RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15360
         (109 letters)



>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score = 92.3 bits (228), Expect = 3e-24
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 4   DVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALYASK 62
            VPM IFAK  H+ALEEL Q  Y++VG+DWT+ P  AR  + K  TLQGNLDPCALYAS+
Sbjct: 245 PVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASE 304

Query: 63  EKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
           E++ ++  QM  +FG  RYIANLGHG+YPDMDPEHV   +DA+H 
Sbjct: 305 EEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 349


>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
           (Nicotiana tabacum), UROD-III [TaxId: 4097]}
          Length = 343

 Score = 88.1 bits (217), Expect = 8e-23
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 1   MNNDVPMTIFAKGAHYALEELNQTKYDIVGIDWTIEPSLARSII-KNKTLQGNLDPCALY 59
            + ++P+ ++A G+   LE L  T  D+V +DWT++ +  R  +  N  +QGN+DP  L+
Sbjct: 233 THPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLF 292

Query: 60  ASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLIDAIHD 107
            SKE +        K+ GK ++I NLGHGI      E+     +    
Sbjct: 293 GSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKG 340


>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
           {Escherichia coli [TaxId: 562]}
          Length = 360

 Score = 27.8 bits (60), Expect = 0.28
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 88  GIYPDMDPEHVQVLIDAIHD 107
            IY  M  E V+ L D + +
Sbjct: 335 SIYNAMPLEGVKALTDFMVE 354


>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
           {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
          Length = 361

 Score = 27.7 bits (60), Expect = 0.32
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 88  GIYPDMDPEHVQVLIDAIHD 107
            IY  +  E  + L+  +  
Sbjct: 336 SIYNAVPYESCEALVQFMEH 355


>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
           {Bacillus alcalophilus [TaxId: 1445]}
          Length = 360

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 3/20 (15%), Positives = 7/20 (35%)

Query: 88  GIYPDMDPEHVQVLIDAIHD 107
            IY  +  +    L + +  
Sbjct: 336 SIYNAVPIDACIALRELMIQ 355


>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 25.3 bits (54), Expect = 1.7
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 52  NLDPCALYASKEKLRKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLID 103
            L P    ++    +  G    ++ GK R +       +P +DP+ +  L +
Sbjct: 187 KLSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHE 238


>d1qfxa_ c.60.1.2 (A:) Phytase
           (myo-inositol-hexakisphosphate-3-phosphohydrolase)
           {Aspergillus niger [TaxId: 5061]}
          Length = 447

 Score = 24.7 bits (53), Expect = 2.7
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 4/30 (13%)

Query: 77  GKSRYIANLGHGIYPDM----DPEHVQVLI 102
           G   Y   + +GI  D     + + V ++ 
Sbjct: 19  GNGPYSERVSYGIARDPPTSCEVDQVIMVK 48


>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator
           YfiR {Bacillus subtilis [TaxId: 1423]}
          Length = 123

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 2/23 (8%), Positives = 6/23 (26%)

Query: 87  HGIYPDMDPEHVQVLIDAIHDAL 109
               P      +      ++D +
Sbjct: 67  GEFQPVQPLATIAKFFLNMNDGI 89


>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 133

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 12/40 (30%)

Query: 30 GIDWTIEPSLARSIIKNK------------TLQGNLDPCA 57
           +   ++P L   +   +             L G+ D CA
Sbjct: 59 AVKAQLDPPLLALVKSGRLTVGQKIITQGAELVGSPDACA 98


>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 286

 Score = 24.4 bits (51), Expect = 3.7
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 93  MDPEHVQVLIDAIHDAL 109
           ++   ++ +I  IH +L
Sbjct: 269 LEGSGLESIISIIHSSL 285


>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 23.7 bits (50), Expect = 7.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 66  RKIGTQMAKEFGKSRYIANLGHGIYPDMDPEHVQVLID 103
           +K       E GK++ +       YP+MD +    L D
Sbjct: 235 KKGFWCQLLEGGKTKCLGKSKGRKYPEMDLDSRAFLKD 272


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,203
Number of extensions: 17498
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 16
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)