RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15361
(178 letters)
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 112 bits (282), Expect = 4e-33
Identities = 40/63 (63%), Positives = 51/63 (80%), Gaps = 3/63 (4%)
Query: 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKRE 103
+Y+ILGV + + +E+KKAYRKLALKYHPDKNP + EKFK+I+ AYEVLS+PEKR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 104 LYD 106
+YD
Sbjct: 61 IYD 63
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 114 bits (288), Expect = 6e-31
Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSNP 99
+ + +Y+ILGV + +++E+KKAYRKLA KYHPD+NP + EKFK+I+ AYEVLS+P
Sbjct: 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60
Query: 100 EKRELYDQ 107
EKR YDQ
Sbjct: 61 EKRAAYDQ 68
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 112 bits (282), Expect = 3e-30
Identities = 38/62 (61%), Positives = 51/62 (82%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y+ILGV + +++E+KKAYRKLA KYHPD+N ++ EKFK+I+ AYEVLS+PEKR Y
Sbjct: 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61
Query: 106 DQ 107
DQ
Sbjct: 62 DQ 63
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 108 bits (273), Expect = 9e-29
Identities = 39/63 (61%), Positives = 51/63 (80%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y++LGV N ++DE+KKAYRKLA+KYHPD+NP + EKFK+I AYEVLS+P+KR
Sbjct: 6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAA 65
Query: 105 YDQ 107
YDQ
Sbjct: 66 YDQ 68
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 95.4 bits (238), Expect = 1e-26
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 4/60 (6%)
Query: 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEK 101
T +Y+ILGV + + DE+KKAYRKLALKYHPDKNP + EKFK+I+ AYEVLS+PEK
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 101 bits (253), Expect = 7e-26
Identities = 37/63 (58%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y +LGV N + E+K+AYRKLA + HPD NP+E EKFK+IS+AYEVLS+PEKR +
Sbjct: 5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIV 64
Query: 106 DQG 108
D G
Sbjct: 65 DLG 67
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 100 bits (251), Expect = 1e-25
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y+ILGV N TQ+E+KKAYR+LA KYHPD N N EKFK+I+ AY+VLS+PEKR+LY
Sbjct: 5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLY 64
Query: 106 DQGASCLMAPLGLVSFTEAGYVSRKPKVTIPENGEEVV--------LETMDPEKERAQNA 157
DQ + G + G+ S I + E+V +ER +
Sbjct: 65 DQFGHAAFSGSGQQQQGQEGF-SDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTY 123
Query: 158 YRQAHQED 165
R ED
Sbjct: 124 QRPVKGED 131
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 92.2 bits (230), Expect = 2e-25
Identities = 36/55 (65%), Positives = 46/55 (83%), Gaps = 3/55 (5%)
Query: 47 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSN 98
+YDILGV P+ + +E+KKAYRKLALKYHPDKNP++ EKFK+I+ AYEVLS+
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 95.6 bits (238), Expect = 9e-24
Identities = 38/63 (60%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y++LGV + +DE+KKAYRKLALKYHPDKNP+ E FK+++ AYEVLSN +KR
Sbjct: 5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRR 64
Query: 105 YDQ 107
YDQ
Sbjct: 65 YDQ 67
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 94.5 bits (235), Expect = 2e-23
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 46 TTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE---KFKQISMAYEVLSNPEKR 102
+Y ILGV + +E+KKAYRKLA+KYHPDKNP + E +FK++S AYEVLS+ +KR
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60
Query: 103 ELYDQ 107
E YD+
Sbjct: 61 ESYDR 65
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 94.1 bits (234), Expect = 3e-23
Identities = 35/63 (55%), Positives = 51/63 (80%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y+ILGV + +++E+KK+YRKLA+KYHPD+NP + E FK+ + AYEVLS+P+KR +
Sbjct: 6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65
Query: 105 YDQ 107
YDQ
Sbjct: 66 YDQ 68
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 94.3 bits (235), Expect = 3e-23
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 15/80 (18%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 105
+Y+ILGV + +DELK+AYR+LA KYHPD K P ++FK+I+ AYEVLS+PE R Y
Sbjct: 5 YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARY 64
Query: 106 DQGASCLMAPLGLVSFTEAG 125
DQ F EAG
Sbjct: 65 DQ-------------FGEAG 71
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 93.6 bits (233), Expect = 5e-23
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKR 102
T +YD LGV + +QDE+KKAYRKL+ KYHPD N G EK+K++ AYE LS+P+KR
Sbjct: 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKR 62
Query: 103 ELYDQ 107
YDQ
Sbjct: 63 AAYDQ 67
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 92.6 bits (230), Expect = 1e-22
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 25 PVDKVPAIEACLPPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE 84
P D +P R V Y++L + +CT E+KKAYRKLA+K+HPDK + E
Sbjct: 7 PFDGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPE 65
Query: 85 KFKQISMAYEVLSNPEKRELYDQ 107
KFK+IS AYEVLS+PEKR++YD+
Sbjct: 66 KFKEISRAYEVLSDPEKRKIYDE 88
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 91.8 bits (228), Expect = 2e-22
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE---KFKQISMAYEVLSN 98
M + +Y+ILGV N T++E+KKAYR+LA KYHPD NP + E KFK+I+ AYE+LS+
Sbjct: 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60
Query: 99 PEKRELYDQ 107
P+KR YDQ
Sbjct: 61 PQKRAQYDQ 69
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 90.7 bits (225), Expect = 5e-22
Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSN 98
M ++ +Y++LGV T DE+KKAYRK A++YHPDKNP + EKFK+ + AY+VLS+
Sbjct: 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60
Query: 99 PEKRELYDQ 107
P+KR YDQ
Sbjct: 61 PDKRSRYDQ 69
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 89.5 bits (222), Expect = 1e-21
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKN--PNEGEKFKQISMAYEVLSNP 99
M +Y+ILG+ + + +++KKAYRKLA+KYHPDKN P+ EKFK+IS AY VLS+
Sbjct: 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60
Query: 100 EKRELYDQ 107
EKR YD+
Sbjct: 61 EKRAQYDR 68
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 89.0 bits (221), Expect = 2e-21
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y++LGV + ++DE+KKAYRKL+ KYHPD N EG EKFK+IS AYEVLS+ +KR Y
Sbjct: 6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQY 65
Query: 106 DQ 107
DQ
Sbjct: 66 DQ 67
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 88.3 bits (219), Expect = 4e-21
Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y++LG++ + DE+KKA+RKLA+KYHPDKN EKFK+I+ AY+VLS+P+K+
Sbjct: 6 YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQ 65
Query: 105 YDQ 107
YDQ
Sbjct: 66 YDQ 68
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 86.9 bits (215), Expect = 1e-20
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLS 97
M K+ +Y ILGV N +Q+++KKA+R+LA K+HPD +P EKFK+IS AYEVLS
Sbjct: 1 MAKD--YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLS 58
Query: 98 NPEKRELYDQGAS 110
+P+KR YDQ +
Sbjct: 59 DPQKRRQYDQTGT 71
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 86.3 bits (214), Expect = 2e-20
Identities = 35/63 (55%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y++LGV + ++DE+KKAYRKLAL+YHPD+NP+ E KFK+ + AYEVL + EKR
Sbjct: 6 YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRAR 65
Query: 105 YDQ 107
YD+
Sbjct: 66 YDR 68
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 83.3 bits (205), Expect = 6e-20
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLS 97
M +Y+ILGV PN + +E+KKAYRKLALKYHPD+NP + EKFK+I+ AYE+LS
Sbjct: 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61
Query: 98 NPEKRELYDQGAS 110
+PE+R YD+ +
Sbjct: 62 DPERRAEYDKIGA 74
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 84.9 bits (210), Expect = 8e-20
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 99
M ++ +Y++LGV N + E+KKAYRKLA KYHPD + EG EKFK+IS AY VLS+
Sbjct: 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60
Query: 100 EKRELYDQ 107
EKR+ YDQ
Sbjct: 61 EKRQRYDQ 68
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 84.6 bits (209), Expect = 1e-19
Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y++LGV + DE+K AYRKLALKYHPD+N +G EKF QI+ AY VLS+ EKR Y
Sbjct: 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHY 63
Query: 106 DQ 107
D+
Sbjct: 64 DR 65
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 82.7 bits (204), Expect = 2e-19
Identities = 38/61 (62%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 105
+Y ILGV N +QDE+KKA++KLA KYHPD K+P EKFK+I+ AY VLS+PEKR +Y
Sbjct: 6 YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIY 65
Query: 106 D 106
D
Sbjct: 66 D 66
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 84.0 bits (208), Expect = 2e-19
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSNPEK 101
E FY LGV + + +E+KKAYRKLA + HPD NP + E+FK +S A++VLS+P K
Sbjct: 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67
Query: 102 RELYDQ 107
R+ YD+
Sbjct: 68 RKEYDE 73
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 82.9 bits (205), Expect = 3e-19
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLSNPEKRE 103
+Y+ILGV N TQ+E+K+AY++L ++HPD++P +KFK+I AYEVLS+P+KR
Sbjct: 6 YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65
Query: 104 LYDQ 107
+YD+
Sbjct: 66 MYDR 69
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 80.4 bits (198), Expect = 3e-18
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Query: 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNP 99
+ E ++YDILGV + +E+K AYRKLA+KYHPDKN EKFK+ + AYE+L +P
Sbjct: 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60
Query: 100 EKRELYDQ 107
+KR+ YDQ
Sbjct: 61 KKRQAYDQ 68
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 79.9 bits (197), Expect = 5e-18
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKN---PNEGEKFKQISMAYEVLSNPEK 101
E +Y +LGV + T+ E+KKAYRKLA +YHPD N E+FK+IS AY+VLS+ +K
Sbjct: 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67
Query: 102 RELYDQGAS 110
R+ YD+ S
Sbjct: 68 RKEYDEARS 76
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 74.3 bits (182), Expect = 5e-16
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 105
+Y++LGV N + DE+KKAYRKLA KYHPD K P+ +KFK++ AY+ LS+P+K+ Y
Sbjct: 6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHY 65
Query: 106 DQ 107
DQ
Sbjct: 66 DQ 67
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 72.5 bits (178), Expect = 1e-15
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 105
+Y I+GVKP +K AYR+LA KYHPD K P+ +FK+++ A+EVLS+ ++R Y
Sbjct: 6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 65
Query: 106 DQ 107
DQ
Sbjct: 66 DQ 67
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 72.3 bits (177), Expect = 2e-15
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK---FKQISMAYEVLSNPEKREL 104
+Y+ILG+ ++DE+KKAYRK+A+KYHPDKN E FK+ + AYEVL + KR
Sbjct: 5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQ 64
Query: 105 YDQ 107
YD+
Sbjct: 65 YDR 67
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 72.5 bits (177), Expect = 2e-15
Identities = 30/62 (48%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 105
+Y++LG+ + + E+KKA+RKLA KYHPD+N P+ F +I+ A +VLSNP+KR Y
Sbjct: 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANY 63
Query: 106 DQ 107
D+
Sbjct: 64 DK 65
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 68.6 bits (167), Expect = 4e-14
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 45 ETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEK 101
E ++Y+IL V+ + Q+ +KK+YRKLALKYHPD+N + EKFK I+ AY VLS+ +K
Sbjct: 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK 61
Query: 102 RELYDQ 107
R LYD+
Sbjct: 62 RALYDR 67
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 68.0 bits (166), Expect = 7e-14
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPD--KNPNEGEKFKQISMAYEVLSNPE 100
+K+ +Y++LGV ++ E+++AYRKLA +YHPD K+P+ +K +I+ A +VL + +
Sbjct: 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60
Query: 101 KRELYDQ 107
KR+ YDQ
Sbjct: 61 KRKQYDQ 67
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 64.3 bits (156), Expect = 1e-12
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 104
+Y ILGV +Q +LKKAY KLA +YHPD + + KFK+I+ AY+VL + +KR
Sbjct: 5 YYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAA 63
Query: 105 YDQ 107
YD+
Sbjct: 64 YDR 66
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 58.4 bits (141), Expect = 2e-10
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--------EKFKQISMAYEVLSNPE 100
Y+ILG+ + ++ ++KK YR L++K+HPDK P EK+K I+ AY +L++ +
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 101 KRELY 105
+RE Y
Sbjct: 161 RRENY 165
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 54.8 bits (133), Expect = 2e-09
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----------EKFKQISMAYEVL 96
Y +LGV + E+K+AYRKL ++HPDK +G EK ++I AYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 52.5 bits (125), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 43 VKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDK-NPNEG-EKFKQISMAYEVLSNPE 100
+ +T FYDILGV N E+ + Y KLA Y+P K + NEG KFK+I+ AY++L + +
Sbjct: 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDID 629
Query: 101 KRELYDQ 107
K+++Y++
Sbjct: 630 KKKMYNK 636
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 45.0 bits (106), Expect = 6e-06
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 59 TQDELKKAYRKLALKYHPDKNPNEGEK-----FKQISMAYEVLSNPEKRELYD 106
++ KA++K KYHPDK G K FK I A EVL + + R YD
Sbjct: 59 IPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 50 DILGVKPNCTQDE--LKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVL 96
D+LG+ + + ++KAY + L++HPDK +E EK K+++ Y+
Sbjct: 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE-EKMKELNTLYKKF 56
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 39.2 bits (92), Expect = 5e-04
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 50 DILGVKPNCTQDE--LKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVL 96
D+LG+ + ++KAY + +YHPDK +E EK K+++ Y+ L
Sbjct: 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE-EKMKRLNSLYKKL 62
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 37.3 bits (87), Expect = 0.001
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELYD 106
+LGV+ QD +KKAYRKL + HPDK +G K + I E L E +E Y+
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ--EIQEAYE 171
Score = 33.1 bits (76), Expect = 0.035
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 60 QDELKKAYRKLALKYHPDKNPNEGE--------KFKQISMAYEVLSNPEKRELY 105
D LK YR+L YHPD+ E + +++ AY+ L +P R Y
Sbjct: 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 36.4 bits (84), Expect = 0.003
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 63 LKKAYRKLALKYHPD--KNPNEGEKFKQIS----MAYEVLSNPEKRELY 105
L+K Y + +KYHPD K E E+ I+ AY L + KR Y
Sbjct: 21 LEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEY 69
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 35.8 bits (83), Expect = 0.005
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 60 QDELKKAYRKLALKYHPDKNPNEGEKFKQISM--------AYEVLSNPEKRELY 105
+ L AYR + + HPD+ G+ K+++M AY+ L +P KR Y
Sbjct: 22 EAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARY 75
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 34.8 bits (80), Expect = 0.009
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 60 QDELKKAYRKLALKYHPDKNPNEGEKFKQISM--------AYEVLSNPEKRELY 105
D+L YR+LA + HPD+ + E+ +++++ AY+ L +P +R Y
Sbjct: 20 LDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 33.3 bits (76), Expect = 0.017
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPD 77
Y IL + P +++ +++A+++L L+ HPD
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 32.2 bits (73), Expect = 0.069
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 60 QDELKKAYRKLALKYHPDKNPNEGEKFK------QISMAYEVLSNPEKRELY 105
Q L+K YR+L +YHPD + E+ ++ AY L +P +R Y
Sbjct: 5 QSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 31.4 bits (72), Expect = 0.13
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 63 LKKAYRKLALKYHPDKNPNEGEKFK--------QISMAYEVLSNPEKRELY 105
L Y++L ++HPDK N E+ + I+ AY+ L +P KR Y
Sbjct: 20 LASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEY 70
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 30.1 bits (68), Expect = 0.72
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 36 LPPRPNMVKETTFYD-ILGVKPNCTQDELKKAYR---------KLALKYHPD-----KNP 80
LP P + + + +LG K N +QDE+ A + L Y + +
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Query: 81 NEGEKFKQISMAYEVLSNPEKRELYDQGASCL 112
+ G+K ++I++A +L+ K + D+ S L
Sbjct: 613 SGGQK-QRIALARALLT-DSKVLILDESTSNL 642
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase.
Length = 308
Score = 29.7 bits (67), Expect = 0.86
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 52 LGVKPNCTQDELKKAYRKLALKYHPDK 78
L V + T +LKKA K KY+P +
Sbjct: 18 LEVPDSATVADLKKAIHKRKKKYYPSR 44
>gnl|CDD|173862 cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 491
Score = 28.3 bits (64), Expect = 2.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 121 FTEAGYVSRKPKVTIPENGEEVVLETM--DPEKERAQNAYRQ 160
EAG+ R + + +GE + E + P ER Y +
Sbjct: 327 LAEAGWTVRGGDILVNADGEPLSFEILLDSPTFERVLLPYVR 368
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting
Protein 4 and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L
contain a central Cdc42-binding HR1 domain. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 251
Score = 27.6 bits (62), Expect = 3.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 60 QDELKKAYRKLALKYHPDKNPNEGEKF 86
+ E K RKL KY P K + F
Sbjct: 35 EQEYAKKLRKLVKKYLPKKKEEDEYSF 61
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 546
Score = 27.9 bits (63), Expect = 3.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 56 PNCTQDELKKAYRKLALKYHPDKN 79
P T +E K+ +R+L +Y P +
Sbjct: 431 PEHTPEERKEKWRELEKRYLPWVD 454
>gnl|CDD|238237 cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI)
catalyzes the fourth step of the tryptophan
biosynthesis, the conversion of N-(5'-
phosphoribosyl)-anthranilate (PRA) to
1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate
(CdRP). Most PRAIs are monomeric, monofunctional and
thermolabile, but in some thermophile organisms PRAI is
dimeric for reasons of stability and in others it is
fused to other components of the tryptophan
biosynthesis pathway to form multifunctional enzymes.
Length = 203
Score = 27.2 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 15 IFSVKFPDVIPVDKVPAIEACLPPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKY 74
IF+ K P + ++ I A LPP V GV N +E+ + +L L
Sbjct: 26 IFAPKSPRYVSPEQAREIVAALPPFVKRV---------GVFVNEDLEEILEIAEELGLDV 76
>gnl|CDD|177046 CHL00123, rps6, ribosomal protein S6; Validated.
Length = 97
Score = 26.1 bits (58), Expect = 4.4
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 42 MVKETTFYDILG-VKPNCTQDELKK---AYRKLALKY 74
M+ + Y+ + +KP+ ++EL K Y+KL K
Sbjct: 1 MMSKLNKYETMYLLKPDLNEEELLKWIENYKKLLRKR 37
>gnl|CDD|151033 pfam10460, Peptidase_M30, Peptidase M30. This family contains the
metallopeptidase hyicolysin. Hyicolysin has a zinc ion
which is liganded by two histidine and one glutamate
residue.
Length = 366
Score = 27.2 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 137 ENGEEVVLETMDPEKERAQNAYRQAHQE 164
+G VL TM E QN YR+
Sbjct: 133 TDGLNTVLSTMAHEGTHMQNFYRRGVLM 160
>gnl|CDD|132300 TIGR03256, met_CoM_red_alp, methyl-coenzyme M reductase, alpha
subunit. Members of this protein family are the alpha
subunit of methyl coenzyme M reductase, also called
coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This
enzyme, with alpha, beta, and gamma subunits, catalyzes
the last step in methanogenesis. Several methanogens
have encode two such enzymes, designated I and II; this
model does not separate the isozymes [Energy
metabolism, Methanogenesis].
Length = 548
Score = 26.8 bits (59), Expect = 6.9
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYH-PDKNPNEGEKFKQ-ISMAYEV 95
K+TTFY + G K + + E +A +++A K P NP+ G Q + M Y+V
Sbjct: 19 KKTTFYTLGGWKQSERKKEFVEAGKEIAEKRGIPFYNPDIGTPLGQRVLMPYQV 72
>gnl|CDD|182805 PRK10880, PRK10880, adenine DNA glycosylase; Provisional.
Length = 350
Score = 26.6 bits (59), Expect = 8.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Query: 111 CLMAPL--GLVSFTE---AGYVSRKPKVTIPE---------NGEEVVLETMDP 149
C + PL G +++ A Y +KPK T+PE +G+EV LE P
Sbjct: 199 CELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGDEVWLEQRPP 251
>gnl|CDD|220982 pfam11105, CCAP, Arthropod cardioacceleratory peptide 2a. CCAP
exerts a reversible and dose-dependant
cardio-stimulatory effect on the semi-isolated heart of
experimental beetles. CCAP also increases free hemolymph
sugar concentration in young larvae and adults of the
meal-worm beetle.
Length = 133
Score = 25.7 bits (56), Expect = 9.8
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 109 ASCLMAPLGLVSFTEAGYVSRKPKVTIPENGEEVVLETMDPEKERAQNAY 158
L+ + L++ + G R+P+ N E + PEK NA+
Sbjct: 5 MRILLLLVALLACLDCGVADREPRNYKQYNMEPHK---LSPEKRPFCNAF 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,150,667
Number of extensions: 836018
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 69
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)