RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15360
(109 letters)
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 161 bits (409), Expect = 4e-50
Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASK 62
VPM IFAK H+ALEEL Q Y++VG+DWT+ P AR + K TLQGNLDPCALYAS+
Sbjct: 255 PVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASE 314
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
E++ ++ QM +FG RYIANLGHG+YPDMDPEHV +DA+H
Sbjct: 315 EEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 359
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 158 bits (403), Expect = 3e-49
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASK 62
++P+ ++A G+ LE L T D+V +DWT++ + R + N +QGN+DP L+ SK
Sbjct: 246 NLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSK 305
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
E + K+ GK ++I NLGHGI E+ +
Sbjct: 306 EFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKG 350
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 156 bits (396), Expect = 3e-48
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKE 63
+VP+ +F GA + + + D+VG+DW + ARS KT+QGNLDP L A E
Sbjct: 244 NVPLIMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARSKGITKTVQGNLDPSILLAPWE 303
Query: 64 KLRKIGTQMAKEF-GKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ + ++ + +I NLGHG++PD+ PE ++ L +H+
Sbjct: 304 VIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLKKLTAFVHE 348
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 154 bits (393), Expect = 7e-48
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASK 62
VP+T+F KG LE + +T D +G+DWT + + AR + NK LQGN+DP LYA
Sbjct: 242 RVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPP 301
Query: 63 EKLRKIGTQMAKEFGK-SRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
++ + + FG ++ NLGHGI+ D+ PEH V ++A+H
Sbjct: 302 ARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHR 347
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 153 bits (390), Expect = 2e-47
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKE 63
D P+ F +G+ ++ + D + +DW+++ I +K QGNL+P LYAS+E
Sbjct: 231 DTPVIYFFRGSSSFIDLAVDYRADALSVDWSVDIPELFKIY-DKGFQGNLEPAVLYASEE 289
Query: 64 KLRKIGTQMAKEFG-KSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
+ + + + K+RY+ NLGHG+ PDM+ E V+ L+D +
Sbjct: 290 VIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 153 bits (390), Expect = 3e-47
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 4 DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNK-TLQGNLDPCALYASK 62
VP F KG LE+L T D VG+DWT+ AR + + LQGNLDP L+A
Sbjct: 252 RVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPP 311
Query: 63 EKLRKIGTQMAKEFGKSR-YIANLGHGIYPDMDPEHVQVLIDAIHD 107
E +R + +G ++ NLGHGI PEHV L+D +H
Sbjct: 312 EAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHR 357
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.038
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 39/118 (33%)
Query: 19 EELNQTKYD---IVGIDWTIEPSLARSIIKNKTLQGNLDP------------CALYASKE 63
L+ T++ + +E + +K+K G + AL + +
Sbjct: 1724 GLLSATQFTQPALT----LMEKAAFE-DLKSK---GLIPADATFAGHSLGEYAALASLAD 1775
Query: 64 -----------KLRKIGTQMA---KEFGKSRY--IANLGHGIYPDMDPEHVQVLIDAI 105
R + Q+A E G+S Y IA + E +Q +++ +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Score = 27.3 bits (60), Expect = 0.98
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 42/122 (34%)
Query: 6 PMTIFA-KGAHYA-----LEELNQTKYDIVGIDWTIEPSL---ARSIIKNKTLQGNLDPC 56
PM + + + N + +E SL A++++ + G P
Sbjct: 337 PM--LSISNLTQEQVQDYVNKTNSH----LPAGKQVEISLVNGAKNLV----VSGP--PQ 384
Query: 57 ALYASKEKLRKI------------GTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDA 104
+LY LRK ++ +F +R+ L P P H +L+ A
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-NRF---L-----PVASPFHSHLLVPA 435
Query: 105 IH 106
Sbjct: 436 SD 437
Score = 26.6 bits (58), Expect = 2.1
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 41/111 (36%)
Query: 9 IFAKG--AHYALE--ELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALYASKEK 64
+F +G A+ EL ++ Y ++ I+ P + S+E
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAIN----PGRVAASF----------------SQEA 1825
Query: 65 LRKIGTQMAKEFGKSRYIANLGHGIY--PDMDPEHVQVLI----DAIHDAL 109
L+ + ++ K G I N Y + Q + A+ D +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVN-----YNVENQ-----QYVAAGDLRAL-DTV 1865
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 31.1 bits (71), Expect = 0.045
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 88 GIYPDMDPEHVQVLIDAIHDAL 109
+P E V L+ + + +
Sbjct: 340 ANFPAHSLEQVHKLVQTLKEKI 361
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 29.0 bits (64), Expect = 0.29
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 52 NLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLID 103
L P ++ + G ++ GK R + +P +DP+ + L +
Sbjct: 198 KLSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHE 249
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 26.8 bits (59), Expect = 1.7
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 93 MDPEHVQVLIDAIHDAL 109
++ EHV + D L
Sbjct: 283 IEGEHVASTAHIVGDWL 299
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 26.4 bits (58), Expect = 2.0
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 93 MDPEHVQVLIDAIHDAL 109
++ ++ +I IH +L
Sbjct: 290 LEGSGLESIISIIHSSL 306
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 19/44 (43%)
Query: 62 KEKLRKIGTQMAKEFGKSRYIANLGHGIY-PDMDPEHVQVLIDA 104
K+ L+K+ + K +Y D P + I A
Sbjct: 19 KQALKKLQASL-K--------------LYADDSAP---ALAIKA 44
Score = 25.3 bits (54), Expect = 4.4
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 41 RSIIKNKTLQGNLDPCALYA 60
+++ K LQ +L LYA
Sbjct: 20 QAL---KKLQASLK---LYA 33
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 25.9 bits (57), Expect = 2.7
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
EKL+ + A E+ + I D HV+ L + AL
Sbjct: 130 EKLKALHVDSA-EYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCAL 175
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 25.9 bits (57), Expect = 3.1
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
K+R + E G R I +P V+ L + ++ +L
Sbjct: 175 SKMRDMQMDKT-ELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASL 220
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer,
structural genomics; HET: PLP; 1.50A {Mycobacterium
tuberculosis} PDB: 3vom_A*
Length = 398
Score = 25.7 bits (57), Expect = 3.8
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 88 GIYPDMDPEHVQVLIDAIHDA 108
++P ++P+ V L + +
Sbjct: 374 AMFPAVEPDDVSALTECVDWV 394
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 25.2 bits (56), Expect = 4.8
Identities = 1/21 (4%), Positives = 7/21 (33%)
Query: 89 IYPDMDPEHVQVLIDAIHDAL 109
+ + ++ + D +
Sbjct: 363 TGTAIGDDDIRRVADLLRLCA 383
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 25.1 bits (55), Expect = 4.9
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
KL+ + M ++ +++ L + ++ + V D + AL
Sbjct: 139 NKLQDLKFDMG-DYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAAL 184
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 25.1 bits (55), Expect = 5.6
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 63 EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHDAL 109
K+R + E G R I +P V+ L + ++ +L
Sbjct: 133 SKMRDMQMDKT-ELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASL 178
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 25.3 bits (56), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 79 SRYIANLGHGIYPDMDP 95
SR IA LG IYP +DP
Sbjct: 340 SRAIAELG--IYPAVDP 354
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 25.2 bits (56), Expect = 5.7
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 91 PDMDPEHVQVLIDAIHDAL 109
DM+ L I+
Sbjct: 59 QDMNDNVWLTLAKKINTDC 77
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase,
thioesterase, norsolorinic acid, P polyketide,
acyltransferase; 1.70A {Aspergillus parasiticus}
Length = 265
Score = 24.8 bits (54), Expect = 6.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 93 MDPEHVQVLIDAIHDAL 109
M EHV ++ D I +
Sbjct: 248 MQKEHVSIISDLIDRVM 264
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 24.8 bits (55), Expect = 6.5
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 89 IYPDMDPEHVQVLIDAIHDAL 109
++ M E V+ ++ + +
Sbjct: 352 LWEGMTKEIVEQIVICLGQKV 372
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 24.9 bits (55), Expect = 6.9
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 91 PDMDPEHVQVLIDAIHDAL 109
+M E L I
Sbjct: 67 SNMCDEIWLRLAKKIAKLF 85
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 24.8 bits (55), Expect = 7.2
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 91 PDMDPEHVQVLIDAIHDAL 109
+M + L +++ L
Sbjct: 61 QEMTGKVWLKLAKRVNELL 79
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 24.9 bits (54), Expect = 7.2
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 93 MDPEHVQVLIDAIHDA 108
++ ++ +I IH +
Sbjct: 268 LEGSGLESIISIIHSS 283
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 24.9 bits (54), Expect = 7.7
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 3 NDVPMTI---FAKGAHYALEELNQTKYDIVGIDWTIEPSLARSIIKNKTLQGNLDPCALY 59
DVP + K A E L + Y+ I W P +I+ + L P +
Sbjct: 269 KDVPGIVSKNITKALVEAFEPLGISDYNS--IFWIAHPG-GPAILDQVEQKLALKPEKMN 325
Query: 60 ASKEKLRKIG 69
A++E L + G
Sbjct: 326 ATREVLSEYG 335
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 24.8 bits (55), Expect = 7.9
Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 14 AHYALEELNQTKYDI--VGID----WTIEPSLARSIIKNKTLQGNLDP 55
A L ++ +GI W + + L P
Sbjct: 24 AREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSP 71
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 24.5 bits (54), Expect = 8.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 88 GIYPDMDPEHVQVLIDAIHDAL 109
GIYP + +H+ ++ +
Sbjct: 412 GIYPGLTHDHLDYVVSKFEEFF 433
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 24.4 bits (54), Expect = 8.4
Identities = 6/16 (37%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 71 QMAKEFGKSR-YIANL 85
++A+ GK+R +AN
Sbjct: 139 EVARRVGKARSTVANA 154
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A
{Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A
1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Length = 271
Score = 24.5 bits (54), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGID 32
ND M + GA AL+ ++ +VG D
Sbjct: 189 QND-EMAL---GALRALQTAGKSDVMVVGFD 215
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Length = 332
Score = 24.5 bits (54), Expect = 9.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 91 PDMDPEHVQVLIDAIHDAL 109
DM+ E L + L
Sbjct: 63 QDMNEEIWFKLAQRAQELL 81
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 24.6 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 79 SRYIANLGHGIYPDMDP 95
SR +A G IYP +DP
Sbjct: 353 SRGLAAKG--IYPAVDP 367
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding
subunit; sugar binding/transporter, structural genomics,
PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Length = 291
Score = 24.3 bits (53), Expect = 9.7
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 2 NNDVPMTIFAKGAHYALEELNQTKYDIVGID 32
D GA AL+ +T G+D
Sbjct: 198 CWD-VP---MIGATQALQAAGRTDIRTYGVD 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,757,269
Number of extensions: 94488
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 55
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)