RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15361
(178 letters)
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 135 bits (342), Expect = 2e-42
Identities = 47/67 (70%), Positives = 60/67 (89%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 101
MVKET +YD+LGVKP+ + +ELKKAYRK+ALK+HPDKNP+ E+FKQIS AYEVLS+ +K
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63
Query: 102 RELYDQG 108
R++YDQG
Sbjct: 64 RQIYDQG 70
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 134 bits (339), Expect = 1e-41
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 41 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPE 100
MVKET YD+LGV P+ + ELKK YRK ALKYHPDK + EKFK+IS A+E+L++P+
Sbjct: 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ 62
Query: 101 KRELYDQG 108
KRE+YDQ
Sbjct: 63 KREIYDQY 70
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 116 bits (292), Expect = 1e-34
Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 99
M K+ +Y LG+ + +E+K+AYR+ AL+YHPDKN G EKFK+I+ AY+VLS+P
Sbjct: 1 MGKD--YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58
Query: 100 EKRELYDQ 107
KRE++D+
Sbjct: 59 RKREIFDR 66
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 113 bits (285), Expect = 2e-33
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE----KFKQISMAYEVLSNPEKRE 103
+Y+IL V + + D++KKAYR+ AL++HPDKNP+ E KFK+++ AYEVLS+ KRE
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 104 LYDQ 107
+YD+
Sbjct: 64 IYDR 67
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 113 bits (284), Expect = 3e-33
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 37 PPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAY 93
T YD+LGV TQ ++K AY + YHPD+N E+F +IS AY
Sbjct: 8 SQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67
Query: 94 EVLSNPEKRELYDQ 107
VL + R YD+
Sbjct: 68 VVLGSATLRRKYDR 81
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 113 bits (284), Expect = 3e-33
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 37 PPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAY 93
R + Y +LG+ N T D++KK+YRKLALKYHPDKNP+ +KFK+I+ A+
Sbjct: 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
Query: 94 EVLSNPEKRELYDQ 107
+L++ KR +YD+
Sbjct: 68 AILTDATKRNIYDK 81
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 118 bits (299), Expect = 4e-33
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
+Y ILGV+P +K AYR+LA KYHPD + KFK ++ A+EVL + ++R Y
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 106 DQG 108
DQ
Sbjct: 90 DQL 92
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 111 bits (279), Expect = 1e-32
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 105
Y +LGV +Q ++KKAY+KLA ++HPDKN + G ++F QIS AYE+LSN EKR Y
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 106 DQ 107
D
Sbjct: 79 DH 80
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 110 bits (278), Expect = 1e-32
Identities = 34/64 (53%), Positives = 51/64 (79%), Gaps = 4/64 (6%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLSNPEKRE 103
+Y++LGV+ + + +++KKAYRKLAL++HPDKNP+ +KFK +S AYEVLS+ +KR
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 104 LYDQ 107
LYD+
Sbjct: 71 LYDR 74
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 112 bits (281), Expect = 3e-32
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 41 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---------EKFKQISM 91
M K+ +Y ILG P+ +LK+ Y+KL L YHPDK + +KF +I
Sbjct: 6 QMPKKD-WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64
Query: 92 AYEVLSNPEKRELYDQG 108
A+++L N E + YD
Sbjct: 65 AWKILGNEETKREYDLQ 81
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 110 bits (276), Expect = 3e-32
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLSNPEKRE 103
+Y++L V + + +KKAYRKLALK+HPDKNP +FKQ++ AYEVLS+ +KR+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 104 LYDQ 107
+YD+
Sbjct: 71 IYDR 74
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 108 bits (273), Expect = 6e-32
Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 99
+Y+ILGV + ++LKKAYR+LALK+HPDKN G E FK I AY VLSNP
Sbjct: 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62
Query: 100 EKRELYDQ 107
EKR+ YDQ
Sbjct: 63 EKRKQYDQ 70
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 109 bits (274), Expect = 1e-31
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y+ILGV + E++KAY++LA+KYHPD+N + KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 105 YDQ 107
YDQ
Sbjct: 65 YDQ 67
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 112 bits (281), Expect = 1e-31
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
FY +LGV + E+++A++KLALK HPDKNPN F +I+ AYEVL + + R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 105 YDQ 107
YD+
Sbjct: 64 YDK 66
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 108 bits (272), Expect = 2e-31
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y +LG + +++ ++ AL+ HPDK+P E F+++ A E+L+N E R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 105 YDQ 107
YD
Sbjct: 82 YDH 84
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 107 bits (269), Expect = 3e-31
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 41 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSN 98
+ ++YDILGV + ++ ++KKA+ KLA+KYHPDKN + KF++I+ AYE LS+
Sbjct: 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD 61
Query: 99 PEKRELYDQ 107
+R+ YD
Sbjct: 62 ANRRKEYDT 70
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 107 bits (269), Expect = 3e-31
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---------EKFKQISMAYEVLSN 98
+Y ILG P+ +LK+ Y+KL L YHPDK + +KF +I A+++L N
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 99 PEKRELYDQ 107
E ++ YD
Sbjct: 78 EETKKKYDL 86
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 106 bits (266), Expect = 7e-31
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 104
+Y ILGV N +Q E+KKAY +LA KYHPD N ++ EKF Q++ AYEVLS+ KR+
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 105 YDQ 107
YD
Sbjct: 69 YDA 71
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 107 bits (268), Expect = 8e-31
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 41 NMVKETT-FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLS 97
+M +E+ D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+ +
Sbjct: 2 HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKME 60
Query: 98 NPEKRELYDQ 107
+ K
Sbjct: 61 DGVKYAHQPD 70
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 106 bits (266), Expect = 1e-29
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRELY 105
D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+ + + K
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYAHQ 71
Query: 106 DQG 108
Sbjct: 72 PDF 74
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 103 bits (259), Expect = 1e-29
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 42 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 99
+ +D+LGVKP ++DE+ KAYRKLA+ HPDK G + FK + A L
Sbjct: 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82
Query: 100 EKRELYD 106
K
Sbjct: 83 IKSGPSS 89
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 101 bits (254), Expect = 1e-28
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 48 FYDILGVKPN-CTQDELKKAYRKLALKYHPDKNPNEG------EKFKQISMAYEVLSNPE 100
YD+L V + +L KAYR LA K+HPD+ N+ E+F+ I+ AYE L + E
Sbjct: 17 CYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 101 KRELYDQ 107
+ YD
Sbjct: 77 AKTNYDY 83
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 95.5 bits (238), Expect = 2e-26
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 38 PRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAY 93
PR +++KE ++ + E KK R+L LK+HPDKNP E FK +
Sbjct: 10 PRGSILKE--VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEI 67
Query: 94 EVLSNPEKRELYDQ 107
L EK+ DQ
Sbjct: 68 NRL---EKQAFLDQ 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 94.0 bits (234), Expect = 4e-23
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE------KFKQISMAYEVLSNPEK 101
+Y ILGVK N + E+ KAYRKLAL++HPD NE E KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 102 RELYDQG 108
R+ +D G
Sbjct: 444 RKKFDDG 450
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 92.5 bits (229), Expect = 2e-22
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 48 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKFKQISMAYEVLSNPEKREL 104
FY +LGV + E+++A++KLALK HPDKNPN F +I+ AYEVL + + R+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 105 YDQ 107
YD+
Sbjct: 83 YDK 85
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 76.5 bits (188), Expect = 3e-19
Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 44 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 101
+ ++L + D +++AY++ +L HPDK + ++++ +
Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-ALMQELNSLWGTFKTEVY 67
Query: 102 RELYDQGAS 110
+ G +
Sbjct: 68 NLRMNLGGT 76
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 75.4 bits (185), Expect = 9e-18
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 46 TTFYDILGVKPNCT-------QDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSN 98
+TFY++ Q L+K YR+L ++HPD E+ ++ AY L +
Sbjct: 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD 70
Query: 99 PEKRELYDQ 107
P +R Y
Sbjct: 71 PLRRSQYML 79
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 72.3 bits (177), Expect = 1e-16
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 44 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGE--------KFKQISMAY 93
++++ G+ D L +R L ++HPD E + QI+ AY
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 94 EVLSNPEKRELYD 106
+ L +P +R Y
Sbjct: 62 QTLKDPLRRAEYL 74
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 70.8 bits (173), Expect = 5e-16
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 48 FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGE--------KFKQISMAYEVLS 97
++ + G+ D L ++ L +YHPDK + + + I+ A++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 98 NPEKRELYD 106
+P R Y
Sbjct: 63 HPLMRAEYL 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 68.7 bits (167), Expect = 3e-15
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSNPEKR 102
+ +G+ T +++KK YRK L HPDK + + F +++ A+ N ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 103 ELY 105
LY
Sbjct: 180 PLY 182
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 63.1 bits (154), Expect = 3e-14
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 49 YDILGVKPNC-TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRE 103
IL + N T+ +LK+ +RK+ L HPDK + +I+ A + L +
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGISK 71
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 61.7 bits (149), Expect = 2e-12
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 37 PPRPNMVKETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISM--- 91
P P ++ ++ + D +L+ Y++L HPD + K S
Sbjct: 38 APDPTR----DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHS 93
Query: 92 -----AYEVLSNPEKRELYD 106
AY+ L P R LY
Sbjct: 94 TLVNDAYKTLLAPLSRGLYL 113
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 55.4 bits (133), Expect = 7e-11
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSN 98
+ +G+ T +++KK YRK L HP K + + F +++ A+ N
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 53.8 bits (129), Expect = 3e-10
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 49 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----------EKFKQISMAYEVLSN 98
+ + + + ++K+Y++ L HPDK +G + F+ + A++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-06
Identities = 27/177 (15%), Positives = 47/177 (26%), Gaps = 67/177 (37%)
Query: 3 CVTRILQYGTTGIFSVKFPDVIPVD--KVPAIEACLPPRPNMVKETT---FYDILGVKPN 57
C +IL TT V D + +++ + + L +P
Sbjct: 266 C--KILL--TTRFKQVT--DFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDCRP- 315
Query: 58 CTQDELKKAYRKLALKYHP----------DKNPNEGEKFKQ---------ISMAYEVLSN 98
+L + L +P + +K I + VL
Sbjct: 316 ---QDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 99 PEKRELYDQGASCLMAPLGLVSFTEAGYVSRKPK-VTIPENGEEVVLETM--DPEKE 152
E R+++D+ L F P IP +L + D K
Sbjct: 369 AEYRKMFDR----------LSVF---------PPSAHIPTI----LLSLIWFDVIKS 402
Score = 34.1 bits (77), Expect = 0.024
Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 51/175 (29%)
Query: 1 MDCVTRILQYGTTGIFSVKFPDVIPVDKVPAIEACLPP------------RPNMVKETTF 48
MD T QY I SV + ++ + V T
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 49 -YDILGVKPNCT-----QDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKR 102
+ L K ++ L+ Y+ L + +Q SM + E+R
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--------TEQRQPSMMTRMYI--EQR 116
Query: 103 E-LYDQGASCLMAPLGLVSFTEAGYVSRKPKVT---------IPENGEEVVLETM 147
+ LY+ F + VSR P V+++ +
Sbjct: 117 DRLYNDN----------QVFAK-YNVSRLQPYLKLRQALLELRPAKN--VLIDGV 158
Score = 29.4 bits (65), Expect = 0.70
Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 73/214 (34%)
Query: 16 FSVKFPDVIPVDKVPAIEACLPPRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYH 75
SV FP + P ++ ++D+ + + K ++ ++
Sbjct: 378 LSV-FPPSAHI-------------PTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQ 420
Query: 76 PD---------------KNPNEGEKFKQISMAYEVLSN-------PEKRELY-------- 105
P K NE + I Y + P + Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 106 ----DQGASCLMAPLGLVSFTEAGYVSRKPK-VTIPENGEEVVLETM------------- 147
+ + + + F ++ +K + + N +L T+
Sbjct: 481 LKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 148 DPEKERAQNAYR---QAHQEDEDQGPSR--VQCA 176
DP+ ER NA +E+ ++ A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.003
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 64 KKAYRKL--ALK-YHPDKNP 80
K+A +KL +LK Y D P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.15
Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 91 MAYEVLSN-PEKRELYDQGASCLMAPLGLVSFTEAGYVSRKPK-VT----------IPEN 138
M ++ ++++++ + G F+ V P +T I EN
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG---FSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 139 GEEVVLETMDPEKERAQNAYRQAHQEDED---QGP 170
++ ET+ K + + +++ ++ +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 27.5 bits (61), Expect = 0.51
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 51 ILGVKP---NCTQDELKKAYRKLALKYHPDK 78
IL ++ + D++ + L +K
Sbjct: 9 ILNIEESKGDLNMDKINNRFNYLFEVNDKEK 39
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 28.4 bits (64), Expect = 0.66
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 16 FSVKFPD--VIPVDKVPAIEACLPPRPN 41
F++KFP+ + + +E LPPR
Sbjct: 74 FTIKFPENHFTSEENLKKLEEILPPRIV 101
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A*
3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Length = 549
Score = 28.3 bits (63), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 44 KETTFYDILGVKPNCTQDELKKAYRKLALKYH-PDKNPNEGEKFKQIS-MAYEV 95
K+TTFY + G K + + E A +++A K P NP+ G Q M Y+V
Sbjct: 20 KKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQV 73
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 26.8 bits (60), Expect = 2.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 16 FSVKFPDVIPVDKVPAIEACLP 37
F V FP+ IP +E LP
Sbjct: 159 FEVIFPERIPQTSRTVLEQVLP 180
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein;
2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Length = 97
Score = 26.2 bits (57), Expect = 2.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 61 DELKKAYRKLALKYHPDKNPNEGEKFKQISMAY 93
D++ + R++A K P E+ +QI M +
Sbjct: 65 DDMARLARQVAAILTNKKRPAATERSEQIQMEF 97
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 27.4 bits (60), Expect = 2.9
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Query: 65 KAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKR-ELYDQGASCLMAPLG--LVSF 121
++L+ ++ E+ S E L Q A L + L
Sbjct: 47 GLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLL 106
Query: 122 TEAGYVSRKPKVTIPENGEEVVLETMDPEKERAQNAYRQAHQEDED 167
RK + ++ + +T + E+ ++ YR ++
Sbjct: 107 IRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQ 152
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 88
Score = 25.3 bits (55), Expect = 5.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 54 VKPNCTQDELKKAYRKLALKYHPD 77
V+P+ T E+K + K +++P
Sbjct: 30 VEPHATIAEIKNLFTKTHPQWYPA 53
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics,
structural genomics consortium, SGC, lipid binding
protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Length = 149
Score = 25.7 bits (56), Expect = 7.2
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 84 EKFKQISMAYEVLSNPEKRELYDQGASCLMAPLGLVSFTEAGYVSRKPKVTIPENGEEVV 143
E SM++ + +E ++ M +GL K I +NG+
Sbjct: 16 ENLYFQSMSFSGKYQLQSQENFEA----FMKAIGLPEELIQKGKDIKGVSEIVQNGKHFK 71
Query: 144 LETMDPEK 151
K
Sbjct: 72 FTITAGSK 79
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 25.1 bits (55), Expect = 8.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 109 ASCLMAPLGLVSFTEAGYVSRKPKVTI-----PENGEEVVL 144
S + L LVS T + + P++ + PENG+ +L
Sbjct: 3 RSVTLVFLVLVSLTGLYAIQKTPQIQVYSRHPPENGKPNIL 43
>3td9_A Branched chain amino acid ABC transporter, peripl amino
acid-binding protein; leucine binding, structural
genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Length = 366
Score = 25.7 bits (57), Expect = 9.0
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 115 PLGLVSFTEAGYVSRKPKVTIPENGEEVVLETMDPEK 151
G+++ E G + V I +NG ++P+
Sbjct: 328 ASGIINIDENGDAIKSVVVNIVKNGSVDFEAVINPDD 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,786,715
Number of extensions: 162110
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 49
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.1 bits)