++.+..+++.+.+++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 88 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK--AAGGEALAVKADVLDKESLEQARQQILEDFGPC 88 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 345555543 2477778889999887765321 122222221 11112222222 35678888888888877765
Q ss_pred ccchhccC
Q psy15360 79 SRYIANLG 86 (109)
Q Consensus 79 ~g~Il~~g 86 (109)
..+|.+.|
T Consensus 89 d~li~~ag 96 (278)
T PRK08277 89 DILINGAG 96 (278)
T ss_pred CEEEECCC
Confidence 55666665
No 202
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=47.18 E-value=45 Score=25.96 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++|+|.+.++.+.+. +-..+.+-+| .-|+..+.|.+..++++++++
T Consensus 104 s~eEI~~~a~~~~~~-Gv~~i~lvgG-e~p~~~~~e~l~eii~~Ik~~ 149 (366)
T TIGR02351 104 NEEEIEREIEAIKKS-GFKEILLVTG-ESEKAAGVEYIAEAIKLAREY 149 (366)
T ss_pred CHHHHHHHHHHHHhC-CCCEEEEeeC-CCCCCCCHHHHHHHHHHHHHh
Confidence 789999999887665 3233433334 335568899999999988764
No 203
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=46.93 E-value=17 Score=27.64 Aligned_cols=73 Identities=18% Similarity=0.345 Sum_probs=47.3
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|.+ |.. +-+....+.|+.=+.++-.+-. ..+++.+.++ -++.||.-+ ....+.+++.+++.++.++
T Consensus 205 ~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~i~~~g 282 (287)
T PF01116_consen 205 DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLAEN--PDKYDPRKLMKAAKEAMKEVVKEKIRLFG 282 (287)
T ss_dssp TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHHHS--TTEHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHHhC--cccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999954 554 4777788899988888743321 1223333321 123778654 4567889999999999876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 283 s 283 (287)
T PF01116_consen 283 S 283 (287)
T ss_dssp T
T ss_pred C
Confidence 4
No 204
>PRK05855 short chain dehydrogenase; Validated
Probab=46.88 E-value=1.5e+02 Score=23.60 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=49.1
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|.+++-.+-.. ...++.+.+. ...+++..... +.+++++.+.+.++.+.+++ ...|.+.|....
T Consensus 330 ~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~ 407 (582)
T PRK05855 330 ETALAFAREGAEVVASDIDEAAAERTAELIR--AAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGG 407 (582)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCccCCCCC
Confidence 47777888999987665422 1222222221 11122222223 47889999999888887766 566666665432
Q ss_pred -CCCChHHHHHHHH
Q psy15360 91 -PDMDPEHVQVLID 103 (109)
Q Consensus 91 -~~tp~eNi~a~v~ 103 (109)
.+++.|.++.+++
T Consensus 408 ~~~~~~~~~~~~~~ 421 (582)
T PRK05855 408 FLDTSAEDWDRVLD 421 (582)
T ss_pred cccCCHHHHHHHHH
Confidence 2456666554443
No 205
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=46.76 E-value=32 Score=24.71 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=32.1
Q ss_pred EeeecccChhhHhhhhcCCccccCCCccc--ccccHHHHHHHHHHHHHH
Q psy15360 29 VGIDWTIEPSLARSIIKNKTLQGNLDPCA--LYASKEKLRKIGTQMAKE 75 (109)
Q Consensus 29 ~~id~~~d~~~~~~~~g~~~l~GNidp~~--L~gt~e~i~~~~~~~l~~ 75 (109)
|++|..-|..+..+.+.. +|++|.. |.|+++++++.++.+--.
T Consensus 110 itvDPerDtp~~lk~Y~~----~~~~~~~~~ltg~~~~~~~~~k~~~V~ 154 (207)
T COG1999 110 ITVDPERDTPEVLKKYAE----LNFDPRWIGLTGTPEQIEEVAKAYGVF 154 (207)
T ss_pred EEECCCCCCHHHHHHHhc----ccCCCCeeeeeCCHHHHHHHHHHhcce
Confidence 588888888777666653 8999963 468999998888866444
No 206
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=46.42 E-value=49 Score=25.45 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=30.2
Q ss_pred ccccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 56 CALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 56 ~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
..|.||||+|.+..+++.+. +-..|||+. .+ ..|.++.|-+.|
T Consensus 300 ~~lVGtpe~Va~~l~~~~~~-Gv~~~~L~~---~~---~~e~~~~~~~~V 342 (346)
T TIGR03565 300 TALVGDPETVAARIREYQDL-GIDTFILSG---YP---HLEEAYRFAELV 342 (346)
T ss_pred cceeCCHHHHHHHHHHHHHc-CCcEEEecC---CC---CHHHHHHHHHhh
Confidence 46789999999999988855 436788883 12 456666665543
No 207
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=46.40 E-value=20 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=31.7
Q ss_pred hhHHHHhccC--CceEeeecc-------c-ChhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTK--YDIVGIDWT-------I-EPSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g--~d~~~id~~-------~-d~~~~~~~~g~~-~l~GNidp 55 (109)
..++.|.+.+ +|++.+|-. + ++++.|+.+++. .+.||+-+
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T 160 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVT 160 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccC
Confidence 4788888875 999988732 2 588899999988 89999854
No 208
>KOG2792|consensus
Probab=46.39 E-value=21 Score=27.21 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=29.7
Q ss_pred eEeeecccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHHHHH
Q psy15360 28 IVGIDWTIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQMAKE 75 (109)
Q Consensus 28 ~~~id~~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~l~~ 75 (109)
.|++|..=|..++...+=. -++|.+| .||.|+|++.+++.---
T Consensus 181 FIsvDPeRD~~~~~~eY~~-----eF~pkllGLTGT~eqvk~vak~yRVY 225 (280)
T KOG2792|consen 181 FISVDPERDSVEVVAEYVS-----EFHPKLLGLTGTTEQVKQVAKKYRVY 225 (280)
T ss_pred EEEeCcccCCHHHHHHHHH-----hcChhhhcccCCHHHHHHHHHHhEEe
Confidence 3577876666655444432 5888765 59999999999976433
No 209
>PRK07695 transcriptional regulator TenI; Provisional
Probab=46.34 E-value=75 Score=22.23 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=16.6
Q ss_pred hhccCCccCC-CCChHHHHHHHHHhhhh
Q psy15360 82 IANLGHGIYP-DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 82 Il~~gcgi~~-~tp~eNi~a~v~a~~~~ 108 (109)
.++.|-.+.. +-|.+.++.+.+..++|
T Consensus 173 gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 173 GIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred EEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 3444444433 45777788888777766
No 210
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=46.18 E-value=52 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=46.7
Q ss_pred ceEeeecccChhhHhhhhcCCccccCCCccccc---ccHHHHHHHHHHHHHHhcc--------ccchhccCCcc---CCC
Q psy15360 27 DIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY---ASKEKLRKIGTQMAKEFGK--------SRYIANLGHGI---YPD 92 (109)
Q Consensus 27 d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~---gt~e~i~~~~~~~l~~~~~--------~g~Il~~gcgi---~~~ 92 (109)
-++|+|+. |++.+++ ++.++++-.++- .+.++..+.++++.+.+.+ =|.|.+...++ ..-
T Consensus 80 V~lHLDH~-~~~~i~~-----ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~ 153 (293)
T PRK07315 80 VAIHLDHG-HYEDALE-----CIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGEL 153 (293)
T ss_pred EEEECCCC-CHHHHHH-----HHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCC
Confidence 46899999 8887765 455678776663 3568888888888887542 23444322221 113
Q ss_pred CChHHHHHHHHH
Q psy15360 93 MDPEHVQVLIDA 104 (109)
Q Consensus 93 tp~eNi~a~v~a 104 (109)
|.+|-.++|+++
T Consensus 154 t~peea~~f~~t 165 (293)
T PRK07315 154 APIEDAKAMVET 165 (293)
T ss_pred CCHHHHHHHHHc
Confidence 788888888754
No 211
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=46.11 E-value=46 Score=26.26 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=46.3
Q ss_pred CCCcEEEeec-chh-hhHHHHhccCCceEeeecccC--hh-hHhhhhcCC--cc--------------ccCCCccccc-c
Q psy15360 3 NDVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIE--PS-LARSIIKNK--TL--------------QGNLDPCALY-A 60 (109)
Q Consensus 3 ~~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d--~~-~~~~~~g~~--~l--------------~GNidp~~L~-g 60 (109)
.++|..+|.+ |.. +-+....+.|+.=+.++-.+. .. ..++.+-.. .+ ...+||..++ .
T Consensus 248 ~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (350)
T PRK09197 248 KPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFKNYDYLQGQVGNPEGEDKPNKKYYDPRVWLRA 327 (350)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHhhhhhhhhccCCCcccCCCCCCcCCHHHHHHH
Confidence 3799999954 654 467777889998888864332 22 223333221 22 1236666443 4
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy15360 61 SKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~ 77 (109)
-.+.+++.+++.++.++
T Consensus 328 ~~~~~~~~v~~~i~~~g 344 (350)
T PRK09197 328 AEASMAARLEEAFEDLN 344 (350)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 55778888888888765
No 212
>PRK08508 biotin synthase; Provisional
Probab=46.06 E-value=47 Score=24.83 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHhccccchh-ccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIA-NLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il-~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
++|+|.+.+++..+. +-..|.+ ..|.+.. +.+.|-+..+++.+|+
T Consensus 41 s~eeI~~~a~~a~~~-g~~~~~lv~sg~~~~-~~~~e~~~ei~~~ik~ 86 (279)
T PRK08508 41 DIEQIVQEAKMAKAN-GALGFCLVTSGRGLD-DKKLEYVAEAAKAVKK 86 (279)
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEEeccCCCC-cccHHHHHHHHHHHHh
Confidence 555555555554433 1122322 3343322 3344555555555543
No 213
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=45.87 E-value=94 Score=24.80 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=14.7
Q ss_pred cCCCCChHHHHHHHHHhhhh
Q psy15360 89 IYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 89 i~~~tp~eNi~a~v~a~~~~ 108 (109)
+.|+...+-+.++++.+++.
T Consensus 264 ~lPG~ND~E~~~iIe~A~~i 283 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREI 283 (414)
T ss_pred ecCCcChHHHHHHHHHHHHh
Confidence 35777788888888877654
No 214
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.86 E-value=1.4e+02 Score=23.87 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHhcc--ccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGK--SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~--~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+.+++.+.++.+-+..-. ..||++. |+-..|.+++.++.+++
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGl-----Pget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGL-----PGETRETIRKTIDFAKE 364 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeC-----CCCCHHHHHHHHHHHHh
Confidence 445555555444332111 3344431 34445666666666554
No 215
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=45.80 E-value=1.2e+02 Score=24.56 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCcEEEeecc--hhhhHHHHhccC-CceEeee----c-ccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAKG--AHYALEELNQTK-YDIVGID----W-TIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKE 75 (109)
Q Consensus 4 ~~pvi~~~~g--~~~~l~~l~~~g-~d~~~id----~-~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~ 75 (109)
+.-|+-|++| |+-+++-|.+-+ .+++.+- + .-|+..++++. .-.|...-.+.=..+|-+++.+...+..
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA---~~~Ga~~~~viD~reeF~~~yi~~~i~a 81 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKA---LELGAEEAYVIDAREEFVEDYIFPAIKA 81 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHH---HHhCCceEEEeecHHHHHHHHHHHHHHh
Confidence 4456889998 456999999877 8887653 2 23455554422 3345544333335666677777777765
Q ss_pred hcc--ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 76 FGK--SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 76 ~~~--~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
..- +.|-|++. -..+==.+++|+++++.
T Consensus 82 na~Yeg~YpL~Ta-----laRPLIak~lVe~A~k~ 111 (403)
T COG0137 82 NALYEGVYPLGTA-----LARPLIAKKLVEAAKKE 111 (403)
T ss_pred hceeeccccccch-----hhHHHHHHHHHHHHHHc
Confidence 432 45655543 22333456777777664
No 216
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=45.73 E-value=47 Score=24.65 Aligned_cols=46 Identities=9% Similarity=0.025 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
..+++.+.++++++++. |..|+-.|.+...-.+.|-++.+++.+++
T Consensus 22 ~~~~d~~~~~A~~~~~~---GAdiIDIG~~~~~~~~~ee~~r~v~~i~~ 67 (252)
T cd00740 22 AEDYDEALDVARQQVEG---GAQILDLNVDYGGLDGVSAMKWLLNLLAT 67 (252)
T ss_pred cCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 46788888888888877 66777777764433456666666665554
No 217
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=45.64 E-value=47 Score=27.14 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
|+|+|.++++.+.+. +-..+.|-+| .-|++.+.|-+..+++++++
T Consensus 116 s~EEI~~ea~~~~~~-G~~~i~LvsG-e~p~~~~~eyi~e~i~~I~~ 160 (469)
T PRK09613 116 TQEEIREEVKALEDM-GHKRLALVAG-EDPPNCDIEYILESIKTIYS 160 (469)
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEEeC-CCCCCCCHHHHHHHHHHHHH
Confidence 689999999987654 3244555455 34578899999999999876
No 218
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=45.53 E-value=14 Score=26.15 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=26.6
Q ss_pred ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCC-CChHHHHHHHHH
Q psy15360 48 TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD-MDPEHVQVLIDA 104 (109)
Q Consensus 48 ~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~-tp~eNi~a~v~a 104 (109)
.|.|+|+| +.|. +.++..++-|.=+|+|=...|+ =..+.|++|+++
T Consensus 151 iLAGGl~p-------~NV~----~ai~~~~p~gvDvsSGvE~~pG~KD~~ki~~fv~~ 197 (197)
T PF00697_consen 151 ILAGGLNP-------ENVR----EAIRQVRPYGVDVSSGVETSPGVKDPEKIKAFVEA 197 (197)
T ss_dssp EEESS--T-------TTHH----HHHHHC--SEEEESGGGEEETTEE-HHHHHHHHHH
T ss_pred EEEcCCCh-------HHHH----HHHHhcCceEEEeCCccccCCCCCCHHHHHHHHhC
Confidence 67777777 3443 3444445555557777777765 567888888874
No 219
>PRK00208 thiG thiazole synthase; Reviewed
Probab=45.53 E-value=1.3e+02 Score=22.73 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=52.7
Q ss_pred CCCCcEEEeecchhhhHHHHhccCCceEee-----ecc--c-ChhhHhhhhcCCccccCCC-cccc---cccHHHHHHHH
Q psy15360 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGI-----DWT--I-EPSLARSIIKNKTLQGNLD-PCAL---YASKEKLRKIG 69 (109)
Q Consensus 2 ~~~~pvi~~~~g~~~~l~~l~~~g~d~~~i-----d~~--~-d~~~~~~~~g~~~l~GNid-p~~L---~gt~e~i~~~~ 69 (109)
+.++-++-+|..+...-..+.++|++++-+ ... + +....+.... ..+ |.+. .++|+++.+..
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e------~~~vpVIveaGI~tpeda~~Am 194 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIE------QADVPVIVDAGIGTPSDAAQAM 194 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHH------hcCCeEEEeCCCCCHHHHHHHH
Confidence 345666668888777777788889998844 111 1 1111111111 112 3332 36888876654
Q ss_pred HHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 70 TQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 70 ~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+ . +-.+.+++++=. -..-|.+.-++|.++++.
T Consensus 195 e----l-GAdgVlV~SAIt-ka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 195 E----L-GADAVLLNTAIA-VAGDPVAMARAFKLAVEA 226 (250)
T ss_pred H----c-CCCEEEEChHhh-CCCCHHHHHHHHHHHHHH
Confidence 4 3 334555666532 225588888999988753
No 220
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=44.92 E-value=70 Score=25.61 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=42.1
Q ss_pred EeecchhhhHHHHhccCCceEeeecccChh---------------hHhhhhcCC--c--cccC--CCccc-ccc-cHHHH
Q psy15360 9 IFAKGAHYALEELNQTKYDIVGIDWTIEPS---------------LARSIIKNK--T--LQGN--LDPCA-LYA-SKEKL 65 (109)
Q Consensus 9 ~~~~g~~~~l~~l~~~g~d~~~id~~~d~~---------------~~~~~~g~~--~--l~GN--idp~~-L~g-t~e~i 65 (109)
.-++-+..+++.+.+.|.++..+|-.-.++ +|.+.++.. + --|. ..|.+ +|| +|++|
T Consensus 360 ~ni~y~~~~~~~~~~~~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v 439 (448)
T PRK08573 360 MNIKYSEELVEKAKSLGYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQTGRRPDIIYDLGDWGKEPMIRILGRTPVEV 439 (448)
T ss_pred EEecCCHHHHHHHHHcCCeEEEEcCCCCchhhhhccccchhHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHH
Confidence 334444568888999999999998554333 444433332 2 2454 55764 564 89999
Q ss_pred HHHHHHHH
Q psy15360 66 RKIGTQMA 73 (109)
Q Consensus 66 ~~~~~~~l 73 (109)
.+.+++++
T Consensus 440 ~~~~~~l~ 447 (448)
T PRK08573 440 VEKLLRLI 447 (448)
T ss_pred HHHHHHHh
Confidence 98888775
No 221
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=44.77 E-value=73 Score=24.61 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=44.1
Q ss_pred CCCCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC--ccccCCCcccccc-cHHHHHHHHHHHHHHhcc
Q psy15360 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDPCALYA-SKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 2 ~~~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~--~l~GNidp~~L~g-t~e~i~~~~~~~l~~~~~ 78 (109)
..++|+-.|...+..-.+...+.|++... +.++.+.++...... ++.| . |.++.| +... ...++++++. +
T Consensus 174 ~~gl~vasH~d~~~~~v~~a~~~Gv~~~E--~p~t~e~a~~a~~~G~~vv~g-a-pn~lrg~s~~g-~~~~~~ll~~-G- 246 (325)
T cd01306 174 ARGIPLASHDDDTPEHVAEAHELGVVISE--FPTTLEAAKAARELGLQTLMG-A-PNVVRGGSHSG-NVSARELAAH-G- 246 (325)
T ss_pred HCCCcEEEecCCChHHHHHHHHCCCeecc--CCCCHHHHHHHHHCCCEEEec-C-cccccCccccc-cHhHHHHHHC-C-
Confidence 35789999987776666777788887764 445666655544433 4444 2 333432 2111 1234555554 1
Q ss_pred ccchhccCC
Q psy15360 79 SRYIANLGH 87 (109)
Q Consensus 79 ~g~Il~~gc 87 (109)
-..+|++.+
T Consensus 247 v~~al~SD~ 255 (325)
T cd01306 247 LLDILSSDY 255 (325)
T ss_pred CeEEEEcCC
Confidence 134667666
No 222
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=44.76 E-value=82 Score=24.97 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHHhhhh
Q psy15360 92 DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 92 ~tp~eNi~a~v~a~~~~ 108 (109)
..|.+.++++.+..++|
T Consensus 197 ~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 197 ADVTEAARKIREAIDSG 213 (430)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 34666677776666654
No 223
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=44.64 E-value=73 Score=23.65 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCcccc-----cccHHHHHHHHHHHHHHhccccchhccC-CccCCCC----ChH---HHHHHHHHhhh
Q psy15360 52 NLDPCAL-----YASKEKLRKIGTQMAKEFGKSRYIANLG-HGIYPDM----DPE---HVQVLIDAIHD 107 (109)
Q Consensus 52 Nidp~~L-----~gt~e~i~~~~~~~l~~~~~~g~Il~~g-cgi~~~t----p~e---Ni~a~v~a~~~ 107 (109)
|+-|--+ +-+++++.++++++++. |..|+-.| ++..|+. +.| .++.+++++++
T Consensus 7 N~tpdSF~dg~~~~~~~~~~~~a~~~~~~---GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~ 72 (257)
T TIGR01496 7 NVTPDSFSDGGRFLSVDKAVAHAERMLEE---GADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRD 72 (257)
T ss_pred eCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5556433 23678888999988887 66666666 3333432 232 47777777764
No 224
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=44.55 E-value=1.1e+02 Score=21.49 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCCcEEEeecchh-hhHHHHhccC-CceEeeecc-cChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhccc
Q psy15360 3 NDVPMTIFAKGAH-YALEELNQTK-YDIVGIDWT-IEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGKS 79 (109)
Q Consensus 3 ~~~pvi~~~~g~~-~~l~~l~~~g-~d~~~id~~-~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~ 79 (109)
.++|+++|+.+.. .+++.+.+.+ ...+-+-+. -++..+++.....+.. .+++..+..+++++ +++++.....
T Consensus 120 ~~~pv~iH~~~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~----~~~~~~~~~d 194 (251)
T cd01310 120 LNLPVVIHSRDAHEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLDLGFYI-SISGIVTFKNANEL----REVVKEIPLE 194 (251)
T ss_pred hCCCeEEEeeCchHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCCEE-EeeeeeccCCCHHH----HHHHHhCChH
Confidence 4789999987765 4777777776 332222221 2445555554322111 12222233333333 4445554446
Q ss_pred cchhccCCc
Q psy15360 80 RYIANLGHG 88 (109)
Q Consensus 80 g~Il~~gcg 88 (109)
.++++|...
T Consensus 195 ril~~TD~p 203 (251)
T cd01310 195 RLLLETDSP 203 (251)
T ss_pred HEEEcccCC
Confidence 778887753
No 225
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.54 E-value=1.1e+02 Score=21.63 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=45.3
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhc-c
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFG-K 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~-~ 78 (109)
++++..+++. .+...+.+.|.+++-++-.. .++++.+.+.. .-+.+-...+ ..+++++++..+++.+.++ +
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA--LTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA 83 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh--cCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4555555442 36777888999988775432 22233332211 1111111122 3578999998898888877 5
Q ss_pred -ccchhccC
Q psy15360 79 -SRYIANLG 86 (109)
Q Consensus 79 -~g~Il~~g 86 (109)
..+|.+.|
T Consensus 84 iD~li~nag 92 (227)
T PRK08862 84 PDVLVNNWT 92 (227)
T ss_pred CCEEEECCc
Confidence 56667665
No 226
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=44.35 E-value=40 Score=26.84 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=40.3
Q ss_pred HhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 21 LNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 21 l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
+....+|.+-+..|. |+..|.+.+.++.+.-++.-.+.-+|.+..++..+ .+++.+.+ |..|..+||+.
T Consensus 263 ~~~~~Id~v~IGSCtn~~~~dl~~aA~ilkgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~~ 338 (389)
T cd01351 263 VEGTKIDQVLIGSCTNNRYSDMLAAAKLLKGAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGP 338 (389)
T ss_pred ccCCceeEEEEecCCCCCHHHHHHHHHHHcCCcCCCCceEEEECCCHHHHHHHHHcChHHHHHHCCCEEeCCCCcc
Confidence 444567777777655 67777777765543333322122377554333332 45555555 77889999985
No 227
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=44.33 E-value=27 Score=27.78 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 18 LEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
+.++....+|..-+..|+ |+..|.+.+.++.+.=++...+.-+|.+..++..+ -+++.+.. |-.|.++||+.
T Consensus 253 v~e~~~~~Id~v~IGSCTNgr~eDl~~AA~iLkG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~ 331 (382)
T cd01583 253 VSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVRPPGCGA 331 (382)
T ss_pred CcccCCcceeEEEEeccCCCChHHHHHHHHHhcCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEeCCCccc
Confidence 344555667877787776 67778888866544434433223478655544444 35555554 66788999985
No 228
>PLN02485 oxidoreductase
Probab=44.30 E-value=43 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 65 LRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 65 i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
-++.++++.+++..-||..=.+|||+ .+-+.++.+++++|
T Consensus 31 ~~~~~~~l~~Ac~~~GFf~l~nHGi~----~~l~~~~~~~~~~F 70 (329)
T PLN02485 31 VAEVVRQLDKACRDAGFFYVKGHGIS----DSLIKKVREVTHEF 70 (329)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCC----HHHHHHHHHHHHHH
Confidence 34456677777776677677889974 45678888877764
No 229
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.30 E-value=1.2e+02 Score=22.00 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=48.2
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC---
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY--- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~--- 90 (109)
.+-..+++.|.+++-.+-.-...+..+.+.. .+ |..-..-. +.+++++++.++++.+.+++ ...|-|.|-.-.
T Consensus 24 aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~-~~-g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~ 101 (271)
T PRK06505 24 GIAKQLAAQGAELAFTYQGEALGKRVKPLAE-SL-GSDFVLPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGFSDKNEL 101 (271)
T ss_pred HHHHHHHhCCCEEEEecCchHHHHHHHHHHH-hc-CCceEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCccCCCccc
Confidence 4777788999998765532111111111111 11 22111112 46889999999999988876 667777764321
Q ss_pred ----CCCChHHHHHHHH
Q psy15360 91 ----PDMDPEHVQVLID 103 (109)
Q Consensus 91 ----~~tp~eNi~a~v~ 103 (109)
.+++.|..+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~ 118 (271)
T PRK06505 102 KGRYADTTRENFSRTMV 118 (271)
T ss_pred cCChhhcCHHHHHHHHh
Confidence 1456666655543
No 230
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.96 E-value=1.2e+02 Score=21.63 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=51.7
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
++++..+++. .+-..+.+.|..++-++.. ...++.+.+. ...+++..... +.+++++++..+++++.+++ .
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~-~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD 85 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA-EAPETQAQVE--ALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID 85 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHH--HcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3455555442 3777788999998866542 2233333221 11122222223 46788999999988888776 5
Q ss_pred cchhccCCccC---CCCChHHHHH
Q psy15360 80 RYIANLGHGIY---PDMDPEHVQV 100 (109)
Q Consensus 80 g~Il~~gcgi~---~~tp~eNi~a 100 (109)
..|.+.|-..+ .+++++..+.
T Consensus 86 ~lv~~ag~~~~~~~~~~~~~~~~~ 109 (251)
T PRK12481 86 ILINNAGIIRRQDLLEFGNKDWDD 109 (251)
T ss_pred EEEECCCcCCCCCcccCCHHHHHH
Confidence 66666664322 1345555443
No 231
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=43.94 E-value=59 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCC-CChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD-MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~-tp~eNi~a~v~a~~~~ 108 (109)
+|+.|.+.. + .++.|.=+|+|=...|+ =.++.|++|++++++|
T Consensus 411 ~peNV~~ai-~----~~P~gVDVsSGVE~~pG~KD~~Ki~~Fi~~vr~~ 454 (454)
T PRK09427 411 NPDNCQQAA-Q----LGCAGLDFNSGVESAPGIKDAQKLASVFQTLRAY 454 (454)
T ss_pred CHHHHHHHH-h----cCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhhC
Confidence 567887764 1 35545556888777665 7899999999999986
No 232
>PRK05854 short chain dehydrogenase; Provisional
Probab=43.90 E-value=1.3e+02 Score=22.34 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=50.9
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCcccc--CCCcccc-cccHHHHHHHHHHHHHHhcc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQG--NLDPCAL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~G--Nidp~~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
+++.++++. .+...+++.|..++-.+-.. ...++.+.+.. ..+ ++....+ +.+++++++.++++.+..++
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~--~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRT--AVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 445555442 37777888999887665321 12223332211 112 2222223 57889999999988887665
Q ss_pred -ccchhccCCccCC--CCChHHHHH
Q psy15360 79 -SRYIANLGHGIYP--DMDPEHVQV 100 (109)
Q Consensus 79 -~g~Il~~gcgi~~--~tp~eNi~a 100 (109)
...|.+.|-.-++ .++.+.++.
T Consensus 94 iD~li~nAG~~~~~~~~~t~~~~e~ 118 (313)
T PRK05854 94 IHLLINNAGVMTPPERQTTADGFEL 118 (313)
T ss_pred ccEEEECCccccCCccccCcccHHH
Confidence 5666666643322 344454443
No 233
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.78 E-value=24 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHHHHHHhc----cccchh---ccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 58 LYASKEKLRKIGTQMAKEFG----KSRYIA---NLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~----~~g~Il---~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
|.|.++.-...++++++... +.++|| +.||+- +|++.+++.+++.
T Consensus 36 ~~~~~~~~~~~a~~~~~~y~~~~~plgw~lpndgyg~~y------~~l~~~~~~~~~~ 87 (261)
T cd06596 36 LNGEKESTTDDARKVADKYKENDMPLGWMLPNDGYGCGY------ENLKEVVDYLHAN 87 (261)
T ss_pred CCCCcccchhhHHHHHHHHHhcCCCceeeccCCCCcchH------HHHHHHHHHHHHc
Confidence 45555555556666777664 456665 456665 9999999998865
No 234
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=43.66 E-value=1.2e+02 Score=21.65 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=49.6
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|.+++-++...+ +.++.+.+.. .-+.+..... +.+++++++.+.++.+.+++ ...|.+.|-.-+
T Consensus 25 ~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 102 (265)
T PRK07097 25 AIAKAYAKAGATIVFNDINQELVDKGLAAYRE--LGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIP 102 (265)
T ss_pred HHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCC
Confidence 477778889999887754321 2222222211 1112222223 46788999999988888765 566666664221
Q ss_pred -CCCChHHHHHHHH
Q psy15360 91 -PDMDPEHVQVLID 103 (109)
Q Consensus 91 -~~tp~eNi~a~v~ 103 (109)
.+++.+.+..+++
T Consensus 103 ~~~~~~~~~~~~~~ 116 (265)
T PRK07097 103 MLEMSAEDFRQVID 116 (265)
T ss_pred cccCCHHHHHHHHH
Confidence 2567776665554
No 235
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.56 E-value=1.1e+02 Score=21.39 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=45.1
Q ss_pred EEEeecch----hhhHHHHhccCCceEeeecccC--hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 7 MTIFAKGA----HYALEELNQTKYDIVGIDWTIE--PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 7 vi~~~~g~----~~~l~~l~~~g~d~~~id~~~d--~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
+++..+++ ..+...+.+.|.+++.++..-+ ..+..+.+.. ...++..... +.+++++.+.++++.+.+++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 45555544 2477778889999888874321 1222222211 1123333223 46788888888888877665
Q ss_pred ccchhccCC
Q psy15360 79 SRYIANLGH 87 (109)
Q Consensus 79 ~g~Il~~gc 87 (109)
...|.+.|-
T Consensus 82 d~vi~~ag~ 90 (256)
T PRK12745 82 DCLVNNAGV 90 (256)
T ss_pred CEEEECCcc
Confidence 555666553
No 236
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=43.35 E-value=40 Score=25.07 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHhccCCceEeeeccc---ChhhHhhhhcCCccccC----CCcccccc-------c---HHHHHHHHHHHHHHhcc--
Q psy15360 18 LEELNQTKYDIVGIDWTI---EPSLARSIIKNKTLQGN----LDPCALYA-------S---KEKLRKIGTQMAKEFGK-- 78 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~~---d~~~~~~~~g~~~l~GN----idp~~L~g-------t---~e~i~~~~~~~l~~~~~-- 78 (109)
+..|+++|++++=.-+.. ..-++...+|=-+++.- ....-.++ + .+...+++++++++.+.
T Consensus 42 ~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP 121 (298)
T PF02836_consen 42 LELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHP 121 (298)
T ss_dssp HHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcC
Confidence 556889999999664322 23445555542122111 11111111 2 35677899999999875
Q ss_pred ccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 79 SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 79 ~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
.-.+-+.|.+. ...+.++.+.+.+|+
T Consensus 122 SIi~W~~gNE~---~~~~~~~~l~~~~k~ 147 (298)
T PF02836_consen 122 SIIMWSLGNES---DYREFLKELYDLVKK 147 (298)
T ss_dssp TEEEEEEEESS---HHHHHHHHHHHHHHH
T ss_pred chheeecCccC---ccccchhHHHHHHHh
Confidence 44566777766 555667777777765
No 237
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=43.27 E-value=42 Score=25.61 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=29.3
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+.||||+|.++++++.+. +-..++|.+. + ..+.+.++.|-+.|
T Consensus 284 ~~Gtpe~v~e~l~~~~~a-Gv~~~~l~~~-~---~~~~~~i~lfa~eV 326 (331)
T TIGR03554 284 VASDPDEAVEQVGQYVDW-GLNHLVFHAP-G---HDQRRFLELFQRDL 326 (331)
T ss_pred ccCCHHHHHHHHHHHHHc-CCCEEEEECC-C---CCHHHHHHHHHhhh
Confidence 469999999999988774 3345666653 2 33467777775543
No 238
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=43.24 E-value=71 Score=24.51 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCcEEEeecchh----hhHHHHhccCCce--E---eeecccChhhHhhhhcCCccccCCCcc-----------cc-cccH
Q psy15360 4 DVPMTIFAKGAH----YALEELNQTKYDI--V---GIDWTIEPSLARSIIKNKTLQGNLDPC-----------AL-YASK 62 (109)
Q Consensus 4 ~~pvi~~~~g~~----~~l~~l~~~g~d~--~---~id~~~d~~~~~~~~g~~~l~GNidp~-----------~L-~gt~ 62 (109)
++|+..|+.... +.++.+.+.|++. + |+|-..|+...++.+...+.. ++|.. .+ +-+.
T Consensus 155 G~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l-~~D~~g~~~~g~~~~~~~~~~~d 233 (308)
T PF02126_consen 155 GAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYL-EFDTIGREFSGKDKNPRVGYPPD 233 (308)
T ss_dssp T-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EE-EETTTT-B-TTTTTCHSCTTS-H
T ss_pred CCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEE-EecCCcccccCcccCccCCCCCH
Confidence 689988876433 5888899999863 2 667777888877777543211 22222 11 3345
Q ss_pred HHHHHHHHHHHHHh
Q psy15360 63 EKLRKIGTQMAKEF 76 (109)
Q Consensus 63 e~i~~~~~~~l~~~ 76 (109)
++-.+...++++..
T Consensus 234 ~~ri~~l~~L~~~G 247 (308)
T PF02126_consen 234 EERIELLKELIEEG 247 (308)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 56667777788764
No 239
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=43.24 E-value=46 Score=26.18 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHhccCCceEeeecccChhh---HhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhcc
Q psy15360 18 LEELNQTKYDIVGIDWTIEPSL---ARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~~d~~~---~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~~ 78 (109)
+....++|+.=+.++-.+..+- +++.+... -+.+||..++ ...+.+++.+++.|+.++.
T Consensus 263 ~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs 325 (347)
T PRK13399 263 IQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEH--PSEFDPRKALKPAMKAMTALCKQRFEAFGT 325 (347)
T ss_pred HHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555678998888875443222 23334222 2358887554 4567899999999998774
No 240
>PRK09875 putative hydrolase; Provisional
Probab=43.24 E-value=1.5e+02 Score=22.61 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=52.2
Q ss_pred CCCcEEEeecch---hhhHHHHhccCC--ceE---eeecccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHH
Q psy15360 3 NDVPMTIFAKGA---HYALEELNQTKY--DIV---GIDWTIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQM 72 (109)
Q Consensus 3 ~~~pvi~~~~g~---~~~l~~l~~~g~--d~~---~id~~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~ 72 (109)
-+.|++.|+... ...++.+.+.|+ +-+ |.|...|+...++.+.-.+..+ +|.... +-+.++..+.++.+
T Consensus 151 TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~-fD~~g~~~~~pd~~r~~~i~~L 229 (292)
T PRK09875 151 TGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQ-FDTIGKNSYYPDEKRIAMLHAL 229 (292)
T ss_pred HCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEE-eccCCCcccCCHHHHHHHHHHH
Confidence 368999895532 257888889999 434 4465578888888774334433 332211 12345566666667
Q ss_pred HHHhccccchhccCCccCCCCC
Q psy15360 73 AKEFGKSRYIANLGHGIYPDMD 94 (109)
Q Consensus 73 l~~~~~~g~Il~~gcgi~~~tp 94 (109)
++..-....++ ++++....+
T Consensus 230 ~~~Gy~drilL--S~D~~~~~~ 249 (292)
T PRK09875 230 RDRGLLNRVML--SMDITRRSH 249 (292)
T ss_pred HhcCCCCeEEE--eCCCCCccc
Confidence 66632344555 555554444
No 241
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=43.14 E-value=1.5e+02 Score=22.53 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHHHHHHhcc-ccchhc--cCCccCC----CCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGK-SRYIAN--LGHGIYP----DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~-~g~Il~--~gcgi~~----~tp~eNi~a~v~a~~~~ 108 (109)
..|.+++.+.++++++.++. +...++ .+|.... .++++.+..+++++.+.
T Consensus 112 ~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 112 GKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999988765 322222 3455555 78999999999988653
No 242
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.99 E-value=32 Score=27.61 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=28.9
Q ss_pred hhHHHHhccCCceEeeeccc--------ChhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI--------EPSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--------d~~~~~~~~g~~-~l~GNidp 55 (109)
...+.+.+.|+|++-+|..- -++++|+.+++. .+.||+.+
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T 204 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVT 204 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCC
Confidence 57888999999999887421 245677777665 66777765
No 243
>PRK07062 short chain dehydrogenase; Provisional
Probab=42.94 E-value=1.2e+02 Score=21.52 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=51.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|..++-++-.. .+.++.+.+....-.+++....+ +.+++++++.++++.+.+++ .
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 89 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGGVD 89 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 444444432 37777888999987665322 22333332211100112222222 46788899888888887776 5
Q ss_pred cchhccCCcc---CCCCChHHHHHHH
Q psy15360 80 RYIANLGHGI---YPDMDPEHVQVLI 102 (109)
Q Consensus 80 g~Il~~gcgi---~~~tp~eNi~a~v 102 (109)
..|.+.|-.- ..+++.+.....+
T Consensus 90 ~li~~Ag~~~~~~~~~~~~~~~~~~~ 115 (265)
T PRK07062 90 MLVNNAGQGRVSTFADTTDDAWRDEL 115 (265)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHH
Confidence 6666666432 1245555544433
No 244
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=42.81 E-value=36 Score=27.43 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHHH-HHHHhcc-ccchhccCCcc
Q psy15360 18 LEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQ-MAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~-~l~~~~~-~g~Il~~gcgi 89 (109)
+..+....+|...+..|+ |+..|.+.+.++.+.=++...+.-||.+...+..++ +++.+.. |-.|..+||+.
T Consensus 282 v~~~~g~~id~~~IGSCTngr~eDl~~aA~il~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~ 360 (418)
T PRK00402 282 VSEVEGTKVDQVFIGSCTNGRLEDLRIAAEILKGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGP 360 (418)
T ss_pred chhhCCceeeEEEEecCCCCChHHHHHHHHHHcCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCcccc
Confidence 445666778888887776 667777877655444344432334786555444442 4444444 66688999985
No 245
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=42.55 E-value=46 Score=23.29 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred chhhhHHHHhccCCceEeeeccc---------ChhhHhhhhcCCcc--ccCCCcc----cccccHHHHH
Q psy15360 13 GAHYALEELNQTKYDIVGIDWTI---------EPSLARSIIKNKTL--QGNLDPC----ALYASKEKLR 66 (109)
Q Consensus 13 g~~~~l~~l~~~g~d~~~id~~~---------d~~~~~~~~g~~~l--~GNidp~----~L~gt~e~i~ 66 (109)
|.+-+...+.+.|+.+++-|.-. -.+++++.+|...+ .|++|-. .+|++++..+
T Consensus 14 GKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 82 (194)
T PRK00081 14 GKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARK 82 (194)
T ss_pred CHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHH
Confidence 33446777778899888877321 13556777886633 7999964 2367765544
No 246
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.52 E-value=1.3e+02 Score=21.62 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=43.4
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc---
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI--- 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi--- 89 (109)
.+...+.+-|.+++.++-..+ .++..+.....-..+++..... +.+++++++ ++++.+.+++ ...|.+.|-.-
T Consensus 18 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~id~vv~~ag~~~~~~ 96 (280)
T PRK06914 18 LTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGRIDLLVNNAGYANGGF 96 (280)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCCeeEEEECCcccccCc
Confidence 477778888999887764322 2222221111011122222222 367888888 8888777665 55555555322
Q ss_pred CCCCChHHHH
Q psy15360 90 YPDMDPEHVQ 99 (109)
Q Consensus 90 ~~~tp~eNi~ 99 (109)
..+++.+..+
T Consensus 97 ~~~~~~~~~~ 106 (280)
T PRK06914 97 VEEIPVEEYR 106 (280)
T ss_pred cccCCHHHHH
Confidence 1245555443
No 247
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.43 E-value=47 Score=25.52 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=32.7
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+++++++.+ ..+.|-.+| ..+||++++.++.+ . ...-+-.+| +..++|+.++-++
T Consensus 214 tleea~eA~-----~aGaDiImLDnmspe~l~~av~~~-~---~~~~lEaSG-----GIt~~ni~~yA~t 269 (294)
T PRK06978 214 TLAQLETAL-----AHGAQSVLLDNFTLDMMREAVRVT-A---GRAVLEVSG-----GVNFDTVRAFAET 269 (294)
T ss_pred CHHHHHHHH-----HcCCCEEEECCCCHHHHHHHHHhh-c---CCeEEEEEC-----CCCHHHHHHHHhc
Confidence 455565543 345666666 67888888877632 2 122344444 6677888877654
No 248
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.39 E-value=25 Score=25.66 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=23.2
Q ss_pred HHHHhccCCceEeeecc-cChhhHhhhhcCC
Q psy15360 18 LEELNQTKYDIVGIDWT-IEPSLARSIIKNK 47 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~ 47 (109)
++.-.+.++|.+|+.+. +++.++++.++.+
T Consensus 74 ~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~ 104 (211)
T COG0352 74 VDLALAVGADGVHLGQDDMPLAEARELLGPG 104 (211)
T ss_pred HHHHHhCCCCEEEcCCcccchHHHHHhcCCC
Confidence 34344789999999765 7888999988875
No 249
>PRK06114 short chain dehydrogenase; Provisional
Probab=42.34 E-value=1.2e+02 Score=21.42 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=52.2
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccC--hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIE--PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d--~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
++++..+++. .+...+.+.|.+++-.+-.-+ +.+..+.+.. .-+++..... +.+++.+++..+++.+.+++
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 86 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA--AGRRAIQIAADVTSKADLRAAVARTEAELGA 86 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3455555442 477778889999887664221 2333332221 1112322222 46788899888888887766
Q ss_pred -ccchhccCCcc---CCCCChHHHHHHH
Q psy15360 79 -SRYIANLGHGI---YPDMDPEHVQVLI 102 (109)
Q Consensus 79 -~g~Il~~gcgi---~~~tp~eNi~a~v 102 (109)
...|.+.|-.- ..+.+.+.++.++
T Consensus 87 id~li~~ag~~~~~~~~~~~~~~~~~~~ 114 (254)
T PRK06114 87 LTLAVNAAGIANANPAEEMEEEQWQTVM 114 (254)
T ss_pred CCEEEECCCCCCCCChHhCCHHHHHHHH
Confidence 56666666321 1234556555443
No 250
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=42.31 E-value=39 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 66 RKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 66 ~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.++++.+++..-||+.=.+|||+ .|-+.++.+.+++|
T Consensus 49 ~~~~~~l~~Ac~~~GFf~v~nHGI~----~~l~~~~~~~~~~f 87 (337)
T PLN02639 49 AQVVQQIGDACRRYGFFQVINHGVS----AELVEKMLAVAHEF 87 (337)
T ss_pred HHHHHHHHHHHHhCCEEEEEcCCCC----HHHHHHHHHHHHHH
Confidence 3445566666666788888899985 67788888877765
No 251
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.17 E-value=75 Score=24.66 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+++++++-.+++...+...-+ +-.+..+||+.|.+-...+++.+++++
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~-VvlsGSlP~g~~~d~y~~li~~~~~~g 159 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDI-VVLSGSLPPGVPPDAYAELIRILRQQG 159 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCE-EEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 445554444444333343333 555568999999999999999988753
No 252
>PRK09061 D-glutamate deacylase; Validated
Probab=42.13 E-value=70 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHH-HhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 61 SKEKLRKIGTQMAK-EFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 61 t~e~i~~~~~~~l~-~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
|++++.+- +++++ .+..|.+-|+++..-.|..+.+-+.++.+.+++|+
T Consensus 164 t~~el~~m-~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g 212 (509)
T PRK09061 164 TPAELAEI-LELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAG 212 (509)
T ss_pred CHHHHHHH-HHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcC
Confidence 45665333 33333 22236666776655556778888999999998874
No 253
>PRK04302 triosephosphate isomerase; Provisional
Probab=41.85 E-value=52 Score=23.61 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=46.9
Q ss_pred hHHHHhccCCceEeeec---ccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhccccchh--c---cCCc
Q psy15360 17 ALEELNQTKYDIVGIDW---TIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIA--N---LGHG 88 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~---~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il--~---~gcg 88 (109)
..+.++++|+|.+-+.. .....|+.+.+.. +..=++.|.+..++.+++++. ...+ ..||- + .|.+
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~-a~~~Gl~~I~~v~~~~~~~~~-----~~~~-~~~I~~~p~~~igt~ 149 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTLADIEAVVER-AKKLGLESVVCVNNPETSAAA-----AALG-PDYVAVEPPELIGTG 149 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCHHHHHHHHHH-HHHCCCeEEEEcCCHHHHHHH-----hcCC-CCEEEEeCccccccC
Confidence 47778899999886654 3556666555533 333378886446776655532 1222 22321 1 1222
Q ss_pred cCC-CCChHHHHHHHHHhhh
Q psy15360 89 IYP-DMDPEHVQVLIDAIHD 107 (109)
Q Consensus 89 i~~-~tp~eNi~a~v~a~~~ 107 (109)
... ..+++.++.+++.+++
T Consensus 150 ~~~~~~~~~~i~~~~~~ir~ 169 (223)
T PRK04302 150 IPVSKAKPEVVEDAVEAVKK 169 (223)
T ss_pred CCCCcCCHHHHHHHHHHHHh
Confidence 221 2456778888777765
No 254
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=41.79 E-value=47 Score=25.89 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+++++-.+.++++.+++..-||..=.+|||+ .+-+.++.++++++
T Consensus 63 ~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~----~~li~~~~~~~~~F 107 (362)
T PLN02393 63 DDARLRDATLRAISEACREWGFFQVVNHGVR----PELMDRAREAWREF 107 (362)
T ss_pred CChHHHHHHHHHHHHHHHHCcEEEEEeCCCC----HHHHHHHHHHHHHH
Confidence 3444445566677777777788788899984 66777777777664
No 255
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=41.74 E-value=1.4e+02 Score=21.95 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=8.4
Q ss_pred hHHHHhccCCceEeee
Q psy15360 17 ALEELNQTKYDIVGID 32 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id 32 (109)
.++.|+++|++.++++
T Consensus 125 ~l~~Lk~aG~~~v~i~ 140 (296)
T TIGR00433 125 QAKRLKDAGLDYYNHN 140 (296)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 5555555555554443
No 256
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=41.69 E-value=56 Score=25.70 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCcEEEee-cchh-hhHHHHhccCCceEeeecccC--hh-hHhhhhcCC-------------cccc---CCCccccc-cc
Q psy15360 4 DVPMTIFA-KGAH-YALEELNQTKYDIVGIDWTIE--PS-LARSIIKNK-------------TLQG---NLDPCALY-AS 61 (109)
Q Consensus 4 ~~pvi~~~-~g~~-~~l~~l~~~g~d~~~id~~~d--~~-~~~~~~g~~-------------~l~G---Nidp~~L~-gt 61 (109)
++|..+|. +|+. .-+....+.|+.=+.++-.+. .. .+++.+... ..+. .+||..++ .-
T Consensus 245 ~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 324 (345)
T cd00946 245 PLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREG 324 (345)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhhcchhhccccCCCcccCCCCccccCHHHHHHHH
Confidence 68888884 4654 467777889998888864332 22 234444221 1123 38887543 45
Q ss_pred HHHHHHHHHHHHHHhc
Q psy15360 62 KEKLRKIGTQMAKEFG 77 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~ 77 (109)
.+.+.+.+++.++.++
T Consensus 325 ~~~~~~~v~~~i~~~g 340 (345)
T cd00946 325 EKSMVARVKKAFEDLN 340 (345)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5788899999988865
No 257
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=41.65 E-value=1.1e+02 Score=20.60 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=10.5
Q ss_pred hHHHHhccCCceEeeec
Q psy15360 17 ALEELNQTKYDIVGIDW 33 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~ 33 (109)
+++.+.+.|++++.+..
T Consensus 18 ~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHhCCcEEEECH
Confidence 55556666777666654
No 258
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=41.62 E-value=42 Score=25.76 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.++++.+++..-||..=.+||| |.+-++++.+++++|
T Consensus 22 ~~~~~l~~A~~~~GFF~v~nHGI----~~~l~~~~~~~~~~f 59 (321)
T PLN02299 22 ATMELIKDACENWGFFELVNHGI----SHELMDEVEKMTKEH 59 (321)
T ss_pred HHHHHHHHHHHhcCEEEEECCCC----CHHHHHHHHHHHHHH
Confidence 34455555556678888889987 778888888888765
No 259
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=41.54 E-value=49 Score=26.73 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=42.1
Q ss_pred ccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 23 QTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 23 ~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
...+|..-+..|+ |+..|.+.+.++.+.=++...+.-+|.+...+..+ -+++.+.. |..|.++||+.
T Consensus 289 g~~id~v~IGSCTngr~eDl~~AA~iLkG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~ 362 (419)
T TIGR02083 289 EIKIDQVVIGSCTNGRLEDLRLAAEILKGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGP 362 (419)
T ss_pred cCccCeEEEEcCCCCChHHHHHHHHHHcCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCcccc
Confidence 5667777777766 67778888876633333443233478665555544 35555555 77889999985
No 260
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=41.36 E-value=40 Score=22.97 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=37.3
Q ss_pred hhHhhhhcCC-ccccCCCcc--cccc--cHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 38 SLARSIIKNK-TLQGNLDPC--ALYA--SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 38 ~~~~~~~g~~-~l~GNidp~--~L~g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
....+.++.. ..+|+++.. ++.| +++++++..++.++. |++-+.|+- |+|..
T Consensus 59 ~hv~ky~~~ELgt~g~i~~~~lii~G~~~~~~i~~~L~~yI~~-----yVlC~~C~s-pdT~l 115 (138)
T PRK03988 59 KHVAKFLLKELGTAGNIEGGRLILQGKFSPRVINEKIDRYVKE-----YVICPECGS-PDTKL 115 (138)
T ss_pred HHHHHHHHHHhCCceeecCCEEEEEEeeCHHHHHHHHHHHHHh-----cEECCCCCC-CCcEE
Confidence 3344555656 778888764 3456 688999999999976 999999997 45543
No 261
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=41.32 E-value=1.2e+02 Score=21.01 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=41.0
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~g 86 (109)
.+.+.+.+.|..++..+..-+ .++++..... ...+++..... +.+++.+.+.++++.+..++ ..+|.+.|
T Consensus 17 ~la~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 89 (245)
T PRK12824 17 AIARELLNDGYRVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNAG 89 (245)
T ss_pred HHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 477778888999888765422 2333322211 22233333323 45678888888888887765 45555554
No 262
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.19 E-value=47 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=24.5
Q ss_pred CCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 52 NLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 52 Nidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
..|-.+| +.+||++++.++.+ .. . ++.++-.+. +..++|+.++-++
T Consensus 208 gaDiImLDNm~~e~~~~av~~l-~~-~-~~~~lEaSG----gIt~~ni~~yA~t 254 (280)
T COG0157 208 GADIIMLDNMSPEELKEAVKLL-GL-A-GRALLEASG----GITLENIREYAET 254 (280)
T ss_pred CCCEEEecCCCHHHHHHHHHHh-cc-C-CceEEEEeC----CCCHHHHHHHhhc
Confidence 4444455 56778887777765 11 1 333332222 4556677665543
No 263
>PLN02562 UDP-glycosyltransferase
Probab=41.16 E-value=1.5e+02 Score=23.81 Aligned_cols=88 Identities=8% Similarity=0.081 Sum_probs=48.8
Q ss_pred EEEeecchhhhHHHHhccCCceEee----ecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHH--hcc-
Q psy15360 7 MTIFAKGAHYALEELNQTKYDIVGI----DWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKE--FGK- 78 (109)
Q Consensus 7 vi~~~~g~~~~l~~l~~~g~d~~~i----d~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~--~~~- 78 (109)
..++-||.+..++.+. .|+=.+.+ |+..+-..+.+.+|-. .+ .++ +.++|.+.++++++. ++.
T Consensus 349 ~fvtH~G~nS~~Eal~-~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~-~~~-------~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 349 CYLTHCGWNSTMEAIQ-CQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI-SGF-------GQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred eEEecCcchhHHHHHH-cCCCEEeCCcccchHHHHHHHHHHhCceeEe-CCC-------CHHHHHHHHHHHhCCHHHHHH
Confidence 4556677777778775 77766543 6555555544444433 23 222 456666666666621 210
Q ss_pred ----ccchhccCCccCCCCChHHHHHHHHHhh
Q psy15360 79 ----SRYIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 79 ----~g~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
..-+..-+.| +++..|+..|++..+
T Consensus 420 a~~l~~~~~~~~~g---GSS~~nl~~~v~~~~ 448 (448)
T PLN02562 420 LMKLRERAMGEEAR---LRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHHHHhcCCC---CCHHHHHHHHHHHhC
Confidence 1112222222 688999999998653
No 264
>PRK06256 biotin synthase; Validated
Probab=41.11 E-value=47 Score=25.22 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-++|+|.++++++.+... ..+++.+|..-|...+.+.+..+++.+++
T Consensus 91 ~s~eeI~~~~~~~~~~g~-~~~~l~~~g~~p~~~~~~~~~e~i~~i~~ 137 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGA-GTFCIVASGRGPSGKEVDQVVEAVKAIKE 137 (336)
T ss_pred CCHHHHHHHHHHHHHCCC-CEEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence 477888888887776522 23444333332333345667777776654
No 265
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=41.10 E-value=1.3e+02 Score=22.67 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=51.1
Q ss_pred CCCcEEEeec-------chhhhHHHHhccCCceEee-ecccChhhHhhhhcCCccccCCCccccc--ccH-HHHHHHHHH
Q psy15360 3 NDVPMTIFAK-------GAHYALEELNQTKYDIVGI-DWTIEPSLARSIIKNKTLQGNLDPCALY--ASK-EKLRKIGTQ 71 (109)
Q Consensus 3 ~~~pvi~~~~-------g~~~~l~~l~~~g~d~~~i-d~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~-e~i~~~~~~ 71 (109)
.++|+++.+= |-..++....++|+|++=+ | +.++|..+... .+-.=++++..|. .|+ +.+++
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD--LP~ee~~~~~~-~~~~~gl~~I~lv~p~t~~~Ri~~---- 158 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPD--LPPEESEELRE-AAKKHGLDLIPLVAPTTPEERIKK---- 158 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETT--SBGGGHHHHHH-HHHHTT-EEEEEEETTS-HHHHHH----
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcC--CChHHHHHHHH-HHHHcCCeEEEEECCCCCHHHHHH----
Confidence 4677766643 3445888899999998744 4 33444433221 1333368886553 233 33333
Q ss_pred HHHHhccccchhcc-CCccCC-C-CChHHHHHHHHHhhhh
Q psy15360 72 MAKEFGKSRYIANL-GHGIYP-D-MDPEHVQVLIDAIHDA 108 (109)
Q Consensus 72 ~l~~~~~~g~Il~~-gcgi~~-~-tp~eNi~a~v~a~~~~ 108 (109)
+.+.. .|||.-. --|+.- . .-.+.+..+++.+|++
T Consensus 159 i~~~a--~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~ 196 (259)
T PF00290_consen 159 IAKQA--SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH 196 (259)
T ss_dssp HHHH---SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT
T ss_pred HHHhC--CcEEEeeccCCCCCCcccchHHHHHHHHHHHhh
Confidence 33321 4665542 233321 2 2346789999988876
No 266
>PRK08445 hypothetical protein; Provisional
Probab=40.95 E-value=63 Score=25.10 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++|+|.+.+++..+... ..+.+ .| |..|..+.|-+..+++++++.
T Consensus 74 ~~eeI~~~~~~a~~~g~-~~i~~-~g-g~~~~~~~e~~~~l~~~Ik~~ 118 (348)
T PRK08445 74 SFEEIDKKIEELLAIGG-TQILF-QG-GVHPKLKIEWYENLVSHIAQK 118 (348)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEE-ec-CCCCCCCHHHHHHHHHHHHHH
Confidence 78999999988766532 23333 44 567788999999999988764
No 267
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=40.88 E-value=62 Score=25.54 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=36.3
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhh
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
.+.|.-+-. +| .++++++++.+++.++. +.-|.+-||.+-....+. .+.+.+.++
T Consensus 217 plHGGA~e~~~~~l~~i~~~~~~~~~v~~~l~~---~~~i~GfGH~vyk~~DPR-a~~L~~~~~ 276 (373)
T cd06112 217 PLHGGANEDVLEMLEEIGSPENVKAYLDKKLAN---KQKIWGFGHRVYKTKDPR-ATILQKLAE 276 (373)
T ss_pred ccccchHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCeeeCCCCccCCCCCcH-HHHHHHHHH
Confidence 455554432 23 37788888888888776 667889999998776663 344444443
No 268
>PTZ00300 pyruvate kinase; Provisional
Probab=40.83 E-value=1e+02 Score=25.17 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=50.2
Q ss_pred hhHHHHhccCCceEeeec---ccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHHHHHhccccchhccCCccC
Q psy15360 16 YALEELNQTKYDIVGIDW---TIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIY 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~---~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~ 90 (109)
..+....+.|+|.+.+.+ .-|+.++++.++.. |-++.++ .-+++.++ ...++++.. -+.+++.| ++.
T Consensus 151 ~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~----~~~~~IiaKIEt~eav~-nldeI~~~~--DgImVaRG-DLg 222 (454)
T PTZ00300 151 ADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAK----GGDIMIICKIENHQGVQ-NIDSIIEES--DGIMVARG-DLG 222 (454)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhc----CCCceEEEEECCHHHHH-hHHHHHHhC--CEEEEecc-hhh
Confidence 455666789999987654 33667777777541 2244333 46888886 557777542 36777877 677
Q ss_pred CCCChHHHHHH
Q psy15360 91 PDMDPEHVQVL 101 (109)
Q Consensus 91 ~~tp~eNi~a~ 101 (109)
-..|.|.+..+
T Consensus 223 vei~~e~vp~~ 233 (454)
T PTZ00300 223 VEIPAEKVVVA 233 (454)
T ss_pred hhcChHHHHHH
Confidence 77778777443
No 269
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=40.71 E-value=55 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=20.4
Q ss_pred hHHHHhccCCceEeeecc-cChhhHhhhhcCC
Q psy15360 17 ALEELNQTKYDIVGIDWT-IEPSLARSIIKNK 47 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~ 47 (109)
..+...+.|+|.+|+.+. .+..++++.++..
T Consensus 64 ~~~la~~~~~dGvHl~~~~~~~~~~r~~~~~~ 95 (180)
T PF02581_consen 64 RVDLALELGADGVHLGQSDLPPAEARKLLGPD 95 (180)
T ss_dssp -HHHHHHCT-SEEEEBTTSSSHHHHHHHHTTT
T ss_pred CHHHHHhcCCCEEEecccccchHHhhhhcccc
Confidence 345555789999999754 5677787777543
No 270
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.66 E-value=43 Score=25.57 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=33.2
Q ss_pred ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 36 EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+++++++. +..+.|-.+| ..+||++++.+.. +. +...+-.+| +..++|+.++-++
T Consensus 202 slee~~ea-----~~~gaDiImLDn~s~e~l~~av~~-~~---~~~~leaSG-----gI~~~ni~~yA~t 257 (281)
T PRK06543 202 RLDQIEPV-----LAAGVDTIMLDNFSLDDLREGVEL-VD---GRAIVEASG-----NVNLNTVGAIAST 257 (281)
T ss_pred CHHHHHHH-----HhcCCCEEEECCCCHHHHHHHHHH-hC---CCeEEEEEC-----CCCHHHHHHHHhc
Confidence 44555443 3345666666 6788888888763 32 123455555 6778888877654
No 271
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=40.57 E-value=1.3e+02 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=16.7
Q ss_pred chhhhHHHHhccCCceEeeecc
Q psy15360 13 GAHYALEELNQTKYDIVGIDWT 34 (109)
Q Consensus 13 g~~~~l~~l~~~g~d~~~id~~ 34 (109)
+....++...+.|+|.+.+|..
T Consensus 76 ~~~~~v~~a~~aGad~I~~d~~ 97 (221)
T PRK01130 76 PTLKEVDALAAAGADIIALDAT 97 (221)
T ss_pred CCHHHHHHHHHcCCCEEEEeCC
Confidence 3344677888999999988764
No 272
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=40.38 E-value=34 Score=26.54 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.++++.+++..-||..=.+|||+. |-++++.+++++|
T Consensus 57 ~~~~~l~~A~~~~GFf~v~nHGI~~----~l~~~~~~~~~~F 94 (348)
T PLN02912 57 DIINQFAHACSSYGFFQIKNHGVPE----ETIKKMMNVAREF 94 (348)
T ss_pred HHHHHHHHHHHHCCEEEEEeCCCCH----HHHHHHHHHHHHH
Confidence 3445666666667888888998754 8888888888775
No 273
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.35 E-value=1.2e+02 Score=21.21 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=9.9
Q ss_pred CCChHHHHHHHHH
Q psy15360 92 DMDPEHVQVLIDA 104 (109)
Q Consensus 92 ~tp~eNi~a~v~a 104 (109)
+..++|+..+.++
T Consensus 160 GI~~~n~~~~l~a 172 (187)
T PRK07455 160 GVTLENAQAFIQA 172 (187)
T ss_pred CCCHHHHHHHHHC
Confidence 5677888888775
No 274
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=40.21 E-value=54 Score=26.64 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=44.4
Q ss_pred hHHHHhccCCceEeeeccc----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+.++....+|..-+..|+ |+..|.+.+.++..-+ +...+.-||.+..++..+ -+++.+.. |-.|.++||+.
T Consensus 310 ~v~e~~g~~id~~~IGSCTnr~eDl~~AA~ilkg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~ 387 (436)
T cd01581 310 LLSEVAGKKIDEVFIGSCMTNIGHFRAAAKILRGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSL 387 (436)
T ss_pred EhHHhcCCccceEEEecCCCCHHHHHHHHHHHcCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccc
Confidence 3555667778888888876 6777888886655111 221122378655444444 34555554 77889999985
No 275
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.98 E-value=1.3e+02 Score=21.17 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=44.0
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-cc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
+++..+++. .+...+.+.|..++.++-.-...++.+.+... .+++..... +.+++++++.++++.+.+++ ..
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 87 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVEAFGRIDV 87 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeE
Confidence 455555432 47777888999988776432233333333111 111112122 45788898888888887765 44
Q ss_pred chhccC
Q psy15360 81 YIANLG 86 (109)
Q Consensus 81 ~Il~~g 86 (109)
.|.+.|
T Consensus 88 lv~nAg 93 (260)
T PRK12823 88 LINNVG 93 (260)
T ss_pred EEECCc
Confidence 555555
No 276
>PRK15108 biotin synthase; Provisional
Probab=39.84 E-value=1.8e+02 Score=22.56 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCcEEEeecchhh-hHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhcc--cc
Q psy15360 4 DVPMTIFAKGAHY-ALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFGK--SR 80 (109)
Q Consensus 4 ~~pvi~~~~g~~~-~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~--~g 80 (109)
++++++..+..+. .+..|+++|+|.++++-..+..--.+....+ +.++..+..+.+.+..-. -|
T Consensus 124 ~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~-------------~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 124 GLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTR-------------TYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred CCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCC-------------CHHHHHHHHHHHHHcCCceeeE
Q ss_pred chhccCCccCCCCChHHHHHHHHHhh
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
.|++.| .|+.|-+..+.....
T Consensus 191 ~i~Glg-----Et~ed~v~~~~~l~~ 211 (345)
T PRK15108 191 GIVGLG-----ETVKDRAGLLLQLAN 211 (345)
T ss_pred EEEeCC-----CCHHHHHHHHHHHHh
No 277
>PRK05926 hypothetical protein; Provisional
Probab=39.77 E-value=65 Score=25.35 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
-++|+|.+++++. +. +-..+.+-+|.. |+.+.|-+..+++++++.
T Consensus 99 ls~eeI~~~a~~a-~~-G~~ei~iv~G~~--p~~~~e~~~e~i~~Ik~~ 143 (370)
T PRK05926 99 YTPDQLVQSIKEN-PS-PITETHIVAGCF--PSCNLAYYEELFSKIKQN 143 (370)
T ss_pred CCHHHHHHHHHHH-hc-CCCEEEEEeCcC--CCCCHHHHHHHHHHHHHh
Confidence 3689999999887 43 323344444554 678999999999988863
No 278
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=39.66 E-value=19 Score=22.54 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=13.5
Q ss_pred ccCCCcccccccHHHHHHHHHH
Q psy15360 50 QGNLDPCALYASKEKLRKIGTQ 71 (109)
Q Consensus 50 ~GNidp~~L~gt~e~i~~~~~~ 71 (109)
.|+=+-.+++|..++|+.-.++
T Consensus 38 fg~~~~~vvfGd~~~i~~~Le~ 59 (83)
T PF08503_consen 38 FGSGNFGVVFGDWDEIKPFLEA 59 (83)
T ss_dssp EEESSEEEEEEEHHHHHHHHHH
T ss_pred EeCCCcEEEEecHHHHHHHHHh
Confidence 3333334667888888766553
No 279
>KOG1208|consensus
Probab=39.59 E-value=1.3e+02 Score=23.11 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=51.6
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccCCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPD 92 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~ 92 (109)
.....|+..|+.++-...... -.++++.+....-..++.-.-| +.+.+.|++-+.+......+ ...|.|.|...+|.
T Consensus 50 eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ldvLInNAGV~~~~~ 129 (314)
T KOG1208|consen 50 ETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMAPPF 129 (314)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCCCccEEEeCcccccCCc
Confidence 366778899988875544332 2334444432122223322334 68999999999999988777 78899999888776
Q ss_pred C
Q psy15360 93 M 93 (109)
Q Consensus 93 t 93 (109)
.
T Consensus 130 ~ 130 (314)
T KOG1208|consen 130 S 130 (314)
T ss_pred c
Confidence 3
No 280
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=39.50 E-value=39 Score=25.63 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=28.8
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+.||||+|.++.+++.+. +-..++++.--+ ..+.+.++.|-+.|
T Consensus 281 i~Gtpe~v~~~l~~~~~a-Gvd~v~l~~~~~---~~~~~~~~l~~~eV 324 (325)
T PRK02271 281 IAGTPEDVVEKIEALLEM-GVTQIVAGSPIG---PDKEKAIKLIGKAI 324 (325)
T ss_pred CcCCHHHHHHHHHHHHHc-CCCEEEecCCCC---CCHHHHHHHHHhhc
Confidence 569999999999987764 334566642111 23457777776544
No 281
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=39.48 E-value=1.2e+02 Score=20.39 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=14.6
Q ss_pred HhccCCceEeeecccChhhHhhhh
Q psy15360 21 LNQTKYDIVGIDWTIEPSLARSII 44 (109)
Q Consensus 21 l~~~g~d~~~id~~~d~~~~~~~~ 44 (109)
|.+.|++++...-++..++..+..
T Consensus 23 L~~~GfeVidLG~~v~~e~~v~aa 46 (128)
T cd02072 23 FTEAGFNVVNLGVLSPQEEFIDAA 46 (128)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHH
Confidence 445677777776666666554433
No 282
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=39.20 E-value=1.3e+02 Score=22.31 Aligned_cols=82 Identities=11% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHhccCCceEeeecccChhhHhhhhcC---C-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCC-CC
Q psy15360 19 EELNQTKYDIVGIDWTIEPSLARSIIKN---K-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP-DM 93 (109)
Q Consensus 19 ~~l~~~g~d~~~id~~~d~~~~~~~~g~---~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~-~t 93 (109)
....+.|+|.+-..|.-+++..++.... . ...|+++. .|.++..+.++++++.... | ++.|=.|.. .-
T Consensus 167 ~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GGi~~----~~~~~~l~~v~~~~~aGA~-G--is~gr~i~~~~~ 239 (267)
T PRK07226 167 RVAAELGADIVKTNYTGDPESFREVVEGCPVPVVIAGGPKT----DTDREFLEMVRDAMEAGAA-G--VAVGRNVFQHED 239 (267)
T ss_pred HHHHHHCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-E--EehhhhhhcCCC
Confidence 3344789999977776555555555432 2 34566554 2456777777777776332 2 344444432 45
Q ss_pred ChHHHHHHHHHhhh
Q psy15360 94 DPEHVQVLIDAIHD 107 (109)
Q Consensus 94 p~eNi~a~v~a~~~ 107 (109)
|.+.++++...+|+
T Consensus 240 p~~~~~~l~~~v~~ 253 (267)
T PRK07226 240 PEAITRAISAVVHE 253 (267)
T ss_pred HHHHHHHHHHHHhC
Confidence 78888888877764
No 283
>PRK05927 hypothetical protein; Provisional
Probab=39.10 E-value=73 Score=24.85 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-++|+|.+.+++..+. +-..+.+..|.. |+.+.|-+..+++++|+
T Consensus 76 ls~eei~~~a~~~~~~-G~~~i~i~gG~~--p~~~~e~~~~~i~~ik~ 120 (350)
T PRK05927 76 LSFDEFRSLMQRYVSA-GVKTVLLQGGVH--PQLGIDYLEELVRITVK 120 (350)
T ss_pred cCHHHHHHHHHHHHHC-CCCEEEEeCCCC--CCCCHHHHHHHHHHHHH
Confidence 3688899888887765 223455665555 67889999888888875
No 284
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=39.00 E-value=24 Score=24.81 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=35.2
Q ss_pred cchhhhHHHHhccCCceEeeeccc------C---hhhHhhhhcCCc--cccCCCcc----cccccHHH
Q psy15360 12 KGAHYALEELNQTKYDIVGIDWTI------E---PSLARSIIKNKT--LQGNLDPC----ALYASKEK 64 (109)
Q Consensus 12 ~g~~~~l~~l~~~g~d~~~id~~~------d---~~~~~~~~g~~~--l~GNidp~----~L~gt~e~ 64 (109)
+|.+.+...+.+.|+.+++-|.-. + ....++.+|... -.|.+|-. ++|.+++.
T Consensus 11 sGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 11 SGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp SSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 344568888889999999887321 2 356788899773 47999975 34677653
No 285
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.93 E-value=1.4e+02 Score=21.27 Aligned_cols=81 Identities=9% Similarity=0.043 Sum_probs=46.8
Q ss_pred hhHHHHhccCCceEeeecccC----hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc
Q psy15360 16 YALEELNQTKYDIVGIDWTIE----PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d----~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi 89 (109)
.+...+++.|.+++-.+-.-+ +.+.++.++.. -..-+ +.+++++++.++++.+.+++ ...|.+.|..-
T Consensus 27 a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~------~~~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~ 100 (258)
T PRK07533 27 GCARAFRALGAELAVTYLNDKARPYVEPLAEELDAP------IFLPLDVREPGQLEAVFARIAEEWGRLDFLLHSIAFAP 100 (258)
T ss_pred HHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccc------eEEecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCccCC
Confidence 367778889998775554322 12222222211 11112 47889999999998888766 56666766432
Q ss_pred C-------CCCChHHHHHHH
Q psy15360 90 Y-------PDMDPEHVQVLI 102 (109)
Q Consensus 90 ~-------~~tp~eNi~a~v 102 (109)
+ .+++.|.++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~ 120 (258)
T PRK07533 101 KEDLHGRVVDCSREGFALAM 120 (258)
T ss_pred cccccCCcccCCHHHHHHHH
Confidence 1 245666555544
No 286
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.85 E-value=1.5e+02 Score=21.47 Aligned_cols=69 Identities=9% Similarity=0.070 Sum_probs=41.6
Q ss_pred hHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
+-..+.+.|.+++-.+..-...+..+.+... . |..-...+ +.+++++++.+.++.+.+++ ...|.+.|-
T Consensus 24 ia~~la~~G~~vil~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 24 IAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-L-GSDIVLPCDVAEDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHHCCCEEEEEecchhHHHHHHHHHhc-c-CCceEeecCCCCHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 6777889999987655321122222222111 1 22212223 47899999999998888776 677777774
No 287
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=38.76 E-value=70 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
++++++++.+++.++. +..|.+-||-+-+...+.. +.+.+.
T Consensus 230 ~~~~~~~~~v~~~~~~---~~~i~GfGH~vy~~~DPRa-~~L~~~ 270 (356)
T cd06110 230 GSVDNVAAYVKDKLAN---KEKIMGFGHRVYKTGDPRA-KHLREM 270 (356)
T ss_pred CCHHHHHHHHHHHHhc---CCeecCCCCccCCCCCChH-HHHHHH
Confidence 6677777777777665 5677788999987666653 334333
No 288
>PRK07890 short chain dehydrogenase; Provisional
Probab=38.69 E-value=1.4e+02 Score=20.97 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=40.7
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~g 86 (109)
.+...+.+.|..++.++-.- +.+++.+.+.. ...++....+ +.+++.+++.++++.+.+++ ...|.+.|
T Consensus 20 ~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 20 TLAVRAARAGADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 47777888999888776321 22223222211 1123333333 46788899988888888776 45555554
No 289
>PRK06484 short chain dehydrogenase; Validated
Probab=38.68 E-value=2e+02 Score=22.85 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=54.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|.+++-++-.- .++++++.++.+ ...... +.+++++++..+++.+.+++ .
T Consensus 271 ~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 271 VVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDE-----HLSVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCc-----eeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 444545442 37777888999988776432 233344444332 111112 46788999999998888776 6
Q ss_pred cchhccCCcc--C--CCCChHHHHHHHH
Q psy15360 80 RYIANLGHGI--Y--PDMDPEHVQVLID 103 (109)
Q Consensus 80 g~Il~~gcgi--~--~~tp~eNi~a~v~ 103 (109)
..|.+.|..- . .+.+.+.++.+++
T Consensus 346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~ 373 (520)
T PRK06484 346 VLVNNAGIAEVFKPSLEQSAEDFTRVYD 373 (520)
T ss_pred EEEECCCCcCCCCChhhCCHHHHHHHHH
Confidence 6777777431 1 2455666655543
No 290
>PRK08444 hypothetical protein; Provisional
Probab=38.65 E-value=72 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
|+|+|.+.+++..+... ..+.+-+| .-|..+.|-+..+++++|+
T Consensus 81 s~eeI~~~a~~a~~~G~-~ei~iv~G--~~p~~~~e~y~e~ir~Ik~ 124 (353)
T PRK08444 81 SHEEILEIVKNSVKRGI-KEVHIVSA--HNPNYGYEWYLEIFKKIKE 124 (353)
T ss_pred CHHHHHHHHHHHHHCCC-CEEEEecc--CCCCCCHHHHHHHHHHHHH
Confidence 67999999998877533 23434444 3355588888888888875
No 291
>PRK08278 short chain dehydrogenase; Provisional
Probab=38.47 E-value=1.5e+02 Score=21.37 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=47.6
Q ss_pred hhHHHHhccCCceEeeecccC--------hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhcc
Q psy15360 16 YALEELNQTKYDIVGIDWTIE--------PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANL 85 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d--------~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~ 85 (109)
.+...+.+.|.+++-++...+ +.++.+.+.. .-+++-.... +.+++++++..+++.+.+++ ...|.+.
T Consensus 21 ~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~a 98 (273)
T PRK08278 21 AIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEA--AGGQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNA 98 (273)
T ss_pred HHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 477778889999887764332 2222222211 1122222222 35788999988888887766 5666666
Q ss_pred CCccC---CCCChHHHHHH
Q psy15360 86 GHGIY---PDMDPEHVQVL 101 (109)
Q Consensus 86 gcgi~---~~tp~eNi~a~ 101 (109)
|...+ .+++.+....+
T Consensus 99 g~~~~~~~~~~~~~~~~~~ 117 (273)
T PRK08278 99 SAINLTGTEDTPMKRFDLM 117 (273)
T ss_pred CCcCCCCcccCCHHHHHHH
Confidence 65432 24565555443
No 292
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=38.46 E-value=51 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 66 RKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 66 ~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.++++.+++..-||..=.+|||+ .+-++++.+++++|
T Consensus 54 ~~~~~~l~~Ac~~~GFf~v~nHGI~----~~li~~~~~~~~~F 92 (358)
T PLN02515 54 GEICRKIVEACEDWGIFQVVDHGVD----ANLVADMTRLARDF 92 (358)
T ss_pred HHHHHHHHHHHHHCcEEEEEcCCCC----HHHHHHHHHHHHHH
Confidence 3445566666666788888899986 57788888877764
No 293
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=38.44 E-value=1.4e+02 Score=20.86 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=44.0
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeeecccC-hhhHhhhhcCC------cc---------ccCCCccc----c-cccHH
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIE-PSLARSIIKNK------TL---------QGNLDPCA----L-YASKE 63 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~------~l---------~GNidp~~----L-~gt~e 63 (109)
..++=+.||+....-.+++.|..+..+|..-+ ++.+++..... .. .+.+|-.+ + +-+++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~ 111 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMFLEAK 111 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhhCCHH
Confidence 45778899987766667778888888886322 23333322111 12 23344321 1 12455
Q ss_pred HHHHHHHHHHHHhccccc
Q psy15360 64 KLRKIGTQMAKEFGKSRY 81 (109)
Q Consensus 64 ~i~~~~~~~l~~~~~~g~ 81 (109)
+..+..+++.+.++++|+
T Consensus 112 ~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 112 TIPGLIANMQRCTKPGGY 129 (197)
T ss_pred HHHHHHHHHHHHcCCCcE
Confidence 666666666666677775
No 294
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.42 E-value=51 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=13.5
Q ss_pred CCcccccccHHHHHHHHHHHHHHh
Q psy15360 53 LDPCALYASKEKLRKIGTQMAKEF 76 (109)
Q Consensus 53 idp~~L~gt~e~i~~~~~~~l~~~ 76 (109)
+.|.....+++++.++.+++.+..
T Consensus 103 ~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 103 VTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred eCCcCCCCCHHHHHHHHHHHHhhC
Confidence 344433345666666666666654
No 295
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=38.41 E-value=15 Score=24.64 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=36.8
Q ss_pred ChhhHhhhhcCC-ccccCCCc-c--cccc--cHHHHHHHHHHHHHHhccccchhccCCccCCCC
Q psy15360 36 EPSLARSIIKNK-TLQGNLDP-C--ALYA--SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDM 93 (109)
Q Consensus 36 d~~~~~~~~g~~-~l~GNidp-~--~L~g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~t 93 (109)
|++...+-++.. ..+|++|. . ++.| +++.|++..++.|+. |++-+.|+-| +|
T Consensus 47 ~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~fI~~-----yVlC~~C~sp-dT 104 (125)
T PF01873_consen 47 DPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDKFIKE-----YVLCPECGSP-DT 104 (125)
T ss_dssp SHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHHHHCH-----HSSCTSTSSS-SE
T ss_pred CHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHHHHHH-----EEEcCCCCCC-cc
Confidence 344455556655 67888887 3 3456 578898888888865 9999999955 44
No 296
>KOG1383|consensus
Probab=38.38 E-value=37 Score=27.94 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=37.3
Q ss_pred ecccChhhHhhhhcCC--ccccCCCcccccccHHHHHHHHHHHHHHh--------ccccchhc
Q psy15360 32 DWTIEPSLARSIIKNK--TLQGNLDPCALYASKEKLRKIGTQMAKEF--------GKSRYIAN 84 (109)
Q Consensus 32 d~~~d~~~~~~~~g~~--~l~GNidp~~L~gt~e~i~~~~~~~l~~~--------~~~g~Il~ 84 (109)
|+.+|+.++++....+ ++.|-+. ....|+.|.|++-.+..++.. ..||||..
T Consensus 203 ~~~~D~~k~~~~i~eNti~lv~~~~-~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p 264 (491)
T KOG1383|consen 203 DYRVDPGKVVRMIDENTIMLVGSLP-NFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINP 264 (491)
T ss_pred ceEecHHHHHHHhccceEEEEEEcC-CCCccchhhHHHHHHHHHHHhCCceeecccCcccccc
Confidence 5789999999999887 4555443 355688888888777777722 13888875
No 297
>PF13486 Dehalogenase: Reductive dehalogenase subunit
Probab=38.32 E-value=26 Score=26.76 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHhhhhC
Q psy15360 92 DMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 92 ~tp~eNi~a~v~a~~~~~ 109 (109)
+||+||.+.+-.|+|=|+
T Consensus 138 GTPEEN~~miRaA~r~fG 155 (308)
T PF13486_consen 138 GTPEENLRMIRAAARFFG 155 (308)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 899999998888877553
No 298
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.24 E-value=1.7e+02 Score=22.32 Aligned_cols=73 Identities=5% Similarity=0.038 Sum_probs=42.0
Q ss_pred ceEeeecccChhhHhhhhcCCccccCCCcccccc---cHHHHHHHHHHHHHHhcc--------ccchhccCCccC-----
Q psy15360 27 DIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYA---SKEKLRKIGTQMAKEFGK--------SRYIANLGHGIY----- 90 (109)
Q Consensus 27 d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~g---t~e~i~~~~~~~l~~~~~--------~g~Il~~gcgi~----- 90 (109)
=++|+|+..|++.+++.+.. +++-.++=| +-|+-.+.++++.+.+.. =|.|=+...++.
T Consensus 77 V~lHLDHg~~~e~i~~Ai~~-----GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~ 151 (284)
T PRK09195 77 LALHLDHHEKFDDIAQKVRS-----GVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEAD 151 (284)
T ss_pred EEEECCCCCCHHHHHHHHHc-----CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCccccccc
Confidence 35688888887777665532 454444312 456766777777776542 145433332321
Q ss_pred -CCCChHHHHHHHHH
Q psy15360 91 -PDMDPEHVQVLIDA 104 (109)
Q Consensus 91 -~~tp~eNi~a~v~a 104 (109)
.-|.+|..+.|++.
T Consensus 152 ~~~T~peea~~Fv~~ 166 (284)
T PRK09195 152 ALYTDPAQAREFVEA 166 (284)
T ss_pred ccCCCHHHHHHHHHH
Confidence 14778888888764
No 299
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=38.22 E-value=97 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=9.2
Q ss_pred hHHHHhccCCceEeeec
Q psy15360 17 ALEELNQTKYDIVGIDW 33 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~ 33 (109)
+.+.+ +.|++.+.+.+
T Consensus 17 ~~~~l-~~~v~~iev~~ 32 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGT 32 (206)
T ss_pred HHHHc-ccCeeEEEeCC
Confidence 44444 56677776653
No 300
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=38.09 E-value=1.3e+02 Score=21.98 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=48.1
Q ss_pred HhccCCceEeeecccChhhHhhhhcC---C-ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCccCC-CCCh
Q psy15360 21 LNQTKYDIVGIDWTIEPSLARSIIKN---K-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP-DMDP 95 (109)
Q Consensus 21 l~~~g~d~~~id~~~d~~~~~~~~g~---~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~-~tp~ 95 (109)
..+.|+|.+-+.+..+++..++.... . ...|++.. .|.++..+.+.++++... .=++.|-.+.. .-|.
T Consensus 165 a~~~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~----~~~~~~~~~i~~~~~aGa---~Gia~g~~i~~~~dp~ 237 (258)
T TIGR01949 165 GAELGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKT----NSDREFLQMIKDAMEAGA---AGVAVGRNIFQHDDPV 237 (258)
T ss_pred HHHHCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCC----CCHHHHHHHHHHHHHcCC---cEEehhhHhhcCCCHH
Confidence 44789999988887666666555431 1 23355543 145677777788887632 22344444432 4577
Q ss_pred HHHHHHHHHhhh
Q psy15360 96 EHVQVLIDAIHD 107 (109)
Q Consensus 96 eNi~a~v~a~~~ 107 (109)
+.++++.+.+|+
T Consensus 238 ~~~~~l~~~i~~ 249 (258)
T TIGR01949 238 GITKAVCKIVHE 249 (258)
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 301
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.81 E-value=75 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=27.9
Q ss_pred hhHHHHhccCC--ceEeeeccc-------C-hhhHhhhhcCC-ccccCCC
Q psy15360 16 YALEELNQTKY--DIVGIDWTI-------E-PSLARSIIKNK-TLQGNLD 54 (109)
Q Consensus 16 ~~l~~l~~~g~--d~~~id~~~-------d-~~~~~~~~g~~-~l~GNid 54 (109)
.....|.++|+ |++-+|-.. + +++.|+.+++. .+.||+-
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 46777888955 999996432 2 57778888766 7777765
No 302
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.80 E-value=1.3e+02 Score=20.33 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=9.5
Q ss_pred cCCCCChHHHHHHHH
Q psy15360 89 IYPDMDPEHVQVLID 103 (109)
Q Consensus 89 i~~~tp~eNi~a~v~ 103 (109)
.+|+||++.+..+++
T Consensus 115 F~pgt~~~~iv~~l~ 129 (134)
T TIGR01501 115 FAPGTPPEVVIADLK 129 (134)
T ss_pred ECcCCCHHHHHHHHH
Confidence 356677777666554
No 303
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=37.42 E-value=49 Score=25.46 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.++++.+++..-||..=.+|||+. +-+.++.+++++|
T Consensus 27 ~~~~~l~~Ac~~~GFf~l~nHGI~~----~l~~~~~~~~~~F 64 (332)
T PLN03002 27 HSVASLKQACLDCGFFYVINHGINE----EFMDDVFEQSKKF 64 (332)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCH----HHHHHHHHHHHHH
Confidence 4555666666667888888899864 6788888887765
No 304
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=37.18 E-value=72 Score=24.91 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=28.8
Q ss_pred cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 57 ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 57 ~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
.|.||||+|.+..+++.+. +=..|||+. .+ ..|.++.|-+.|
T Consensus 302 ~lvGspe~Vae~l~~~~~~-Gvd~fil~~---~~---~~e~~~~~g~~V 343 (378)
T PRK00719 302 ALVGDPPTVAARIKEYAAL-GIDTFILSG---YP---HLEEAYRVAELL 343 (378)
T ss_pred ceecCHHHHHHHHHHHHHc-CCCEEEEcC---CC---CHHHHHHHHHHh
Confidence 5789999999999888865 335788852 33 346666555443
No 305
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=37.12 E-value=98 Score=23.11 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=42.3
Q ss_pred hhHHHHhccCCce-EeeecccChhhHhhhhcCCc--c-ccCCCcccccccHHHHHHHHHHHHHHhc---cccchhccCCc
Q psy15360 16 YALEELNQTKYDI-VGIDWTIEPSLARSIIKNKT--L-QGNLDPCALYASKEKLRKIGTQMAKEFG---KSRYIANLGHG 88 (109)
Q Consensus 16 ~~l~~l~~~g~d~-~~id~~~d~~~~~~~~g~~~--l-~GNidp~~L~gt~e~i~~~~~~~l~~~~---~~g~Il~~gcg 88 (109)
.++..+.+.|+.+ +-+|...+--++.+.+|-.. | .|..--. + +.++..++..++.+... .-|.-++.|||
T Consensus 114 ~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a--~-~~~~~~~el~~i~~aa~~a~~~GL~VnAGHg 190 (234)
T cd00003 114 PIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANA--Y-DKAEREAELERIAKAAKLARELGLGVNAGHG 190 (234)
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcC--C-CchhHHHHHHHHHHHHHHHHHcCCEEecCCC
Confidence 3566677777753 23455444444455555441 1 3322221 1 22344445555555432 36889999999
Q ss_pred cCCCCChHHHHHHH
Q psy15360 89 IYPDMDPEHVQVLI 102 (109)
Q Consensus 89 i~~~tp~eNi~a~v 102 (109)
+. .+|+..+.
T Consensus 191 Ln----y~Nv~~i~ 200 (234)
T cd00003 191 LN----YENVKPIA 200 (234)
T ss_pred CC----HHHHHHHH
Confidence 85 45666554
No 306
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.11 E-value=1.7e+02 Score=21.65 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=18.9
Q ss_pred CcEEEeecch------hhhHHHHhccCCceEee
Q psy15360 5 VPMTIFAKGA------HYALEELNQTKYDIVGI 31 (109)
Q Consensus 5 ~pvi~~~~g~------~~~l~~l~~~g~d~~~i 31 (109)
.-+.|+..|- ..++..|.+.|+|++.+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iEl 43 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALEL 43 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4455667773 24677788899999866
No 307
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=37.09 E-value=74 Score=24.97 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-++|+|-++++..-+.....--+.+.|.+ .+-..+.|.++++++++
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~--~~~~~~~i~~~v~~Vk~ 129 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRG--PGRDMEEVVEAIKAVKE 129 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccC--CCccHHHHHHHHHHHHH
Confidence 47888999988776653223447778887 45777888888888873
No 308
>PRK14429 acylphosphatase; Provisional
Probab=37.06 E-value=51 Score=20.48 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.2
Q ss_pred ccHHHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQM 72 (109)
Q Consensus 60 gt~e~i~~~~~~~ 72 (109)
|++++|++-.+.+
T Consensus 48 G~~~~i~~f~~~l 60 (90)
T PRK14429 48 GSDPAVDNLIAWC 60 (90)
T ss_pred eCHHHHHHHHHHH
Confidence 5555554444333
No 309
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=36.97 E-value=1.3e+02 Score=20.69 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHhccCCceEeeec-ccChhhHhhhh
Q psy15360 18 LEELNQTKYDIVGIDW-TIEPSLARSII 44 (109)
Q Consensus 18 l~~l~~~g~d~~~id~-~~d~~~~~~~~ 44 (109)
++...+.|++++|+.. .++...+++.+
T Consensus 66 ~~la~~~g~~GvHl~~~~~~~~~~r~~~ 93 (196)
T TIGR00693 66 VDLALALGADGVHLGQDDLPASEARALL 93 (196)
T ss_pred HHHHHHcCCCEEecCcccCCHHHHHHhc
Confidence 4445578888888843 34555555444
No 310
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=36.82 E-value=41 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=19.3
Q ss_pred cCC-CcccccccHHHHHHHHHHHHHHh
Q psy15360 51 GNL-DPCALYASKEKLRKIGTQMAKEF 76 (109)
Q Consensus 51 GNi-dp~~L~gt~e~i~~~~~~~l~~~ 76 (109)
+++ .|..|.|||+|+++.--+.+...
T Consensus 41 ~~l~~Pl~L~gTp~ELD~gF~~ai~~~ 67 (104)
T TIGR03741 41 GALTKPLVLTGTPAELDAGFAGALGQY 67 (104)
T ss_pred ccccCCeeeccCHHHHHHHHHHHHHhH
Confidence 444 46678899999998877776653
No 311
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=36.81 E-value=1.5e+02 Score=21.77 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=44.2
Q ss_pred hHHHHhccCCceEeeecc--------------cChhhHhhhhc-------C--C-ccccCCCccccc-ccHHHHHHHHHH
Q psy15360 17 ALEELNQTKYDIVGIDWT--------------IEPSLARSIIK-------N--K-TLQGNLDPCALY-ASKEKLRKIGTQ 71 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~--------------~d~~~~~~~~g-------~--~-~l~GNidp~~L~-gt~e~i~~~~~~ 71 (109)
....+.+.|++++.++.. ++.+|..+++. + . .|.-.-|....- .+.++..++++.
T Consensus 89 ~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~a 168 (243)
T cd00377 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHH
Confidence 456677899999999422 24444444432 2 2 333333332221 245666666677
Q ss_pred HHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 72 MAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 72 ~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+.+.....-||-++- ..|.++++.++.
T Consensus 169 y~~AGAD~v~v~~~~-------~~~~~~~~~~~~ 195 (243)
T cd00377 169 YAEAGADGIFVEGLK-------DPEEIRAFAEAP 195 (243)
T ss_pred HHHcCCCEEEeCCCC-------CHHHHHHHHhcC
Confidence 777643344543332 567777777653
No 312
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=36.71 E-value=29 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHHHhc-----cccchhccCCccCCCCChHHH
Q psy15360 60 ASKEKLRKIGTQMAKEFG-----KSRYIANLGHGIYPDMDPEHV 98 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~-----~~g~Il~~gcgi~~~tp~eNi 98 (109)
...|+|-..+|++||..+ ..||-..+=+-+++++.+||+
T Consensus 211 ~ere~iG~~~KrlID~gR~~~L~~~g~~a~Lv~Yv~~~vT~EN~ 254 (259)
T PF05206_consen 211 EEREEIGRKCKRLIDYGRVLYLREKGFNAELVKYVDRDVTPENV 254 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEECCCCCChhHe
Confidence 456899999999999965 367777777889999999997
No 313
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=36.66 E-value=33 Score=19.72 Aligned_cols=47 Identities=17% Similarity=0.373 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCcc-CCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGI-YPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi-~~~tp~eNi~a~v~a~~~~ 108 (109)
|++..+ ...++.+.++.+..=|.+.-++ .++.|.|++.++.+..++|
T Consensus 22 ~~~~l~-~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 22 SAEQLR-ALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EHHHHH-HHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CHHHHH-HHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 444443 3455666666555667777775 4689999999999888765
No 314
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.65 E-value=43 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.1
Q ss_pred hhHHHHhccCCceEeeeccc-------C-hhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI-------E-PSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-------d-~~~~~~~~g~~-~l~GNidp 55 (109)
..+..|.+.|++++-+|-.- + +++.|+.+++. .+.||+.+
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t 278 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVT 278 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCC
Confidence 57777889999999888432 2 67788888877 77889876
No 315
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=36.64 E-value=1.7e+02 Score=22.09 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=49.0
Q ss_pred CCCcEEEeec-c-----hhhhHHHHhccCC--ceEeeecccChhhHhhhhcCCcccc-CCCcccccccHHHHHHHHHHHH
Q psy15360 3 NDVPMTIFAK-G-----AHYALEELNQTKY--DIVGIDWTIEPSLARSIIKNKTLQG-NLDPCALYASKEKLRKIGTQMA 73 (109)
Q Consensus 3 ~~~pvi~~~~-g-----~~~~l~~l~~~g~--d~~~id~~~d~~~~~~~~g~~~l~G-Nidp~~L~gt~e~i~~~~~~~l 73 (109)
-++|+|+|+= . +..+++.+.+.|+ +-+-+|+. +..-.+..+......| -+-|.- .|+++ +-+++
T Consensus 126 ~dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~-N~etv~~vld~e~~vGlTvqPgK--lt~~e----AveIV 198 (254)
T COG1099 126 LDVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV-NEETVDEVLDEEFYVGLTVQPGK--LTVEE----AVEIV 198 (254)
T ss_pred cCCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhcc-cHHHHHHHHhccceEEEEecCCc--CCHHH----HHHHH
Confidence 3689999943 2 2347777776766 44556763 4454554554433333 223311 13333 34556
Q ss_pred HHhccccchhccCCccCCCCC
Q psy15360 74 KEFGKSRYIANLGHGIYPDMD 94 (109)
Q Consensus 74 ~~~~~~g~Il~~gcgi~~~tp 94 (109)
...+...||+|+.++-.+.-|
T Consensus 199 ~ey~~~r~ilnSD~~s~~sd~ 219 (254)
T COG1099 199 REYGAERIILNSDAGSAASDP 219 (254)
T ss_pred HHhCcceEEEecccccccccc
Confidence 665667899999999765433
No 316
>PRK07094 biotin synthase; Provisional
Probab=36.62 E-value=1.8e+02 Score=21.79 Aligned_cols=14 Identities=14% Similarity=-0.059 Sum_probs=7.2
Q ss_pred cHHHHHHHHHHHHH
Q psy15360 61 SKEKLRKIGTQMAK 74 (109)
Q Consensus 61 t~e~i~~~~~~~l~ 74 (109)
+.+++.+.++.+-+
T Consensus 163 s~~~~~~~i~~l~~ 176 (323)
T PRK07094 163 SFENRIACLKDLKE 176 (323)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 317
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=36.54 E-value=51 Score=23.72 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=37.9
Q ss_pred hhhHhhhhcCC-ccccCCCcc--cccc--cHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 37 PSLARSIIKNK-TLQGNLDPC--ALYA--SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 37 ~~~~~~~~g~~-~l~GNidp~--~L~g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
.....+.++.. ..+|++|-. ++.| +++++++..++.|+. |++-+.|+- |+|..
T Consensus 54 ~~~~~ky~~~ELgt~~~~~~~~~ii~G~~~~~~i~~~l~~yi~~-----yV~C~~C~~-pdT~l 111 (201)
T PRK12336 54 PDHLMKFLQRELGTAGKIEGGRAVFNGKFTEEDIQAAIDAYVDE-----YVICSECGL-PDTRL 111 (201)
T ss_pred HHHHHHHHHHHhCCcceecCCEEEEEeeeCHHHHHHHHHHHHHh-----eEECCCCCC-CCcEE
Confidence 34445556666 678888865 3456 688999999999976 888888887 45543
No 318
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=36.51 E-value=62 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
+++++++.+++.++. +.-|.+-||.+-....|.
T Consensus 293 ~~~~~~~~i~~~l~~---g~~i~GfGHrvYk~~DPR 325 (428)
T cd06106 293 TDQDIRDYLWKTLKS---GRVVPGYGHAVLRKPDPR 325 (428)
T ss_pred CHHHHHHHHHHHHhC---CCcccCCCCCCCCCCCCC
Confidence 457777777777764 667889999998765554
No 319
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=36.41 E-value=88 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
-|+|+|.++++++.+. +-..+.|..|. .|..+.+-+..+++++++.
T Consensus 70 ls~eeI~e~~~~~~~~-G~~~i~l~gG~--~p~~~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 70 LSLEEIAERAAEAWKA-GATEVCIQGGI--HPDLDGDFYLDILRAVKEE 115 (343)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEeCC--CCCCCHHHHHHHHHHHHHH
Confidence 3788888888877664 22334444443 3566778888888887754
No 320
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=36.37 E-value=85 Score=23.91 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-++|+|.++++++.+. +-..+.|..| ..|..+.+-+..+++++++
T Consensus 72 ls~eei~~~~~~~~~~-G~~~i~l~gG--~~p~~~~~~~~~li~~Ik~ 116 (340)
T TIGR03699 72 LSVEEILQKIEELVAY-GGTQILLQGG--VNPDLGLDYYEDLFRAIKA 116 (340)
T ss_pred CCHHHHHHHHHHHHHc-CCcEEEEecC--CCCCCCHHHHHHHHHHHHH
Confidence 4678888888776443 2234555444 3556777878778877765
No 321
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=36.28 E-value=46 Score=27.25 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=41.2
Q ss_pred hccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 22 NQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 22 ~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
....+|...+..|+ |+..|.+.+.++.+.=++...+.-||.+...+..+ .+++.+.. |-.|.++||+.
T Consensus 337 ~~~~Id~~~IGSCTNgr~eDl~~aA~ilkG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~ 411 (471)
T PRK12466 337 AGIPIDRVFIGSCTNGRIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSM 411 (471)
T ss_pred CCceEEEEEEeccCCCChHHHHHHHHHHcCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCcccc
Confidence 34556767777666 67778887766544444543222488655444444 34555554 66788999985
No 322
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.23 E-value=1.6e+02 Score=20.97 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=47.1
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC---
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY--- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~--- 90 (109)
.+-..+.+.|.+++-.+-.....+..+.+. .+++...-+ +.+++++++.++++.+.+++ ...|.|.|-.-+
T Consensus 24 a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 99 (252)
T PRK06079 24 GCAQAIKDQGATVIYTYQNDRMKKSLQKLV----DEEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAYAKKEEL 99 (252)
T ss_pred HHHHHHHHCCCEEEEecCchHHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEcccccccccc
Confidence 377778889999875543211122211111 112222223 46889999999998888776 567777764321
Q ss_pred ----CCCChHHHHHHH
Q psy15360 91 ----PDMDPEHVQVLI 102 (109)
Q Consensus 91 ----~~tp~eNi~a~v 102 (109)
.+++.|..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~ 115 (252)
T PRK06079 100 GGNVTDTSRDGYALAQ 115 (252)
T ss_pred cCCcccCCHHHHHHHh
Confidence 245666554443
No 323
>KOG2918|consensus
Probab=36.13 E-value=34 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=26.2
Q ss_pred cccH---HHHHHHHHHHHHHhccccchhccCCccCC
Q psy15360 59 YASK---EKLRKIGTQMAKEFGKSRYIANLGHGIYP 91 (109)
Q Consensus 59 ~gt~---e~i~~~~~~~l~~~~~~g~Il~~gcgi~~ 91 (109)
.|+. -.|+..+++.|++..+.--|+|+|||.-+
T Consensus 65 RGy~~R~~aI~~~v~~Fl~~~~~~~qivnLGcG~D~ 100 (335)
T KOG2918|consen 65 RGYWARTMAIRHAVRAFLEQTDGKKQIVNLGAGFDT 100 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEEcCCCccc
Confidence 3654 56889999999987667789999999754
No 324
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=36.06 E-value=77 Score=24.98 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=30.6
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|.-+-. +| .++++++++.+++.++. +.-|.+-||.+-....|.
T Consensus 214 plHGGA~e~v~~~l~~i~~~~~~~~~i~~~~~~---~~~i~GFGHrvyk~~DPR 264 (366)
T cd06117 214 PKHGGANEVAFEIQQRYESADEAEADIRRRVEN---KEVVIGFGHPVYTIADPR 264 (366)
T ss_pred CccCchHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCcccCCCCCCCCCCCch
Confidence 555654432 23 36777777777766654 667889999998766654
No 325
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=36.04 E-value=1.2e+02 Score=23.96 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=33.9
Q ss_pred CCcccccccHHHHHHHHHHHHHHhcc---ccch-hcc-CCccCCCCChHHHHHHHHHhhhhC
Q psy15360 53 LDPCALYASKEKLRKIGTQMAKEFGK---SRYI-ANL-GHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 53 idp~~L~gt~e~i~~~~~~~l~~~~~---~g~I-l~~-gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
++|.....+.++..+++++.+++... ++.| .+. .|+ +...+.|-++++++.+++++
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~~~~e~l~~~~~~A~~~g 227 (451)
T PRK08203 167 LPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCS-PFSVSRELMRESAALARRLG 227 (451)
T ss_pred CCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC-CCcCCHHHHHHHHHHHHHcC
Confidence 33433334667778888888887531 1221 111 233 34667899999999998864
No 326
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=35.75 E-value=39 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=20.8
Q ss_pred ccchhccCCccC--CCCChHHHHHHHHHhhhh
Q psy15360 79 SRYIANLGHGIY--PDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 79 ~g~Il~~gcgi~--~~tp~eNi~a~v~a~~~~ 108 (109)
.-+|+...|++. |....|.++.+++.+.+|
T Consensus 20 ~~~~~a~Dh~~l~gp~~~~~d~~~~~~~a~~~ 51 (267)
T PRK07226 20 RTVIVPMDHGVSHGPIDGLVDIRDTVNKVAEG 51 (267)
T ss_pred CEEEEECCCccccCCCcCcCCHHHHHHHHHhc
Confidence 456777777766 567777777777776654
No 327
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=35.74 E-value=2.4e+02 Score=24.59 Aligned_cols=93 Identities=12% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCcEEEeecch--hhhHHHHhccCCceEeeecccChhh-HhhhhcCCc-cccCCCcccccccHHHHHHHHHHHHHHhccc
Q psy15360 4 DVPMTIFAKGA--HYALEELNQTKYDIVGIDWTIEPSL-ARSIIKNKT-LQGNLDPCALYASKEKLRKIGTQMAKEFGKS 79 (109)
Q Consensus 4 ~~pvi~~~~g~--~~~l~~l~~~g~d~~~id~~~d~~~-~~~~~g~~~-l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~ 79 (109)
+++++..+.-- ...++.+++. +|.+++... |+.. ..-.-.+.. +....| ....+|.+.++++++.+++.
T Consensus 662 ~~~vg~mIEtp~av~~~d~Ia~~-vDfisIGtn-DLtq~~lg~dR~n~~~~~~~~-----~~hPaV~~~i~~vi~~a~~~ 734 (782)
T TIGR01418 662 GLEVYVMCEVPSNALLADEFAKE-FDGFSIGSN-DLTQLTLGVDRDSGLVAHLFD-----ERNPAVLRLIEMAIKAAKEH 734 (782)
T ss_pred CcEEEEEECcHHHHHHHHHHHHh-CCEEEECch-HHHHHHhCccCCchhhcccCC-----CCCHHHHHHHHHHHHHHHhc
Confidence 35565555543 2467788877 999999863 5553 111111111 111111 13467888888888888765
Q ss_pred cchhccCCccCCCCChHHHHHHHHH
Q psy15360 80 RYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 80 g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
|--++. |+-.....++.+..+++.
T Consensus 735 g~~vgi-cge~~~~~p~~~~~l~~~ 758 (782)
T TIGR01418 735 GKKVGI-CGQAPSDYPEVVEFLVEE 758 (782)
T ss_pred CCeEEE-eCCCCCCCHHHHHHHHHc
Confidence 444555 665444456777776654
No 328
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.62 E-value=1.6e+02 Score=20.70 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=48.3
Q ss_pred cEEEeecch----hhhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGA----HYALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~----~~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
++++..+++ ..+...+.+.|.+++.++..- ...++.+.+.. .-+++..... +.+++.+++.+.++.+..++
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--AGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--cCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 345555443 247788889999988765422 12233333321 1111111112 35677888877777766555
Q ss_pred ccchhccCCccC---CCCChHHHHH
Q psy15360 79 SRYIANLGHGIY---PDMDPEHVQV 100 (109)
Q Consensus 79 ~g~Il~~gcgi~---~~tp~eNi~a 100 (109)
...|.+.|...+ .+.|.+..+.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~ 110 (262)
T PRK13394 86 DILVSNAGIQIVNPIENYSFADWKK 110 (262)
T ss_pred CEEEECCccCCCCchhhCCHHHHHH
Confidence 455666654321 2445555443
No 329
>PRK12939 short chain dehydrogenase; Provisional
Probab=35.49 E-value=1.5e+02 Score=20.54 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+...+.+.|..++.++-.-+ ..+..+.+. ...+++..... +.+++.+++...++.+.+++ ..+|.+.|-
T Consensus 22 ~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 22 AFAEALAEAGATVAFNDGLAAEARELAAALE--AAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 477778889999887753211 122222221 11123333222 45778888877777776665 556666664
No 330
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=35.47 E-value=41 Score=24.47 Aligned_cols=30 Identities=17% Similarity=-0.063 Sum_probs=22.5
Q ss_pred HHHHhccCCceEeeecc-cChhhHhhhhcCC
Q psy15360 18 LEELNQTKYDIVGIDWT-IEPSLARSIIKNK 47 (109)
Q Consensus 18 l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~ 47 (109)
++.-.++|+|++|+.+. .++.++++.++..
T Consensus 80 ~dlA~~~~adGVHLg~~d~~~~~~r~~~~~~ 110 (221)
T PRK06512 80 SRIAGRVKADGLHIEGNLAALAEAIEKHAPK 110 (221)
T ss_pred HHHHHHhCCCEEEECccccCHHHHHHhcCCC
Confidence 55555789999999763 5788888887643
No 331
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=35.46 E-value=2.2e+02 Score=23.87 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=54.2
Q ss_pred hhHHHHhccCCceEeeecccChhhHh---hhhcC---C--ccccCCC-----cc-ccc-ccHHHHHHHHHHHHHHhcccc
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLAR---SIIKN---K--TLQGNLD-----PC-ALY-ASKEKLRKIGTQMAKEFGKSR 80 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~---~~~g~---~--~l~GNid-----p~-~L~-gt~e~i~~~~~~~l~~~~~~g 80 (109)
..+..+.+.+++++.+.-..++..+. +.+.. . .+.-|-- .. ..+ .+|+...+.+++.++. |-
T Consensus 188 ~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~---Ga 264 (612)
T PRK08645 188 EALKELVAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ---GV 264 (612)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh---CC
Confidence 36666777888988887654343332 22222 2 2333421 11 222 5788899999998887 66
Q ss_pred chhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-|++--|| |.++.|+++-++++.
T Consensus 265 ~iiGGCCg----t~P~hI~~la~~l~~ 287 (612)
T PRK08645 265 RLIGGCCG----TTPEHIRAMARALKG 287 (612)
T ss_pred CEEeEecC----CCHHHHHHHHHHhcc
Confidence 77888886 567899999887754
No 332
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=35.36 E-value=53 Score=24.90 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
+.||||+|.++.+++.+. +-..++|....+ + ...++++.|-+.
T Consensus 280 i~Gtpe~v~~~l~~~~~~-Gvd~~~l~~~~~--~-~~~~~i~lfa~e 322 (325)
T TIGR03555 280 IAGTPDDVIEKIEELLKA-GVTQVVAGSPIG--P-DKEKAIKLIGKE 322 (325)
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEecCCCC--C-CHHHHHHHHHhh
Confidence 469999999999987763 434566643222 2 245666666543
No 333
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=35.21 E-value=82 Score=24.65 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.5
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
.+.|+-+-. +| .++++++++.+++.++. +..|.+-||.+-....|
T Consensus 202 plHGGA~e~v~~~l~ei~~~~~~~~~v~~~l~~---~~~i~GfGH~vyk~~DP 251 (349)
T cd06109 202 PLHGGAPGPVLDMLDAIGTPENAEAWLREALAR---GERLMGFGHRVYRVRDP 251 (349)
T ss_pred CcccChHHHHHHHHHHhCChhhHHHHHHHHHHc---CCeecCCCCCCCCCCCc
Confidence 566666543 23 36778887777777664 66888999999866555
No 334
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=35.16 E-value=29 Score=28.19 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=43.3
Q ss_pred ecccChhhHhhhhcCC-ccccCCCcccc--cccHHHHHHHHHHHHHHhcc-ccchhccC
Q psy15360 32 DWTIEPSLARSIIKNK-TLQGNLDPCAL--YASKEKLRKIGTQMAKEFGK-SRYIANLG 86 (109)
Q Consensus 32 d~~~d~~~~~~~~g~~-~l~GNidp~~L--~gt~e~i~~~~~~~l~~~~~-~g~Il~~g 86 (109)
++.=++.+.-+....+ .+..|+.+..| |||.|.|.++-.++++...+ +-.|++-.
T Consensus 165 ~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d 223 (451)
T COG0770 165 NHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNAD 223 (451)
T ss_pred CCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECc
Confidence 4445788888888888 99999999865 79988898888899988776 45666655
No 335
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=35.12 E-value=68 Score=21.58 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=22.1
Q ss_pred ccChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhc
Q psy15360 34 TIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 34 ~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~ 77 (109)
.|.+.||++++ |+++ --++|+|.+.-+++.+.=.
T Consensus 54 ~Mtl~EA~~IL-------nv~~---~~~~eeI~k~y~~Lf~~Nd 87 (127)
T PF03656_consen 54 GMTLDEARQIL-------NVKE---ELSREEIQKRYKHLFKAND 87 (127)
T ss_dssp ---HHHHHHHH-------T--G-----SHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHc-------CCCC---ccCHHHHHHHHHHHHhccC
Confidence 57888998888 6666 3478999999999988744
No 336
>PRK07035 short chain dehydrogenase; Provisional
Probab=35.11 E-value=1.6e+02 Score=20.65 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=49.3
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-c
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-S 79 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~ 79 (109)
+++..+++. .+...+.+.|.+++.++-.. .+++..+.+.. .-+++..... +.+.+++++.++++.+.+++ .
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 87 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDALFAHIRERHGRLD 87 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 455555442 47777888899998887432 12222222211 1011111112 46788898888888887765 4
Q ss_pred cchhccCCcc----CCCCChHHHHHH
Q psy15360 80 RYIANLGHGI----YPDMDPEHVQVL 101 (109)
Q Consensus 80 g~Il~~gcgi----~~~tp~eNi~a~ 101 (109)
..|.+.|... ..+.+.+..+..
T Consensus 88 ~li~~ag~~~~~~~~~~~~~~~~~~~ 113 (252)
T PRK07035 88 ILVNNAAANPYFGHILDTDLGAFQKT 113 (252)
T ss_pred EEEECCCcCCCCCCcccCCHHHHHHH
Confidence 4444554211 124555544433
No 337
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=35.09 E-value=88 Score=21.25 Aligned_cols=49 Identities=12% Similarity=0.258 Sum_probs=32.1
Q ss_pred ccCCCcc-c----ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhh
Q psy15360 50 QGNLDPC-A----LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 50 ~GNidp~-~----L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
.|||... + ..||+.-|++.+.++.... .+|... +..|.+.-..|++.++
T Consensus 90 lggi~n~~LY~~s~~GTK~lIe~Yi~ev~~~L---~~l~~~-----~~~~~~~kl~ff~~~~ 143 (145)
T PF11815_consen 90 LGGIGNPRLYSHSYSGTKRLIEEYIDEVVRCL---EYLAES-----PELSDEEKLSFFQETR 143 (145)
T ss_pred ccccCCHHHHHHccccchHHHHHHHHHHHHHH---HHHHhC-----cCCCHHHHHHHHHHHh
Confidence 5666543 2 2499988888888887773 355555 6666666666665543
No 338
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=34.76 E-value=1.7e+02 Score=20.81 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=44.3
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
.+++..+++. .+...+.+.|.+++-++-.-+ +++.++..+. ++..... +.+++.+.+.++++.+.+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGD-----AVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCC-----ceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4555555542 477788899999887764321 2222222222 2222222 36778898888888888765
Q ss_pred ccchhccC
Q psy15360 79 SRYIANLG 86 (109)
Q Consensus 79 ~g~Il~~g 86 (109)
...|.+.|
T Consensus 81 d~li~~Ag 88 (262)
T TIGR03325 81 DCLIPNAG 88 (262)
T ss_pred CEEEECCC
Confidence 45555555
No 339
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=34.76 E-value=1.6e+02 Score=20.67 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=45.9
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|.+++-.+-..+ +.+..+.+.+. .+.+..... +.+++.+++.+.++.+.+++ ...|.+.|...+
T Consensus 24 ~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 101 (254)
T PRK08085 24 LLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHP 101 (254)
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 477778889999887764321 12222222110 112222222 46788899888888887766 566666664321
Q ss_pred -CCCChHHHHHH
Q psy15360 91 -PDMDPEHVQVL 101 (109)
Q Consensus 91 -~~tp~eNi~a~ 101 (109)
.+.+.+..+.+
T Consensus 102 ~~~~~~~~~~~~ 113 (254)
T PRK08085 102 FTEFPEQEWNDV 113 (254)
T ss_pred hhhCCHHHHHHH
Confidence 24555544433
No 340
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=34.72 E-value=1.7e+02 Score=21.75 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=43.1
Q ss_pred cEEEeecchhhhHHHHhccCCceEeeecccC-hhhHhhhhcC---C--cc---------ccCCCccc----c-cccHHHH
Q psy15360 6 PMTIFAKGAHYALEELNQTKYDIVGIDWTIE-PSLARSIIKN---K--TL---------QGNLDPCA----L-YASKEKL 65 (109)
Q Consensus 6 pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~---~--~l---------~GNidp~~----L-~gt~e~i 65 (109)
.++=..||+....-.+++.|.++..+|..-. +..+++.... . .. .+.+|-.+ | +-+++++
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~~~~~ 202 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLNRERI 202 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCCHHHH
Confidence 5778899987655556777899998886422 2333333221 1 12 23445431 2 2245666
Q ss_pred HHHHHHHHHHhccccc
Q psy15360 66 RKIGTQMAKEFGKSRY 81 (109)
Q Consensus 66 ~~~~~~~l~~~~~~g~ 81 (109)
.+-.+++.+..+++|+
T Consensus 203 ~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 203 PAIIKNMQEHTNPGGY 218 (287)
T ss_pred HHHHHHHHHhcCCCcE
Confidence 6666666666666665
No 341
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=34.60 E-value=43 Score=29.42 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=29.2
Q ss_pred HHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhh
Q psy15360 68 IGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 68 ~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~ 106 (109)
.+..+++.+++|||.-+.||-+.-.+..|-++.+.++.+
T Consensus 641 nVq~Iae~~GGGGH~~AAGaqi~~~tlee~~~~L~~~I~ 679 (838)
T PRK14538 641 NVQTIMEQMEGGGHLNSAATQIKGTNIKTVTQTLKHLLK 679 (838)
T ss_pred CHHHHHHHhCCCccHhhheEEeCCCCHHHHHHHHHHHHH
Confidence 346788888889999999999885566666666666653
No 342
>PRK06801 hypothetical protein; Provisional
Probab=34.56 E-value=78 Score=24.09 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCcEEEeec-chh-hhHHHHhccCCceEeeecccCh---hhHhhhhcCCccccCCC-ccccc-ccHHHHHHHHHHHHHHh
Q psy15360 4 DVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEP---SLARSIIKNKTLQGNLD-PCALY-ASKEKLRKIGTQMAKEF 76 (109)
Q Consensus 4 ~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~---~~~~~~~g~~~l~GNid-p~~L~-gt~e~i~~~~~~~l~~~ 76 (109)
++|+..|.+ |.. +-+....++|++-+.+...+-. ...++.+... -..+| +..++ ...+.+++.+++.|+.+
T Consensus 203 ~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 280 (286)
T PRK06801 203 GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQRMTHR--HAIYDEFAELLLGIEEAISDTVAQQMRIF 280 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHHhC--CcccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589988855 444 4677788999999999754321 1123333221 11253 33343 44578999999999886
Q ss_pred c
Q psy15360 77 G 77 (109)
Q Consensus 77 ~ 77 (109)
+
T Consensus 281 g 281 (286)
T PRK06801 281 G 281 (286)
T ss_pred C
Confidence 5
No 343
>PRK12937 short chain dehydrogenase; Provisional
Probab=34.52 E-value=1.6e+02 Score=20.43 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred hhHHHHhccCCceEeeeccc--ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTI--EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~g 86 (109)
.+...+.+.|.+++-+.... ...+..+.+. ..-+++..... +.+++++++..+++.+.+++ ...|.+.|
T Consensus 20 ~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 20 AIARRLAADGFAVAVNYAGSAAAADELVAEIE--AAGGRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 47777888999876543211 1122222221 11122222222 45788899999988888765 45555554
No 344
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=34.50 E-value=2.4e+02 Score=23.38 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHHHHhcccc-ch-hccCCc-cCCCCChHHHHHHHHHhhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSR-YI-ANLGHG-IYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g-~I-l~~gcg-i~~~tp~eNi~a~v~a~~~~ 108 (109)
..|.+++.+.+.+.++.++..+ .+ ++.-|- -...++++-+..+++++.+.
T Consensus 114 ~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~a 166 (526)
T TIGR00977 114 QTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQA 166 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhC
Confidence 3577777777777777665422 22 222221 11246777777777776543
No 345
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=34.48 E-value=87 Score=24.11 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 52 NLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 52 Nidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
..|-.+| ..++|++++.++.+ . +.-.|.++| +..++|+.++-++
T Consensus 228 gaDiI~LDn~s~e~~~~av~~~-~---~~~~ieaSG-----GI~~~ni~~yA~t 272 (296)
T PRK09016 228 GADIIMLDNFTTEQMREAVKRT-N---GRALLEVSG-----NVTLETLREFAET 272 (296)
T ss_pred CCCEEEeCCCChHHHHHHHHhh-c---CCeEEEEEC-----CCCHHHHHHHHhc
Confidence 4455555 56777777777632 1 133445555 6677777776654
No 346
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=34.46 E-value=1.5e+02 Score=27.29 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred hHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccc-----------cc-ccHHHHHHHHHHHHHHhccccchhc
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCA-----------LY-ASKEKLRKIGTQMAKEFGKSRYIAN 84 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~-----------L~-gt~e~i~~~~~~~l~~~~~~g~Il~ 84 (109)
++..+...+++++.+.....++.....+..-.-..+..-.+ .+ .+|++..+.+++.++. +|-=+=
T Consensus 218 ~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~---ggv~II 294 (1178)
T TIGR02082 218 FLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAE---GGLNIV 294 (1178)
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHh---CCCcEE
Q ss_pred cCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 85 LGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 85 ~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
-||- +|.||+|+++.++++.+.
T Consensus 295 GGCC---GTtPeHI~ala~~l~~~~ 316 (1178)
T TIGR02082 295 GGCC---GTTPDHIRAIAEAVKNIK 316 (1178)
T ss_pred EecC---CCCHHHHHHHHHHhhcCC
No 347
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=34.45 E-value=76 Score=25.38 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred EEEeecch--hhhHHHHhccC-CceEee--e--cc-cChhhHhhhhcCCccccCCCcccccccHHHHHHHHHHHHHHhc-
Q psy15360 7 MTIFAKGA--HYALEELNQTK-YDIVGI--D--WT-IEPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGTQMAKEFG- 77 (109)
Q Consensus 7 vi~~~~g~--~~~l~~l~~~g-~d~~~i--d--~~-~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~~~l~~~~- 77 (109)
|+.|++|- +-++..|.+-| .+++.+ | +. .|++.++++. .-.|-.+-.++=...|-+++.+...|..-.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA---~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~ 77 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKA---LKLGASKHIVVDARDEFAEDYIFPAIKANAL 77 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHH---HHHT-SEEEEEE-HHHHHHHTHHHHHHTT--
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHH---HhcCCceeeecchHHHHHHHHHHHHHHHHHH
Confidence 57788884 45889999888 777644 3 33 4666555432 234444444444566777778777776533
Q ss_pred -cccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 78 -KSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 78 -~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.|-++++ -+.+==.+++++.+++.
T Consensus 78 Yeg~YpL~ts-----l~RplIa~~~v~~A~~~ 104 (388)
T PF00764_consen 78 YEGRYPLSTS-----LARPLIAKKLVEVAREE 104 (388)
T ss_dssp BTTTB--CCC-----CHHHHHHHHHHHHHHHH
T ss_pred hCCCcccccc-----chHHHHHHHHHHHHHHc
Confidence 255655443 22333446666666654
No 348
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=34.45 E-value=66 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 68 IGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 68 ~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.++++.+++..-||.-=.+||| |.+-+.++.+.+++|
T Consensus 19 ~~~~l~~Ac~~~GFf~v~nHGI----~~~l~~~~~~~~~~F 55 (303)
T PLN02403 19 TMSLLHQACEKWGFFQVENHGI----DKKLMEKVKQLVNSH 55 (303)
T ss_pred HHHHHHHHHHhCceEEEECCCC----CHHHHHHHHHHHHHH
Confidence 4455556666678888888987 667777777776654
No 349
>PRK07094 biotin synthase; Provisional
Probab=34.40 E-value=1e+02 Score=23.22 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
++|+|.++++.+.+. +-..+.|..|. .+..+.+.+..+++.+++
T Consensus 71 s~eei~~~~~~~~~~-g~~~i~l~gG~--~~~~~~~~l~~l~~~i~~ 114 (323)
T PRK07094 71 SPEEILECAKKAYEL-GYRTIVLQSGE--DPYYTDEKIADIIKEIKK 114 (323)
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEecCC--CCCCCHHHHHHHHHHHHc
Confidence 566676666665442 22344454443 233455666666666654
No 350
>PRK14847 hypothetical protein; Provisional
Probab=34.38 E-value=2.3e+02 Score=22.22 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHHHHhcccc-------chhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSR-------YIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g-------~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
..+.+++.+.+++.++.++..+ +.+..|-.=...|+++.+..+++++.+
T Consensus 143 ~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 143 GMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 3688999999999888876431 245555454567899999999987743
No 351
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.38 E-value=1e+02 Score=23.48 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a 104 (109)
.++|++++.++. ++...+.--+.++| +..++|+.++.++
T Consensus 225 ~~~e~l~~av~~-~~~~~~~i~leAsG-----GIt~~ni~~ya~t 263 (288)
T PRK07428 225 MPVDLMQQAVQL-IRQQNPRVKIEASG-----NITLETIRAVAET 263 (288)
T ss_pred CCHHHHHHHHHH-HHhcCCCeEEEEEC-----CCCHHHHHHHHHc
Confidence 455677666653 33212223345555 4567777766654
No 352
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=1.1e+02 Score=23.55 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHHHHhcc-ccchhccCCccC--------------CCCChHHHHHHHHHhhhhC
Q psy15360 60 ASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY--------------PDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~--------------~~tp~eNi~a~v~a~~~~~ 109 (109)
-+.++.++.++++++.+++ +.| ..+|..+. --|-+|-+.|+++.+++++
T Consensus 11 ~syk~~r~sv~~~lel~gg~~~~-i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g 74 (293)
T COG2006 11 ESYKDTRKSVRTVLELLGGLEAF-ISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAG 74 (293)
T ss_pred CCcHHHHHHHHHHHHHccccccc-cCCCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhC
Confidence 5678999999999999886 444 55665431 1366899999999999875
No 353
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.99 E-value=79 Score=23.09 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCcEEEeec-c----hhhhHHHHhccCCceEeeecc-----cChhhHhhh
Q psy15360 4 DVPMTIFAK-G----AHYALEELNQTKYDIVGIDWT-----IEPSLARSI 43 (109)
Q Consensus 4 ~~pvi~~~~-g----~~~~l~~l~~~g~d~~~id~~-----~d~~~~~~~ 43 (109)
++||.+-.. | +..+...+.+.|+|.+|++.. .|+...++.
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i 188 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI 188 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh
Confidence 567776654 2 234666788999999999642 355555544
No 354
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=33.91 E-value=1.7e+02 Score=23.60 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=52.8
Q ss_pred EEEeecchhhhHHHHhccCCceEee----ecccChhhHhhhhcCC-ccccCCCcc-----c--cccc--HHHHHHHHHHH
Q psy15360 7 MTIFAKGAHYALEELNQTKYDIVGI----DWTIEPSLARSIIKNK-TLQGNLDPC-----A--LYAS--KEKLRKIGTQM 72 (109)
Q Consensus 7 vi~~~~g~~~~l~~l~~~g~d~~~i----d~~~d~~~~~~~~g~~-~l~GNidp~-----~--L~gt--~e~i~~~~~~~ 72 (109)
..++-||.+..++.+. .|+=.+.+ |+..+-+.+.+.+|-. .+-+++++. + ++++ .+++++.++++
T Consensus 345 ~fvtH~G~nS~~Ea~~-~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l 423 (451)
T PLN02410 345 GFWSHCGWNSTLESIG-EGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISL 423 (451)
T ss_pred eeeecCchhHHHHHHH-cCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3556677778888775 78766644 5555555554554444 444555542 1 1222 23566666655
Q ss_pred HHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 73 AKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 73 l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-+++.+. +..| +++..|+..|++..+.
T Consensus 424 ~~~~~~a---~~~g-----GsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 424 KEQLRAS---VISG-----GSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHH---hcCC-----CCHHHHHHHHHHHHHh
Confidence 5554321 2222 6888999999987653
No 355
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=33.90 E-value=1.5e+02 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=11.9
Q ss_pred CCChHHHHHHHHHhhhh
Q psy15360 92 DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 92 ~tp~eNi~a~v~a~~~~ 108 (109)
..+.+.+..+.+..++.
T Consensus 166 ~~~~~ei~~~~~~l~~~ 182 (191)
T TIGR02495 166 FLDEEDLAEIATRIKEN 182 (191)
T ss_pred CCCHHHHHHHHHHhccC
Confidence 44566888888877654
No 356
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=33.82 E-value=1.9e+02 Score=26.73 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHHhccCCceEeeecccChhhHhhhhcCC-cc----------ccCCCccccc-ccHHHHHHHHHHHHHHhccc-cchh
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TL----------QGNLDPCALY-ASKEKLRKIGTQMAKEFGKS-RYIA 83 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l----------~GNidp~~L~-gt~e~i~~~~~~~l~~~~~~-g~Il 83 (109)
++..+...+++++.+.....+.+....+..- .. .|--+..-.+ .+|++..+.+++.++. | --|+
T Consensus 234 ~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~---G~v~II 310 (1229)
T PRK09490 234 FWNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAES---GFLNIV 310 (1229)
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCCCEE
Q ss_pred ccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 84 NLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 84 ~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+--| +|.||.|+++.++++.+.
T Consensus 311 GGCC----GTtPeHI~ala~~l~~~~ 332 (1229)
T PRK09490 311 GGCC----GTTPEHIAAIAEAVAGLP 332 (1229)
T ss_pred EecC----CCCHHHHHHHHHHHhcCC
No 357
>PLN02858 fructose-bisphosphate aldolase
Probab=33.81 E-value=93 Score=28.90 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=46.7
Q ss_pred CCCcEEEeec-chh-hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 3 NDVPMTIFAK-GAH-YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 3 ~~~pvi~~~~-g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
.++|..+|.+ |.. +-+....++|+.=|.++-.+...-.+. +.+ -+.+||.-++ ...+.+++.+++.|+.++
T Consensus 1300 ~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 1373 (1378)
T PLN02858 1300 KGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEA-LSS---PKKTDLIDVMSAAKEAMKAVVAEKLRLFG 1373 (1378)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHH-HhC---cccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4789999954 554 466667789998888875332222211 111 3357876553 556889999999999876
No 358
>PRK12350 citrate synthase 2; Provisional
Probab=33.73 E-value=86 Score=24.68 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=32.2
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|+-+-. +| .++++++++.+++.++. +.-|.+-||-+-....|.
T Consensus 201 plHGGA~e~v~~ml~ei~~~~~~~~~v~~~l~~---~~ri~GFGHrvYk~~DPR 251 (353)
T PRK12350 201 PLHGGAPARVLPMLDAVERTGDARGWVKGALDR---GERLMGFGHRVYRAEDPR 251 (353)
T ss_pred CcccChHHHHHHHHHHhCChhhHHHHHHHHHHC---CCccccCCCCCCCCCCCC
Confidence 556655532 34 37888888888888765 667889999997655443
No 359
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.72 E-value=1.9e+02 Score=21.03 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=49.0
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCcc----
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGI---- 89 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi---- 89 (109)
.+-..+.+.|.+++-..-.-...+..+.+.. .+ |......+ +.+++++++.++++.+.+++ ...|.|.|-.-
T Consensus 27 aia~~la~~G~~V~l~~r~~~~~~~~~~l~~-~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~ 104 (272)
T PRK08159 27 GIAKACRAAGAELAFTYQGDALKKRVEPLAA-EL-GAFVAGHCDVTDEASIDAVFETLEKKWGKLDFVVHAIGFSDKDEL 104 (272)
T ss_pred HHHHHHHHCCCEEEEEcCchHHHHHHHHHHH-hc-CCceEEecCCCCHHHHHHHHHHHHHhcCCCcEEEECCcccCcccc
Confidence 3777788999987644321111121121211 11 33222223 46889999999998888776 66777776432
Q ss_pred ---CCCCChHHHHHHHH
Q psy15360 90 ---YPDMDPEHVQVLID 103 (109)
Q Consensus 90 ---~~~tp~eNi~a~v~ 103 (109)
..+++.|.++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~ 121 (272)
T PRK08159 105 TGRYVDTSRDNFTMTMD 121 (272)
T ss_pred ccCcccCCHHHHHHHHh
Confidence 12456677766654
No 360
>PRK12351 methylcitrate synthase; Provisional
Probab=33.51 E-value=94 Score=24.65 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=32.5
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|+-+-. +| .++++++++.+++.++. +.-|.+-||.+-....|.
T Consensus 223 plHGGA~e~v~~ml~~i~~~~~~~~~v~~~l~~---~~~l~GFGHrvyk~~DPR 273 (378)
T PRK12351 223 PKHGGANEVAFEIQQRYDTPDEAEADIRRRVEN---KEVVIGFGHPVYTISDPR 273 (378)
T ss_pred CccCchHHHHHHHHHHhCCHHHHHHHHHHHHhC---CCccccCCCCCCCCCCcc
Confidence 566665543 23 36888888888888765 667889999998665554
No 361
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=33.48 E-value=1.3e+02 Score=22.84 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=47.8
Q ss_pred HHHHhccCCceEeeec----------c-----cChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc-cc
Q psy15360 18 LEELNQTKYDIVGIDW----------T-----IEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 18 l~~l~~~g~d~~~id~----------~-----~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
++.+.+.+++.+-++. . -++.+.++..+++ .-.+++||. +++.-.++.++++...+- |-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~----~~~~a~~E~er~v~~~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPR----DPEAAAEELERRVRELGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCC----chHHHHHHHHHHHHhcCceEE
Confidence 5556666666654441 1 1355666777887 778888884 335455555555555443 43
Q ss_pred chhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 81 YIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 81 ~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
-+.....+..++.|. +.-+++++.+
T Consensus 131 ~l~p~~~~~~~~~~~--~~pi~~~a~~ 155 (293)
T COG2159 131 KLHPVAQGFYPDDPR--LYPIYEAAEE 155 (293)
T ss_pred EecccccCCCCCChH--HHHHHHHHHH
Confidence 444566666666655 4444444443
No 362
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.45 E-value=2.4e+02 Score=22.24 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=15.5
Q ss_pred hhhHHHHhccCCceEeeec
Q psy15360 15 HYALEELNQTKYDIVGIDW 33 (109)
Q Consensus 15 ~~~l~~l~~~g~d~~~id~ 33 (109)
..+.+.+.+.|+|++.++.
T Consensus 144 ~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred HHHHHHHHHCCCCEEEEec
Confidence 4578888899999998853
No 363
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=33.30 E-value=1.3e+02 Score=22.44 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCcEEEeec-------chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCccccc--ccHHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAK-------GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY--ASKEKLRKIGTQMAK 74 (109)
Q Consensus 4 ~~pvi~~~~-------g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L~--gt~e~i~~~~~~~l~ 74 (109)
++|+++..- |-..++...+++|+|.+-+-. ..++|..+.+. .+-.=|+++..|. .|+++ +.+++.+
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD-LP~ee~~~~~~-~~~~~gi~~I~lv~PtT~~e---ri~~i~~ 165 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD-LPYEESDYLIS-VCNLYNIELILLIAPTSSKS---RIQKIAR 165 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC-CCHHHHHHHHH-HHHHcCCCEEEEECCCCCHH---HHHHHHH
Confidence 567655543 334589999999999986621 23455443332 1334478887653 45433 2233333
Q ss_pred Hhccccchhcc-CCccCC--CCChHHHHHHHHHhhhh
Q psy15360 75 EFGKSRYIANL-GHGIYP--DMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 75 ~~~~~g~Il~~-gcgi~~--~tp~eNi~a~v~a~~~~ 108 (109)
.. .|||.-. --|+.- ..-.++++.+++.+|++
T Consensus 166 ~a--~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 166 AA--PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred hC--CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHh
Confidence 32 4565532 222221 23357788888888764
No 364
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=33.29 E-value=1.5e+02 Score=21.25 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=30.0
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeeecccCh-hhHhhhhcCC-ccccCC
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGIDWTIEP-SLARSIIKNK-TLQGNL 53 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~-~~~~~~~g~~-~l~GNi 53 (109)
..|+-..||+..+...+.+.|..++.+|..-++ +.+++..... .+.|++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~ 94 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI 94 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc
Confidence 346777899876666677778888888864432 3344443322 344444
No 365
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=33.04 E-value=1.7e+02 Score=20.38 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=43.6
Q ss_pred cEEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-
Q psy15360 6 PMTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK- 78 (109)
Q Consensus 6 pvi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~- 78 (109)
.+++..+++. .+...+.+.|..++..... +.....+....- ...+++...-+ +.+++.+.+..+++.+.+++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNS-SKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKV 85 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC-cHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3555666542 3677788889988744321 112221111110 11123333223 46788899998888888776
Q ss_pred ccchhccCC
Q psy15360 79 SRYIANLGH 87 (109)
Q Consensus 79 ~g~Il~~gc 87 (109)
...|.+.|.
T Consensus 86 d~vi~~ag~ 94 (247)
T PRK12935 86 DILVNNAGI 94 (247)
T ss_pred CEEEECCCC
Confidence 455555554
No 366
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=32.79 E-value=1.7e+02 Score=20.22 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHHhhh
Q psy15360 92 DMDPEHVQVLIDAIHD 107 (109)
Q Consensus 92 ~tp~eNi~a~v~a~~~ 107 (109)
..|.+.++.+.+..++
T Consensus 195 ~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 195 EDPEAAARALLAAFRA 210 (212)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4577777777666554
No 367
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=32.78 E-value=1.7e+02 Score=20.39 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=40.3
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+...+.+.|..++-++-.-+ ..+..+.+. ....++..... +.+++.+.+.+.++.+.+++ ...|.+.|-
T Consensus 15 ~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 15 GIAERLAKDGFAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 477778899999887764311 111111111 11112222222 45788999999988888776 566666664
No 368
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=32.76 E-value=92 Score=25.15 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
+++++++.+++.++. +.-|.+-||.+-+...|.
T Consensus 293 ~~~~~~~~v~~~l~~---~~~i~GfGHrvYk~~DPR 325 (426)
T cd06103 293 SDEELEKYIWDTLNS---GRVVPGYGHAVLRKTDPR 325 (426)
T ss_pred CHHHHHHHHHHHHHC---CCcccCCCCCCCCCCCCc
Confidence 566777777777655 677889999997765554
No 369
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=32.72 E-value=95 Score=23.31 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=32.3
Q ss_pred cCCCcc-cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 51 GNLDPC-ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 51 GNidp~-~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
++.++. ++.|++++|.+..+++.+. +-..+++.+ .+ ..-..|.++.|.+.+
T Consensus 234 ~~~~~~~~~~g~~~~v~~~l~~~~~a-G~~~~~l~~-~~--~~~~~~~~~~~~~ev 285 (290)
T TIGR03854 234 PDVDPAELIAVGWAQLHRRIDAYLDA-GLTKFVIRP-AG--TGDWDAFLDRFVTEL 285 (290)
T ss_pred CCCCHHhccCCCHHHHHHHHHHHHHc-CCcEEEEcC-CC--CcchHHHHHHHHHhh
Confidence 345554 4679999999999998875 335677765 11 112356677666543
No 370
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.35 E-value=55 Score=25.92 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=34.5
Q ss_pred ccccCCCcc-cccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 48 TLQGNLDPC-ALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 48 ~l~GNidp~-~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
...=+++-. +.+|..+.+++.++++.+.+.+.-+.+-++| .+++--+.++++++.+
T Consensus 59 ~~sT~l~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttC--~~~iIGdDi~~v~~~~ 115 (426)
T cd01972 59 VLSTNLTEKDVVFGGEKKLEDTIKEAYSRYKPKAIFVATSC--ATGIIGDDVESVVEEL 115 (426)
T ss_pred ccccCCCccceecchHHHHHHHHHHHHHhCCCCEEEEECCC--hHHHhccCHHHHHHHH
Confidence 334455544 5578888999999999888776545555555 4444444455555444
No 371
>KOG2550|consensus
Probab=32.13 E-value=44 Score=27.35 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.5
Q ss_pred hhHHHHhccCCceEeeecc-------cC-hhhHhhhhcCC-ccccCCCc
Q psy15360 16 YALEELNQTKYDIVGIDWT-------IE-PSLARSIIKNK-TLQGNLDP 55 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~-------~d-~~~~~~~~g~~-~l~GNidp 55 (109)
..++.+.+.|+|++-+|.. +. ++..|+.+++. ++.||+=+
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT 302 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVT 302 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceee
Confidence 3889999999999988742 23 57789999988 99999855
No 372
>PLN02704 flavonol synthase
Probab=32.10 E-value=58 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.++++.+++..-||..=.+|||++ +-+.++.+.+++|
T Consensus 55 ~~~~~l~~Ac~~~GFf~l~nHGI~~----~l~~~~~~~~~~F 92 (335)
T PLN02704 55 KLTRLIAEASKEWGMFQIVNHGIPS----EVISKLQKVGKEF 92 (335)
T ss_pred HHHHHHHHHHHHcCEEEEEcCCCCH----HHHHHHHHHHHHH
Confidence 4455666666668888888999864 6677777777664
No 373
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=32.07 E-value=75 Score=24.75 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=35.4
Q ss_pred hHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHH-HHhc
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMA-KEFG 77 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l-~~~~ 77 (109)
-+....++|+.=+.++-.+..+ ..++.+... -+.+||..++ ...+.+++.+++.| +.++
T Consensus 253 ~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~~~--~~~~d~~~~~~~~~~av~~~v~~~i~~~~g 316 (321)
T PRK07084 253 QLRKAAKSAVCKINIDSDGRLAMTAAIRKVFDEK--PEEFDPRKYLGPARDELKKLYKHKIINVLG 316 (321)
T ss_pred HHHHHHHcCCceeccchHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4555667898888887543222 123333211 2348887554 55688888888888 5554
No 374
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=32.04 E-value=1.3e+02 Score=24.32 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=50.5
Q ss_pred hccCCceEeeec-----ccChhhHhhhhcCC-ccccCCCcccc-c-c--cHHHHHHHHHHHHHHhccccchhccCCccC-
Q psy15360 22 NQTKYDIVGIDW-----TIEPSLARSIIKNK-TLQGNLDPCAL-Y-A--SKEKLRKIGTQMAKEFGKSRYIANLGHGIY- 90 (109)
Q Consensus 22 ~~~g~d~~~id~-----~~d~~~~~~~~g~~-~l~GNidp~~L-~-g--t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~- 90 (109)
.-+|+|.+++.. ...-.+.++..-.- .=+|++.|.+- . | .+.. +.++++.++....|+..|-|+.
T Consensus 308 RLaGaD~ih~~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~SGG~~~~~----~p~~~~~~G~~Dvil~~GGGi~g 383 (424)
T cd08208 308 RLAGLDVVIMPGFGPRMMTPEEEVLECVIACLEPMGPIKPCLPVPGGSDSALT----LQTVYEKVGNVDFGFVPGRGVFG 383 (424)
T ss_pred HHcCCCeeeccCCCCCccchHHHHHHHHHHHhCcccCCCCceEecccCCCHhH----HHHHHHHhCCCCEEEecCccccC
Confidence 357999998832 12223333322222 23677777643 2 2 2333 3445566664368899999984
Q ss_pred -CCCChHHHHHHHHHhhh
Q psy15360 91 -PDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 91 -~~tp~eNi~a~v~a~~~ 107 (109)
|+-|.+..+||.+|+..
T Consensus 384 HP~G~aaGa~A~RqA~ea 401 (424)
T cd08208 384 HPMGPKAGAKSIRQAWEA 401 (424)
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 78999999999988754
No 375
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.95 E-value=3.1e+02 Score=23.07 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=48.0
Q ss_pred hHHHHhccCCceEeee-cccChh---hHhhhhcCC--ccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGID-WTIEPS---LARSIIKNK--TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id-~~~d~~---~~~~~~g~~--~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi 89 (109)
+++...++|+|.|.+- ...|.. .+.+...+. .+++++.-..- +-+++.+.+.++++.+. |-..+... +.
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~---Gad~I~i~-Dt 171 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEM---GVDSICIK-DM 171 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc---CCCEEEEC-CC
Confidence 4566778999998763 322332 222222222 45555421111 24678888888888775 33444443 22
Q ss_pred CCCCChHHHHHHHHHhhh
Q psy15360 90 YPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 90 ~~~tp~eNi~a~v~a~~~ 107 (109)
.-...|+-+..++.++++
T Consensus 172 ~G~~~P~~v~~lv~~lk~ 189 (582)
T TIGR01108 172 AGILTPKAAYELVSALKK 189 (582)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 333455567777777764
No 376
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=31.89 E-value=1.2e+02 Score=22.59 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHHHhc-cccchhccCCccCC------CCChHHHHHHHHHhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFG-KSRYIANLGHGIYP------DMDPEHVQVLIDAIHD 107 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~-~~g~Il~~gcgi~~------~tp~eNi~a~v~a~~~ 107 (109)
.+++++.+.++.+-+... -..+=||.||-... ...++.+..+++++++
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~ 154 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKD 154 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 378888887777654322 26778898986543 3567888999998876
No 377
>PRK14036 citrate synthase; Provisional
Probab=31.84 E-value=93 Score=24.64 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=31.5
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
.+.|+-+-. +| .++++++++.+++.++. +.-|.+-||.+-....|
T Consensus 218 plHGGA~e~v~~ml~~i~~~~~~~~~v~~~~~~---~~~i~GFGHrvyk~~DP 267 (377)
T PRK14036 218 PLHGGANEDVLAMLEEIGSVENVRPYLDERLAN---KQKIMGFGHREYKVKDP 267 (377)
T ss_pred ccccChHHHHHHHHHHhCChhhHHHHHHHHHHC---CCceecCCCCCCCCCCc
Confidence 556654432 33 37888888888888765 66788999999765554
No 378
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.82 E-value=1.9e+02 Score=20.68 Aligned_cols=85 Identities=8% Similarity=0.056 Sum_probs=47.5
Q ss_pred hhHHHHhccCCceEeeecc-cChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWT-IEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~-~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+-..+.+.|.+++-.+.. -+..++.+ +..+ + |..-+..+ +.+++++++.++++.+.+++ ...|.+.|-.-+
T Consensus 23 a~a~~l~~~G~~v~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~ 99 (260)
T PRK06997 23 GIAKACKREGAELAFTYVGDRFKDRITE-FAAE-F-GSDLVFPCDVASDEQIDALFASLGQHWDGLDGLVHSIGFAPREA 99 (260)
T ss_pred HHHHHHHHCCCeEEEEccchHHHHHHHH-HHHh-c-CCcceeeccCCCHHHHHHHHHHHHHHhCCCcEEEEccccCCccc
Confidence 3677788899998755421 11122211 1111 1 22111122 46889999999999888776 567777764321
Q ss_pred ------CCCChHHHHHHHH
Q psy15360 91 ------PDMDPEHVQVLID 103 (109)
Q Consensus 91 ------~~tp~eNi~a~v~ 103 (109)
.+.+.|.++..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ 118 (260)
T PRK06997 100 IAGDFLDGLSRENFRIAHD 118 (260)
T ss_pred cccccchhcCHHHHHHHHH
Confidence 2355666655543
No 379
>PRK04148 hypothetical protein; Provisional
Probab=31.76 E-value=1e+02 Score=20.89 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=49.8
Q ss_pred CcEEEeecchh-hhHHHHhccCCceEeeecccCh-hhHhhhhcCCccccCCC-cc--------ccc--ccHHHHHHHHHH
Q psy15360 5 VPMTIFAKGAH-YALEELNQTKYDIVGIDWTIEP-SLARSIIKNKTLQGNLD-PC--------ALY--ASKEKLRKIGTQ 71 (109)
Q Consensus 5 ~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~-~~~~~~~g~~~l~GNid-p~--------~L~--gt~e~i~~~~~~ 71 (109)
..++-..+|+. .+-..|.+.|.+++.+|..-+. .++++. +-..+.+++= |. +++ ..|.|+.....+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH
Confidence 44677788865 4677788999999999964432 233332 2224455442 32 222 568888888887
Q ss_pred HHHHhccccchhccCCcc
Q psy15360 72 MAKEFGKSRYIANLGHGI 89 (109)
Q Consensus 72 ~l~~~~~~g~Il~~gcgi 89 (109)
+-+..+-.=+|--++.+.
T Consensus 97 la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 97 LAKKINVPLIIKPLSGEE 114 (134)
T ss_pred HHHHcCCCEEEEcCCCCC
Confidence 776654333344444333
No 380
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=31.71 E-value=1e+02 Score=24.75 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=14.0
Q ss_pred CCChH-HHHHHHHHhhhhC
Q psy15360 92 DMDPE-HVQVLIDAIHDAL 109 (109)
Q Consensus 92 ~tp~e-Ni~a~v~a~~~~~ 109 (109)
....| |.+++.+++++|+
T Consensus 222 SAt~e~Ny~~ia~lAk~yg 240 (389)
T TIGR00381 222 SANLDLDYEKIANAAKKYG 240 (389)
T ss_pred ecCchhhHHHHHHHHHHhC
Confidence 34556 9999999998885
No 381
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=31.68 E-value=54 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=24.2
Q ss_pred CCcccccccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 53 LDPCALYASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 53 idp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
+|-.+|.=+++.+++.+.++++..-++-+.|++|
T Consensus 63 i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 63 IDIAIITVPAEAAQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp TSEEEEES-HHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 6666666678889999999999654566777664
No 382
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.63 E-value=91 Score=24.57 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred hHHHHhccCCceEeeecccChh---hHhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhcc
Q psy15360 17 ALEELNQTKYDIVGIDWTIEPS---LARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~d~~---~~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~~ 78 (109)
-+....+.|+.=|.++-.+... .+++.+... -+.+||..++ ...+.+++.+++.|+.++.
T Consensus 262 ~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~--~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 325 (347)
T PRK09196 262 EIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAEN--PSEFDPRKYLKPAMEAMKKICKARYEAFGT 325 (347)
T ss_pred HHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhC--CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455667899888887543222 223444222 2347887554 5568899999999998864
No 383
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=31.62 E-value=2.3e+02 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcc-ccc-hhccCCccCCCCC------hHHHHHHHHHhhh
Q psy15360 67 KIGTQMAKEFGK-SRY-IANLGHGIYPDMD------PEHVQVLIDAIHD 107 (109)
Q Consensus 67 ~~~~~~l~~~~~-~g~-Il~~gcgi~~~tp------~eNi~a~v~a~~~ 107 (109)
+-++++++.+.. |-. +++..-.+.-.+| |+.+..+++++++
T Consensus 149 ~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~ 197 (279)
T cd07947 149 PFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRK 197 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHH
Confidence 444455544322 333 4666555555666 3567777776654
No 384
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=31.33 E-value=1.1e+02 Score=23.61 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++|+|.+++++..+. +-..+.+..| ..|+.+.|-+..+++.+++.
T Consensus 80 ~~eeI~~~a~~~~~~-G~~~v~l~~G--~~p~~~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 80 SLEEIVARVKEAYAP-GATEVHIVGG--LHPNLPFEWYLDMIRTLKEA 124 (351)
T ss_pred CHHHHHHHHHHHHHC-CCcEEEEecC--CCCCCCHHHHHHHHHHHHHH
Confidence 788888888876543 2123444444 34567788888888888764
No 385
>PRK14034 citrate synthase; Provisional
Probab=31.29 E-value=1e+02 Score=24.39 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.8
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|+-+-. +| .++++++++.+++.++. +.-|.+-||-+-....|.
T Consensus 216 plHGGA~e~~~~~l~~i~~~~~~~~~v~~~~~~---~~~l~GFGHrvyk~~DPR 266 (372)
T PRK14034 216 PLHGGANENVMKMLTEIGEEENVESYIHNKLQN---KEKIMGFGHRVYRQGDPR 266 (372)
T ss_pred CccCCHHHHHHHHHHHhCCHHHHHHHHHHHHhC---CCCcccCCCCCCCCCCcC
Confidence 455555532 23 36788888888777765 567889999997654443
No 386
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.03 E-value=2.2e+02 Score=21.10 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCcEEEeecchh---hhHHHHhccCCceEeeecc-cChhhHhhhhc---CC--ccccCCCccccc-ccHHHHHHHHHHHH
Q psy15360 4 DVPMTIFAKGAH---YALEELNQTKYDIVGIDWT-IEPSLARSIIK---NK--TLQGNLDPCALY-ASKEKLRKIGTQMA 73 (109)
Q Consensus 4 ~~pvi~~~~g~~---~~l~~l~~~g~d~~~id~~-~d~~~~~~~~g---~~--~l~GNidp~~L~-gt~e~i~~~~~~~l 73 (109)
+.++..++.... ..++...++|++.+.+-.. .++.++++... ++ .+.. .+...+ -+++.+.+.++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~--~~~~a~~~~~~~~~~~~~~~~ 148 (266)
T cd07944 71 NTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF--NLMAISGYSDEELLELLELVN 148 (266)
T ss_pred CCEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE--EEEeecCCCHHHHHHHHHHHH
Confidence 466666765542 4566667899998877532 24444433332 11 1222 222122 47888988888887
Q ss_pred HHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 74 KEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 74 ~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+. + ...+...-.+. -..|+.+..+++++++
T Consensus 149 ~~-g--~~~i~l~DT~G-~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 149 EI-K--PDVFYIVDSFG-SMYPEDIKRIISLLRS 178 (266)
T ss_pred hC-C--CCEEEEecCCC-CCCHHHHHHHHHHHHH
Confidence 65 3 23333332222 3445667777777654
No 387
>COG1773 Rubredoxin [Energy production and conversion]
Probab=30.84 E-value=25 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.2
Q ss_pred cCCccCCCCChHHH
Q psy15360 85 LGHGIYPDMDPEHV 98 (109)
Q Consensus 85 ~gcgi~~~tp~eNi 98 (109)
+.|+|+|+||.|.|
T Consensus 20 p~~gi~pgT~fedl 33 (55)
T COG1773 20 PRCGIAPGTPFEDL 33 (55)
T ss_pred ccCCCCCCCchhhC
Confidence 45789999998765
No 388
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=30.81 E-value=2.1e+02 Score=21.75 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=6.4
Q ss_pred cchhccCCccCC
Q psy15360 80 RYIANLGHGIYP 91 (109)
Q Consensus 80 g~Il~~gcgi~~ 91 (109)
|+|++.+|++.+
T Consensus 234 G~i~d~~hg~~~ 245 (365)
T TIGR03583 234 GVILDVGHGTAS 245 (365)
T ss_pred eEEEEeCCCCCC
Confidence 555555555443
No 389
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=30.81 E-value=1.9e+02 Score=20.13 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=38.8
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+...+.+.|..++.++-..+ ..++.+.+. ...+++...-. +.+++++++..+++.+..++ ..+|.+.|-
T Consensus 18 ~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 18 ATCRRFAEEGAKVAVFDLNREAAEKVAADIR--AKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHHHHCCCEEEEecCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 477778888998887764221 111222111 11223222222 35678888888888777665 456666654
No 390
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=30.72 E-value=28 Score=26.70 Aligned_cols=48 Identities=6% Similarity=0.104 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHhc--c-ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 61 SKEKLRKIGTQMAKEFG--K-SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~--~-~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+++.-...++++++.++ + -|+.+|--+.++...-.++++.|+++.++.
T Consensus 80 ~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~~~ 130 (311)
T PF03644_consen 80 DEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLRKE 130 (311)
T ss_dssp -TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHHHH
Confidence 44444555777777665 3 689999998888767788898888887764
No 391
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=30.71 E-value=1.9e+02 Score=20.16 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=44.4
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+-|..++-.... +...+.+..... ....++..... ..+++++++..+++.+.+++ ...|.+.|...+
T Consensus 17 ~la~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 95 (248)
T PRK06947 17 ATAVLAAARGWSVGINYAR-DAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIVAPSM 95 (248)
T ss_pred HHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCC
Confidence 4777788889887543221 222221111110 11112221112 35778888888888877665 567777775432
Q ss_pred --CCCChHHHHHHH
Q psy15360 91 --PDMDPEHVQVLI 102 (109)
Q Consensus 91 --~~tp~eNi~a~v 102 (109)
.+.+.+.++.++
T Consensus 96 ~~~~~~~~~~~~~~ 109 (248)
T PRK06947 96 PLADMDAARLRRMF 109 (248)
T ss_pred ChhhCCHHHHHHHH
Confidence 244555554443
No 392
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=30.62 E-value=2.1e+02 Score=20.71 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCCcEEEeecchhhhHHHHhccCCc-eEeeecccC-hhhHhhhhcC-----C--ccccC--CCcccccccHHHHHHHHHH
Q psy15360 3 NDVPMTIFAKGAHYALEELNQTKYD-IVGIDWTIE-PSLARSIIKN-----K--TLQGN--LDPCALYASKEKLRKIGTQ 71 (109)
Q Consensus 3 ~~~pvi~~~~g~~~~l~~l~~~g~d-~~~id~~~d-~~~~~~~~g~-----~--~l~GN--idp~~L~gt~e~i~~~~~~ 71 (109)
.+..++=..||+..+.-.+...|.. ++.+|..-. ++.|++.+.. . ...|+ +|-.+..-..+.+.+..++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~ 198 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELAPD 198 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHH
Confidence 3455777889885433335566765 777774321 3444444322 1 23453 3332222334555555666
Q ss_pred HHHHhccccchhccC
Q psy15360 72 MAKEFGKSRYIANLG 86 (109)
Q Consensus 72 ~l~~~~~~g~Il~~g 86 (109)
+.+.++++|.++-+|
T Consensus 199 ~~~~LkpgG~lilsg 213 (250)
T PRK00517 199 LARLLKPGGRLILSG 213 (250)
T ss_pred HHHhcCCCcEEEEEE
Confidence 666667666655444
No 393
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.51 E-value=2.2e+02 Score=21.49 Aligned_cols=86 Identities=12% Similarity=0.255 Sum_probs=57.7
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC-
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~- 90 (109)
.+-..+++-|.+++-+.=..| +.+..+.+.++ .+.= +..-. +.+++++.+-..++.+.... ...|=|.|=|..
T Consensus 21 ~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v--~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 21 ELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEV--EVIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceE--EEEECcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCcc
Confidence 477889999999998875444 66666666654 2222 22122 46777777777777776555 667777777764
Q ss_pred --CCCChHHHHHHHH
Q psy15360 91 --PDMDPEHVQVLID 103 (109)
Q Consensus 91 --~~tp~eNi~a~v~ 103 (109)
.+++++..+.|++
T Consensus 99 ~f~~~~~~~~~~mi~ 113 (265)
T COG0300 99 PFLELSLDEEEEMIQ 113 (265)
T ss_pred chhhCChHHHHHHHH
Confidence 3789988887775
No 394
>PRK06886 hypothetical protein; Validated
Probab=30.34 E-value=99 Score=23.90 Aligned_cols=50 Identities=10% Similarity=-0.156 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 60 ASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
-|.|+|.+++.+.|+.+-. |---+=+=.++-|...+.+++++.+.-++|.
T Consensus 62 ~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~ 112 (329)
T PRK06886 62 STVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYK 112 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhc
Confidence 3889999999999988643 2111222234556667888888888877763
No 395
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=30.30 E-value=1.5e+02 Score=20.95 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHH
Q psy15360 61 SKEKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLI 102 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v 102 (109)
..+..++.=+++|+.+-. ++.|+|||.|+.- .+||..++-
T Consensus 53 GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~v~--~~enr~~l~ 93 (172)
T COG0703 53 GEEGFRRLETEVLKELLEEDNAVIATGGGAVL--SEENRNLLK 93 (172)
T ss_pred hHHHHHHHHHHHHHHHhhcCCeEEECCCcccc--CHHHHHHHH
Confidence 345566666667766654 5689999988753 455555543
No 396
>PLN02321 2-isopropylmalate synthase
Probab=30.23 E-value=1.2e+02 Score=25.91 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHHHHHhccccc-hhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRY-IANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~-Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.|.|++.+.+++.++.++..|. .+..+|.-...++++-+..+++++.+.
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~a 252 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKA 252 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHc
Confidence 4678888888888887765333 466677666678999999999888764
No 397
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.00 E-value=2.6e+02 Score=23.00 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=27.1
Q ss_pred hhHHHHhccCCceEeeecc-------c-ChhhHhhhhcCC--ccccCCC
Q psy15360 16 YALEELNQTKYDIVGIDWT-------I-EPSLARSIIKNK--TLQGNLD 54 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~-------~-d~~~~~~~~g~~--~l~GNid 54 (109)
...+.|.+.|+|++-+|.. . .++++++.+++. ...||+-
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~ 293 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVV 293 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEecccc
Confidence 5777888999999987621 1 367777777653 5567764
No 398
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.92 E-value=3.4e+02 Score=22.88 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=50.6
Q ss_pred hHHHHhccCCceEeee-cccCh---hhHhhhhcCC--ccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGID-WTIEP---SLARSIIKNK--TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id-~~~d~---~~~~~~~g~~--~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi 89 (109)
.++...++|+|.|.+- ...|+ ..+.+...+. .+++++.-..- .-|++.+.+.++++.+. |..++... +.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~---Gad~I~i~-Dt 176 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEM---GCDSICIK-DM 176 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc---CCCEEEEC-Cc
Confidence 4666778999998773 22233 2222222222 56677632111 24678888888888765 34444443 34
Q ss_pred CCCCChHHHHHHHHHhhh
Q psy15360 90 YPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 90 ~~~tp~eNi~a~v~a~~~ 107 (109)
.-...|+.+..+++++++
T Consensus 177 ~G~~~P~~~~~lv~~lk~ 194 (592)
T PRK09282 177 AGLLTPYAAYELVKALKE 194 (592)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 445666778888887764
No 399
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=29.84 E-value=2.1e+02 Score=20.44 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=39.9
Q ss_pred hhHHHHhccCCceEeeecccC---hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIE---PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d---~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+-..+.+.|.+++-.+..-+ ..+..+.+... . ++.-+..+ +.+++++++.++++.+.+++ ...|.+.|-
T Consensus 23 aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 23 GIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP-L-NPSLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc-c-CcceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 377778889998764432111 12222222111 1 11112223 47889999999999888776 566667764
No 400
>PRK00431 RNase III inhibitor; Provisional
Probab=29.73 E-value=1.3e+02 Score=20.69 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcc----ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 62 KEKLRKIGTQMAKEFGK----SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~~----~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.+++..+.+|+.+.. .--+=..|+|+.--.|.+-.+.|++++++|
T Consensus 94 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f 144 (177)
T PRK00431 94 AELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREF 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHH
Confidence 47788888888877542 233445677776667778889999999876
No 401
>PRK14432 acylphosphatase; Provisional
Probab=29.72 E-value=86 Score=19.65 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=14.0
Q ss_pred ccchhccCCc-cC--CC-CChHHHHHHHHHhh
Q psy15360 79 SRYIANLGHG-IY--PD-MDPEHVQVLIDAIH 106 (109)
Q Consensus 79 ~g~Il~~gcg-i~--~~-tp~eNi~a~v~a~~ 106 (109)
.||+-|+..| +- .. .+.++|.+|++..+
T Consensus 31 ~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~ 62 (93)
T PRK14432 31 KGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLK 62 (93)
T ss_pred EEEEEECCCCCEEEEEEECCHHHHHHHHHHHH
Confidence 4555555555 22 22 45555555555544
No 402
>PTZ00066 pyruvate kinase; Provisional
Probab=29.67 E-value=2.5e+02 Score=23.37 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=55.7
Q ss_pred HHHhccCCceEeeec---ccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCC
Q psy15360 19 EELNQTKYDIVGIDW---TIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDM 93 (109)
Q Consensus 19 ~~l~~~g~d~~~id~---~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~t 93 (109)
+.-.+.|+|.+...+ .-|+.++|+.++.. |. ++.++ .-+++.++ ...++++.. -|.+++=| ++.-.+
T Consensus 217 ~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~---g~-~~~IiAKIE~~~av~-NldeIl~~s--DGIMVARG-DLGvEi 288 (513)
T PTZ00066 217 NFAIPMGCDFIALSFVQSADDVRLCRQLLGER---GR-HIKIIPKIENIEGLI-NFDEILAES--DGIMVARG-DLGMEI 288 (513)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHHHHhC---CC-CceEEEEECCHHHHH-HHHHHHHhc--CEEEEEcc-cccccc
Confidence 555688999876654 34788888888653 22 44343 46777776 557777763 35667777 778889
Q ss_pred ChHHH----HHHHHHhhhh
Q psy15360 94 DPEHV----QVLIDAIHDA 108 (109)
Q Consensus 94 p~eNi----~a~v~a~~~~ 108 (109)
|.|.+ +.+++.++++
T Consensus 289 p~e~vp~~QK~II~~c~~~ 307 (513)
T PTZ00066 289 PPEKVFLAQKMMISKCNVA 307 (513)
T ss_pred ChHHcchHHHHHHHHHHHh
Confidence 99888 6666666654
No 403
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.43 E-value=18 Score=20.10 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=7.6
Q ss_pred CCccCCCCChHHH
Q psy15360 86 GHGIYPDMDPEHV 98 (109)
Q Consensus 86 gcgi~~~tp~eNi 98 (109)
..+|+|+||.+.|
T Consensus 19 ~~~i~pGt~F~~L 31 (47)
T PF00301_consen 19 ENGIPPGTPFEDL 31 (47)
T ss_dssp GGTB-TT--GGGS
T ss_pred ccCcCCCCCHHHC
Confidence 3679999998876
No 404
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.39 E-value=2.3e+02 Score=20.68 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=52.3
Q ss_pred cEEEeecch-----h-hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc
Q psy15360 6 PMTIFAKGA-----H-YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 6 pvi~~~~g~-----~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~ 78 (109)
++++..+++ . .+-..+.+.|..++-.+-.-...+..+.+.. .+ |+-....+ +.+++++++.++++.+.+++
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~ 83 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQ-EL-GSDYVYELDVSKPEHFKSLAESLKKDLGK 83 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHH-hc-CCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 455565542 2 3667788899988755432111111111111 11 11112223 47889999999998888776
Q ss_pred -ccchhccCCcc-------CCCCChHHHHHHHH
Q psy15360 79 -SRYIANLGHGI-------YPDMDPEHVQVLID 103 (109)
Q Consensus 79 -~g~Il~~gcgi-------~~~tp~eNi~a~v~ 103 (109)
...|.|.|-.- ..+.+.|.++.+++
T Consensus 84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~ 116 (274)
T PRK08415 84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAME 116 (274)
T ss_pred CCEEEECCccCcccccccccccCCHHHHHHHhh
Confidence 56677766321 12456666655543
No 405
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=29.37 E-value=75 Score=23.87 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHH
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLI 102 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v 102 (109)
+.|||++|.+++++..+. +-..++|.+...=+...+.+.++.+.
T Consensus 232 i~Gtp~ev~e~l~~~~~a-Gvd~l~l~~~~~~~~~~~~~~~~~~~ 275 (278)
T TIGR03620 232 AWGDADTVAARVREHLDA-GADHVAVQVLTDDPTPLPREQWRELA 275 (278)
T ss_pred eeCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCcCHHHHHHHHh
Confidence 469999999999988876 32456676642222223455555543
No 406
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=29.28 E-value=94 Score=27.44 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=46.5
Q ss_pred hHHHHhccCCceEeeeccc----ChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHH-HHHHHhcc-ccchhccCCc
Q psy15360 17 ALEELNQTKYDIVGIDWTI----EPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGT-QMAKEFGK-SRYIANLGHG 88 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcg 88 (109)
-+.++....+|-+-|..|+ |+..|.+.+.++. .+.+..+. -+|.+...+..+ -+++.+.. |..|..+||+
T Consensus 682 ~lsev~g~~Id~vfIGSCTgr~~DlraAA~ILkg~~--v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg 759 (835)
T PRK09238 682 LLSEVAGTKIDEVFIGSCMTNIGHFRAAGKLLEGKK--GQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCS 759 (835)
T ss_pred EHHHhcCCccCeEEEEcCCCCHHHHHHHHHHHcCCc--cCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcch
Confidence 5666777888888888887 6777778776554 34443333 377655444444 34555555 7788999998
Q ss_pred c
Q psy15360 89 I 89 (109)
Q Consensus 89 i 89 (109)
.
T Consensus 760 ~ 760 (835)
T PRK09238 760 L 760 (835)
T ss_pred h
Confidence 5
No 407
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=29.19 E-value=1.7e+02 Score=21.64 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=41.3
Q ss_pred hHHHHhccCCceEee----e-------c-ccChhhHhhhhcC--C-ccccCCCcccccccHHHHHHHHHHHHHHhccccc
Q psy15360 17 ALEELNQTKYDIVGI----D-------W-TIEPSLARSIIKN--K-TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRY 81 (109)
Q Consensus 17 ~l~~l~~~g~d~~~i----d-------~-~~d~~~~~~~~g~--~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~ 81 (109)
....+.++|+|.+-+ | | .-|+.+.|+.... + ++.|+|+|. ++ ..+++. +.+
T Consensus 122 ~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~-------~i----~~~~~~---~~~ 187 (217)
T COG0269 122 RAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPE-------DI----PLFKGI---GAD 187 (217)
T ss_pred HHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHH-------HH----HHHhcC---CCC
Confidence 555566677776522 2 3 2356667776653 4 678888772 11 112221 445
Q ss_pred hhccCCccCCC-CChHHHHHHHHHhhh
Q psy15360 82 IANLGHGIYPD-MDPEHVQVLIDAIHD 107 (109)
Q Consensus 82 Il~~gcgi~~~-tp~eNi~a~v~a~~~ 107 (109)
||=.|-.|... -|.+-.+.|.+..++
T Consensus 188 ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 188 IVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred EEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 55555566543 345555666666543
No 408
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=29.18 E-value=19 Score=13.92 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=5.4
Q ss_pred CcEEEeec
Q psy15360 5 VPMTIFAK 12 (109)
Q Consensus 5 ~pvi~~~~ 12 (109)
.|||-+||
T Consensus 3 cpvirycc 10 (11)
T PF08097_consen 3 CPVIRYCC 10 (11)
T ss_pred cchhheec
Confidence 47777766
No 409
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=29.12 E-value=46 Score=23.87 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=31.1
Q ss_pred chhhhHHHHhccCCceEeeecccChhhHhhhhcCCccc--cCCCcccccccHHHHHHHHHHH
Q psy15360 13 GAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQ--GNLDPCALYASKEKLRKIGTQM 72 (109)
Q Consensus 13 g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~--GNidp~~L~gt~e~i~~~~~~~ 72 (109)
|..+.|+.|+++|+++|.+-.-.. .-...-+-.+. =.+|| -+||.+++++-++++
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~---~~~~~~gY~~~d~~~vd~--~~Gt~~d~~~Lv~~~ 61 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFE---SPNGYHGYDPSDYYAVDP--RFGTMEDFKELVDAA 61 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EE---SSSSTTTTSESEEEEEST--TTBHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHcCCCceecccccc---cccccccccceeeecccc--ccchhhhhhhhhhcc
Confidence 335678999999999998865432 10000000111 12333 259988877776665
No 410
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.05 E-value=94 Score=24.18 Aligned_cols=45 Identities=7% Similarity=-0.198 Sum_probs=26.2
Q ss_pred CCCcEEEeecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC
Q psy15360 3 NDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK 47 (109)
Q Consensus 3 ~~~pvi~~~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~ 47 (109)
.++|++.+..|....++.+.+.|+.++..-..+...+..+..|-+
T Consensus 81 ~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD 125 (320)
T cd04743 81 IKPTFALIAGGRPDQARALEAIGISTYLHVPSPGLLKQFLENGAR 125 (320)
T ss_pred cCCcEEEEcCCChHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence 356777777665444677778888877655433333333344444
No 411
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=29.01 E-value=2.5e+02 Score=21.05 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCcc-CCCCChHHHHHHHHHhhhhC
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGI-YPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi-~~~tp~eNi~a~v~a~~~~~ 109 (109)
.+++.+++.++.++.. + +..+.+.|-.- ....|.+.++..++.+++++
T Consensus 137 ~~~~~~~~~~~~~~~~-~-~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g 185 (324)
T TIGR01430 137 KQPEAAEETLELAKPY-K-EQTIVGFGLAGDERGGPPPDFVRAFAIARELG 185 (324)
T ss_pred CCHHHHHHHHHHHHhh-c-cCcEEEecCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 4567666666655542 2 22343322221 12456888999999988753
No 412
>PLN02997 flavonol synthase
Probab=28.92 E-value=88 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 68 IGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 68 ~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.++++.+++..-||..=.+|||+ .+-++++.+++++|
T Consensus 46 ~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~F 82 (325)
T PLN02997 46 LVREVVKASEEWGVFQVVNHGIP----TELMRQLQMVGKQF 82 (325)
T ss_pred HHHHHHHHHHHCCEEEEECCCCC----HHHHHHHHHHHHHH
Confidence 44555555556788777889986 46778888777764
No 413
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=28.91 E-value=1e+02 Score=24.02 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
++++++++.+++.++. +.-|.+-||-+-+...+.
T Consensus 230 ~~~~~~~~~i~~~l~~---~~~i~GfGH~vyk~~DPR 263 (358)
T cd06118 230 GTPENVEAYIWKKLAN---KRRIMGFGHRVYKTYDPR 263 (358)
T ss_pred CCchHHHHHHHHHHhc---CCeecCCCCCCCCCCCCc
Confidence 5567777777776664 667889999997655443
No 414
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.83 E-value=2e+02 Score=19.92 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=44.3
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccCC-
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIYP- 91 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~~- 91 (109)
.+...+.+.|.+++-++-.- +..+..+.+.. .-.++..... +.+++.+++..+++.+.+++ ...|.+.|-..+.
T Consensus 22 ~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 99 (239)
T PRK07666 22 AVAIALAKEGVNVGLLARTEENLKAVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGK 99 (239)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCccccCCC
Confidence 36677888999887665321 12222222210 0011211112 35678888888888777665 5666666654332
Q ss_pred --CCChHHHHH
Q psy15360 92 --DMDPEHVQV 100 (109)
Q Consensus 92 --~tp~eNi~a 100 (109)
++++|..+.
T Consensus 100 ~~~~~~~~~~~ 110 (239)
T PRK07666 100 FLELDPAEWEK 110 (239)
T ss_pred cccCCHHHHHH
Confidence 355555443
No 415
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.82 E-value=95 Score=22.80 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=12.0
Q ss_pred CcccccccHHHHHHHHHHHHHH
Q psy15360 54 DPCALYASKEKLRKIGTQMAKE 75 (109)
Q Consensus 54 dp~~L~gt~e~i~~~~~~~l~~ 75 (109)
.|.....+++++.+..+++.+.
T Consensus 100 pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 100 PPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred CCcCCCCCHHHHHHHHHHHHhc
Confidence 3433334556666666666665
No 416
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.79 E-value=1.3e+02 Score=22.55 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccC---------CCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIY---------PDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~---------~~tp~eNi~a~v~a~~~ 107 (109)
++++..+.++.+-+ .+-..+=||.||--. ....+|.+..+++++++
T Consensus 111 ~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 111 NKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH
Confidence 77888877776643 332456788888544 22567899999998875
No 417
>PTZ00333 triosephosphate isomerase; Provisional
Probab=28.76 E-value=1.4e+02 Score=22.24 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHhccCCceEeeec---ccChhhHhhhhcCC---ccccCCCccccccc----------HHHHHHHHHHHHHHhcc---
Q psy15360 18 LEELNQTKYDIVGIDW---TIEPSLARSIIKNK---TLQGNLDPCALYAS----------KEKLRKIGTQMAKEFGK--- 78 (109)
Q Consensus 18 l~~l~~~g~d~~~id~---~~d~~~~~~~~g~~---~l~GNidp~~L~gt----------~e~i~~~~~~~l~~~~~--- 78 (109)
-+.|+++|++.+-+.+ +....|--+.+..| ++.-++.|.+-.|. .+.+.++++..++....
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~ 161 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAW 161 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHc
Confidence 3446689998775643 23332222222222 67778888654543 34455566655543221
Q ss_pred --------ccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 79 --------SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 79 --------~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+.|-+++ |.++ ++|-++.+.+++|+
T Consensus 162 ~~iiIAYEPvWAIGt--g~~a--~~e~i~~~~~~IR~ 194 (255)
T PTZ00333 162 DNIVIAYEPVWAIGT--GKVA--TPEQAQEVHAFIRK 194 (255)
T ss_pred ceEEEEECCHHHhCC--CCCC--CHHHHHHHHHHHHH
Confidence 3344444 4554 78888888888876
No 418
>PLN02489 homocysteine S-methyltransferase
Probab=28.76 E-value=1.1e+02 Score=23.68 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
++++..+.+++..+. |.-|++--|| |.+|.|+++-+++++
T Consensus 294 ~~~~~~~~~~~~~~~---Ga~iIGGCCg----t~P~hI~al~~~l~~ 333 (335)
T PLN02489 294 SDEDFVSYVNKWRDA---GASLIGGCCR----TTPNTIRAISKALSE 333 (335)
T ss_pred CHHHHHHHHHHHHHC---CCcEEeeCCC----CCHHHHHHHHHHHhc
Confidence 578888888888775 6677887785 567899999998764
No 419
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=28.63 E-value=51 Score=20.54 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccC
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.+.++|+++++++++. |+|+++-
T Consensus 77 ~~~~~v~~al~~L~~e----G~IYsTi 99 (102)
T PF08784_consen 77 MSENEVRKALDFLSNE----GHIYSTI 99 (102)
T ss_dssp S-HHHHHHHHHHHHHT----TSEEESS
T ss_pred cCHHHHHHHHHHHHhC----CeEeccc
Confidence 3778899998888875 7777763
No 420
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.60 E-value=1.7e+02 Score=21.98 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHHHHHh--ccccchhccCCccC-----CCCChHHHHHHHHHhhh
Q psy15360 59 YASKEKLRKIGTQMAKEF--GKSRYIANLGHGIY-----PDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~--~~~g~Il~~gcgi~-----~~tp~eNi~a~v~a~~~ 107 (109)
.|++++..+.++++.+.. +-..+=||.+|--. ....+|.+..+++++++
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~ 154 (294)
T cd04741 99 TGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA 154 (294)
T ss_pred CCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 466788888787776543 22467788888432 22357889999998876
No 421
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=28.59 E-value=96 Score=22.58 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=42.7
Q ss_pred CcEEEeecchhhhHHHHhccCCceEeee-cccChhhHhhhhcCCccccCCCcccccccHHHHHHH
Q psy15360 5 VPMTIFAKGAHYALEELNQTKYDIVGID-WTIEPSLARSIIKNKTLQGNLDPCALYASKEKLRKI 68 (109)
Q Consensus 5 ~pvi~~~~g~~~~l~~l~~~g~d~~~id-~~~d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~ 68 (109)
.|+++.++.....+..+.+.|+.++... ..+|+..+.+.++.+. |+-.++-|.+.-...-
T Consensus 98 ~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~----i~~vlvEGG~~L~~s~ 158 (218)
T COG1985 98 APTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAERG----INSVLVEGGATLNGSF 158 (218)
T ss_pred CcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhCC----CcEEEEccCHHHHHHH
Confidence 5888887776557778889999998776 6789999999988653 4444444554443333
No 422
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=28.56 E-value=89 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred ccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 58 LYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 58 L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
|+|..++|-+++.+.+.+-.++--|.+.-||--. |.|- +++++.++.
T Consensus 113 llGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~--~~e~-~~i~~~I~~ 159 (253)
T COG1922 113 LLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFD--PEEE-EAIVERIAA 159 (253)
T ss_pred EecCCHHHHHHHHHHHHHHCCCceEEEecCCCCC--hhhH-HHHHHHHHh
Confidence 4676677777777777765544455665555433 3333 455554443
No 423
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=28.42 E-value=44 Score=26.06 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcc---ccchhccCCc
Q psy15360 62 KEKLRKIGTQMAKEFGK---SRYIANLGHG 88 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~~---~g~Il~~gcg 88 (109)
...|+..+|+++.+.++ -|+.||.||.
T Consensus 69 IAAIDN~tRKLmQqgK~p~~VG~fFSlGHS 98 (342)
T COG3376 69 IAAIDNVTRKLMQQGKNPLGVGFFFSLGHS 98 (342)
T ss_pred HHHHHHHHHHHHhCCCCCceeeEEEecCch
Confidence 46789999999999874 4899999997
No 424
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.41 E-value=69 Score=21.28 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=26.4
Q ss_pred CCccc-ccccHHHHHHHHHHHHHHhcc-ccc---hhccCCcc
Q psy15360 53 LDPCA-LYASKEKLRKIGTQMAKEFGK-SRY---IANLGHGI 89 (109)
Q Consensus 53 idp~~-L~gt~e~i~~~~~~~l~~~~~-~g~---Il~~gcgi 89 (109)
+.|.+ |-++.|.+++--++.|+..-+ +-| +|++||+-
T Consensus 55 iqpvivls~dqetl~aihrraler~vttslyieemfstghda 96 (135)
T COG4954 55 IQPVIVLSGDQETLKAIHRRALERKVTTSLYIEEMFSTGHDA 96 (135)
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCcceeHHHHHhccchH
Confidence 34543 458999999998999987443 333 69999863
No 425
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=28.40 E-value=93 Score=26.64 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=43.5
Q ss_pred hHHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+..+....+|.+-+..|+ |+..|.+.+.++.+.=++...+.-||.+...+..+ -+++.+.. |-.|..+||+.
T Consensus 277 ~v~e~~g~~id~v~IGSCTn~~~~Dl~~aA~il~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~ 356 (658)
T TIGR01342 277 PVREIAGIEVDQVMIGSCTNGAFEDLLPAAKLLEGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGA 356 (658)
T ss_pred EhHHhCCceeeeEEEeCCCCCChHHHHHHHHHhCCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccc
Confidence 3445666667777677766 67788888876544333332222377555444443 24444444 67788999984
No 426
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=28.31 E-value=1.3e+02 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
++++++++.+++.++. +..|.+-||-+-+...+
T Consensus 230 ~~~~~~~~~v~~~l~~---~~~i~GfGH~vy~~~DP 262 (368)
T TIGR01800 230 GDPDKAEAWIRKALEN---KERIMGFGHRVYKTYDP 262 (368)
T ss_pred cChHHHHHHHHHHHHC---CCccCCCCCCCCCCCCc
Confidence 5667777777776665 66788999999765444
No 427
>PRK06949 short chain dehydrogenase; Provisional
Probab=28.26 E-value=2.1e+02 Score=19.98 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred hhHHHHhccCCceEeeecccC-hhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCccC--
Q psy15360 16 YALEELNQTKYDIVGIDWTIE-PSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHGIY-- 90 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d-~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcgi~-- 90 (109)
.+...+.+.|..++-++-..+ +.++.+.+. ...+++..... +.+++++++..+++.+.+++ ..+|.+.|-...
T Consensus 24 ~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~ 101 (258)
T PRK06949 24 RFAQVLAQAGAKVVLASRRVERLKELRAEIE--AEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQK 101 (258)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 477778888998776653211 122222221 11123222222 35678888888887776655 455555553321
Q ss_pred -CCCChHHHHHHHH
Q psy15360 91 -PDMDPEHVQVLID 103 (109)
Q Consensus 91 -~~tp~eNi~a~v~ 103 (109)
.+++.+....+++
T Consensus 102 ~~~~~~~~~~~~~~ 115 (258)
T PRK06949 102 LVDVTPADFDFVFD 115 (258)
T ss_pred cccCCHHHHHHHHh
Confidence 2345565555443
No 428
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=28.23 E-value=83 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.2
Q ss_pred HHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 69 GTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 69 ~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+++.+++..-||..=.+||| |.+-+..+.+++++|
T Consensus 38 ~~~l~~Ac~~~GFF~v~nHGI----~~~li~~~~~~~~~F 73 (335)
T PLN02156 38 KTQIVKACEEFGFFKVINHGV----RPDLLTQLEQEAIGF 73 (335)
T ss_pred HHHHHHHHHHCCEEEEECCCC----CHHHHHHHHHHHHHH
Confidence 345666666678878888988 667778888877764
No 429
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.22 E-value=1.6e+02 Score=22.47 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=35.1
Q ss_pred cccc--CCCcccc-----cccHHHHHHHHHHHHHHhccccchhccCCcc-----CCCCChHHHHH---HHHHhh
Q psy15360 48 TLQG--NLDPCAL-----YASKEKLRKIGTQMAKEFGKSRYIANLGHGI-----YPDMDPEHVQV---LIDAIH 106 (109)
Q Consensus 48 ~l~G--Nidp~~L-----~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi-----~~~tp~eNi~a---~v~a~~ 106 (109)
.+|| |+-|--+ +.+++.+.++++++++. |.-|+-.|..- .+-++.|-++. .+++.+
T Consensus 16 ~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~---GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~ 86 (282)
T PRK11613 16 HVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINA---GATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIA 86 (282)
T ss_pred eEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5777 5656433 34678888888888887 77788777433 33344455444 444444
No 430
>PRK14421 acylphosphatase; Provisional
Probab=28.15 E-value=99 Score=19.74 Aligned_cols=9 Identities=0% Similarity=0.287 Sum_probs=4.1
Q ss_pred ccHHHHHHH
Q psy15360 60 ASKEKLRKI 68 (109)
Q Consensus 60 gt~e~i~~~ 68 (109)
|++++|++-
T Consensus 50 G~~~~i~~f 58 (99)
T PRK14421 50 GPADAVAEM 58 (99)
T ss_pred CCHHHHHHH
Confidence 444444443
No 431
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.09 E-value=1.1e+02 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=14.9
Q ss_pred HHhccCCceEee-----ecccChhhHhhhh
Q psy15360 20 ELNQTKYDIVGI-----DWTIEPSLARSII 44 (109)
Q Consensus 20 ~l~~~g~d~~~i-----d~~~d~~~~~~~~ 44 (109)
.+++.|+|.|-+ |..+|.+..++.+
T Consensus 81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li 110 (248)
T PRK11572 81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIM 110 (248)
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHH
Confidence 355678887755 4556665554443
No 432
>PLN02216 protein SRG1
Probab=28.08 E-value=91 Score=24.27 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 67 KIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.++++-+++..-||..=.+|||+ .+-++++.+++++|
T Consensus 69 ~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~F 106 (357)
T PLN02216 69 SEVEKLDFACKEWGFFQLVNHGID----SSFLDKVKSEIQDF 106 (357)
T ss_pred HHHHHHHHHHHHCcEEEEECCCCC----HHHHHHHHHHHHHH
Confidence 345555555666788888899876 55677777777764
No 433
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=28.04 E-value=1.4e+02 Score=20.28 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcc----ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 62 KEKLRKIGTQMAKEFGK----SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 62 ~e~i~~~~~~~l~~~~~----~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.+.+++..+.+|+.+.. .--+=..|.|+.--.+.+-.+.|++++++|
T Consensus 87 ~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~f 137 (165)
T cd02908 87 AELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREF 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHH
Confidence 56788888888887643 223345566666666778889999998876
No 434
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=27.88 E-value=1.2e+02 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
++++++++.+++.++. +.-|.+-||.+-....|
T Consensus 249 ~~~~~~~~~v~~~~~~---~~ri~GFGHrvyk~~DP 281 (382)
T cd06107 249 GTPENVPAFIERVKNG---KRRLMGFGHRVYKNYDP 281 (382)
T ss_pred CChHHHHHHHHHHHhc---CCCcCCCCCCCCCCCCc
Confidence 6778888777777654 66788999999764444
No 435
>KOG0481|consensus
Probab=27.85 E-value=41 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=30.7
Q ss_pred HhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc
Q psy15360 40 ARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 40 ~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~ 78 (109)
.|+.+++. ++-|.|+- +|+|+|-.-+....+.++...+
T Consensus 351 srK~LpDg~~lRGDINV-LLLGDPgtAKSQlLKFvEkvsP 389 (729)
T KOG0481|consen 351 SRKRLPDGVTLRGDINV-LLLGDPGTAKSQLLKFVEKVSP 389 (729)
T ss_pred ccccCCCcceeccceeE-EEecCCchhHHHHHHHHHhcCc
Confidence 46777888 89998886 6689988888888888888764
No 436
>PRK09569 type I citrate synthase; Reviewed
Probab=27.75 E-value=1.3e+02 Score=24.46 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
+++++++.+++.++. +.-|.+-||.+-....|.
T Consensus 294 ~~~~~~~~v~~~l~~---~~ri~GFGHrvyk~~DPR 326 (437)
T PRK09569 294 TKEQVEQALWDTLNA---GQVIPGYGHAVLRKTDPR 326 (437)
T ss_pred CHHHHHHHHHHHHhc---CCcccCCCCCCCCCCCCc
Confidence 566777777766654 667889999997655544
No 437
>PRK14847 hypothetical protein; Provisional
Probab=27.70 E-value=1.2e+02 Score=23.67 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=42.6
Q ss_pred CCcEEEeecch-hhhHHHHhccCCceEeeecc-cChhh---HhhhhcCCccccCC---Ccc--cc-cccHHHHHHHHHHH
Q psy15360 4 DVPMTIFAKGA-HYALEELNQTKYDIVGIDWT-IEPSL---ARSIIKNKTLQGNL---DPC--AL-YASKEKLRKIGTQM 72 (109)
Q Consensus 4 ~~pvi~~~~g~-~~~l~~l~~~g~d~~~id~~-~d~~~---~~~~~g~~~l~GNi---dp~--~L-~gt~e~i~~~~~~~ 72 (109)
+.|-+.|+... ..+...|.++|+|.+.+.+- ++-.+ .++.. ..+. ++. .+ ...+++|++.++..
T Consensus 45 Q~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~-----~~~~~~~~~~i~~~~r~~~~dId~a~e~~ 119 (333)
T PRK14847 45 QALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLI-----DERRIPDDVTIEALTQSRPDLIARTFEAL 119 (333)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHH-----HhCCCCCCcEEEEEecCcHHHHHHHHHHh
Confidence 34555566554 35777788999999988753 32222 22222 2222 232 33 35678888876644
Q ss_pred HHHhccccchhccCC
Q psy15360 73 AKEFGKSRYIANLGH 87 (109)
Q Consensus 73 l~~~~~~g~Il~~gc 87 (109)
.+.-...-+|+-+.-
T Consensus 120 ~~~~~~~Vhi~~p~S 134 (333)
T PRK14847 120 AGSPRAIVHLYNPIA 134 (333)
T ss_pred CCCCCCEEEEEecCC
Confidence 432112345554443
No 438
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=27.69 E-value=3.3e+02 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcEEEeecch--hhhHHHHhccCCceEeeecc-cChhhHhh
Q psy15360 4 DVPMTIFAKGA--HYALEELNQTKYDIVGIDWT-IEPSLARS 42 (109)
Q Consensus 4 ~~pvi~~~~g~--~~~l~~l~~~g~d~~~id~~-~d~~~~~~ 42 (109)
++.+-+-+.|. ...++.|.+.|+|.+.++-+ +|.+..++
T Consensus 110 ~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~ 151 (442)
T TIGR01290 110 DVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEK 151 (442)
T ss_pred CCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhh
Confidence 34444445554 34667777788887766532 34444443
No 439
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=27.67 E-value=1.5e+02 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=10.4
Q ss_pred ChhhHhhhhcCCccccCCCc
Q psy15360 36 EPSLARSIIKNKTLQGNLDP 55 (109)
Q Consensus 36 d~~~~~~~~g~~~l~GNidp 55 (109)
|++++|+.|. ...++++|
T Consensus 14 ~~e~vk~~F~--~~~~~Vs~ 31 (71)
T PF04282_consen 14 DPEEVKEEFK--KLFSDVSA 31 (71)
T ss_pred CHHHHHHHHH--HHHCCCCH
Confidence 5666666664 34555555
No 440
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=27.63 E-value=57 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=20.1
Q ss_pred EeeecccChhhHhhhhcCC-c--------------cccCCCccc
Q psy15360 29 VGIDWTIEPSLARSIIKNK-T--------------LQGNLDPCA 57 (109)
Q Consensus 29 ~~id~~~d~~~~~~~~g~~-~--------------l~GNidp~~ 57 (109)
+..|.++|++++++.+|.+ . ..|.+.|.-
T Consensus 61 ~p~~~~Ldlkkla~~~G~kk~~ma~~~~v~~~TGy~vGGv~P~G 104 (155)
T COG2606 61 VPGDQRLDLKKLAKALGAKKAEMADPEEVQRLTGYVVGGVSPFG 104 (155)
T ss_pred EeCcCccCHHHHHHHhCCcccccCCHHHHHHHhCCcccCcCCCC
Confidence 3446777888877777764 3 678888863
No 441
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.57 E-value=2.9e+02 Score=22.85 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred hHHHHhccCCceEeeec---ccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHHHHHhccccchhccCCccCC
Q psy15360 17 ALEELNQTKYDIVGIDW---TIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYP 91 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~---~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~ 91 (109)
-|..-.+.|+|.+.+.+ .-|+.++|+.+.. .|+-+..++ .-++|.|.. ..++++.. -|.+.+=| ++.-
T Consensus 180 dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~---~~~~~~~iiaKIE~~eav~N-ldeIi~~S--DGIMVARG-DLGV 252 (477)
T COG0469 180 DLKFGLEQGVDFVALSFVRNAEDVEEVREILAE---TGGRDVKIIAKIENQEAVDN-LDEIIEAS--DGIMVARG-DLGV 252 (477)
T ss_pred HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHH---hCCCCceEEEeecCHHHHhH-HHHHHHhc--CceEEEec-cccc
Confidence 34444567888775543 3488888887743 455554444 357777777 67777763 35666666 7778
Q ss_pred CCChHHH----HHHHHHhhhhC
Q psy15360 92 DMDPEHV----QVLIDAIHDAL 109 (109)
Q Consensus 92 ~tp~eNi----~a~v~a~~~~~ 109 (109)
..|.|.| +.+++.+++++
T Consensus 253 Eip~e~Vp~~QK~iI~~~~~~g 274 (477)
T COG0469 253 EIPLEEVPIIQKRIIRKARRAG 274 (477)
T ss_pred ccCHHHhhHHHHHHHHHHHHcC
Confidence 8999998 77788877764
No 442
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=27.46 E-value=2.6e+02 Score=20.79 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=42.5
Q ss_pred CCcEEEeecchhhhHHHHhccCC-ceEeeecccC-hhhHhhhhc-----CC--ccccC--------CCcccccccHHHHH
Q psy15360 4 DVPMTIFAKGAHYALEELNQTKY-DIVGIDWTIE-PSLARSIIK-----NK--TLQGN--------LDPCALYASKEKLR 66 (109)
Q Consensus 4 ~~pvi~~~~g~~~~l~~l~~~g~-d~~~id~~~d-~~~~~~~~g-----~~--~l~GN--------idp~~L~gt~e~i~ 66 (109)
+..|+=..||+..+.-.++..|. .++.+|..-. +..+++.+. .+ ...++ +|-.+.....+.+.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l~ 239 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVIK 239 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHHH
Confidence 44577788888643334555665 5777774321 333443321 11 22232 22222223344555
Q ss_pred HHHHHHHHHhccccchhccC
Q psy15360 67 KIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 67 ~~~~~~l~~~~~~g~Il~~g 86 (109)
+...++.+.++++|+++-+|
T Consensus 240 ~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEe
Confidence 55556666666777777666
No 443
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.45 E-value=1.5e+02 Score=23.21 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 60 ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
-++|+|.++++...+. +-..+-|.+|. -|...+.|-+..++++++++
T Consensus 104 ls~eEI~~~a~~~~~~-Gv~~i~lvgGe-~p~~~~~e~l~~~i~~Ik~~ 150 (371)
T PRK09240 104 LDEEEIEREMAAIKKL-GFEHILLLTGE-HEAKVGVDYIRRALPIAREY 150 (371)
T ss_pred CCHHHHHHHHHHHHhC-CCCEEEEeeCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3789999998887655 22334333342 23357899999999888753
No 444
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=27.39 E-value=91 Score=20.89 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=43.2
Q ss_pred chhhhHHHHh-ccCCceEeeecc------cChhhHhhhhcCC-ccccCCCccc-cc-ccHHHHHHHHHHHHHHhccccch
Q psy15360 13 GAHYALEELN-QTKYDIVGIDWT------IEPSLARSIIKNK-TLQGNLDPCA-LY-ASKEKLRKIGTQMAKEFGKSRYI 82 (109)
Q Consensus 13 g~~~~l~~l~-~~g~d~~~id~~------~d~~~~~~~~g~~-~l~GNidp~~-L~-gt~e~i~~~~~~~l~~~~~~g~I 82 (109)
++...+.... +..+|++++|+. .+-..++...... .+-=++.|.+ .- ..-..+...+++++...++.+.|
T Consensus 33 ~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~ii 112 (150)
T PF01876_consen 33 GSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRSDGSNRRNFISNARRLIRLTKKKNII 112 (150)
T ss_dssp S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EE
T ss_pred CCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4445666655 455999999873 2334444444433 3333444533 22 23355667777888776668899
Q ss_pred hccCCccCCC-CChHHHHHHH
Q psy15360 83 ANLGHGIYPD-MDPEHVQVLI 102 (109)
Q Consensus 83 l~~gcgi~~~-tp~eNi~a~v 102 (109)
+++|..-+-+ -+|..+..|.
T Consensus 113 iSSgA~~~~elr~P~dv~~l~ 133 (150)
T PF01876_consen 113 ISSGASSPLELRSPRDVINLL 133 (150)
T ss_dssp EE---SSGGG---HHHHHHHH
T ss_pred EEcCCCChhhCcCHHHHHHHH
Confidence 9999776543 3444444443
No 445
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=27.39 E-value=1.3e+02 Score=24.22 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=32.1
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|+-+-. +| .++++++++.+++.++. +.-|.+-||.+-....|.
T Consensus 252 plHGGA~e~v~~~l~ei~~~~~~~~~v~~~~~~---~~ri~GFGHrvYk~~DPR 302 (410)
T cd06115 252 PLHGGANEAVLRMLAEIGTVENIPAFIEGVKNR---KRKLSGFGHRVYKNYDPR 302 (410)
T ss_pred CcccchHHHHHHHHHHhCChHHHHHHHHHHHhc---CCcccCCCCCCCCCCCcc
Confidence 566666543 23 37888888888887665 667889999997655543
No 446
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.31 E-value=37 Score=24.99 Aligned_cols=46 Identities=9% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcc-ccchhccCCc------------cCCCCChHHHHHHHHHhhhh
Q psy15360 63 EKLRKIGTQMAKEFGK-SRYIANLGHG------------IYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 63 e~i~~~~~~~l~~~~~-~g~Il~~gcg------------i~~~tp~eNi~a~v~a~~~~ 108 (109)
+++.+..+++.+.... ||||.+..-. +.-..|.+++..|++...+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~ 117 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSEL 117 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhcc
Confidence 4444554544444444 6888876642 44568999999999987654
No 447
>PRK14035 citrate synthase; Provisional
Probab=27.29 E-value=1.3e+02 Score=23.76 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=30.1
Q ss_pred ccccCCCc-c--cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChH
Q psy15360 48 TLQGNLDP-C--AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPE 96 (109)
Q Consensus 48 ~l~GNidp-~--~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~e 96 (109)
.+.|+-+- + +| .++++++++.+++.++. +..|.+-||.+-....|.
T Consensus 216 plHGGA~e~v~~~l~~i~~~~~~~~~v~~~~~~---~~~l~GFGHrvyk~~DPR 266 (371)
T PRK14035 216 PLHGGANERVMDMLSEIRSIGDVDAYLDEKFAN---KEKIMGFGHRVYKDGDPR 266 (371)
T ss_pred ccccChHHHHHHHHHHhCChHHHHHHHHHHHhc---CCcccCCCCCCCCCCCcc
Confidence 45555443 2 23 36778887777777655 667889999997655443
No 448
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=27.27 E-value=1.1e+02 Score=23.75 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=40.3
Q ss_pred hccCCceEeeec-ccCh-------hhHhhhhcCCccccCCC-ccccccc------HHHHHHHHHHHHHHhccccchhccC
Q psy15360 22 NQTKYDIVGIDW-TIEP-------SLARSIIKNKTLQGNLD-PCALYAS------KEKLRKIGTQMAKEFGKSRYIANLG 86 (109)
Q Consensus 22 ~~~g~d~~~id~-~~d~-------~~~~~~~g~~~l~GNid-p~~L~gt------~e~i~~~~~~~l~~~~~~g~Il~~g 86 (109)
.+.|+|.+.+.. ..|. +++++.+. .++-.+| |.++.+| ++.+++..+ .+++++-|+++
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk--~V~eavd~PL~Id~s~n~~kD~evleaale----~~~g~~pLInS- 158 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVE--EVLQAVDVPLIIGGSGNPEKDAEVLEKVAE----AAEGERCLLGS- 158 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHH--HHHHhCCCCEEEecCCCCCCCHHHHHHHHH----HhCCCCCEEEE-
Confidence 367888876642 2222 22333332 4555666 3334333 444444333 22323334443
Q ss_pred CccCCCCChHHHHHHHHHhhhhC
Q psy15360 87 HGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 87 cgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+..||.+++..++++|+
T Consensus 159 ------at~en~~~i~~lA~~y~ 175 (319)
T PRK04452 159 ------AEEDNYKKIAAAAMAYG 175 (319)
T ss_pred ------CCHHHHHHHHHHHHHhC
Confidence 45889999999999985
No 449
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.16 E-value=2.2e+02 Score=19.81 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=46.1
Q ss_pred EEEeecchh----hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-cc
Q psy15360 7 MTIFAKGAH----YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SR 80 (109)
Q Consensus 7 vi~~~~g~~----~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g 80 (109)
.++..+++. .+...+.+.|..++.++-. ...++.+.+. .+.+.+....+ +.+++++.+..++..+..++ ..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 83 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVE--ALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI 83 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 445545432 3778888899998877642 2223333221 11223333333 46788898888888777665 55
Q ss_pred chhccCCc
Q psy15360 81 YIANLGHG 88 (109)
Q Consensus 81 ~Il~~gcg 88 (109)
.|.+.|-.
T Consensus 84 li~~ag~~ 91 (248)
T TIGR01832 84 LVNNAGII 91 (248)
T ss_pred EEECCCCC
Confidence 66666643
No 450
>PRK12744 short chain dehydrogenase; Provisional
Probab=27.13 E-value=2.3e+02 Score=19.98 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=38.6
Q ss_pred hhHHHHhccCCceEeeeccc--ChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccC
Q psy15360 16 YALEELNQTKYDIVGIDWTI--EPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLG 86 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~--d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~g 86 (109)
.+...+.+.|.+++.++... +.+.+.+..... ....++....+ +.+++++++.+.++.+.+++ ...|.+.|
T Consensus 23 ~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 23 LIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred HHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence 47777888999977775432 112222211100 11112322223 46788899888888877665 44555544
No 451
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=27.10 E-value=3.1e+02 Score=21.95 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=42.4
Q ss_pred CCcEEEeecchh-hhHHHHhccCCceEeeecccChhhHhhhhcCCccccCCCcccc-c--ccHHHHHHHHHH
Q psy15360 4 DVPMTIFAKGAH-YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCAL-Y--ASKEKLRKIGTQ 71 (109)
Q Consensus 4 ~~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~GNidp~~L-~--gt~e~i~~~~~~ 71 (109)
+.-|...-||-. ++|..|.+-|+++.-+-+.++.++..+.-++. ..| + |+|+.++.++..
T Consensus 179 ~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDG--------iflSNGPGDP~~~~~~i~~ 242 (368)
T COG0505 179 GKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDG--------IFLSNGPGDPAPLDYAIET 242 (368)
T ss_pred CcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCE--------EEEeCCCCChhHHHHHHHH
Confidence 445677788875 79999999999999999999998876544432 123 3 566666555443
No 452
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=1.1e+02 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=18.6
Q ss_pred cEEEeecc---hhhhHHHHhccCCceEee
Q psy15360 6 PMTIFAKG---AHYALEELNQTKYDIVGI 31 (109)
Q Consensus 6 pvi~~~~g---~~~~l~~l~~~g~d~~~i 31 (109)
.+++|+|. +..+++.|.+.|++..-+
T Consensus 5 kiLlH~CCAPcs~y~le~l~~~~~~i~~y 33 (204)
T COG1636 5 KLLLHSCCAPCSGYVLEKLRDSGIKITIY 33 (204)
T ss_pred eeEEEeecCCCcHHHHHHHHhcCcceEEE
Confidence 35566553 456999999999998544
No 453
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.01 E-value=1.2e+02 Score=23.29 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=46.2
Q ss_pred CCcEEEee-cchh-hhHHHHhccCCceEeeecccChhh---HhhhhcCCccccCCCccccc-ccHHHHHHHHHHHHHHhc
Q psy15360 4 DVPMTIFA-KGAH-YALEELNQTKYDIVGIDWTIEPSL---ARSIIKNKTLQGNLDPCALY-ASKEKLRKIGTQMAKEFG 77 (109)
Q Consensus 4 ~~pvi~~~-~g~~-~~l~~l~~~g~d~~~id~~~d~~~---~~~~~g~~~l~GNidp~~L~-gt~e~i~~~~~~~l~~~~ 77 (109)
++|..+|. +|.. .-+..-.+.|+.=+.+|-.+.++- .|+.+-.+. -.+||...+ -..+.+++.+++-++.++
T Consensus 204 ~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~~--k~~DpR~~l~~a~~am~~~v~~~~~~fg 281 (286)
T COG0191 204 SLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENP--KEYDPRKYLKPAIEAMKEVVKEKIKEFG 281 (286)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHHHHhCc--ccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 37877774 3543 345555679998888886543332 233332212 468998544 456788888888888876
Q ss_pred c
Q psy15360 78 K 78 (109)
Q Consensus 78 ~ 78 (109)
.
T Consensus 282 s 282 (286)
T COG0191 282 S 282 (286)
T ss_pred c
Confidence 3
No 454
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.96 E-value=1.1e+02 Score=19.47 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred cEEEeecchhh-hHHHHhccCCceEeeecccChhhHh
Q psy15360 6 PMTIFAKGAHY-ALEELNQTKYDIVGIDWTIEPSLAR 41 (109)
Q Consensus 6 pvi~~~~g~~~-~l~~l~~~g~d~~~id~~~d~~~~~ 41 (109)
|-.++..|... +-+.+.+.++|++-+|....+...+
T Consensus 37 p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~r 73 (95)
T PF13167_consen 37 PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQR 73 (95)
T ss_pred cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHH
Confidence 55666667654 4444556778877777766555443
No 455
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.94 E-value=98 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 68 IGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 68 ~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
.++++.+++..-||..=.+|||+ .|-+..+.+.+++|
T Consensus 43 ~~~~l~~Ac~~~GFf~v~nHGi~----~~l~~~~~~~~~~F 79 (345)
T PLN02750 43 VASKIGEACKKWGFFQVINHGVP----SELRQRVEKVAKEF 79 (345)
T ss_pred HHHHHHHHHHhCCEEEEEcCCCC----HHHHHHHHHHHHHH
Confidence 34566666666788777889984 66788888777764
No 456
>KOG0622|consensus
Probab=26.90 E-value=2.8e+02 Score=22.71 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=45.3
Q ss_pred EEe--ecchhhhHHHHhccCCceEeeecccChhhHhhhhcCC--ccccCCCcc------cc-cc-cHHHHHHHHHHHHHH
Q psy15360 8 TIF--AKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK--TLQGNLDPC------AL-YA-SKEKLRKIGTQMAKE 75 (109)
Q Consensus 8 i~~--~~g~~~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~--~l~GNidp~------~L-~g-t~e~i~~~~~~~l~~ 75 (109)
|+| .|-+...+.+-++-|+....+|....+.+.++..++- .|.=+.|-. -+ || +.+ .++.+|+.
T Consensus 126 iIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~----~~~~lLd~ 201 (448)
T KOG0622|consen 126 IIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLD----NCRHLLDM 201 (448)
T ss_pred eEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCCcccccccCccCCCHH----HHHHHHHH
Confidence 445 4556678888899999999999998888888877764 333333321 12 55 333 56777777
Q ss_pred hcc
Q psy15360 76 FGK 78 (109)
Q Consensus 76 ~~~ 78 (109)
++.
T Consensus 202 ak~ 204 (448)
T KOG0622|consen 202 AKE 204 (448)
T ss_pred HHH
Confidence 653
No 457
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=26.90 E-value=1.7e+02 Score=19.97 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=33.4
Q ss_pred cchhhhHHHHhccCCceEeeeccc---------ChhhHhhhhcCC--ccccCCCcc----cccccHHH
Q psy15360 12 KGAHYALEELNQTKYDIVGIDWTI---------EPSLARSIIKNK--TLQGNLDPC----ALYASKEK 64 (109)
Q Consensus 12 ~g~~~~l~~l~~~g~d~~~id~~~---------d~~~~~~~~g~~--~l~GNidp~----~L~gt~e~ 64 (109)
+|.+-+...+.+.|+.+++.|.-. -..++++.+|.. .-.|.+|=. .+|.+++.
T Consensus 10 sGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 77 (179)
T cd02022 10 SGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK 77 (179)
T ss_pred CCHHHHHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence 344556677777899988887422 125567778776 247888853 23566544
No 458
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=26.87 E-value=98 Score=25.50 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=31.9
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCCcccc--CCCcccccccHHHHHHHHHHHHHH
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQG--NLDPCALYASKEKLRKIGTQMAKE 75 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~~l~G--Nidp~~L~gt~e~i~~~~~~~l~~ 75 (109)
..|+.|+++|++++.+..-..-.... .| ..+.. .+||. +||.+++++-++++=+.
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~--~g-Y~~~d~~~id~~--~Gt~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKD--NG-YDVSDYYAINPL--FGTMADFEELVSEAKKR 87 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCC--CC-CCccccCccCcc--cCCHHHHHHHHHHHHHC
Confidence 57889999999999886433211000 00 01111 34553 68988887777755443
No 459
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=26.84 E-value=1.7e+02 Score=18.30 Aligned_cols=43 Identities=7% Similarity=0.018 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccccchhccCCcc---CCCCChHHHHHHHHHhhh
Q psy15360 65 LRKIGTQMAKEFGKSRYIANLGHGI---YPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 65 i~~~~~~~l~~~~~~g~Il~~gcgi---~~~tp~eNi~a~v~a~~~ 107 (109)
+...+..+|+.+-..|+|-.--|+. |-.||.+..+++++.|+.
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqqARrLLD~V~~ 57 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQARRLLDLVKA 57 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHHHHHHHHHHHHH
Confidence 4445556666655567777777763 457999999999998864
No 460
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=26.84 E-value=66 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=16.0
Q ss_pred cchhccCCccC--CCCChHHHHHHHHHhhhh
Q psy15360 80 RYIANLGHGIY--PDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 80 g~Il~~gcgi~--~~tp~eNi~a~v~a~~~~ 108 (109)
.+|+...|++. |....++++.+++.+.+|
T Consensus 18 ~~~~aiDh~~l~gp~~~~~~~~~~~~~a~~~ 48 (258)
T TIGR01949 18 TVIVPMDHGVSNGPIKGLVDIRKTVNEVAEG 48 (258)
T ss_pred EEEEECCCccccCCCCCcCCHHHHHHHHHhc
Confidence 45556666654 345555666555555544
No 461
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=26.84 E-value=1.1e+02 Score=23.61 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=27.6
Q ss_pred CCcEEEeecch--h-hhHHHHhccCCceEeeeccc----ChhhHhhhh
Q psy15360 4 DVPMTIFAKGA--H-YALEELNQTKYDIVGIDWTI----EPSLARSII 44 (109)
Q Consensus 4 ~~pvi~~~~g~--~-~~l~~l~~~g~d~~~id~~~----d~~~~~~~~ 44 (109)
++||+.|+-|. + .-...+.++|++++.+.... |+.+..+.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akaf 244 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAI 244 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHH
Confidence 58988886663 3 46677778999998886543 555544444
No 462
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=26.81 E-value=55 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.1
Q ss_pred CCCChHHHHHHHHHhhhhC
Q psy15360 91 PDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 91 ~~tp~eNi~a~v~a~~~~~ 109 (109)
.++.+||++++++..++|+
T Consensus 88 r~~~~en~eal~k~ik~ll 106 (113)
T COG4352 88 RNRNPENFEALVKRIKELL 106 (113)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 3688999999999988874
No 463
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=26.78 E-value=1.6e+02 Score=19.42 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcc----ccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 63 EKLRKIGTQMAKEFGK----SRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 63 e~i~~~~~~~l~~~~~----~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
+.+++..+++|+.+.. .--+=..|.|+---.|.+-.+.|++++++|
T Consensus 88 ~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 88 KILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 6688888888887643 223344566666666677779999999876
No 464
>PLN02150 terpene synthase/cyclase family protein
Probab=26.66 E-value=1.3e+02 Score=18.99 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
|.|+-+++.+++++..++. +|-.|=-+...|..=+++.++.+
T Consensus 20 seeeA~~~i~~li~~~WK~---iN~e~l~~~~~p~~~~~~~~Nla 61 (96)
T PLN02150 20 TKEEAVSELKKMIRDNYKI---VMEEFLTIKDVPRPVLVRCLNLA 61 (96)
T ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCHHHHHHHHHHH
Confidence 7888888888888877541 22222112235555555555544
No 465
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=26.58 E-value=1.1e+02 Score=23.09 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhh
Q psy15360 69 GTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 69 ~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~ 108 (109)
++++.+++..-||..=.+||| |.+-+..+.+.+++|
T Consensus 18 ~~~l~~Ac~~~GfF~l~nHGi----~~~l~~~~~~~~~~F 53 (300)
T PLN02365 18 IEKLREACERWGCFRVVNHGV----SLSLMAEMKKVVRSL 53 (300)
T ss_pred HHHHHHHHHHCCEEEEEcCCC----CHHHHHHHHHHHHHH
Confidence 455666666667877778888 577788888877764
No 466
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=26.58 E-value=58 Score=25.39 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=22.7
Q ss_pred cccCCCcccccccHHHHHHHHHHHHHHhcc
Q psy15360 49 LQGNLDPCALYASKEKLRKIGTQMAKEFGK 78 (109)
Q Consensus 49 l~GNidp~~L~gt~e~i~~~~~~~l~~~~~ 78 (109)
+.-=.||..|+-|.+++++. +++++.++.
T Consensus 22 f~~itDP~~lf~s~~~L~~a-~~ll~~yr~ 50 (318)
T TIGR00798 22 FFEITNPLTLFSSEKQLEKA-REIVEDYKA 50 (318)
T ss_pred HHhhCChhhhcCCHHHHHHH-HHHHHHHhc
Confidence 44467999898888888765 788988775
No 467
>PRK14428 acylphosphatase; Provisional
Probab=26.55 E-value=1e+02 Score=19.61 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q psy15360 60 ASKEKLRKIGT 70 (109)
Q Consensus 60 gt~e~i~~~~~ 70 (109)
|+++.|++-.+
T Consensus 54 G~~~~i~~fi~ 64 (97)
T PRK14428 54 GSSDAVQALVE 64 (97)
T ss_pred cCHHHHHHHHH
Confidence 55544444433
No 468
>KOG4115|consensus
Probab=26.49 E-value=76 Score=20.48 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcc-ccchhccCCccCCCCChHHHHHHH
Q psy15360 64 KLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLI 102 (109)
Q Consensus 64 ~i~~~~~~~l~~~~~-~g~Il~~gcgi~~~tp~eNi~a~v 102 (109)
++++..++ +....+ -|+|+.-++|+|-.|..+|=.+..
T Consensus 4 ~vEe~~~R-~qs~~gV~giiv~d~~GvpikTt~d~~~t~~ 42 (97)
T KOG4115|consen 4 EVEETLKR-LQSYKGVTGIIVVDNAGVPIKTTLDNTTTQQ 42 (97)
T ss_pred HHHHHHHH-HhccCCceeEEEECCCCcEeEeccCchHHHH
Confidence 44444444 344444 689999999999999888765544
No 469
>PLN02461 Probable pyruvate kinase
Probab=26.46 E-value=3.2e+02 Score=22.72 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=54.8
Q ss_pred HhccCCceEeeec---ccChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 21 LNQTKYDIVGIDW---TIEPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 21 l~~~g~d~~~id~---~~d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
-.+.++|.+.+.+ .-|+.++|+.++.. |. ++.++ .-+++.++ ...++++.. -|.+++=| ++.-..|.
T Consensus 203 ~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~---~~-~~~IiAKIE~~~av~-nl~eIi~~s--DgIMVARG-DLGvEip~ 274 (511)
T PLN02461 203 GVPNKIDFIALSFVRKGSDLVEVRKVLGEH---AK-SILLISKVENQEGLD-NFDDILAES--DAFMVARG-DLGMEIPI 274 (511)
T ss_pred HhhcCCCEEEECCCCCHHHHHHHHHHHHhC---CC-CCCEEEEECCHHHHH-HHHHHHHhc--CEEEEecc-ccccccCH
Confidence 3578999886654 35788888888643 21 44443 46888886 557788763 36777777 78889999
Q ss_pred HHH----HHHHHHhhhh
Q psy15360 96 EHV----QVLIDAIHDA 108 (109)
Q Consensus 96 eNi----~a~v~a~~~~ 108 (109)
|.+ +.+++.++++
T Consensus 275 e~vp~~Qk~II~~c~~~ 291 (511)
T PLN02461 275 EKIFLAQKMMIYKCNLA 291 (511)
T ss_pred HHhHHHHHHHHHHHHHc
Confidence 998 4556665554
No 470
>KOG1706|consensus
Probab=26.44 E-value=75 Score=25.15 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.3
Q ss_pred EEEeecch--hhhHHHHhccCCceEee----ecccChhhHhhhh
Q psy15360 7 MTIFAKGA--HYALEELNQTKYDIVGI----DWTIEPSLARSII 44 (109)
Q Consensus 7 vi~~~~g~--~~~l~~l~~~g~d~~~i----d~~~d~~~~~~~~ 44 (109)
|+-+++|- +-+|.-|++-|.+++.+ .+.-|+.+|++..
T Consensus 9 VLAySGgLDTscil~WLkeqGyeViay~AnvGQ~edfe~ar~kA 52 (412)
T KOG1706|consen 9 VLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQKEDFEEARKKA 52 (412)
T ss_pred EEEecCCcCchhhhHHHHhcCceEEEeeccccchhhHHHHHHhh
Confidence 45666663 44899999999999855 5666888887754
No 471
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=1.5e+02 Score=19.10 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=13.7
Q ss_pred cchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 80 RYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 80 g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
.|-+++-+.+.-+ +++-+-+.++.+|+
T Consensus 36 ky~~~pm~T~iEg-~~del~~~ik~~~E 62 (100)
T COG0011 36 KYQLGPMGTVIEG-ELDELMEAVKEAHE 62 (100)
T ss_pred ceeecCcceEEEe-cHHHHHHHHHHHHH
Confidence 3455555554444 55555555555544
No 472
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.37 E-value=3.6e+02 Score=22.09 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=47.0
Q ss_pred HHHHhccCCceEeee-cccCh---hhHhhhhcCC--ccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCccC
Q psy15360 18 LEELNQTKYDIVGID-WTIEP---SLARSIIKNK--TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHGIY 90 (109)
Q Consensus 18 l~~l~~~g~d~~~id-~~~d~---~~~~~~~g~~--~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~ 90 (109)
++...++|+|.|.+- ...|+ ..+.+...+. .++|++.-..- .-+++.+.+.++++.+. |-..+...-...
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~---Gad~I~i~Dt~G 177 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDM---GVDSICIKDMAG 177 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc---CCCEEEECCccC
Confidence 566678999998763 22222 2222222222 45677643211 23667788888877765 334444443222
Q ss_pred CCCChHHHHHHHHHhhh
Q psy15360 91 PDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 91 ~~tp~eNi~a~v~a~~~ 107 (109)
-..|+.+..++.++++
T Consensus 178 -~l~P~~v~~Lv~~lk~ 193 (467)
T PRK14041 178 -LLTPKRAYELVKALKK 193 (467)
T ss_pred -CcCHHHHHHHHHHHHH
Confidence 3445567777777654
No 473
>PRK07229 aconitate hydratase; Validated
Probab=26.34 E-value=1e+02 Score=26.28 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=43.9
Q ss_pred hHHHHhccCCceEeeeccc-----ChhhHhhhhcCCccccCCCcccccccHHHHHHHHH-HHHHHhcc-ccchhccCCcc
Q psy15360 17 ALEELNQTKYDIVGIDWTI-----EPSLARSIIKNKTLQGNLDPCALYASKEKLRKIGT-QMAKEFGK-SRYIANLGHGI 89 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~-----d~~~~~~~~g~~~l~GNidp~~L~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcgi 89 (109)
-+..+....++...|..|+ |+..|.+.+.++.+.=++...+--||.+...+..+ -+++.+.. |-.|.++||+.
T Consensus 280 pv~e~~~~~I~~a~IGSCTN~~~~Dl~~aA~iL~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~ 359 (646)
T PRK07229 280 PVSEVAGIKVDQVLIGSCTNSSYEDLMRAASILKGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGP 359 (646)
T ss_pred EhHHhCCCeEEEEEEecCCCCChHHHHHHHHHhcCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccc
Confidence 3455666677777787776 66778887765544334443233477544444333 24444444 66788999984
No 474
>PRK14422 acylphosphatase; Provisional
Probab=26.32 E-value=1.1e+02 Score=19.14 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=4.0
Q ss_pred ccHHHHHHH
Q psy15360 60 ASKEKLRKI 68 (109)
Q Consensus 60 gt~e~i~~~ 68 (109)
|+.+.|++=
T Consensus 52 G~~~~i~~f 60 (93)
T PRK14422 52 GPRAACEKL 60 (93)
T ss_pred cCHHHHHHH
Confidence 444444333
No 475
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=26.26 E-value=60 Score=20.50 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 59 YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 59 ~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
.++.+.+.+...+.|+. |-+++.+.-+... +.+.-+++.+++++.+
T Consensus 66 ~t~~~~~~~~~~~~L~~---G~~VVt~nk~ala--~~~~~~~L~~~A~~~g 111 (117)
T PF03447_consen 66 CTSSEAVAEYYEKALER---GKHVVTANKGALA--DEALYEELREAARKNG 111 (117)
T ss_dssp -SSCHHHHHHHHHHHHT---TCEEEES-HHHHH--SHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHC---CCeEEEECHHHhh--hHHHHHHHHHHHHHcC
Confidence 47778888888888876 6666666655433 8888888888887753
No 476
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=26.22 E-value=1.2e+02 Score=22.93 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHhc-c-ccchhccCCcc--CCCCChHHHHHHHHHhhhhC
Q psy15360 61 SKEKLRKIGTQMAKEFG-K-SRYIANLGHGI--YPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~-~-~g~Il~~gcgi--~~~tp~eNi~a~v~a~~~~~ 109 (109)
|+++|++..++.=. .. + +-..+..-+.. ..-.|+++++++.+.+|+++
T Consensus 107 ~~~~l~~~~~~~~~-h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~g 158 (290)
T PF01212_consen 107 TPEDLEAAIEEHGA-HHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHG 158 (290)
T ss_dssp -HHHHHHHHHHHTG-TSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhccc-cCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCc
Confidence 56888876665322 21 2 33456666666 45578999999999999874
No 477
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.20 E-value=99 Score=24.59 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=33.8
Q ss_pred CCCcc-cccccHHHHHHHHHHHHHHhccc-cchhccCCccCCCCChHHHHHHHHHh
Q psy15360 52 NLDPC-ALYASKEKLRKIGTQMAKEFGKS-RYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 52 Nidp~-~L~gt~e~i~~~~~~~l~~~~~~-g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
+++-. +.+|..+.+++.++++.+.+++. -+|+++. .+.+=-+.++++++.+
T Consensus 59 ~l~E~d~V~Gg~~~L~~ai~~~~~~~~p~~I~v~ttC---~~~iiGdDi~~v~~~~ 111 (435)
T cd01974 59 SMTEDAAVFGGQNNLIDGLKNAYAVYKPDMIAVSTTC---MAEVIGDDLNAFIKNA 111 (435)
T ss_pred CCCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCc---hHhhhhccHHHHHHHH
Confidence 66654 56888888999999988887753 4455544 4555555566665544
No 478
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.98 E-value=1.5e+02 Score=18.33 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=33.8
Q ss_pred CCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhhhC
Q psy15360 53 LDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109 (109)
Q Consensus 53 idp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~~~ 109 (109)
+|-..+..+...=.+.++++++. |.+|| |+=|..+..+..+++++++++++
T Consensus 63 ~D~V~I~tp~~~h~~~~~~~l~~---g~~v~---~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 63 VDAVIIATPPSSHAEIAKKALEA---GKHVL---VEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESEEEEESSGGGHHHHHHHHHHT---TSEEE---EESSSSSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCcchHHHHHHHHHc---CCEEE---EEcCCcCCHHHHHHHHHHHHHhC
Confidence 33333333445555666667765 44444 45688899999999999998864
No 479
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=25.96 E-value=2e+02 Score=19.00 Aligned_cols=42 Identities=5% Similarity=0.109 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCC---CCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYP---DMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~---~tp~eNi~a~v~a~~~ 107 (109)
+.+.+.+.++.+.+. | + +.....+.+ +...|.+..+++.+++
T Consensus 134 ~~~~~~~~i~~~~~~---g-~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 178 (216)
T smart00729 134 TVEDVLEAVEKLREA---G-P-IKVSTDLIVGLPGETEEDFEETLKLLKE 178 (216)
T ss_pred CHHHHHHHHHHHHHh---C-C-cceEEeEEecCCCCCHHHHHHHHHHHHH
Confidence 445555555555544 2 1 222222322 3456666666666554
No 480
>PRK14448 acylphosphatase; Provisional
Probab=25.93 E-value=1.1e+02 Score=18.90 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.3
Q ss_pred ccHHHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQM 72 (109)
Q Consensus 60 gt~e~i~~~~~~~ 72 (109)
|++++|++-.+.+
T Consensus 48 G~~~~v~~f~~~l 60 (90)
T PRK14448 48 GSDAQIAAFRDWL 60 (90)
T ss_pred eCHHHHHHHHHHH
Confidence 5555554444433
No 481
>PLN00094 aconitate hydratase 2; Provisional
Probab=25.89 E-value=98 Score=27.65 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=44.7
Q ss_pred hHHHHhccCCceEeeeccc----ChhhHhhhhcCCccccCCCcccc--cccHHHHHHHHH-HHHHHhcc-ccchhccCCc
Q psy15360 17 ALEELNQTKYDIVGIDWTI----EPSLARSIIKNKTLQGNLDPCAL--YASKEKLRKIGT-QMAKEFGK-SRYIANLGHG 88 (109)
Q Consensus 17 ~l~~l~~~g~d~~~id~~~----d~~~~~~~~g~~~l~GNidp~~L--~gt~e~i~~~~~-~~l~~~~~-~g~Il~~gcg 88 (109)
-+..+....+|-+-+..|+ |+..|.+.+.++.+ ..+..++ -+|.+...+..+ -+++.+.. |.-|..+||+
T Consensus 756 ~lsev~g~kIDqVFIGSCTgrieDlraAA~ILkGrkv--~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg 833 (938)
T PLN00094 756 LLSEVTGDKIDEVFIGSCMTNIGHFRAAGKLLNDNLS--QLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCS 833 (938)
T ss_pred ECchhcCCccCeEEEEeCCCCHHHHHHHHHHHcCCCC--CCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccc
Confidence 4455666778888888886 67777777765422 2233233 377655554444 35555555 7788999998
Q ss_pred c
Q psy15360 89 I 89 (109)
Q Consensus 89 i 89 (109)
.
T Consensus 834 ~ 834 (938)
T PLN00094 834 L 834 (938)
T ss_pred c
Confidence 5
No 482
>PF03135 CagE_TrbE_VirB: CagE, TrbE, VirB family, component of type IV transporter system; InterPro: IPR018145 This domain is found in (amongst others): the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration []. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro []. Similar type IV transport systems are also found in other bacteria. This domain is also found in proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding
Probab=25.87 E-value=63 Score=22.69 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.2
Q ss_pred cChhhHhhhhcCC-ccccCCCccc-ccc-cHHHHHHHHHHHHHHhccccch
Q psy15360 35 IEPSLARSIIKNK-TLQGNLDPCA-LYA-SKEKLRKIGTQMAKEFGKSRYI 82 (109)
Q Consensus 35 ~d~~~~~~~~g~~-~l~GNidp~~-L~g-t~e~i~~~~~~~l~~~~~~g~I 82 (109)
.++.+|.+.+... ..+|.--..+ +++ |++++++.++++...+...||+
T Consensus 130 ~~l~~a~~~~~sg~~~~G~~~~~i~v~~~~~~~l~~~~~~v~~~l~~~G~~ 180 (205)
T PF03135_consen 130 EELDDALDELASGRVSFGYYHFTIVVFADDPEELDDKVAEVSSALNNLGFV 180 (205)
T ss_pred HHHHHHHHHHhCCCeeeeeeEEEEEEEcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 3667777777766 7888888764 464 7999999998887776554443
No 483
>PRK12928 lipoyl synthase; Provisional
Probab=25.86 E-value=1.5e+02 Score=22.50 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHHHhhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~a~~~ 107 (109)
+++++.+.++++.+..-+...|-+..++=.++-+.+.+..+++++++
T Consensus 88 ~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 88 DPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRA 134 (290)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHh
Confidence 56777777776555421222222222211233445667777776654
No 484
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.85 E-value=1.6e+02 Score=22.23 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=4.0
Q ss_pred ccccCCCc
Q psy15360 48 TLQGNLDP 55 (109)
Q Consensus 48 ~l~GNidp 55 (109)
.|+|.-+|
T Consensus 57 ~l~gg~~~ 64 (309)
T TIGR00423 57 CIQGGLNP 64 (309)
T ss_pred EEecCCCC
Confidence 45555444
No 485
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=25.73 E-value=83 Score=19.50 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQMAKE 75 (109)
Q Consensus 60 gt~e~i~~~~~~~l~~ 75 (109)
.|+++|+.++.+.+..
T Consensus 15 AT~~EvrdAAlQfVRK 30 (88)
T COG5552 15 ATPVEVRDAALQFVRK 30 (88)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5788888888888776
No 486
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.72 E-value=2.4e+02 Score=19.69 Aligned_cols=80 Identities=9% Similarity=0.155 Sum_probs=43.7
Q ss_pred CCcEEEeecchh-hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccccccHHHHHHHHHHHHHHhcc---
Q psy15360 4 DVPMTIFAKGAH-YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASKEKLRKIGTQMAKEFGK--- 78 (109)
Q Consensus 4 ~~pvi~~~~g~~-~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~--- 78 (109)
+.+|........ ...+.+.+.|+.++..|+. |.+...+.+.+- ++.-.+.+.. +.++... +.+++.+.+
T Consensus 22 ~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~----~~~~~~~-~~li~Aa~~agV 95 (233)
T PF05368_consen 22 GFSVRALVRDPSSDRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH----PSELEQQ-KNLIDAAKAAGV 95 (233)
T ss_dssp TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC----CCHHHHH-HHHHHHHHHHT-
T ss_pred CCCcEEEEeccchhhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch----hhhhhhh-hhHHHhhhcccc
Confidence 456666666653 5677788899999988875 667777767654 4443333211 2222222 334454432
Q ss_pred ccchhccCCcc
Q psy15360 79 SRYIANLGHGI 89 (109)
Q Consensus 79 ~g~Il~~gcgi 89 (109)
..||++.=..-
T Consensus 96 k~~v~ss~~~~ 106 (233)
T PF05368_consen 96 KHFVPSSFGAD 106 (233)
T ss_dssp SEEEESEESSG
T ss_pred ceEEEEEeccc
Confidence 56666554333
No 487
>PRK14425 acylphosphatase; Provisional
Probab=25.65 E-value=1e+02 Score=19.37 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=6.4
Q ss_pred ccHHHHHHHHHHH
Q psy15360 60 ASKEKLRKIGTQM 72 (109)
Q Consensus 60 gt~e~i~~~~~~~ 72 (109)
|+.++|++-.+.+
T Consensus 52 G~~~~le~f~~~l 64 (94)
T PRK14425 52 GPDSAISAMIERF 64 (94)
T ss_pred eCHHHHHHHHHHH
Confidence 5555554444433
No 488
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.64 E-value=2.5e+02 Score=19.90 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=40.6
Q ss_pred hhHHHHhccCCceEeeecc---------cChh---hHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccc
Q psy15360 16 YALEELNQTKYDIVGIDWT---------IEPS---LARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRY 81 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~---------~d~~---~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~ 81 (109)
.+...+.+.|..++-.+.. .+.. +..+.+. ...+.+..... +.++|++++.+.++.+.+++ ...
T Consensus 23 ~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~l 100 (256)
T PRK12859 23 AICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELL--KNGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHIL 100 (256)
T ss_pred HHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 4777788899987754311 1111 1112121 11112222223 46789999999988887776 667
Q ss_pred hhccCCc
Q psy15360 82 IANLGHG 88 (109)
Q Consensus 82 Il~~gcg 88 (109)
|.+.|..
T Consensus 101 i~~ag~~ 107 (256)
T PRK12859 101 VNNAAYS 107 (256)
T ss_pred EECCCCC
Confidence 7777753
No 489
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.63 E-value=83 Score=25.00 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=31.7
Q ss_pred cccCCCcc-cccccHHHHHHHHHHHHHHhccc-cchhccCCccCCCCChHHHHHHHHHh
Q psy15360 49 LQGNLDPC-ALYASKEKLRKIGTQMAKEFGKS-RYIANLGHGIYPDMDPEHVQVLIDAI 105 (109)
Q Consensus 49 l~GNidp~-~L~gt~e~i~~~~~~~l~~~~~~-g~Il~~gcgi~~~tp~eNi~a~v~a~ 105 (109)
..=|++-. +.+|..+.+++.++++.+.+++. -+|+++. .+.+=-+.++++++.+
T Consensus 55 ~sT~l~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttc---~~~iiGdDi~~v~~~~ 110 (429)
T cd03466 55 ASSSLNEETTVYGGEKNLKKGLKNVIEQYNPEVIGIATTC---LSETIGEDVPRIIREF 110 (429)
T ss_pred ccccCCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCc---hHHHhhcCHHHHHHHH
Confidence 34455554 45788888999999998887763 3444444 2333333344444433
No 490
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=25.38 E-value=85 Score=22.03 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=32.3
Q ss_pred ecchhhhHHHHhccCCceEeeecccChhh-------------HhhhhcCC--cc--cc--CCCccc-ccc-cHHHHHHHH
Q psy15360 11 AKGAHYALEELNQTKYDIVGIDWTIEPSL-------------ARSIIKNK--TL--QG--NLDPCA-LYA-SKEKLRKIG 69 (109)
Q Consensus 11 ~~g~~~~l~~l~~~g~d~~~id~~~d~~~-------------~~~~~g~~--~l--~G--Nidp~~-L~g-t~e~i~~~~ 69 (109)
.+-+..+++.+.+.|..+.++|..-++.+ +.+.++.. ++ -| +..|.+ +|| ++.++.+.+
T Consensus 88 iry~~~i~~~l~~~g~~v~~~dr~~ep~~~~eg~tm~w~i~~a~~~~~~~PdvIyd~G~~GkEp~i~v~g~~~~evv~kv 167 (170)
T PF10120_consen 88 IRYDEEIIEALEELGLKVSEFDRSEEPEEVKEGGTMPWGIEEAFRELGEVPDVIYDRGGWGKEPMIYVFGRDPVEVVEKV 167 (170)
T ss_dssp EE--HHHHHHHHCTTSEEEE--CCCS-CCCHTT-HHHHHHHHHHHCCTS-ECEEEE--BCTB--EEEEEESSHHHHHHHH
T ss_pred EecCHHHHHHHHHCCCeEEEECCCCCCcccccccchHHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHH
Confidence 33345688888899999999986554433 33433332 22 33 455764 464 788887776
Q ss_pred HH
Q psy15360 70 TQ 71 (109)
Q Consensus 70 ~~ 71 (109)
++
T Consensus 168 ~~ 169 (170)
T PF10120_consen 168 LK 169 (170)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 491
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.38 E-value=85 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCCcc-----CCCCChHHHHHHHHHhh
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGHGI-----YPDMDPEHVQVLIDAIH 106 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gcgi-----~~~tp~eNi~a~v~a~~ 106 (109)
+.++..++++++++. |..|+-.|.+- .+-.+.|.++.++..++
T Consensus 17 ~~~~a~~~a~~~~~~---GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~ 64 (210)
T PF00809_consen 17 SEDEAVKRAREQVEA---GADIIDIGAESTRPGATPVSEEEEMERLVPVLQ 64 (210)
T ss_dssp HHHHHHHHHHHHHHT---T-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---cCCEEEecccccCCCCCcCCHHHHHHHHHHHHH
Confidence 345566666777766 77777777665 34455666666666554
No 492
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.36 E-value=2.6e+02 Score=20.01 Aligned_cols=70 Identities=7% Similarity=0.034 Sum_probs=40.8
Q ss_pred hhHHHHhccCCceEeeeccc-ChhhHhhhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCCc
Q psy15360 16 YALEELNQTKYDIVGIDWTI-EPSLARSIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGHG 88 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~-d~~~~~~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gcg 88 (109)
.+-..+.+.|.+++-.+..- +.+.+++.... .|..-.... +.+++++++.++++.+.+++ ...|.|.|-.
T Consensus 23 a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 23 GIAKACREQGAELAFTYVVDKLEERVRKMAAE---LDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhc---cCCceEEECCCCCHHHHHHHHHHHHHHhCCCcEEEECCccC
Confidence 37777888999887543211 11222222111 122111122 46899999999999988776 6677777654
No 493
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.35 E-value=1.4e+02 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCCCChHHHHHHHH
Q psy15360 53 LDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLID 103 (109)
Q Consensus 53 idp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~eNi~a~v~ 103 (109)
+.|.....+++++.++.+++.+...-+-++.+.. .-+.|+|-++.+.+
T Consensus 101 ~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~---g~~l~~~~l~~L~~ 148 (289)
T cd00951 101 LPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRA---NAVLTADSLARLAE 148 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC---CCCCCHHHHHHHHh
Confidence 4454333467778888777777643355556521 12456676666654
No 494
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.21 E-value=1e+02 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=8.9
Q ss_pred ccCCCCChHHHHHHHHHhhhh
Q psy15360 88 GIYPDMDPEHVQVLIDAIHDA 108 (109)
Q Consensus 88 gi~~~tp~eNi~a~v~a~~~~ 108 (109)
|...-+|.+-++..++.+|+|
T Consensus 46 Gt~~l~~~~~l~eki~l~~~~ 66 (244)
T PF02679_consen 46 GTSALYPEEILKEKIDLAHSH 66 (244)
T ss_dssp TGGGGSTCHHHHHHHHHHHCT
T ss_pred ceeeecCHHHHHHHHHHHHHc
Confidence 333344444444444444443
No 495
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.20 E-value=2.8e+02 Score=23.47 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=49.8
Q ss_pred hHHHHhccCCceEee-ecccChhhHh------hhhcCCccccCCCcccc-cccHHHHHHHHHHHHHHhccccchhccCCc
Q psy15360 17 ALEELNQTKYDIVGI-DWTIEPSLAR------SIIKNKTLQGNLDPCAL-YASKEKLRKIGTQMAKEFGKSRYIANLGHG 88 (109)
Q Consensus 17 ~l~~l~~~g~d~~~i-d~~~d~~~~~------~~~g~~~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg 88 (109)
+++...+.|+|+|-+ |...|+...+ +..|. ..+|+|-=..- .-|++.+.+.++++.+. |-.+++..-.
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~t~e~~~~~ak~l~~~---Gad~I~IkDt 176 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK-HAQGAICYTTSPVHTLDNFLELGKKLAEM---GCDSIAIKDM 176 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC-EEEEEEEecCCCCCCHHHHHHHHHHHHHc---CCCEEEeCCc
Confidence 566677899999955 5555443322 22332 45555221111 34788888888888776 4445554432
Q ss_pred cCCCCChHHHHHHHHHhhh
Q psy15360 89 IYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 89 i~~~tp~eNi~a~v~a~~~ 107 (109)
. --..|+.+..++.++++
T Consensus 177 a-G~l~P~~v~~lv~alk~ 194 (596)
T PRK14042 177 A-GLLTPTVTVELYAGLKQ 194 (596)
T ss_pred c-cCCCHHHHHHHHHHHHh
Confidence 2 23455667777777764
No 496
>PLN02456 citrate synthase
Probab=25.18 E-value=1.4e+02 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=31.2
Q ss_pred ccccCCCcc---cc--cccHHHHHHHHHHHHHHhccccchhccCCccCCCCCh
Q psy15360 48 TLQGNLDPC---AL--YASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDP 95 (109)
Q Consensus 48 ~l~GNidp~---~L--~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~tp~ 95 (109)
.+.|.-+-. +| .++++++++.+++.++. +.-|.+-||.+-....|
T Consensus 292 PlHGGA~e~v~~~l~ei~~~~~v~~~v~~~l~~---~~~l~GFGHrvyk~~DP 341 (455)
T PLN02456 292 PLHGGANEAVLKMLKEIGTVENIPEYVEGVKNS---KKVLPGFGHRVYKNYDP 341 (455)
T ss_pred CcccChHHHHHHHHHHhCCHHHHHHHHHHHHhC---CCcccCCCCCCCCCCCC
Confidence 556655542 23 37888888888888765 66788999999765444
No 497
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.15 E-value=1.5e+02 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHhccccchhccCC
Q psy15360 61 SKEKLRKIGTQMAKEFGKSRYIANLGH 87 (109)
Q Consensus 61 t~e~i~~~~~~~l~~~~~~g~Il~~gc 87 (109)
+++.|+..++++++.++..++|+++.=
T Consensus 211 ~~~~v~p~~e~~i~~fg~dR~vfGSdw 237 (279)
T COG3618 211 TVEDVRPYVEELIELFGWDRFVFGSDW 237 (279)
T ss_pred CHHHHHHHHHHHHHhcCccceEecCCC
Confidence 689999999999999887888888763
No 498
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=25.11 E-value=2.3e+02 Score=19.43 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=40.1
Q ss_pred hhHHHHhccCCceEeeecccChhhHhhhhcCC-ccccCCCcccc-cccHHHHHHHHHHHHHHhcc-ccchhccCC
Q psy15360 16 YALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCAL-YASKEKLRKIGTQMAKEFGK-SRYIANLGH 87 (109)
Q Consensus 16 ~~l~~l~~~g~d~~~id~~~d~~~~~~~~g~~-~l~GNidp~~L-~gt~e~i~~~~~~~l~~~~~-~g~Il~~gc 87 (109)
.+...+.+.|..++.+.-. +...+.+..... ...+++..... +.+++++.+.++++.+.+++ ...|.+.|-
T Consensus 15 ~la~~l~~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (242)
T TIGR01829 15 AICQRLAKDGYRVAANCGP-NEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGI 88 (242)
T ss_pred HHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 4778888899988766431 222222222111 22223333222 35778888888888877665 556666653
No 499
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=25.08 E-value=1.6e+02 Score=18.87 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=26.8
Q ss_pred ccccC-CCcccccccHHHHHHHHHHHHHHhccccchhccCCccCCC---CChHHHHHHH
Q psy15360 48 TLQGN-LDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPD---MDPEHVQVLI 102 (109)
Q Consensus 48 ~l~GN-idp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcgi~~~---tp~eNi~a~v 102 (109)
.+.|. +|..-+.-+-.++++.++++++.+. +.++ +......+. +..|||-.++
T Consensus 34 ~v~g~~~~~~g~v~DF~~lk~~~~~i~~~lD-h~~L-n~~~~~~~~~~~pT~E~lA~~i 90 (123)
T PF01242_consen 34 EVEGEELDEDGMVVDFGDLKKIIKEIDDQLD-HKFL-NEDDPEFDDINNPTAENLARWI 90 (123)
T ss_dssp EEEEESSTTTSSSS-HHHHHHHHHHHHHHHT-TEEG-GHHSGCGCSSTS--HHHHHHHH
T ss_pred EEEEeeCCCCCEEEEHHHHHHHHHHHHHHhC-cccc-cCCChhhhccCCCCHHHHHHHH
Confidence 35666 4444333455667777777555543 5666 633333332 6788885443
No 500
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.06 E-value=2.8e+02 Score=20.30 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=48.5
Q ss_pred hhhHHHHhccCCceEeeeccc-C---hhhHhhhhcCC--ccccCCCcccccccHHHHHHHHHHHHHHhccccchhccCCc
Q psy15360 15 HYALEELNQTKYDIVGIDWTI-E---PSLARSIIKNK--TLQGNLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHG 88 (109)
Q Consensus 15 ~~~l~~l~~~g~d~~~id~~~-d---~~~~~~~~g~~--~l~GNidp~~L~gt~e~i~~~~~~~l~~~~~~g~Il~~gcg 88 (109)
..-++...++|++.+.+-..+ + +.++.+...+. .++.|+--. -.-+++.+.+.++++.+. |...++..-.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~---G~d~i~l~DT 163 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS-HMASPEELAEQAKLMESY---GADCVYVTDS 163 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHHc---CCCEEEEcCC
Confidence 345666778899988764222 2 23333333222 455554211 124788888888877665 3444555433
Q ss_pred cCCCCChHHHHHHHHHhhh
Q psy15360 89 IYPDMDPEHVQVLIDAIHD 107 (109)
Q Consensus 89 i~~~tp~eNi~a~v~a~~~ 107 (109)
+. -..|+-+..+++.+++
T Consensus 164 ~G-~~~P~~v~~lv~~l~~ 181 (263)
T cd07943 164 AG-AMLPDDVRERVRALRE 181 (263)
T ss_pred CC-CcCHHHHHHHHHHHHH
Confidence 33 3455567777777765
Done!