Query psy15361
Match_columns 178
No_of_seqs 222 out of 1783
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:56:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 3.4E-25 7.4E-30 191.5 9.0 73 43-115 1-76 (371)
2 KOG0713|consensus 99.9 3.7E-23 8E-28 175.5 7.6 74 43-116 13-89 (336)
3 KOG0712|consensus 99.9 5.5E-22 1.2E-26 169.6 7.7 75 44-118 2-76 (337)
4 PRK14296 chaperone protein Dna 99.8 9.7E-21 2.1E-25 165.3 8.1 71 44-114 2-74 (372)
5 PRK14288 chaperone protein Dna 99.8 1.1E-20 2.5E-25 164.7 8.2 70 45-114 2-74 (369)
6 PTZ00037 DnaJ_C chaperone prot 99.8 1.9E-20 4.2E-25 165.6 8.1 76 38-114 20-95 (421)
7 PRK14286 chaperone protein Dna 99.8 7.9E-20 1.7E-24 159.6 7.6 71 44-114 2-75 (372)
8 PRK14283 chaperone protein Dna 99.8 8.9E-20 1.9E-24 159.5 7.8 73 42-114 1-75 (378)
9 PRK14282 chaperone protein Dna 99.8 1.5E-19 3.3E-24 157.6 9.0 69 45-113 3-75 (369)
10 PRK14287 chaperone protein Dna 99.8 1.3E-19 2.8E-24 158.2 7.9 70 45-114 3-74 (371)
11 PRK14279 chaperone protein Dna 99.8 9.9E-20 2.1E-24 160.0 6.8 67 45-111 8-77 (392)
12 PRK14277 chaperone protein Dna 99.8 2E-19 4.4E-24 157.7 8.7 73 42-114 1-76 (386)
13 PRK14298 chaperone protein Dna 99.8 2E-19 4.4E-24 157.3 7.7 71 44-114 3-75 (377)
14 PRK14276 chaperone protein Dna 99.8 2.4E-19 5.3E-24 156.9 8.1 70 45-114 3-74 (380)
15 PRK14294 chaperone protein Dna 99.8 3.6E-19 7.8E-24 155.1 8.8 71 44-114 2-75 (366)
16 PRK14291 chaperone protein Dna 99.8 3.9E-19 8.5E-24 155.7 8.7 70 45-114 2-73 (382)
17 PRK14299 chaperone protein Dna 99.8 4E-19 8.7E-24 150.6 8.0 69 45-113 3-73 (291)
18 PRK14285 chaperone protein Dna 99.8 5.6E-19 1.2E-23 153.9 8.6 70 45-114 2-74 (365)
19 PRK14280 chaperone protein Dna 99.8 5E-19 1.1E-23 154.7 8.1 70 45-114 3-74 (376)
20 PRK14301 chaperone protein Dna 99.8 5.7E-19 1.2E-23 154.2 8.0 70 45-114 3-75 (373)
21 PF00226 DnaJ: DnaJ domain; I 99.8 5.1E-19 1.1E-23 117.4 5.8 60 47-106 1-64 (64)
22 PRK14297 chaperone protein Dna 99.8 5.2E-19 1.1E-23 154.8 7.5 70 45-114 3-75 (380)
23 KOG0716|consensus 99.8 6.8E-19 1.5E-23 145.6 6.5 72 43-114 28-102 (279)
24 PRK14295 chaperone protein Dna 99.8 9.6E-19 2.1E-23 153.6 7.6 71 44-114 7-84 (389)
25 PRK10767 chaperone protein Dna 99.8 1.5E-18 3.3E-23 151.4 8.3 70 45-114 3-75 (371)
26 PRK14278 chaperone protein Dna 99.8 1E-18 2.2E-23 153.0 7.1 66 46-111 3-70 (378)
27 PRK14289 chaperone protein Dna 99.8 2.9E-18 6.3E-23 150.4 8.9 73 42-114 1-76 (386)
28 PRK14284 chaperone protein Dna 99.7 2E-18 4.2E-23 151.7 7.8 68 46-113 1-71 (391)
29 KOG0718|consensus 99.7 2.9E-18 6.2E-23 150.6 8.5 76 43-118 6-87 (546)
30 PRK14281 chaperone protein Dna 99.7 2.4E-18 5.2E-23 151.5 7.4 69 46-114 3-74 (397)
31 PRK14290 chaperone protein Dna 99.7 5.1E-18 1.1E-22 147.9 7.8 69 46-114 3-75 (365)
32 TIGR02349 DnaJ_bact chaperone 99.7 5.4E-18 1.2E-22 147.1 7.8 68 47-114 1-70 (354)
33 PRK14300 chaperone protein Dna 99.7 9.2E-18 2E-22 146.6 7.3 69 46-114 3-73 (372)
34 PTZ00341 Ring-infected erythro 99.7 1.4E-17 3E-22 156.8 8.8 78 40-117 567-646 (1136)
35 KOG0691|consensus 99.7 1E-17 2.3E-22 141.7 7.2 75 42-116 1-78 (296)
36 PRK14292 chaperone protein Dna 99.7 1.3E-17 2.8E-22 145.6 7.3 67 46-112 2-70 (371)
37 KOG0715|consensus 99.7 1.7E-17 3.7E-22 140.5 7.2 68 45-112 42-111 (288)
38 PRK14293 chaperone protein Dna 99.7 1.9E-17 4.1E-22 144.7 7.7 69 46-114 3-73 (374)
39 PRK10266 curved DNA-binding pr 99.7 1.9E-17 4.2E-22 141.1 7.4 66 45-110 3-70 (306)
40 KOG0717|consensus 99.7 2E-17 4.3E-22 145.1 6.1 71 43-113 5-79 (508)
41 smart00271 DnaJ DnaJ molecular 99.7 9.7E-17 2.1E-21 104.8 6.4 55 46-100 1-59 (60)
42 cd06257 DnaJ DnaJ domain or J- 99.7 1.7E-16 3.6E-21 101.8 6.6 52 47-98 1-55 (55)
43 PHA03102 Small T antigen; Revi 99.6 3.5E-16 7.6E-21 121.1 6.6 69 46-115 5-75 (153)
44 TIGR03835 termin_org_DnaJ term 99.6 3.7E-16 7.9E-21 144.5 7.4 70 46-115 2-73 (871)
45 KOG0719|consensus 99.6 3.9E-16 8.4E-21 127.0 6.3 72 41-112 9-85 (264)
46 COG2214 CbpA DnaJ-class molecu 99.6 1.4E-15 3E-20 120.1 7.2 68 42-109 2-73 (237)
47 KOG0721|consensus 99.6 2E-15 4.4E-20 121.6 6.9 72 43-114 96-170 (230)
48 PRK01356 hscB co-chaperone Hsc 99.5 2.8E-14 6.1E-19 112.1 7.6 65 46-110 2-74 (166)
49 PRK05014 hscB co-chaperone Hsc 99.5 3E-14 6.4E-19 112.4 7.4 64 46-109 1-74 (171)
50 PRK00294 hscB co-chaperone Hsc 99.5 6.4E-14 1.4E-18 110.7 7.8 68 43-110 1-78 (173)
51 PRK03578 hscB co-chaperone Hsc 99.5 1.6E-13 3.4E-18 108.8 7.7 64 46-109 6-79 (176)
52 KOG0624|consensus 99.4 2.5E-13 5.4E-18 116.8 8.0 67 44-110 392-464 (504)
53 PTZ00100 DnaJ chaperone protei 99.4 2E-13 4.3E-18 101.0 5.6 55 42-97 61-115 (116)
54 KOG0720|consensus 99.4 1.5E-13 3.3E-18 120.8 5.3 67 44-110 233-301 (490)
55 KOG0550|consensus 99.3 6.9E-13 1.5E-17 115.9 4.6 72 39-110 366-441 (486)
56 KOG0714|consensus 99.3 1.8E-12 3.8E-17 107.0 5.8 71 45-115 2-76 (306)
57 PHA02624 large T antigen; Prov 99.3 1.9E-12 4E-17 118.5 6.1 61 45-106 10-72 (647)
58 KOG0722|consensus 99.3 9.4E-13 2E-17 108.7 3.7 68 43-110 30-99 (329)
59 PRK09430 djlA Dna-J like membr 99.3 4.5E-12 9.8E-17 106.4 5.7 56 43-98 197-262 (267)
60 PRK01773 hscB co-chaperone Hsc 99.2 3.3E-11 7.1E-16 95.3 7.3 65 46-110 2-76 (173)
61 COG5407 SEC63 Preprotein trans 99.1 1.9E-10 4.2E-15 101.5 5.6 69 46-114 98-174 (610)
62 COG5269 ZUO1 Ribosome-associat 99.0 2.8E-10 6E-15 95.0 3.9 80 31-110 28-115 (379)
63 TIGR00714 hscB Fe-S protein as 99.0 1.2E-09 2.5E-14 85.2 6.5 53 58-110 3-63 (157)
64 KOG1150|consensus 99.0 1.1E-09 2.3E-14 87.8 6.2 74 31-105 39-116 (250)
65 KOG1789|consensus 98.7 2E-08 4.3E-13 96.2 6.7 79 19-97 1247-1336(2235)
66 KOG0723|consensus 98.4 3.8E-07 8.3E-12 66.2 5.0 56 43-99 53-108 (112)
67 KOG0568|consensus 98.3 8.4E-07 1.8E-11 73.0 4.9 57 42-98 43-102 (342)
68 KOG3192|consensus 97.8 3.2E-05 6.9E-10 59.9 4.7 67 41-107 3-79 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.6 0.0016 3.4E-08 51.4 2.5 51 46-96 113-173 (174)
70 PF03656 Pam16: Pam16; InterP 96.4 0.0076 1.7E-07 45.4 5.2 58 42-100 54-111 (127)
71 COG1076 DjlA DnaJ-domain-conta 96.4 0.0023 5.1E-08 50.4 2.3 66 47-112 2-77 (174)
72 KOG0431|consensus 96.3 0.0053 1.1E-07 55.4 4.6 42 54-95 396-447 (453)
73 PF13446 RPT: A repeated domai 90.8 0.37 8E-06 31.3 3.5 46 45-98 4-49 (62)
74 PF11833 DUF3353: Protein of u 89.3 0.86 1.9E-05 36.7 5.1 38 55-97 1-38 (194)
75 PTZ00037 DnaJ_C chaperone prot 84.1 0.66 1.4E-05 41.6 2.0 41 138-178 378-421 (421)
76 KOG0724|consensus 83.0 1.2 2.7E-05 38.2 3.2 52 58-109 4-62 (335)
77 PF14687 DUF4460: Domain of un 72.8 8.3 0.00018 28.3 4.6 44 56-99 4-54 (112)
78 KOG3442|consensus 68.5 7.3 0.00016 29.3 3.4 54 43-97 56-109 (132)
79 PF07709 SRR: Seven Residue Re 48.7 12 0.00026 17.1 1.1 13 85-97 2-14 (14)
80 PF10041 DUF2277: Uncharacteri 44.7 1E+02 0.0022 21.2 5.7 36 47-82 4-39 (78)
81 COG5552 Uncharacterized conser 43.3 94 0.002 21.4 5.2 37 46-82 3-39 (88)
82 PRK15435 bifunctional DNA-bind 42.0 24 0.00053 30.8 2.9 10 9-18 30-39 (353)
83 cd01388 SOX-TCF_HMG-box SOX-TC 37.8 92 0.002 20.2 4.6 41 65-107 14-54 (72)
84 PF02216 B: B domain; InterPr 36.3 54 0.0012 21.0 3.0 30 47-79 12-41 (54)
85 PF07739 TipAS: TipAS antibiot 34.2 1.3E+02 0.0029 21.0 5.3 48 53-106 51-99 (118)
86 PF08447 PAS_3: PAS fold; Int 30.8 15 0.00033 24.1 -0.1 31 45-79 5-36 (91)
87 KOG1912|consensus 28.0 30 0.00065 33.9 1.2 102 5-108 714-823 (1062)
88 PF12434 Malate_DH: Malate deh 25.8 85 0.0018 17.3 2.2 17 60-76 10-26 (28)
89 PF11126 Phage_DsbA: Transcrip 25.0 68 0.0015 21.6 2.2 32 65-96 35-66 (69)
90 cd01390 HMGB-UBF_HMG-box HMGB- 25.0 1.8E+02 0.0038 17.9 4.7 39 67-107 15-53 (66)
91 cd00084 HMG-box High Mobility 24.8 1.7E+02 0.0038 17.8 4.7 42 64-107 12-53 (66)
92 COG2879 Uncharacterized small 24.2 1.2E+02 0.0027 20.1 3.2 23 65-87 26-48 (65)
93 cd01389 MATA_HMG-box MATA_HMG- 23.3 2.2E+02 0.0048 18.6 4.8 42 64-107 13-54 (77)
94 PF00505 HMG_box: HMG (high mo 22.7 1.5E+02 0.0033 18.5 3.6 40 65-106 13-52 (69)
95 PTZ00199 high mobility group p 21.9 2.4E+02 0.0051 19.6 4.6 51 45-106 26-76 (94)
96 PF06716 DUF1201: Protein of u 21.9 42 0.00091 20.9 0.6 6 1-6 1-6 (54)
97 PF07528 DZF: DZF domain; Int 20.6 28 0.0006 29.1 -0.5 57 2-58 176-246 (248)
98 PF15178 TOM_sub5: Mitochondri 20.3 1.2E+02 0.0027 18.9 2.5 24 49-72 2-25 (51)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-25 Score=191.48 Aligned_cols=73 Identities=53% Similarity=0.893 Sum_probs=67.8
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHcCChhHHHHhccccccccCC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP---NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAP 115 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 115 (178)
|..+|||+||||+++||.+|||+|||+|+++||||+|+ +++++|++|++||+||+||++|++||+++..++..
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~ 76 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKA 76 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccccc
Confidence 35789999999999999999999999999999999997 35799999999999999999999999999988753
No 2
>KOG0713|consensus
Probab=99.88 E-value=3.7e-23 Score=175.47 Aligned_cols=74 Identities=55% Similarity=0.897 Sum_probs=68.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHHcCChhHHHHhccccccccCCC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSNPEKRELYDQGASCLMAPL 116 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~---~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 116 (178)
...+|||+||||+++|+..|||+|||+|++++|||+||++ .+.|+.|+.||+||+||++|+.||.+|++++...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 4468999999999999999999999999999999999764 5889999999999999999999999999988743
No 3
>KOG0712|consensus
Probab=99.86 E-value=5.5e-22 Score=169.57 Aligned_cols=75 Identities=65% Similarity=1.012 Sum_probs=70.5
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhccccccccCCCCC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGL 118 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~ 118 (178)
.+..||+||||+++||.+|||+|||+|+++|||||||++.++|++|+.||+||+||++|.+||++|+.+++.++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~ 76 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG 76 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999998865543
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.7e-21 Score=165.33 Aligned_cols=71 Identities=38% Similarity=0.684 Sum_probs=65.1
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..+|||+||||+++|+.++||+|||+|+++||||+++ .++++|++|++||+||+||.+|+.||+++..++.
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 3579999999999999999999999999999999984 4678999999999999999999999999876543
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=164.75 Aligned_cols=70 Identities=50% Similarity=0.799 Sum_probs=64.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++||.+|||+|||+|+++||||+++. ++++|++|++||+||+||.+|+.||+++..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 4699999999999999999999999999999999863 568999999999999999999999999876654
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=165.64 Aligned_cols=76 Identities=50% Similarity=0.809 Sum_probs=68.7
Q ss_pred CCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 38 PRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 38 ~~~~~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
+.+..+...|||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||.++..++.
T Consensus 20 ~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 20 RRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred cccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 34555667899999999999999999999999999999999874 59999999999999999999999999887654
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.9e-20 Score=159.62 Aligned_cols=71 Identities=51% Similarity=0.862 Sum_probs=65.0
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
...|||+||||+++|+.+|||+|||+|+++||||+++. ++++|++|++||+||+||.+|+.||+++..++.
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 35799999999999999999999999999999999853 468999999999999999999999999887654
No 8
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.9e-20 Score=159.55 Aligned_cols=73 Identities=52% Similarity=0.792 Sum_probs=66.7
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
|+...|||+||||+++|+.+|||+|||+|+++||||+++ .++++|++|++||++|+|+.+|+.||+++..++.
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 456789999999999999999999999999999999984 4678999999999999999999999998876543
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.5e-19 Score=157.63 Aligned_cols=69 Identities=46% Similarity=0.855 Sum_probs=63.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHHcCChhHHHHhcccccccc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN----EGEKFKQISMAYEVLSNPEKRELYDQGASCLM 113 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 113 (178)
..|||+||||+++|+.+|||+|||+|+++||||+++. ++++|++|++||+||+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 5799999999999999999999999999999999864 35799999999999999999999999887654
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=158.23 Aligned_cols=70 Identities=47% Similarity=0.787 Sum_probs=64.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.+|||+|||+|+++||||+++ .++++|+.|++||++|+||.+|+.||+++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 469999999999999999999999999999999985 4568999999999999999999999999877653
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.9e-20 Score=159.96 Aligned_cols=67 Identities=49% Similarity=0.804 Sum_probs=62.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhcccccc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASC 111 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~ 111 (178)
.+|||+||||+++|+.+|||+|||+|+++||||++++ ++++|++|++||+||+||++|+.||+++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 4799999999999999999999999999999999863 468999999999999999999999998753
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2e-19 Score=157.70 Aligned_cols=73 Identities=52% Similarity=0.886 Sum_probs=66.1
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
|+...|||+||||+++|+.++||+|||+|+++||||++++ ++++|++|++||+||+|+.+|+.||.++..++.
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 4456799999999999999999999999999999999863 467999999999999999999999999876654
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2e-19 Score=157.28 Aligned_cols=71 Identities=49% Similarity=0.824 Sum_probs=65.0
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..+|||+||||+++|+.+|||+|||+|+++||||+++ .++++|++|++||++|+||.+|+.||+++..++.
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 3579999999999999999999999999999999985 3568999999999999999999999999876654
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.4e-19 Score=156.92 Aligned_cols=70 Identities=51% Similarity=0.817 Sum_probs=64.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.+|||+|||+|+++||||+++ .++++|++|++||++|+||.+|+.||+++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 579999999999999999999999999999999985 4578999999999999999999999999887654
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.6e-19 Score=155.14 Aligned_cols=71 Identities=49% Similarity=0.875 Sum_probs=65.2
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
...|||+||||+++|+.++||+|||+|+++||||++++ ++++|+.|++||+||+||.+|+.||+++..++.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 35799999999999999999999999999999999864 468899999999999999999999999887654
No 16
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.9e-19 Score=155.69 Aligned_cols=70 Identities=57% Similarity=0.914 Sum_probs=64.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
.+|||+||||+++|+.++||+|||+|+++||||+++ .+.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 73 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFS 73 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccc
Confidence 469999999999999999999999999999999985 4678999999999999999999999998876653
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4e-19 Score=150.55 Aligned_cols=69 Identities=54% Similarity=0.844 Sum_probs=63.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhcccccccc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLM 113 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 113 (178)
..|||+||||+++|+.++||+|||+|+++||||+++ .++++|+.|++||++|+|+.+|+.||.++..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 579999999999999999999999999999999985 457899999999999999999999999887653
No 18
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5.6e-19 Score=153.90 Aligned_cols=70 Identities=44% Similarity=0.767 Sum_probs=64.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++|++|++||+||+|+.+|..||+++..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 3699999999999999999999999999999999864 457899999999999999999999999887654
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5e-19 Score=154.74 Aligned_cols=70 Identities=51% Similarity=0.793 Sum_probs=64.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.++||+|||+|+++||||+++ .++++|++|++||+||+||.+|+.||+++..++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 469999999999999999999999999999999984 4678999999999999999999999999877654
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.7e-19 Score=154.25 Aligned_cols=70 Identities=49% Similarity=0.870 Sum_probs=64.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.++||+|||+|+++||||++++ ++++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 4799999999999999999999999999999999864 357999999999999999999999999887654
No 21
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=5.1e-19 Score=117.35 Aligned_cols=60 Identities=53% Similarity=1.007 Sum_probs=57.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChH----HHHHHHHHHHHHcCChhHHHHhc
Q psy15361 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLSNPEKRELYD 106 (178)
Q Consensus 47 d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~----~~f~~I~~Ay~vL~d~~~R~~YD 106 (178)
|||+||||+++++.++||++|+++++++|||+++... +.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999986655 88999999999999999999998
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.2e-19 Score=154.80 Aligned_cols=70 Identities=49% Similarity=0.863 Sum_probs=64.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.++||+|||+|+++||||+++. ++++|+.|++||+||+||.+|+.||+++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 4699999999999999999999999999999999864 468999999999999999999999999887654
No 23
>KOG0716|consensus
Probab=99.76 E-value=6.8e-19 Score=145.63 Aligned_cols=72 Identities=51% Similarity=0.857 Sum_probs=66.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
....++|+||||+++++.++||++||+|++++|||++++ ..++|+.||+||+||+||.+|..||.+|..++.
T Consensus 28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 446789999999999999999999999999999999855 579999999999999999999999999887654
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.6e-19 Score=153.61 Aligned_cols=71 Identities=48% Similarity=0.758 Sum_probs=64.4
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhcc----ccccccC
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQ----GASCLMA 114 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~----~~~~~~~ 114 (178)
...|||+||||+++|+.++||+|||+|+++||||+++. ++++|++|++||+||+||.+|+.||+ ++..++.
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 35799999999999999999999999999999999853 46899999999999999999999998 7766553
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=151.43 Aligned_cols=70 Identities=56% Similarity=0.966 Sum_probs=64.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
..|||+||||+++|+.++||+|||+|+++||||++++ ++++|++|++||++|+|+.+|+.||+++..++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 5799999999999999999999999999999999863 457899999999999999999999998876654
No 26
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=152.96 Aligned_cols=66 Identities=55% Similarity=0.914 Sum_probs=62.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCChhHHHHhcccccc
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYEVLSNPEKRELYDQGASC 111 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~ 111 (178)
+|||+||||+++|+.++||+|||+|+++||||++++ ++++|+.|++||+||+|+.+|+.||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999875 468899999999999999999999998864
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.9e-18 Score=150.38 Aligned_cols=73 Identities=51% Similarity=0.857 Sum_probs=65.8
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
|+...|||+||||+++|+.+|||+|||+|+++||||++++ +.++|+.|++||++|+||.+|+.||.++..++.
T Consensus 1 ~~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred CCccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 3456799999999999999999999999999999999864 468899999999999999999999998876543
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=151.73 Aligned_cols=68 Identities=53% Similarity=0.853 Sum_probs=63.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhcccccccc
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLM 113 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 113 (178)
.|||+||||+++|+.++||+|||+|+++||||++++ ++++|+.|++||++|+|+.+|+.||+++..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 389999999999999999999999999999999864 46899999999999999999999999987654
No 29
>KOG0718|consensus
Probab=99.75 E-value=2.9e-18 Score=150.56 Aligned_cols=76 Identities=41% Similarity=0.725 Sum_probs=68.8
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHHcCChhHHHHhccccccccCCC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN------EGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPL 116 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~------~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 116 (178)
..+.+||.+|+|+++||.+|||+|||++++.|||||..+ ++++|++|.+||+||+||.+|.+||.+|.+|+...
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~ 85 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE 85 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence 346799999999999999999999999999999999743 35789999999999999999999999999998755
Q ss_pred CC
Q psy15361 117 GL 118 (178)
Q Consensus 117 ~~ 118 (178)
|+
T Consensus 86 gw 87 (546)
T KOG0718|consen 86 GW 87 (546)
T ss_pred Cc
Confidence 44
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.4e-18 Score=151.46 Aligned_cols=69 Identities=55% Similarity=0.907 Sum_probs=63.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
.|||+||||+++|+.++||+|||+|+++||||++++ ++++|++|++||++|+|+.+|+.||.++..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 699999999999999999999999999999999864 468999999999999999999999998876654
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.1e-18 Score=147.89 Aligned_cols=69 Identities=52% Similarity=0.881 Sum_probs=63.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN----EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
.|||+||||+++|+.+|||+|||+|++++|||+++. +.++|+.|++||++|+|+.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~ 75 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFG 75 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccc
Confidence 699999999999999999999999999999999864 458899999999999999999999998876553
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.73 E-value=5.4e-18 Score=147.05 Aligned_cols=68 Identities=56% Similarity=0.904 Sum_probs=63.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 47 d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
|||+||||+++|+.++||+|||+|+++||||+++ .+.++|+.|++||++|+|+.+|..||.++..++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999985 4568999999999999999999999998877654
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.2e-18 Score=146.63 Aligned_cols=69 Identities=43% Similarity=0.729 Sum_probs=63.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
.|||+||||+++|+.+|||+|||+|+++||||+++ .++++|++|++||++|+|+.+|+.||+++..++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 69999999999999999999999999999999985 3568999999999999999999999998876543
No 34
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=1.4e-17 Score=156.81 Aligned_cols=78 Identities=33% Similarity=0.514 Sum_probs=70.7
Q ss_pred CCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCChhHHHHhccccccccCCCC
Q psy15361 40 PNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYEVLSNPEKRELYDQGASCLMAPLG 117 (178)
Q Consensus 40 ~~~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~ 117 (178)
..++...+||+||||+++|+..+||+|||+|+++||||++++ +..+|+.|++||+||+||.+|+.||.+|..++...+
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~~ 646 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGVN 646 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCCC
Confidence 556778899999999999999999999999999999999864 457899999999999999999999999988866544
No 35
>KOG0691|consensus
Probab=99.72 E-value=1e-17 Score=141.67 Aligned_cols=75 Identities=52% Similarity=0.853 Sum_probs=68.3
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHHcCChhHHHHhccccccccCCC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSNPEKRELYDQGASCLMAPL 116 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~---~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~ 116 (178)
|....|||+||||+.+++..+|++||+..+++||||+||++ .++|+.+.+||+||+|+.+|..||..+..+....
T Consensus 1 M~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 1 MVKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred CcccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 44578999999999999999999999999999999999765 5889999999999999999999999888776554
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=145.57 Aligned_cols=67 Identities=52% Similarity=0.859 Sum_probs=62.6
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCChhHHHHhccccccc
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYEVLSNPEKRELYDQGASCL 112 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~ 112 (178)
.|||+||||+++|+.++||+|||+|++++|||+++. ++++|+.|++||++|+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 489999999999999999999999999999999964 5689999999999999999999999988764
No 37
>KOG0715|consensus
Probab=99.71 E-value=1.7e-17 Score=140.45 Aligned_cols=68 Identities=50% Similarity=0.757 Sum_probs=63.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCChhHHHHhccccccc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKN--PNEGEKFKQISMAYEVLSNPEKRELYDQGASCL 112 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~--~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~ 112 (178)
..|||+||||+++|+..|||+||++|+++||||.+ +++.++|++|.+||++|+|+++|..||..+..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 33999999999999999999999999999999998 456789999999999999999999999988875
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.9e-17 Score=144.74 Aligned_cols=69 Identities=51% Similarity=0.857 Sum_probs=63.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
.|||+||||+++|+.++||+|||+|+++||||+++ .++++|+.|++||++|+||.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 59999999999999999999999999999999985 4678999999999999999999999998876543
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.71 E-value=1.9e-17 Score=141.13 Aligned_cols=66 Identities=42% Similarity=0.721 Sum_probs=61.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP--NEGEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
.+|||+||||+++++.++||+|||+|++++|||+++ .++++|+.|++||++|+|+.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 369999999999999999999999999999999984 467899999999999999999999998764
No 40
>KOG0717|consensus
Probab=99.69 E-value=2e-17 Score=145.10 Aligned_cols=71 Identities=48% Similarity=0.916 Sum_probs=64.6
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHcCChhHHHHhcccccccc
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRELYDQGASCLM 113 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 113 (178)
+..+.||+||||.++++..+||++||+|+++||||++|.. .++|+.|+.||+|||||..|+.||.+...-+
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 4567899999999999999999999999999999998753 5889999999999999999999999877443
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.68 E-value=9.7e-17 Score=104.75 Aligned_cols=55 Identities=69% Similarity=1.121 Sum_probs=51.3
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHHcCChh
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN----EGEKFKQISMAYEVLSNPE 100 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~ 100 (178)
.|||+||||+++++.++||++|+++++++|||++++ ..+.|..|++||++|++|.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 5689999999999999985
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.67 E-value=1.7e-16 Score=101.78 Aligned_cols=52 Identities=69% Similarity=1.179 Sum_probs=49.3
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHcCC
Q psy15361 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN---EGEKFKQISMAYEVLSN 98 (178)
Q Consensus 47 d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d 98 (178)
|||+||||+++++.++||++|+++++++|||++++ +.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999976 67899999999999986
No 43
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=3.5e-16 Score=121.08 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=62.9
Q ss_pred cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhccccccccCC
Q psy15361 46 TTFYDILGVKPNC--TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQGASCLMAP 115 (178)
Q Consensus 46 ~d~Y~vLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 115 (178)
..+|+||||+++| |.++||+|||++++++|||+++ ++++|+.|++||++|+++.+|..||.++......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-hhHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 4689999999999 9999999999999999999975 4589999999999999999999999988766443
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.63 E-value=3.7e-16 Score=144.50 Aligned_cols=70 Identities=41% Similarity=0.706 Sum_probs=63.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCChhHHHHhccccccccCC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYEVLSNPEKRELYDQGASCLMAP 115 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 115 (178)
.|||+||||+++|+.++||++||+|++++|||+++. +..+|+.|++||++|+|+.+|+.||.++..+...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~ 73 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDR 73 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccc
Confidence 599999999999999999999999999999999853 4578999999999999999999999988766543
No 45
>KOG0719|consensus
Probab=99.63 E-value=3.9e-16 Score=126.98 Aligned_cols=72 Identities=44% Similarity=0.776 Sum_probs=64.1
Q ss_pred CCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHHcCChhHHHHhccccccc
Q psy15361 41 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN-----EGEKFKQISMAYEVLSNPEKRELYDQGASCL 112 (178)
Q Consensus 41 ~~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~-----~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~ 112 (178)
..+..+|.|+||||.++|+..+|++||+++++++|||+++. +.++|+.++.||+||+|.++|+.||..|.-.
T Consensus 9 ~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 9 GSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34566799999999999999999999999999999999843 3578999999999999999999999866643
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=120.07 Aligned_cols=68 Identities=59% Similarity=1.013 Sum_probs=62.3
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHcCChhHHHHhcccc
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRELYDQGA 109 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 109 (178)
|....+||+||||+++++..+||++|+++++++|||+++.+ .+.|+.|++||++|+|+.+|..||..+
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34567999999999999999999999999999999998753 489999999999999999999999863
No 47
>KOG0721|consensus
Probab=99.59 E-value=2e-15 Score=121.61 Aligned_cols=72 Identities=38% Similarity=0.689 Sum_probs=64.5
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNP---NEGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
...-|+|+||||+++++..|||+|||+|++++||||++ ++++.|..|++||+.|+|...|..|..+|.....
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 44669999999999999999999999999999999983 4578899999999999999999999998875543
No 48
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=2.8e-14 Score=112.07 Aligned_cols=65 Identities=28% Similarity=0.446 Sum_probs=56.9
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChHH------HHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 46 TTFYDILGVKPN--CTQDELKKAYRKLALKYHPDKNPNEGE------KFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 46 ~d~Y~vLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~~~------~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
.|||+||||++. ++..+|+++|+++++++|||+..+..+ .+..||+||++|+||.+|+.|+-...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999996 789999999999999999999865432 36799999999999999999986543
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=3e-14 Score=112.42 Aligned_cols=64 Identities=27% Similarity=0.478 Sum_probs=56.1
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHHcCChhHHHHhcccc
Q psy15361 46 TTFYDILGVKPN--CTQDELKKAYRKLALKYHPDKNPNE--------GEKFKQISMAYEVLSNPEKRELYDQGA 109 (178)
Q Consensus 46 ~d~Y~vLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~--------~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 109 (178)
.|||+||||++. ++..+|+++|+++++++|||+..+. .+.+..||+||++|+||.+|..|+-..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 389999999996 6889999999999999999996432 357899999999999999999998543
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=6.4e-14 Score=110.68 Aligned_cols=68 Identities=26% Similarity=0.490 Sum_probs=59.1
Q ss_pred CCccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 43 VKETTFYDILGVKPN--CTQDELKKAYRKLALKYHPDKNPNE--------GEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~--------~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
|...|||++|||++. .+..+|+++|+++++++|||+..+. .+.+..||+||++|++|.+|+.|+-...
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 356799999999996 5789999999999999999997432 3569999999999999999999996443
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=1.6e-13 Score=108.78 Aligned_cols=64 Identities=23% Similarity=0.400 Sum_probs=55.7
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHHcCChhHHHHhcccc
Q psy15361 46 TTFYDILGVKPN--CTQDELKKAYRKLALKYHPDKNPNE--------GEKFKQISMAYEVLSNPEKRELYDQGA 109 (178)
Q Consensus 46 ~d~Y~vLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~--------~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 109 (178)
.|||+||||++. ++..+|+++|+++++++|||+.+.. .+.+..||+||++|++|.+|..|.-..
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 699999999995 6889999999999999999997532 233689999999999999999999633
No 52
>KOG0624|consensus
Probab=99.44 E-value=2.5e-13 Score=116.85 Aligned_cols=67 Identities=51% Similarity=0.837 Sum_probs=60.5
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE------GEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~------~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
..+|||+||||.++|+..||-+|||+++.+||||...+. +.+|..|..|-+||+||++|+.||.+..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 368999999999999999999999999999999987543 4679999999999999999999997533
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.43 E-value=2e-13 Score=101.01 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=50.1
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLS 97 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 97 (178)
.+...++|+||||+++++.++||++||+|++++|||++ ++.+.|++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 45567999999999999999999999999999999995 55689999999999985
No 54
>KOG0720|consensus
Probab=99.42 E-value=1.5e-13 Score=120.84 Aligned_cols=67 Identities=40% Similarity=0.717 Sum_probs=62.6
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKN--PNEGEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 44 ~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~--~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
+..|+|.+|||+++++.++||+.||+++...||||| +.+++.|+.++.||++|+|+.+|..||....
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 377999999999999999999999999999999998 6678999999999999999999999997544
No 55
>KOG0550|consensus
Probab=99.35 E-value=6.9e-13 Score=115.86 Aligned_cols=72 Identities=47% Similarity=0.772 Sum_probs=64.8
Q ss_pred CCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 39 RPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 39 ~~~~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
.+++.+.+|||.||||.++++..+||++||++++.+|||++.++ +.+|+.|-+||.+|+||.+|..||....
T Consensus 366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 34566788999999999999999999999999999999998655 5789999999999999999999997543
No 56
>KOG0714|consensus
Probab=99.33 E-value=1.8e-12 Score=106.98 Aligned_cols=71 Identities=52% Similarity=0.892 Sum_probs=63.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHcCChhHHHHhccccccccCC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRELYDQGASCLMAP 115 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 115 (178)
..|||.||||.++++..+|++||+++++++|||+++.. ..+|++|.+||++|+|+.+|..||.++..+...
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 36899999999999999999999999999999998654 346999999999999999999999999855554
No 57
>PHA02624 large T antigen; Provisional
Probab=99.32 E-value=1.9e-12 Score=118.52 Aligned_cols=61 Identities=28% Similarity=0.471 Sum_probs=57.0
Q ss_pred ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhc
Q psy15361 45 ETTFYDILGVKPNC--TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYD 106 (178)
Q Consensus 45 ~~d~Y~vLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD 106 (178)
..++|+||||++++ +.++||+|||++++++|||++ +++++|++|++||++|+++.++..|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 55899999999999 999999999999999999996 45689999999999999999999993
No 58
>KOG0722|consensus
Probab=99.32 E-value=9.4e-13 Score=108.71 Aligned_cols=68 Identities=38% Similarity=0.668 Sum_probs=61.2
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
+-..|.|+||||++.++..+|++|||+|++++|||++++ ..+.|..|..||++|.|.+.|..||-...
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 446799999999999999999999999999999999854 44679999999999999999999997544
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.28 E-value=4.5e-12 Score=106.43 Aligned_cols=56 Identities=38% Similarity=0.560 Sum_probs=49.8
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHHcCC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN----------EGEKFKQISMAYEVLSN 98 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~----------~~~~f~~I~~Ay~vL~d 98 (178)
....++|+||||++++|.++||++||+|++++|||+... +.++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999521 35789999999999975
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.22 E-value=3.3e-11 Score=95.29 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=56.3
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 46 TTFYDILGVKPN--CTQDELKKAYRKLALKYHPDKNPNE--------GEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 46 ~d~Y~vLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~--------~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
.|||++|||++. .+...|+++|+++.+++|||+.... .+....||+||++|+||.+|+.|=-...
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999996 7999999999999999999997432 2457899999999999999999975444
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.9e-10 Score=101.45 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=61.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHHcCChhHHHHhccccccccC
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--------EGEKFKQISMAYEVLSNPEKRELYDQGASCLMA 114 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 114 (178)
-|+|+||||+.+++..+||++||+|+.++||||-+. -++.+..|++||..|+|...|..|-.+|.....
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 389999999999999999999999999999999754 157899999999999999999999988765544
No 62
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.8e-10 Score=95.03 Aligned_cols=80 Identities=30% Similarity=0.392 Sum_probs=69.3
Q ss_pred hhhhcCCCCCCCCCccCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHHcCChhHH
Q psy15361 31 AIEACLPPRPNMVKETTFYDILGVKP---NCTQDELKKAYRKLALKYHPDKN-----PNEGEKFKQISMAYEVLSNPEKR 102 (178)
Q Consensus 31 ~~~~~~~~~~~~~~~~d~Y~vLgv~~---~as~~eIK~aYr~l~~~~HPDk~-----~~~~~~f~~I~~Ay~vL~d~~~R 102 (178)
+...+...++.-++..|+|.+|||+. .++..+|.+++++.+.+||||+. .+..+.|..|+.||+||+|+.+|
T Consensus 28 ~~~~~~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R 107 (379)
T COG5269 28 VLNLYTREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLR 107 (379)
T ss_pred HHHHHHhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHH
Confidence 33455667788899999999999987 68899999999999999999997 34568999999999999999999
Q ss_pred HHhccccc
Q psy15361 103 ELYDQGAS 110 (178)
Q Consensus 103 ~~YD~~~~ 110 (178)
..||...-
T Consensus 108 ~qyDS~df 115 (379)
T COG5269 108 LQYDSNDF 115 (379)
T ss_pred hhcccccc
Confidence 99997443
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=1.2e-09 Score=85.18 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHHcCChhHHHHhccccc
Q psy15361 58 CTQDELKKAYRKLALKYHPDKNPN--------EGEKFKQISMAYEVLSNPEKRELYDQGAS 110 (178)
Q Consensus 58 as~~eIK~aYr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~~~~ 110 (178)
.+..+|+++|+++++++|||+.++ +...+..||+||++|+||.+|+.|+-...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 477899999999999999998533 23679999999999999999999997554
No 64
>KOG1150|consensus
Probab=98.97 E-value=1.1e-09 Score=87.83 Aligned_cols=74 Identities=34% Similarity=0.623 Sum_probs=62.1
Q ss_pred hhhhcCCCCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHcCChhHHHHh
Q psy15361 31 AIEACLPPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRELY 105 (178)
Q Consensus 31 ~~~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~Y 105 (178)
++..++.|.. .--+-|+|+||.|.|..+.++||+.||+|++..|||+|+++ ...|..|.+||..|-|+..|..-
T Consensus 39 qIeRllrpgs-tyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 39 QIERLLRPGS-TYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred HHHHHhcCCc-cccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445666653 34577999999999999999999999999999999999876 35699999999999999866443
No 65
>KOG1789|consensus
Probab=98.73 E-value=2e-08 Score=96.17 Aligned_cols=79 Identities=38% Similarity=0.612 Sum_probs=68.0
Q ss_pred ccCCCCCCCCchhhhh-------cCCCCCCCCCccCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCChHHHHH
Q psy15361 19 KFPDVIPVDKVPAIEA-------CLPPRPNMVKETTFYDILGVKPN----CTQDELKKAYRKLALKYHPDKNPNEGEKFK 87 (178)
Q Consensus 19 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~Y~vLgv~~~----as~~eIK~aYr~l~~~~HPDk~~~~~~~f~ 87 (178)
+||+---.|+++-+.. -....|.|++..+.|+||.|+-+ ...+.||++|++|+.+|||||||+..++|.
T Consensus 1247 rFPdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe 1326 (2235)
T KOG1789|consen 1247 RFPDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFE 1326 (2235)
T ss_pred cCCCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 6888888888876553 34567788999999999999763 355889999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy15361 88 QISMAYEVLS 97 (178)
Q Consensus 88 ~I~~Ay~vL~ 97 (178)
.||+||+.|.
T Consensus 1327 ~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1327 RVNKAYELLS 1336 (2235)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 66
>KOG0723|consensus
Probab=98.43 E-value=3.8e-07 Score=66.19 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=48.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCh
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNP 99 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~ 99 (178)
|+.+..-.||||+++++.+.||.++|++...+|||+.++. -.-.+||+|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-YLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-HHHHHHHHHHHHHhcc
Confidence 4455556699999999999999999999999999996654 7778899999999754
No 67
>KOG0568|consensus
Probab=98.31 E-value=8.4e-07 Score=72.97 Aligned_cols=57 Identities=33% Similarity=0.584 Sum_probs=49.9
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHH-HcCC
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN--EGEKFKQISMAYE-VLSN 98 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~--~~~~f~~I~~Ay~-vL~d 98 (178)
.-+-..||.||||..+++.++++.+|..|++++|||...+ +.+.|.+|.+||. ||+.
T Consensus 43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3446689999999999999999999999999999999743 4588999999999 7764
No 68
>KOG3192|consensus
Probab=97.80 E-value=3.2e-05 Score=59.94 Aligned_cols=67 Identities=30% Similarity=0.562 Sum_probs=55.0
Q ss_pred CCCCccCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHHcCChhHHHHhcc
Q psy15361 41 NMVKETTFYDILGVKP--NCTQDELKKAYRKLALKYHPDKNP--------NEGEKFKQISMAYEVLSNPEKRELYDQ 107 (178)
Q Consensus 41 ~~~~~~d~Y~vLgv~~--~as~~eIK~aYr~l~~~~HPDk~~--------~~~~~f~~I~~Ay~vL~d~~~R~~YD~ 107 (178)
.+....+||.++|... ...+.-++..|.-..+++|||+.. -+.+....+|+||.+|.||..|+.|=.
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556789999998755 457777787999999999999831 134779999999999999999999964
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0016 Score=51.41 Aligned_cols=51 Identities=43% Similarity=0.623 Sum_probs=43.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHHc
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPN----------EGEKFKQISMAYEVL 96 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~----------~~~~f~~I~~Ay~vL 96 (178)
.+.|.+||+.......+|+++|+++....|||+-.. ..++++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999998411 247788899988754
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.40 E-value=0.0076 Score=45.45 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=41.0
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChh
Q psy15361 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPE 100 (178)
Q Consensus 42 ~~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~ 100 (178)
.|.......||||++..+.++|.+.|.+|...++|++++ +.-.-.+|..|.+.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG-SfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGG-SFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC-CHHHHHHHHHHHHHHHHHH
Confidence 355567889999999999999999999999999999854 4466667888888886544
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0023 Score=50.43 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=52.1
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHHHHcCChhHHHHhccccccc
Q psy15361 47 TFYDILGVKPNC--TQDELKKAYRKLALKYHPDKNPNE--------GEKFKQISMAYEVLSNPEKRELYDQGASCL 112 (178)
Q Consensus 47 d~Y~vLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~--------~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~ 112 (178)
+++.++|+++.+ ..+.++..|+.+.+.+|||+.... -..+..++.||.+|.+|..|..|=.....|
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g 77 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG 77 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence 466667776643 566789999999999999997432 246889999999999999999997655533
No 72
>KOG0431|consensus
Probab=96.31 E-value=0.0053 Score=55.45 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHH
Q psy15361 54 VKPNCTQDELKKAYRKLALKYHPDKNPNE----------GEKFKQISMAYEV 95 (178)
Q Consensus 54 v~~~as~~eIK~aYr~l~~~~HPDk~~~~----------~~~f~~I~~Ay~v 95 (178)
|..=.+.++||++||+.++..||||.++. ++.|..+++||..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 33346999999999999999999997432 3446666666654
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=90.81 E-value=0.37 Score=31.30 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.0
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSN 98 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d 98 (178)
-.+.|++|||+++.+.+.|-.+|+.... ..| .......+|..+|.+
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHHH
Confidence 3468999999999999999999999877 222 234445555555543
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=89.30 E-value=0.86 Score=36.73 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC
Q psy15361 55 KPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLS 97 (178)
Q Consensus 55 ~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 97 (178)
+++|+.+||++|+.++..+| .++++.-..|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHH
Confidence 57899999999999999988 444588889999999644
No 75
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=84.08 E-value=0.66 Score=41.61 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCchhhhhcCCHHHHHHH---HHHHHhchhcccCCCCccccccC
Q psy15361 138 NGEEVVLETMDPEKERAQ---NAYRQAHQEDEDQGPSRVQCATN 178 (178)
Q Consensus 138 ~g~~v~~e~~d~e~Er~q---~~~~~~~edd~~~g~~~~~c~~~ 178 (178)
..+++.+.++|+++...+ +.|.+.++++..++-.+||||+|
T Consensus 378 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~c~~q 421 (421)
T PTZ00037 378 EIEVVTAQNVDPEEVKDRDQKQQYQEDEDDEHHQEGERVACRQQ 421 (421)
T ss_pred cceeEecccCCHHHhhhhHHHHhhccccccccCCCCCccccCCC
Confidence 456677778888776333 34444444444434478999987
No 76
>KOG0724|consensus
Probab=82.95 E-value=1.2 Score=38.18 Aligned_cols=52 Identities=40% Similarity=0.606 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-------ChHHHHHHHHHHHHHcCChhHHHHhcccc
Q psy15361 58 CTQDELKKAYRKLALKYHPDKNP-------NEGEKFKQISMAYEVLSNPEKRELYDQGA 109 (178)
Q Consensus 58 as~~eIK~aYr~l~~~~HPDk~~-------~~~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 109 (178)
++..+|..+|+..++..||++.. ...+.+++|.+||.+|.+...|..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 46778999999999999999864 23467999999999999866555555543
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=72.80 E-value=8.3 Score=28.31 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHHcCCh
Q psy15361 56 PNCTQDELKKAYRKLALKYHPDKNPN-------EGEKFKQISMAYEVLSNP 99 (178)
Q Consensus 56 ~~as~~eIK~aYr~l~~~~HPDk~~~-------~~~~f~~I~~Ay~vL~d~ 99 (178)
+..+..+++.+.|.+.++.|||.... +++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567899999999999999997522 234577777766666543
No 78
>KOG3442|consensus
Probab=68.47 E-value=7.3 Score=29.32 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC
Q psy15361 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLS 97 (178)
Q Consensus 43 ~~~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 97 (178)
+....--+||+|+...+.++|.+.|..|...+.+.+.++- -.--+|-.|-+.|.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSF-YLQSKVfRAkErld 109 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF-YLQSKVFRAKERLD 109 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce-eehHHHHHHHHHHH
Confidence 4444667899999999999999999999999887775432 22223444555443
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=48.65 E-value=12 Score=17.13 Aligned_cols=13 Identities=54% Similarity=0.830 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcC
Q psy15361 85 KFKQISMAYEVLS 97 (178)
Q Consensus 85 ~f~~I~~Ay~vL~ 97 (178)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887764
No 80
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=44.69 E-value=1e+02 Score=21.21 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=28.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh
Q psy15361 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE 82 (178)
Q Consensus 47 d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~ 82 (178)
|--.+.|+.|.++.+||..|=.+.++|..=-..|+.
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~ 39 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA 39 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch
Confidence 444677888999999999999999999876665543
No 81
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=43.28 E-value=94 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=29.6
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh
Q psy15361 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE 82 (178)
Q Consensus 46 ~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~ 82 (178)
+|.-+++|+.|-++..||+.+-++.++++.--..|+.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 3556789999999999999999988888865555543
No 82
>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional
Probab=42.03 E-value=24 Score=30.82 Aligned_cols=10 Identities=50% Similarity=0.614 Sum_probs=8.7
Q ss_pred hhhhcccccc
Q psy15361 9 QYGTTGIFSV 18 (178)
Q Consensus 9 ~~~~~~~~~~ 18 (178)
.|.||+|||+
T Consensus 30 ~V~tTgi~CR 39 (353)
T PRK15435 30 AVRTTGIFCR 39 (353)
T ss_pred EEeecceEEc
Confidence 5789999999
No 83
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=37.83 E-value=92 Score=20.23 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhcc
Q psy15361 65 KAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQ 107 (178)
Q Consensus 65 ~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~ 107 (178)
+..+...+.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~--~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK--ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566667789985 345888999999999998877665554
No 84
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=36.33 E-value=54 Score=20.97 Aligned_cols=30 Identities=30% Similarity=0.646 Sum_probs=19.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy15361 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKN 79 (178)
Q Consensus 47 d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~ 79 (178)
-||+||+++. .+ +|=|..|-+ .++-||+..
T Consensus 12 AFY~vl~~~n-Lt-eeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPN-LT-EEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTT-S--HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHcCCC-cC-HHHHHhHHH-HHhhChHHH
Confidence 4899999865 33 445667766 456788874
No 85
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=34.19 E-value=1.3e+02 Score=21.00 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhc
Q psy15361 53 GVKPNC-TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYD 106 (178)
Q Consensus 53 gv~~~a-s~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD 106 (178)
|++|+. ...+|-+.+..++..+++ .+.+.+..|.+.| +.|+.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 555543 333566777777777776 3458888899888 78898889888
No 86
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=30.82 E-value=15 Score=24.06 Aligned_cols=31 Identities=32% Similarity=0.773 Sum_probs=21.2
Q ss_pred ccCchhhcCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q psy15361 45 ETTFYDILGVKPNCTQDEL-KKAYRKLALKYHPDKN 79 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eI-K~aYr~l~~~~HPDk~ 79 (178)
+.+++++||+++ +++ ......+....|||-.
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 457899999865 566 5666777788999863
No 87
>KOG1912|consensus
Probab=27.97 E-value=30 Score=33.86 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHHhhhhccccccccCCCC--CCCCchhhhhcCCCCCCCCCccCchhhcCCCCCCCHHHHHHHH------HHHHHHhCC
Q psy15361 5 TRILQYGTTGIFSVKFPDVI--PVDKVPAIEACLPPRPNMVKETTFYDILGVKPNCTQDELKKAY------RKLALKYHP 76 (178)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIK~aY------r~l~~~~HP 76 (178)
-|++.+.-|+--...+|... -...+|-...+..|.+..+.++.||.-+-+++..- .|+... |+.+....|
T Consensus 714 frlldvdlc~~~~~~l~~d~~~Rf~~m~mks~~ll~~e~~lvkPsWfsstl~~k~s~--~i~~~~l~~~~~r~ysid~s~ 791 (1062)
T KOG1912|consen 714 FRLLDVDLCEKSPLVLPNDNKERFRVMPMKSPPLLPKEHALVKPSWFSSTLYKKRSH--NIVGKHLSSKDLRSYSIDRSP 791 (1062)
T ss_pred eEEEEEEecccCceecCCCCceeEEeccccCCccccCccccccccccccceeccccc--cchhhhccCCccccccccCCC
Confidence 44555554544444555522 22333333344555566666777776555544221 111111 222222222
Q ss_pred CCCCChHHHHHHHHHHHHHcCChhHHHHhccc
Q psy15361 77 DKNPNEGEKFKQISMAYEVLSNPEKRELYDQG 108 (178)
Q Consensus 77 Dk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~ 108 (178)
--.|...+.+..|.+-|.-|.|.++.+.|+..
T Consensus 792 ~d~pe~~em~~~i~e~~~sl~~Dek~~ll~~~ 823 (1062)
T KOG1912|consen 792 ADDPEVSEMELKILEPYRSLLDDEKAKLLEAD 823 (1062)
T ss_pred CCCcccHHHHHHHHHHHhhhCcHHHHHHhHHH
Confidence 22366789999999999999999999999863
No 88
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.78 E-value=85 Score=17.29 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy15361 60 QDELKKAYRKLALKYHP 76 (178)
Q Consensus 60 ~~eIK~aYr~l~~~~HP 76 (178)
.++.+.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999983
No 89
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=25.00 E-value=68 Score=21.60 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc
Q psy15361 65 KAYRKLALKYHPDKNPNEGEKFKQISMAYEVL 96 (178)
Q Consensus 65 ~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL 96 (178)
+-|.++.+.||-+.-..-++.-..|.+.|+.+
T Consensus 35 k~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 35 KMFNKLLKLYHKQEREEFEAENEEVVELYDAV 66 (69)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56788889999765443445556677777654
No 90
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.98 E-value=1.8e+02 Score=17.95 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhcc
Q psy15361 67 YRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQ 107 (178)
Q Consensus 67 Yr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~ 107 (178)
.+...+.-||+. +..+..+.|.+.|..|++.++....+.
T Consensus 15 ~r~~~~~~~p~~--~~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDA--SVTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445556678884 356889999999999997766555444
No 91
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.75 E-value=1.7e+02 Score=17.79 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhcc
Q psy15361 64 KKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQ 107 (178)
Q Consensus 64 K~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~ 107 (178)
.+.++...+..||+. ...+....|...|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL--SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677788884 345788899999999997666555543
No 92
>COG2879 Uncharacterized small protein [Function unknown]
Probab=24.23 E-value=1.2e+02 Score=20.06 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCCCCChHHHHH
Q psy15361 65 KAYRKLALKYHPDKNPNEGEKFK 87 (178)
Q Consensus 65 ~aYr~l~~~~HPDk~~~~~~~f~ 87 (178)
..|-.-.++.|||+.+-..+.|.
T Consensus 26 dnYVehmr~~hPd~p~mT~~EFf 48 (65)
T COG2879 26 DNYVEHMRKKHPDKPPMTYEEFF 48 (65)
T ss_pred HHHHHHHHHhCcCCCcccHHHHH
Confidence 35777788999999876654443
No 93
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=23.33 E-value=2.2e+02 Score=18.56 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhcc
Q psy15361 64 KKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYDQ 107 (178)
Q Consensus 64 K~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~ 107 (178)
.+.++..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 13 ~~~~r~~~~~~~p~~--~~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGL--TNNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 355677778889986 345888899999999997766554443
No 94
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=22.67 E-value=1.5e+02 Score=18.50 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhc
Q psy15361 65 KAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYD 106 (178)
Q Consensus 65 ~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD 106 (178)
..++...+..||+.. ..+..+.|.+.|.-|++.++....+
T Consensus 13 ~~~~~~~k~~~p~~~--~~~i~~~~~~~W~~l~~~eK~~y~~ 52 (69)
T PF00505_consen 13 KEKRAKLKEENPDLS--NKEISKILAQMWKNLSEEEKAPYKE 52 (69)
T ss_dssp HHHHHHHHHHSTTST--HHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc--cccchhhHHHHHhcCCHHHHHHHHH
Confidence 445566667799876 5678889999999997665544433
No 95
>PTZ00199 high mobility group protein; Provisional
Probab=21.92 E-value=2.4e+02 Score=19.56 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=34.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCChhHHHHhc
Q psy15361 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYD 106 (178)
Q Consensus 45 ~~d~Y~vLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD 106 (178)
+.+.|-++- ...|..++.-||+...+..+....|.+-|..|++.++...++
T Consensus 26 P~sAY~~F~-----------~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~ 76 (94)
T PTZ00199 26 ALSAYMFFA-----------KEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEK 76 (94)
T ss_pred CCcHHHHHH-----------HHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457777762 223444556789875445577888999999999766654444
No 96
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.86 E-value=42 Score=20.94 Aligned_cols=6 Identities=83% Similarity=1.514 Sum_probs=3.8
Q ss_pred ChHHHH
Q psy15361 1 MDCVTR 6 (178)
Q Consensus 1 ~~~~~~ 6 (178)
||||-|
T Consensus 1 MDCvLR 6 (54)
T PF06716_consen 1 MDCVLR 6 (54)
T ss_pred CchHHH
Confidence 666665
No 97
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=20.59 E-value=28 Score=29.09 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=32.2
Q ss_pred hHHHHHHhhhhccccc---cccCCCCCCCCchhhhh-----------cCCCCCCCCCccCchhhcCCCCCC
Q psy15361 2 DCVTRILQYGTTGIFS---VKFPDVIPVDKVPAIEA-----------CLPPRPNMVKETTFYDILGVKPNC 58 (178)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~d~Y~vLgv~~~a 58 (178)
||+.||++.=.+|+|- .++-|-+..+++..+.. ..-.....+.-.-||+|||+.+..
T Consensus 176 ~a~RRvle~lasGillp~~~gl~DPcE~~~~~~~~~lt~qq~e~it~sAQ~~LRllafgq~~kvLg~d~~~ 246 (248)
T PF07528_consen 176 DAFRRVLECLASGILLPGSPGLRDPCEKDPVDVLDTLTLQQREDITSSAQTALRLLAFGQIHKVLGMDPLP 246 (248)
T ss_pred HHHHHHHHHHhCceecCCCCCCcCCCCCCCceeeccCCHHHHHHHHHHHHHHHHHHHhcCcceeccCCCCC
Confidence 6889999999999984 45555555444443321 111111122334677777776654
No 98
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.28 E-value=1.2e+02 Score=18.89 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=19.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHH
Q psy15361 49 YDILGVKPNCTQDELKKAYRKLAL 72 (178)
Q Consensus 49 Y~vLgv~~~as~~eIK~aYr~l~~ 72 (178)
|++=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 466788999999999998887443
Done!