BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15361
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 52/68 (76%)
Query: 42 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 101
MVKETT+YD+LGVKPN TQ+E HPDKNPNEGEKFKQIS AYEVLS+ +K
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK 61
Query: 102 RELYDQGA 109
RELYD+G
Sbjct: 62 RELYDKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%)
Query: 42 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 101
MVKET +YD+LGVKP+ + +E HPDKNP+ E+FKQIS AYEVLS+ +K
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63
Query: 102 RELYDQGA 109
R++YDQG
Sbjct: 64 RQIYDQGG 71
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 42 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 101
MVKET YD+LGV P+ + E HPDK + EKFK+IS A+E+L++P+K
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63
Query: 102 RELYDQ 107
RE+YDQ
Sbjct: 64 REIYDQ 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 105
+Y+ILGV + ++ HPDKN P E FK I AY VLSNPEKR+ Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 106 DQ 107
DQ
Sbjct: 69 DQ 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 46 TTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEK 101
+Y++LGV+ + + ++ HPDKNP+ E KFK +S AYEVLS+ +K
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 102 RELYDQGASC 111
R LYD+ A C
Sbjct: 69 RSLYDR-AGC 77
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 46 TTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEK 101
++Y+IL V + + D+ HPDKNP+ E KFK+++ AYEVLS+ K
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 102 RELYDQ-GASCLMAPLGLVSFTEAG 125
RE+YD+ G L S EAG
Sbjct: 62 REIYDRYGREGLTGTGTGPSRAEAG 86
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 105
+Y LG+ + +E HPDKN P EKFK+I+ AY+VLS+P KRE++
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 106 DQ 107
D+
Sbjct: 65 DR 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 105 YDQGASCLMAPLGLVSFTEAG 125
YDQ G +F + G
Sbjct: 65 YDQ--------YGHAAFEQGG 77
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 47 TFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNE---GEKFKQISMAYEVLSNPEKRE 103
+ Y +LG+ N T D+ HPDKNP+ +KFK+I+ A+ +L++ KR
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 104 LYDQGASC 111
+YD+ S
Sbjct: 78 IYDKYGSL 85
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 49 YDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEG--EKFKQISMAYEVLSNPEKRELYD 106
Y +LGV +Q + HPDKN + G ++F QIS AYE+LSN EKR YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 107 QGAS 110
S
Sbjct: 80 HYGS 83
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 105 YDQ 107
YDQ
Sbjct: 65 YDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 105 YDQ 107
YDQ
Sbjct: 65 YDQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN---PNEGEKFKQISMAYEVLSNPEKREL 104
+Y ILGV N +Q E HPD N P EKF Q++ AYEVLS+ KR+
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 105 YD 106
YD
Sbjct: 69 YD 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEKRE 103
+Y++L V + + HPDKNP E +FKQ++ AYEVLS+ +KR+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 104 LYDQGAS 110
+YD+ S
Sbjct: 71 IYDRYGS 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 105
+YDILGV + ++ + HPDKN P+ KF++I+ AYE LS+ +R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 106 DQ-GASCLMAPLG 117
D G S + G
Sbjct: 69 DTLGHSAFTSGKG 81
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 45 ETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNE---GEKFKQISMAYEVLSNPEK 101
T YD+LGV TQ + HPD+N E+F +IS AY VL +
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75
Query: 102 RELYDQG 108
R YD+G
Sbjct: 76 RRKYDRG 82
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 105
+Y I+GVKP HPD K P+ +FK+++ A+EVLS+ ++R Y
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 106 DQ 107
DQ
Sbjct: 67 DQ 68
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 43.1 bits (100), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 45 ETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEK 101
+ FY +LGV + E HPDKNPN F +I+ AYEVL + +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 102 RELYDQ 107
R+ YD+
Sbjct: 80 RKKYDK 85
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 47 TFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPN----EGEKFKQISMAYEVLSNPEKR 102
FY +LGV + E HPDKNPN G+ F +I+ AYEVL + + R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD-FLKINRAYEVLKDEDLR 61
Query: 103 ELYDQ 107
+ YD+
Sbjct: 62 KKYDK 66
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPN------EGEKFKQISMAYEVLSNPEK 101
+Y ILGVK N + E HPD N +KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEX 443
Query: 102 RELYDQG 108
R+ +D G
Sbjct: 444 RKKFDDG 450
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPN------EGEKFKQISMAYEVLSNPEK 101
+Y ILGVK N + E HPD N +KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 102 RELYDQG 108
R+ +D G
Sbjct: 444 RKKFDDG 450
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 41 NMVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPD-KNPNEGE-KFKQISMAYEVLSN 98
N ++ +Y ILGV+P HPD N+ E KFK ++ A+EVL +
Sbjct: 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD 82
Query: 99 PEKRELYDQ 107
++R YDQ
Sbjct: 83 EQRRAEYDQ 91
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDK---NPNEGEKFKQISMAYEVLSNPEKREL 104
+Y +LG + ++ HPDK NP E F+++ A E+L+N E R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 105 YDQGASCLMA 114
YD M+
Sbjct: 82 YDHWRRSQMS 91
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNE---------GEKFKQISMAYEVLSN 98
+Y ILG P+ + HPDK + +KF +I A+++L N
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 99 PEKRELYD 106
E ++ YD
Sbjct: 78 EETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 49 YDILGVKPNCTQDEXXXXXXXXXXXXHPDK--NPNEGEKFKQISMAYEVL 96
+D+LGVKP ++DE HPDK P + FK + A L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 48 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEG---------EKFKQISMAYEVLSN 98
+Y ILG P+ + HPDK + +KF +I A+++L N
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 99 PEKRELYD 106
E + YD
Sbjct: 72 EETKREYD 79
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 75 HPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGLVSFTEAGYVSRK-PKV 133
H P+ G + Y + K L DQ CL++ VS+T AG +S + P
Sbjct: 294 HQSDQPHSGGVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNF 353
Query: 134 TIPEN 138
IP N
Sbjct: 354 IIPSN 358
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 75 HPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGLVSFTEAGYVSRK-PKV 133
H P+ G + Y + K L DQ CL++ VS+T AG +S + P
Sbjct: 299 HQSDQPHSGGVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNF 358
Query: 134 TIPEN 138
IP N
Sbjct: 359 IIPSN 363
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 75 HPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGLVSFTEAGYVSRK-PKV 133
H P+ G + Y + K L DQ CL++ VS+T AG +S + P
Sbjct: 299 HQSDQPHSGGVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNF 358
Query: 134 TIPEN 138
IP N
Sbjct: 359 IIPSN 363
>pdb|1ZTV|A Chain A, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
pdb|1ZTV|B Chain B, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
Length = 289
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 113 MAPLGLVSFTEAGYVSRKPKVTIPENGEEVVLETMD------PEKER 153
M LGL SF+E Y++ K + T+ E + L MD P KER
Sbjct: 13 MIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKER 59
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 78 KNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGLVS 120
K P + E FK+I A+E L+ + + Y G S +A + LV+
Sbjct: 120 KAPADPEAFKKIEAAFEFLNTFLEGQDYAAGDSLTVADIALVA 162
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 75 HPDKNPNEGEK------FKQISMAYEVLSNPEKRELYD 106
HPD+ N+ EK F+ I+ AYE L + E + YD
Sbjct: 45 HPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYD 82
>pdb|3F8L|A Chain A, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|B Chain B, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|C Chain C, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|D Chain D, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
Length = 201
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 104 LYDQGASCLMAPLGLVSFTEA 124
LY QG+ + PLG+ S+TEA
Sbjct: 25 LYFQGSGAIRQPLGMGSYTEA 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,300,773
Number of Sequences: 62578
Number of extensions: 197348
Number of successful extensions: 297
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 38
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)